lowQualScore : 11 1 333 1 2 999999999999999999 1 3 1 22 1 1 2 1 222 1 1 88888888 1 222 5555 1 1
lowQualScore : .. . ... . . .................. . . . .. . . . . ... . . ........ . ... .... . .
lowQualScore : 66 1 666 1 2 777777777777777777 1 4 4 00 4 4 9 4 555 4 5 00000000 6 888 0000 7 8
consensus : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
Reference ( gi|79280 ) : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79281 : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCTAT-ATA
gi|79255 : AAAGCAATACAAG--CTGT-ATAAAC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AGATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79257 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAC-C-TA-C-T---C-AAATATGCA-CCAG--------T-T---AA----C-ACCTACCAAT-ATA
gi|79259 : tAAAGCAATACAAG--CTGT-A---AC-CGA-T------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAGTTAACAACT-T---AA----C-ACCTACCGAT-ATA
gi|79260 : tAGAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAAAATGCA-CAAT--------G-T---AA----C-ATCTACCGAT-ATA
gi|79264 : tAAAGAAATACAAA--CTGT-A---AC-TGA-C------------------GGC-ATTTAT-T--CA--C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ATCTACCGAT-ATA
gi|79261 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-GTTTTT----CAC-C-TA-C-A---C-AGATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79282 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A-TTTT-T--CAC-C-TA-T-A---C--AGTATGCA-CAAG--------T-T---AA----C-ATCTACCGAT-ATA
gi|79265 : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGT-A-TTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AAAATTA-ACATACCGAT-TTA
gi|79258 : tAAAGCAATACAAG--CTGT-A---AC-TGT-C------------------GGC-G-TTTT-T--CAA-C-TA-C-T---C-AAATAGTCACCAAGTT------T-T---AA----C-ACCTATCTAT-
gi|79283 : tAATGCAATGCAAG--CTGT-A---AC-TGA-C------------------GGT-A-TTAT-T--CAA-T-TA-C-TGGAC-GAATATGCA-CCAA--------T-T---AA----C-ACCTGCCAAT-ATA
gi|79269 : AAAG--ATA-AAG--CTGT-A---AC-TGA--------------------GGCAATTTTG-T--CAA-C-TA-C-T---C--AATATGCA--AGG--------T-T---AAG---C-ACTTAACGAT-
gi|79268 : tAAATCAATACAAG--CTGT-A---AC-TGA-C------------------GTT-ATT-------------TA-T-C---C-AAACATGCA-CCAA--------T-T---AA----C-ACCTATTGGT-AT
gi|79270 : tAAAGCAATACAAA--CTAT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAC-C-TA-C-A---C-A
gi|79271 : tAAAGCAATACAAT--CTGT-A---GC-TGA-T------------------AGT-A-TTTT-T--CAA-T-AA-C-T---C-AAATATGCA-CCAA--------TAT---AA----C-
gi|79284 : tAGAGCAATACAA---CTGT-A---AC-CGAGC------------------GG--ATGCTTGT--CAA-CGTA-CCT---T-GAATA-GCA-CCAG--------T-T---AA----C-ACCTACCGATGATA
gi|79272 : AAAGCAATACAAGACCTGTTA---AC-TG--T------------------GGC-ATTTTT-TTTCAC-C-TTTC-T---C-AA-TATGCA-CAAG--------C-T----A----C-ACCT
gi|79273 : tAAAGCAATACAAG--CTGT-G---AC-TGG-C------------------AGT-A-TTTT-T--CAA-C-TA-T-A---A-AAGTGTGCA-C
gi|79275 : tAAAGCAATACAAG--CTGT-A---ACCTGA-CTACAACTCTTAGGGCCCCGAC-ATTTT--T--CAA-C-TATC-T---C--AATATACA-CAAT--------T-T---A----------TACCGTT-ATA
gi|79279 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79278 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79277 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79276 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79267 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79266 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79263 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79256 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79285 : tAAGCAATGCAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-GTA
gi|79286 : AAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T----A----C-ACCTACCGAT-ATA
gi|79287 : AAG-AATACAAG--CTGT-A---AC-TGA-CTT----------------GAC-ATTTTT-T--CAAAC-TA-C-T---C-AAATATGC--CAAG--------T-T---AA----CAACTTACCGAT-ATA
gi|79262 : AGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTGT-T--CAC-C-TA-C-T---C-AAATATGCA-CCAG--------T-T---AA----T-ACCTACCGAT-ATA
gi|79288 : tatGTAATAGAAA--CTAT-A---AC-TAA-C------------------G-C-AATATT-G--CAA-C--A-C-T---CTACGTATGCA-CAAA--------T-T---AA----C-ACCTGCCGGT-AT
gi|79289 : AATACAAG--CTGT-ATA-AC-TGA-C------------------GGC-ATGTTT-T--CAC-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----
gi|79274 : ACAAG--CTGT-A---AC-TAAAC------------------TGT-AATATT-T--CAA-C-TG-C-T---T-AAATATGTC-CCAG--------T-TTAAAA----C-ACCTATCGAT-
gi|79290 : taatgcacaAAG--CTGT-A---AA-TGA-C------------------GGC-ATTTTT-T--CAA-C-CA-C-T---C-A
gi|79291 : GA-C------------------GGC-ATTTT--T--CAA-C-TA-C-T---C-AAATATACA-CCAG--------T-T---AC----C-GCCTATCAAT-ATA
Alignments
lowQualScore : 11 1 333 1 2 999999999999999999 1 2 1 11 1 1 2 1 222 1 1 77777777 1 222 4444 1 1
lowQualScore : .. . ... . . .................. . . . .. . . . . ... . . ........ . ... .... . .
