lowQualScore : 1 8 8 22 4 1 7 3333 0
lowQualScore : . . . .. . . . .... .
lowQualScore : 2 2 2 55 9 2 0 3333 2
consensus : ATCAATCTCATA-ANTCCTATAA-AGAATAC-AAAAT---CAAGAGTTGGGCAAACA
Reference ( gi|47113 ) : ATCAATCTCATA-ACTCCTACAA-GGGATAC-AGAAT---TAAGAGTTGGGCAAACA
gi|47121 : ATCAATCTCATA-AC-CCTACAA-GGAATAC-AAAAT---TAAGAGTTTGGCAAACA
gi|47114 : ATCAATCTCATA-ACTCCTGTAA-GGAATAC-AAAAT---CAGGAGTTGGGCAAACA
gi|47116 : ACCAATTTCATA-ATTCCTATAA-GGAATAC-AAAGT---TAAGAGTTGGGCAAACA
gi|47137 : ATCAATCTCATA-ACGCCTGTAA-GGAGTAC-AAAAT---TAAGAGATGGGCAAACA
gi|47138 : ATCCATTTTATA-ACTCCTATAA-GGCATAC-AAAAT---TAAGAACTGGGCAAACA
gi|47119 : ATCATTCTCATA-AATCCTATAC-GGAATAC-A-AAT---TAAGAGTTGGGCAAACA
gi|47124 : ATCAATTTTATA-ACTCTTATAA-GAAATAC-AAAATAAATAAGAGTTGGGCAAACA
gi|47126 : ATCAATCTCATA-AGTCCTAAAT-AGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47131 : ATCAATCTCATA-AGTCCCAAAT-AGAATAC-AAAAC---CAAGAGTTGGGCAAACA
gi|47128 : ATTAATCTCATA-ACTTCTATAA-AGGATGC-AAAAA---TAAGAGTAGGGCACACA
gi|47120 : ATCAATCTCGTA-AGTCCTATAT-AGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47123 : ATCAATCTCGTA-AATCCTAAAC-AGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47129 : ATCAATCTCATA-AGTCCCATAT-AGAATAC-GAAAG---CAAGAGTTGGGCAAACA
gi|47133 : ATCAATCTCACA-AATCCTAAAT-AGAATAC-AAAA----CAAGAGTTGGGCAAACA
gi|47134 : ATCAATCTCGTA-AGTCTCATAG-AGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47125 : ATCAATCTTGTA-AGTCCTAAAT-AGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47112 : ATCAACCTTACA-AATCTTATAA-AGAATAC-AAAAT---TAAGAATTAGACAAACA
gi|47130 : ATCAATCTTGCA-AGTCCCAAAA-AGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47111 : ATCAATCTTATA-AATCCTATGA-AGAATCCAAAAAT---TAAGAGCAGGGCAAACA
gi|47118 : ATCAATCTAATA-ATTTCTATGA-AGAATAC-AAAAT---TACGAGTAGGGAAAACA
gi|47127 : ATCAATCTTGTA-AGTCCTATAT-AGAATAC-AAAAA---CAAGAGTTGGGCAATCA
gi|47122 : ATAAATCTTATA-ACTTCTATGA-AGAATGG-AAAAT---TAAGAGTAGGGCAACCA
gi|47115 : ATCAATCTCAAA-AATCCTGTAA-AGAGTTC-AAAAT---TAAGGGTAGGGTAAACA
gi|47136 : ATCAATATCATA-AATCCCATGA-GGAATAC-GAAAT---TAAGATCAGGGTAAAC
gi|47132 : ATCAATCTCATATAATCC--CAATAGAATAC-AAAAA---CAAGAGTAGGGCAAACA
gi|47135 : ATCAATCTTA-A-AAAATTATAA-AGAATAC-AAAAT---CAAGACTAGGGTAAACA
gi|47141 : TCAATCTCATA-CCTCGTATAA-GGAATAC-AAAAT---TAATAGTTGGGCAAACA
gi|47140 : TCAATCTCATA-AATCCTAAAT-GGAATGC-AATAT---TAAGAGTTGGGCAAAC
gi|47139 : TCAATCTTGTA-AGTCCTAAAT-AGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47142 : CAATCTCATA-ACTCCTA-AA-AGAATGC-AAAAT---TAAGAGTAAGGCAA
gi|47143 : TCTCATA-A-TCCCATGA-AGAATAC-AAAAT---TAAGAGTAGGGCAAACA
gi|47144 : CTTGTA-AATCCCATAA-AGGATAC-AAAAT---TAAGAGTTTGGCAAACA
gi|47146 : CTATAA-AGGATAC-AAAAT---CAAGAGTAGGGCAAACA
gi|47145 : atgCTGTAA-AGAATAC-AAGAT---TAAGAGTAGGGCAAACA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|47117 ): ATTAGTCTTATAAATCCCATAAAGAATGCAAAATTCAGAGTGGGGTAAGCA
Alignments
lowQualScore : 1 33 0 0 1 3333
lowQualScore : . .. . . . ....