lowQualScore : 55 1 555 1 2 555555555555555555 1 9 4 99 4 4 8 4 444 4 5 77777777 5 777 8888 6 7
consensus : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
Reference ( family-466 ) : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79255 : AAAGCAATACAAG--CTGT-ATAAAC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AGATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79256 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79257 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAC-C-TA-C-T---C-AAATATGCA-CCAG--------T-T---AA----C-ACCTACCAAT-ATA
gi|79258 : tAAAGCAATACAAG--CTGT-A---AC-TGT-C------------------GGC-G-TTTT-T--CAA-C-TA-C-T---C-AAATAGTCACCAAGTT------T-T---AA----C-ACCTATCTAT-
gi|79259 : tAAAGCAATACAAG--CTGT-A---AC-CGA-T------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAGTTAACAACT-T---AA----C-ACCTACCGAT-ATA
gi|79260 : tAGAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAAAATGCA-CAAT--------G-T---AA----C-ATCTACCGAT-ATA
gi|79261 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-GTTTTT----CAC-C-TA-C-A---C-AGATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79262 : tAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTGT-T--CAC-C-TA-C-T---C-AAATATGCA-CCAG--------T-T---AA----T-ACCTACCGAT-ATA
gi|79263 : tatAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79264 : tAAAGAAATACAAA--CTGT-A---AC-TGA-C------------------GGC-ATTTAT-T--CA--C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ATCTACCGAT-ATA
gi|79265 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGT-A-TTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AAAATTA-ACATACCGAT-TTA
gi|79266 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79267 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79268 : tAAATCAATACAAG--CTGT-A---AC-TGA-C------------------GTT-ATT-------------TA-T-C---C-AAACATGCA-CCAA--------T-T---AA----C-ACCTATTGGT-AT
gi|79269 : tAAAG--ATA-AAG--CTGT-A---AC-TGA--------------------GGCAATTTTG-T--CAA-C-TA-C-T---C--AATATGCA--AGG--------T-T---AAG---C-ACTTAACGAT-
gi|79270 : tAAAGCAATACAAA--CTAT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAC-C-TA-C-A---C-A
gi|79271 : tAAAGCAATACAAT--CTGT-A---GC-TGA-T------------------AGT-A-TTTT-T--CAA-T-AA-C-T---C-AAATATGCA-CCAA--------TAT---AA----C-
gi|79272 : tAAAGCAATACAAGACCTGTTA---AC-TG--T------------------GGC-ATTTTT-TTTCAC-C-TTTC-T---C-AA-TATGCA-CAAG--------C-T----A----C-ACCT
gi|79273 : tAAAGCAATACAAG--CTGT-G---AC-TGG-C------------------AGT-A-TTTT-T--CAA-C-TA-T-A---A-AAGTGTGCA-C
gi|79274 : tACAAG--CTGT-A---AC-TAAAC------------------TGT-AATATT-T--CAA-C-TG-C-T---T-AAATATGTC-CCAG--------T-TTAAAA----C-ACCTATCGAT-
gi|79275 : taatgcacaAAAGCAATACAAG--CTGT-A---ACCTGA-CTACAACTCTTAGGGCCCCGAC-ATTTT--T--CAA-C-TATC-T---C--AATATACA-CAAT--------T-T---A----------TACCGTT-ATA
gi|79276 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79277 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79278 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79279 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79280 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79281 : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCTAT-ATA