lowQualScore : 2 55 9 5 2 3333
consensus : ATCAATCTCATA-AN-TCCTATAAAGAATAC-AAAAT---CAAGAGTTGGGCAAACA
Reference ( family-479 ) : ATCAATCTCATA-AN-TCCTATAAAGAATAC-AAAAT---CAAGAGTTGGGCAAACA
gi|47111 : ATCAATCTTATA-AA-TCCTATGAAGAATCCAAAAAT---TAAGAGCAGGGCAAACA
gi|47112 : ATCAACCTTACA-AA-TCTTATAAAGAATAC-AAAAT---TAAGAATTAGACAAACA
gi|47113 : ATCAATCTCATA-AC-TCCTACAAGGGATAC-AGAAT---TAAGAGTTGGGCAAACA
gi|47114 : ATCAATCTCATA-AC-TCCTGTAAGGAATAC-AAAAT---CAGGAGTTGGGCAAACA
gi|47115 : ATCAATCTCAAA-AA-TCCTGTAAAGAGTTC-AAAAT---TAAGGGTAGGGTAAACA
gi|47116 : ACCAATTTCATA-AT-TCCTATAAGGAATAC-AAAGT---TAAGAGTTGGGCAAACA
gi|47117 : ATTAGTCTTATA-AA-TCCCATAAAGAATGC-AAAAT---TCAGAGTGGGGTAAGCA
gi|47118 : ATCAATCTAATA-AT-TTCTATGAAGAATAC-AAAAT---TACGAGTAGGGAAAACA
gi|47119 : ATCATTCTCATA-AA-TCCTATACGGAATAC--AAAT---TAAGAGTTGGGCAAACA
gi|47120 : ATCAATCTCGTA-AG-TCCTATATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47121 : ATCAATCTCATA-AC--CCTACAAGGAATAC-AAAAT---TAAGAGTTTGGCAAACA
gi|47123 : ATCAATCTCGTA-AA-TCCTAAACAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47124 : ATCAATTTTATA-AC-TCTTATAAGAAATAC-AAAATAAATAAGAGTTGGGCAAACA
gi|47125 : ATCAATCTTGTA-AG-TCCTAAATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47126 : ATCAATCTCATA-AG-TCCTAAATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47127 : ATCAATCTTGTA-AG-TCCTATATAGAATAC-AAAAA---CAAGAGTTGGGCAATCA
gi|47128 : ATTAATCTCATA-AC-TTCTATAAAGGATGC-AAAAA---TAAGAGTAGGGCACACA
gi|47129 : ATCAATCTCATA-AG-TCCCATATAGAATAC-GAAAG---CAAGAGTTGGGCAAACA
gi|47130 : ATCAATCTTGCA-AG-TCCCAAAAAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47131 : ATCAATCTCATA-AG-TCCCAAATAGAATAC-AAAAC---CAAGAGTTGGGCAAACA
gi|47132 : ATCAATCTCATATAA-TCCCA-ATAGAATAC-AAAAA---CAAGAGTAGGGCAAACA
gi|47133 : ATCAATCTCACA-AA-TCCTAAATAGAATAC-AAAA----CAAGAGTTGGGCAAACA
gi|47134 : ATCAATCTCGTA-AG-TCTCATAGAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47135 : ATCAATCTTAAA-AAAT--TATAAAGAATAC-AAAAT---CAAGACTAGGGTAAACA
gi|47137 : ATCAATCTCATA-AC-GCCTGTAAGGAGTAC-AAAAT---TAAGAGATGGGCAAACA
gi|47138 : ATCCATTTTATA-AC-TCCTATAAGGCATAC-AAAAT---TAAGAACTGGGCAAACA
gi|47139 : TCAATCTTGTA-AG-TCCTAAATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47140 : TCAATCTCATA-AA-TCCTAAATGGAATGC-AATAT---TAAGAGTTGGGCAAAC
gi|47141 : TCAATCTCATA-CC-TCGTATAAGGAATAC-AAAAT---TAATAGTTGGGCAAACA
gi|47142 : CAATCTCATA-AC-TCCTA-AAAGAATGC-AAAAT---TAAGAGTAAGGCAA
gi|47143 : TCTCATA-A--TCCCATGAAGAATAC-AAAAT---TAAGAGTAGGGCAAACA
gi|47144 : CTTGTA-AA-TCCCATAAAGGATAC-AAAAT---TAAGAGTTTGGCAAACA
gi|47145 : CTGTAAAGAATAC-AAGAT---TAAGAGTAGGGCAAACA
gi|47146 : atgCTATAAAGGATAC-AAAAT---CAAGAGTAGGGCAAACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|47122 ): ATAAATCTTATAACTTCTATGAAGAATGGAAAATTAAGAGTAGGGCAACCA
Unaligned ( gi|47136 ): ATCAATATCATAAATCCCATGAGGAATACGAAATTAAGATCAGGGTAAAC
Alignments
lowQualScore : 1 33 0 0 1 3333
lowQualScore : . .. . . . ....
lowQualScore : 2 55 9 5 2 3333
consensus : ATCAATCTCATA-AN-TCCTATAAAGAATAC-AAAAT---CAAGAGTTGGGCAAACA
Reference ( family-479 ) : ATCAATCTCATA-AN-TCCTATAAAGAATAC-AAAAT---CAAGAGTTGGGCAAACA
gi|47111 : ATCAATCTTATA-AA-TCCTATGAAGAATCCAAAAAT---TAAGAGCAGGGCAAACA
gi|47112 : ATCAACCTTACA-AA-TCTTATAAAGAATAC-AAAAT---TAAGAATTAGACAAACA
gi|47113 : ATCAATCTCATA-AC-TCCTACAAGGGATAC-AGAAT---TAAGAGTTGGGCAAACA
gi|47114 : ATCAATCTCATA-AC-TCCTGTAAGGAATAC-AAAAT---CAGGAGTTGGGCAAACA
gi|47115 : ATCAATCTCAAA-AA-TCCTGTAAAGAGTTC-AAAAT---TAAGGGTAGGGTAAACA
gi|47116 : ACCAATTTCATA-AT-TCCTATAAGGAATAC-AAAGT---TAAGAGTTGGGCAAACA
gi|47117 : ATTAGTCTTATA-AA-TCCCATAAAGAATGC-AAAAT---TCAGAGTGGGGTAAGCA
gi|47118 : ATCAATCTAATA-AT-TTCTATGAAGAATAC-AAAAT---TACGAGTAGGGAAAACA
gi|47119 : ATCATTCTCATA-AA-TCCTATACGGAATAC--AAAT---TAAGAGTTGGGCAAACA
gi|47120 : ATCAATCTCGTA-AG-TCCTATATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47121 : ATCAATCTCATA-AC--CCTACAAGGAATAC-AAAAT---TAAGAGTTTGGCAAACA
gi|47123 : ATCAATCTCGTA-AA-TCCTAAACAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47124 : ATCAATTTTATA-AC-TCTTATAAGAAATAC-AAAATAAATAAGAGTTGGGCAAACA
gi|47125 : ATCAATCTTGTA-AG-TCCTAAATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47126 : ATCAATCTCATA-AG-TCCTAAATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47127 : ATCAATCTTGTA-AG-TCCTATATAGAATAC-AAAAA---CAAGAGTTGGGCAATCA
gi|47128 : ATTAATCTCATA-AC-TTCTATAAAGGATGC-AAAAA---TAAGAGTAGGGCACACA
gi|47129 : ATCAATCTCATA-AG-TCCCATATAGAATAC-GAAAG---CAAGAGTTGGGCAAACA