gi|79282 : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A-TTTT-T--CAC-C-TA-T-A---C--AGTATGCA-CAAG--------T-T---AA----C-ATCTACCGAT-ATA
gi|79283 : AATGCAATGCAAG--CTGT-A---AC-TGA-C------------------GGT-A-TTAT-T--CAA-T-TA-C-TGGAC-GAATATGCA-CCAA--------T-T---AA----C-ACCTGCCAAT-ATA
gi|79284 : AGAGCAATACAA---CTGT-A---AC-CGAGC------------------GG--ATGCTTGT--CAA-CGTA-CCT---T-GAATA-GCA-CCAG--------T-T---AA----C-ACCTACCGATGATA
gi|79285 : AAGCAATGCAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-GTA
gi|79286 : AAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T----A----C-ACCTACCGAT-ATA
gi|79287 : AAG-AATACAAG--CTGT-A---AC-TGA-CTT----------------GAC-ATTTTT-T--CAAAC-TA-C-T---C-AAATATGC--CAAG--------T-T---AA----CAACTTACCGAT-ATA
gi|79288 : GTAATAGAAA--CTAT-A---AC-TAA-C------------------G-C-AATATT-G--CAA-C--A-C-T---CTACGTATGCA-CAAA--------T-T---AA----C-ACCTGCCGGT-AT
gi|79289 : AATACAAG--CTGT-ATA-AC-TGA-C------------------GGC-ATGTTT-T--CAC-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----
gi|79290 : AAG--CTGT-A---AA-TGA-C------------------GGC-ATTTTT-T--CAA-C-CA-C-T---C-A
gi|79291 : GA-C------------------GGC-ATTTT--T--CAA-C-TA-C-T---C-AAATATACA-CCAG--------T-T---AC----C-GCCTATCAAT-ATA
Alignments
lowQualScore : 11 1 333 1 2 999999999999999999 1 2 1 11 1 1 2 1 222 1 1 77777777 1 222 4444 1 1
lowQualScore : .. . ... . . .................. . . . .. . . . . ... . . ........ . ... .... . .
lowQualScore : 55 1 555 1 2 555555555555555555 1 9 4 99 4 4 8 4 444 4 5 77777777 5 777 8888 6 7
consensus : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
Reference ( family-466 ) : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79255 : AAAGCAATACAAG--CTGT-ATAAAC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AGATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79256 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79257 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAC-C-TA-C-T---C-AAATATGCA-CCAG--------T-T---AA----C-ACCTACCAAT-ATA
gi|79258 : tAAAGCAATACAAG--CTGT-A---AC-TGT-C------------------GGC-G-TTTT-T--CAA-C-TA-C-T---C-AAATAGTCACCAAGTT------T-T---AA----C-ACCTATCTAT-
gi|79259 : tAAAGCAATACAAG--CTGT-A---AC-CGA-T------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAGTTAACAACT-T---AA----C-ACCTACCGAT-ATA
gi|79260 : tAGAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAAAATGCA-CAAT--------G-T---AA----C-ATCTACCGAT-ATA
gi|79261 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-GTTTTT----CAC-C-TA-C-A---C-AGATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79262 : tAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTGT-T--CAC-C-TA-C-T---C-AAATATGCA-CCAG--------T-T---AA----T-ACCTACCGAT-ATA
gi|79263 : tatAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79264 : tAAAGAAATACAAA--CTGT-A---AC-TGA-C------------------GGC-ATTTAT-T--CA--C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ATCTACCGAT-ATA
gi|79265 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGT-A-TTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AAAATTA-ACATACCGAT-TTA
gi|79266 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79267 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79268 : tAAATCAATACAAG--CTGT-A---AC-TGA-C------------------GTT-ATT-------------TA-T-C---C-AAACATGCA-CCAA--------T-T---AA----C-ACCTATTGGT-AT
gi|79269 : tAAAG--ATA-AAG--CTGT-A---AC-TGA--------------------GGCAATTTTG-T--CAA-C-TA-C-T---C--AATATGCA--AGG--------T-T---AAG---C-ACTTAACGAT-
gi|79270 : tAAAGCAATACAAA--CTAT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAC-C-TA-C-A---C-A
gi|79271 : tAAAGCAATACAAT--CTGT-A---GC-TGA-T------------------AGT-A-TTTT-T--CAA-T-AA-C-T---C-AAATATGCA-CCAA--------TAT---AA----C-
gi|79272 : tAAAGCAATACAAGACCTGTTA---AC-TG--T------------------GGC-ATTTTT-TTTCAC-C-TTTC-T---C-AA-TATGCA-CAAG--------C-T----A----C-ACCT
gi|79273 : tAAAGCAATACAAG--CTGT-G---AC-TGG-C------------------AGT-A-TTTT-T--CAA-C-TA-T-A---A-AAGTGTGCA-C
gi|79274 : tACAAG--CTGT-A---AC-TAAAC------------------TGT-AATATT-T--CAA-C-TG-C-T---T-AAATATGTC-CCAG--------T-TTAAAA----C-ACCTATCGAT-
gi|79275 : taatgcacaAAAGCAATACAAG--CTGT-A---ACCTGA-CTACAACTCTTAGGGCCCCGAC-ATTTT--T--CAA-C-TATC-T---C--AATATACA-CAAT--------T-T---A----------TACCGTT-ATA
gi|79276 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79277 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79278 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79279 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79280 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79281 : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCTAT-ATA
gi|79282 : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A-TTTT-T--CAC-C-TA-T-A---C--AGTATGCA-CAAG--------T-T---AA----C-ATCTACCGAT-ATA
gi|79283 : AATGCAATGCAAG--CTGT-A---AC-TGA-C------------------GGT-A-TTAT-T--CAA-T-TA-C-TGGAC-GAATATGCA-CCAA--------T-T---AA----C-ACCTGCCAAT-ATA
gi|79284 : AGAGCAATACAA---CTGT-A---AC-CGAGC------------------GG--ATGCTTGT--CAA-CGTA-CCT---T-GAATA-GCA-CCAG--------T-T---AA----C-ACCTACCGATGATA
gi|79285 : AAGCAATGCAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-GTA
gi|79286 : AAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T----A----C-ACCTACCGAT-ATA
gi|79287 : AAG-AATACAAG--CTGT-A---AC-TGA-CTT----------------GAC-ATTTTT-T--CAAAC-TA-C-T---C-AAATATGC--CAAG--------T-T---AA----CAACTTACCGAT-ATA
gi|79288 : GTAATAGAAA--CTAT-A---AC-TAA-C------------------G-C-AATATT-G--CAA-C--A-C-T---CTACGTATGCA-CAAA--------T-T---AA----C-ACCTGCCGGT-AT
gi|79289 : AATACAAG--CTGT-ATA-AC-TGA-C------------------GGC-ATGTTT-T--CAC-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----
gi|79290 : AAG--CTGT-A---AA-TGA-C------------------GGC-ATTTTT-T--CAA-C-CA-C-T---C-A
gi|79291 : GA-C------------------GGC-ATTTT--T--CAA-C-TA-C-T---C-AAATATACA-CCAG--------T-T---AC----C-GCCTATCAAT-ATA
blockSeqs : AC T TA C A TACAACTCTTAGGGCCCC A T G TT A G T C GGA T C TTAACAAC A TAA AATT A G
blockSeqs : . . . . G TT . T . . . . T . . . . TT . . G . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . .
blockSeqCons : ***
originalCons : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
finalCons : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
Alignments
lowQualScore : 11 1 333 1 2 999999999999999999 1 2 1 11 1 1 2 1 222 1 1 77777777 1 222 4444 1 1
lowQualScore : .. . ... . . .................. . . . .. . . . . ... . . ........ . ... .... . .