gi|47130 : ATCAATCTTGCA-AG-TCCCAAAAAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47131 : ATCAATCTCATA-AG-TCCCAAATAGAATAC-AAAAC---CAAGAGTTGGGCAAACA
gi|47132 : ATCAATCTCATATAA-TCCCA-ATAGAATAC-AAAAA---CAAGAGTAGGGCAAACA
gi|47133 : ATCAATCTCACA-AA-TCCTAAATAGAATAC-AAAA----CAAGAGTTGGGCAAACA
gi|47134 : ATCAATCTCGTA-AG-TCTCATAGAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47135 : ATCAATCTTAAA-AAAT--TATAAAGAATAC-AAAAT---CAAGACTAGGGTAAACA
gi|47137 : ATCAATCTCATA-AC-GCCTGTAAGGAGTAC-AAAAT---TAAGAGATGGGCAAACA
gi|47138 : ATCCATTTTATA-AC-TCCTATAAGGCATAC-AAAAT---TAAGAACTGGGCAAACA
gi|47139 : TCAATCTTGTA-AG-TCCTAAATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47140 : TCAATCTCATA-AA-TCCTAAATGGAATGC-AATAT---TAAGAGTTGGGCAAAC
gi|47141 : TCAATCTCATA-CC-TCGTATAAGGAATAC-AAAAT---TAATAGTTGGGCAAACA
gi|47142 : CAATCTCATA-AC-TCCTA-AAAGAATGC-AAAAT---TAAGAGTAAGGCAA
gi|47143 : TCTCATA-A--TCCCATGAAGAATAC-AAAAT---TAAGAGTAGGGCAAACA
gi|47144 : CTTGTA-AA-TCCCATAAAGGATAC-AAAAT---TAAGAGTTTGGCAAACA
gi|47145 : CTGTAAAGAATAC-AAGAT---TAAGAGTAGGGCAAACA
gi|47146 : atgCTATAAAGGATAC-AAAAT---CAAGAGTAGGGCAAACA
blockSeqs : T AA . TAAA
blockSeqs : . A . T
blockSeqs : . C . T
blockSeqs : . C . T
blockSeqs : . A . T
blockSeqs : . T . T
blockSeqs : . A . T
blockSeqs : . T . T
blockSeqs : . A . T
blockSeqs : . G . A
blockSeqs : . C . T
blockSeqs : . A . A
blockSeqs : . C . A
blockSeqs : . G . A
blockSeqs : . G . A
blockSeqs : . G . A
blockSeqs : . C . G
blockSeqs : . G . A
blockSeqs : . G . C
blockSeqs : . G . A
blockSeqs : . A . A
blockSeqs : . A . T
blockSeqs : . G . T
blockSeqs : . C . T
blockSeqs : . C . A
blockSeqs : . G . T
blockSeqs : . A . T
blockSeqs : . C . T
blockSeqs : . C . T
blockSeqs : . A . T
blockSeqs : . . . T
blockSeqs : . T
blockSeqs : . .
blockSeqCons :
originalCons : ATCAATCTCATA-AN-TCCTATAAAGAATAC-AAAAT---CAAGAGTTGGGCAAACA
finalCons : ATCAATCTCATA-AN-TCCTATAAAGAATAC-AAAAT---CAAGAGTTGGGCAAACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|47122 ): ATAAATCTTATAACTTCTATGAAGAATGGAAAATTAAGAGTAGGGCAACCA
Unaligned ( gi|47136 ): ATCAATATCATAAATCCCATGAGGAATACGAAATTAAGATCAGGGTAAAC
Alignments
lowQualScore : 1 33 0 0 1 3333
lowQualScore : . .. . . . ....