lowQualScore : 55 1 555 1 2 555555555555555555 1 9 4 99 4 4 8 4 444 4 5 77777777 5 777 8888 6 7
consensus : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
Reference ( family-466 ) : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79255 : AAAGCAATACAAG--CTGT-ATAAAC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AGATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79256 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79257 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAC-C-TA-C-T---C-AAATATGCA-CCAG--------T-T---AA----C-ACCTACCAAT-ATA
gi|79258 : tAAAGCAATACAAG--CTGT-A---AC-TGT-C------------------GGC-G-TTTT-T--CAA-C-TA-C-T---C-AAATAGTCACCAAGTT------T-T---AA----C-ACCTATCTAT-
gi|79259 : tAAAGCAATACAAG--CTGT-A---AC-CGA-T------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAGTTAACAACT-T---AA----C-ACCTACCGAT-ATA
gi|79260 : tAGAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAAAATGCA-CAAT--------G-T---AA----C-ATCTACCGAT-ATA
gi|79261 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-GTTTTT----CAC-C-TA-C-A---C-AGATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79262 : tAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTGT-T--CAC-C-TA-C-T---C-AAATATGCA-CCAG--------T-T---AA----T-ACCTACCGAT-ATA
gi|79263 : tatAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79264 : tAAAGAAATACAAA--CTGT-A---AC-TGA-C------------------GGC-ATTTAT-T--CA--C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ATCTACCGAT-ATA
gi|79265 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGT-A-TTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AAAATTA-ACATACCGAT-TTA
gi|79266 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79267 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79268 : tAAATCAATACAAG--CTGT-A---AC-TGA-C------------------GTT-ATT-------------TA-T-C---C-AAACATGCA-CCAA--------T-T---AA----C-ACCTATTGGT-AT
gi|79269 : tAAAG--ATA-AAG--CTGT-A---AC-TGA--------------------GGCAATTTTG-T--CAA-C-TA-C-T---C--AATATGCA--AGG--------T-T---AAG---C-ACTTAACGAT-
gi|79270 : tAAAGCAATACAAA--CTAT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAC-C-TA-C-A---C-A
gi|79271 : tAAAGCAATACAAT--CTGT-A---GC-TGA-T------------------AGT-A-TTTT-T--CAA-T-AA-C-T---C-AAATATGCA-CCAA--------TAT---AA----C-
gi|79272 : tAAAGCAATACAAGACCTGTTA---AC-TG--T------------------GGC-ATTTTT-TTTCAC-C-TTTC-T---C-AA-TATGCA-CAAG--------C-T----A----C-ACCT
gi|79273 : tAAAGCAATACAAG--CTGT-G---AC-TGG-C------------------AGT-A-TTTT-T--CAA-C-TA-T-A---A-AAGTGTGCA-C
gi|79274 : tACAAG--CTGT-A---AC-TAAAC------------------TGT-AATATT-T--CAA-C-TG-C-T---T-AAATATGTC-CCAG--------T-TTAAAA----C-ACCTATCGAT-
gi|79275 : taatgcacaAAAGCAATACAAG--CTGT-A---ACCTGA-CTACAACTCTTAGGGCCCCGAC-ATTTT--T--CAA-C-TATC-T---C--AATATACA-CAAT--------T-T---A----------TACCGTT-ATA
gi|79276 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79277 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79278 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79279 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A
gi|79280 : tAAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-ATA
gi|79281 : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCTAT-ATA
gi|79282 : AAAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-A-TTTT-T--CAC-C-TA-T-A---C--AGTATGCA-CAAG--------T-T---AA----C-ATCTACCGAT-ATA
gi|79283 : AATGCAATGCAAG--CTGT-A---AC-TGA-C------------------GGT-A-TTAT-T--CAA-T-TA-C-TGGAC-GAATATGCA-CCAA--------T-T---AA----C-ACCTGCCAAT-ATA
gi|79284 : AGAGCAATACAA---CTGT-A---AC-CGAGC------------------GG--ATGCTTGT--CAA-CGTA-CCT---T-GAATA-GCA-CCAG--------T-T---AA----C-ACCTACCGATGATA
gi|79285 : AAGCAATGCAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----C-ACCTACCGAT-GTA
gi|79286 : AAGCAATACAAG--CTGT-A---AC-TGA-C------------------GGC-ATTTTT-T--CAA-C-TA-C-T---C-AAATATGCA-CAAG--------T-T----A----C-ACCTACCGAT-ATA
gi|79287 : AAG-AATACAAG--CTGT-A---AC-TGA-CTT----------------GAC-ATTTTT-T--CAAAC-TA-C-T---C-AAATATGC--CAAG--------T-T---AA----CAACTTACCGAT-ATA
gi|79288 : GTAATAGAAA--CTAT-A---AC-TAA-C------------------G-C-AATATT-G--CAA-C--A-C-T---CTACGTATGCA-CAAA--------T-T---AA----C-ACCTGCCGGT-AT
gi|79289 : AATACAAG--CTGT-ATA-AC-TGA-C------------------GGC-ATGTTT-T--CAC-C-TA-C-T---C-AAATATGCA-CAAG--------T-T---AA----
gi|79290 : AAG--CTGT-A---AA-TGA-C------------------GGC-ATTTTT-T--CAA-C-CA-C-T---C-A
gi|79291 : GA-C------------------GGC-ATTTT--T--CAA-C-TA-C-T---C-AAATATACA-CCAG--------T-T---AC----C-GCCTATCAAT-ATA