lowQualScore : 2 55 9 5 2 3333
consensus : ATCAATCTCATA-AN-TCCTATAAAGAATAC-AAAAT---CAAGAGTTGGGCAAACA
Reference ( family-479 ) : ATCAATCTCATA-AN-TCCTATAAAGAATAC-AAAAT---CAAGAGTTGGGCAAACA
gi|47111 : ATCAATCTTATA-AA-TCCTATGAAGAATCCAAAAAT---TAAGAGCAGGGCAAACA
gi|47112 : ATCAACCTTACA-AA-TCTTATAAAGAATAC-AAAAT---TAAGAATTAGACAAACA
gi|47113 : ATCAATCTCATA-AC-TCCTACAAGGGATAC-AGAAT---TAAGAGTTGGGCAAACA
gi|47114 : ATCAATCTCATA-AC-TCCTGTAAGGAATAC-AAAAT---CAGGAGTTGGGCAAACA
gi|47115 : ATCAATCTCAAA-AA-TCCTGTAAAGAGTTC-AAAAT---TAAGGGTAGGGTAAACA
gi|47116 : ACCAATTTCATA-AT-TCCTATAAGGAATAC-AAAGT---TAAGAGTTGGGCAAACA
gi|47117 : ATTAGTCTTATA-AA-TCCCATAAAGAATGC-AAAAT---TCAGAGTGGGGTAAGCA
gi|47118 : ATCAATCTAATA-AT-TTCTATGAAGAATAC-AAAAT---TACGAGTAGGGAAAACA
gi|47119 : ATCATTCTCATA-AA-TCCTATACGGAATAC--AAAT---TAAGAGTTGGGCAAACA
gi|47120 : ATCAATCTCGTA-AG-TCCTATATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47121 : ATCAATCTCATA-AC--CCTACAAGGAATAC-AAAAT---TAAGAGTTTGGCAAACA
gi|47123 : ATCAATCTCGTA-AA-TCCTAAACAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47124 : ATCAATTTTATA-AC-TCTTATAAGAAATAC-AAAATAAATAAGAGTTGGGCAAACA
gi|47125 : ATCAATCTTGTA-AG-TCCTAAATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47126 : ATCAATCTCATA-AG-TCCTAAATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47127 : ATCAATCTTGTA-AG-TCCTATATAGAATAC-AAAAA---CAAGAGTTGGGCAATCA
gi|47128 : ATTAATCTCATA-AC-TTCTATAAAGGATGC-AAAAA---TAAGAGTAGGGCACACA
gi|47129 : ATCAATCTCATA-AG-TCCCATATAGAATAC-GAAAG---CAAGAGTTGGGCAAACA
gi|47130 : ATCAATCTTGCA-AG-TCCCAAAAAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47131 : ATCAATCTCATA-AG-TCCCAAATAGAATAC-AAAAC---CAAGAGTTGGGCAAACA
gi|47132 : ATCAATCTCATATAA-TCCCA-ATAGAATAC-AAAAA---CAAGAGTAGGGCAAACA
gi|47133 : ATCAATCTCACA-AA-TCCTAAATAGAATAC-AAAA----CAAGAGTTGGGCAAACA
gi|47134 : ATCAATCTCGTA-AG-TCTCATAGAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47135 : ATCAATCTTAAA-AAAT--TATAAAGAATAC-AAAAT---CAAGACTAGGGTAAACA
gi|47137 : ATCAATCTCATA-AC-GCCTGTAAGGAGTAC-AAAAT---TAAGAGATGGGCAAACA
gi|47138 : ATCCATTTTATA-AC-TCCTATAAGGCATAC-AAAAT---TAAGAACTGGGCAAACA
gi|47139 : TCAATCTTGTA-AG-TCCTAAATAGAATAC-AAAAA---CAAGAGTTGGGCAAACA
gi|47140 : TCAATCTCATA-AA-TCCTAAATGGAATGC-AATAT---TAAGAGTTGGGCAAAC
gi|47141 : TCAATCTCATA-CC-TCGTATAAGGAATAC-AAAAT---TAATAGTTGGGCAAACA
gi|47142 : CAATCTCATA-AC-TCCTA-AAAGAATGC-AAAAT---TAAGAGTAAGGCAA
gi|47143 : TCTCATA-A--TCCCATGAAGAATAC-AAAAT---TAAGAGTAGGGCAAACA
gi|47144 : CTTGTA-AA-TCCCATAAAGGATAC-AAAAT---TAAGAGTTTGGCAAACA
gi|47145 : CTGTAAAGAATAC-AAGAT---TAAGAGTAGGGCAAACA
gi|47146 : atgCTATAAAGGATAC-AAAAT---CAAGAGTAGGGCAAACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|47122 ): ATAAATCTTATAACTTCTATGAAGAATGGAAAATTAAGAGTAGGGCAACCA
Unaligned ( gi|47136 ): ATCAATATCATAAATCCCATGAGGAATACGAAATTAAGATCAGGGTAAAC