lowQualScore : 11
lowQualScore : 1 2 1 1 2 1 2 1 88 44444 1 666666666 1 1 1 222 333 22 333 1 1 66
lowQualScore : . . . . . . . . .. ..... . ......... . . . ... ... .. ... . . ..
lowQualScore : 1 2 1 1 1 1 1 1 88 55555 1 111111111 1 1 1 999 999 55 333 1 2 11
consensus : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
Reference ( gi|65715 ) : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65717 : AAGAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65721 : AATATATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-A-AATTTA----T---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65725 : AATAAATAG-AGGATATT-C-AG-T-G-TTT-T--GT-----T-GT---------TGGAGAG-A-T-GCTTTAT--TT---TCA--CAA-GTGAGA-CAG-CT--TTTT
gi|65726 : AGTATATAG-TGGATATT-C-AA-T-A-TTT-T--GT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TCA--CTA-GTGAGA-CAG-G
gi|65728 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAAATAG-A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65729 : AATTAATAATAGAAAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CTT-GTGAGA-CAG-G--ATTTT
gi|65730 : AAAAAATAG-AGGATATT-C-AA-T-G-CTT-T--TT-----A-GT---------TGGATAT-G-T-AATTCA---TT---TCA--CGA-GTGAGA-CAG-
gi|65723 : AATAAATAG-AAGAT--T-C-AA-T-GATTT-T--GT-----T-GT---------TAGATAG-A-T-AATTTA---TT---TCA--CTC-GTGAGA-CGG-G--ATTTT
gi|65731 : AATACATAG-AGAATATT-A-AA-T-G-TTT-T--GT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TTA--TAA-GTGAGA-CAG-G--ATT
gi|65722 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TCTGT-----T-GT---------TAGAGAG-A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65720 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAGATCG-A-G-AATTTA---TT---TTA--CTC-GTGAGA-CAG-G--ATTTT
gi|65732 : AATAAATAG-TGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TTGGGAG-A-G-AATTTC---TT---TCA--C
gi|65733 : AAGAAATAA---GATATT-C-AA-T-G-TTT-T--GT-----A-GT---------TGGA-AT-G-G-AATTTA---TT---TCA--C-A-G-GAGA-CAG-G--ATCTT
gi|65716 : AATAAATAG-AAAGTTGT-T-AA-T-G-TTT-TT-GC-----T-GT---------TAGATAG-A-G-AATTTA---TA---TCA--CTC-GTGAGA-CCG-G--ATTTT
gi|65718 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-ACATG------TAGATA--A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65727 : AATAAACAG--GAAGATT-C-AA-T-A-TTT-T--TT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TCA--CTT-GTGAGA-CA
gi|65724 : AATAGATAG-A--ATATT-C-AA-T-GCTTT-T--GC-----T-GT---------TAGATAGAA-G-CAATTATCTTT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65719 : AATAAATAG-A--AAATT-C-AA-T-A-TTTCT--GA-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCA--CTT-GTGAAA-
gi|65734 : ATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65735 : ATACATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTAAGA-CAG-GT-ATTTT
gi|65736 : ATATATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCC--CGA-GTGAGA-CAG-GT-ATTT
gi|65737 : ATAAATAG-AGGATATT-C-AAAT-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGACGTGAGA-CGG-GT-ATTTT
gi|65738 : ATATATAG-CGGATATT-C-AA-T-A-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTCA---TT---TTA--CGA-GTGAAA-CAG-GT-ATTTT
gi|65739 : ATAAATAG-AAAAT-TT-C-AA-TTG-TTT-T--GT-----T-GT---------TGGATAG-A-GAAACTTA---TT---TCA--CTT-GTGAGA-C-G-GA-ATTT
gi|65740 : ATAAGTAG-AAGACATT-C-AA-T-G-CTT-T--GTACACGTAGT---------TGGATTT-T-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-TT-TTTTT
gi|65741 : ATCAATAG-AGAACATT-C-GA-T-G-CTT-T--GTACA--T-GT---------------------AATT-A---TT---TCA--CGA-GTGAGA-CAG-GT-TTTTT
gi|65742 : TAAACAG-A--AAACT-C-AA-T-C-TTT-T---T-----T-GT---------TGGATAT-G-G-AATTCA---GT---TCA--CGA-GTGAGA-CAG-GT-
gi|65743 : AAATA--AGAAAATT-C-AAGT-G-TTT-TT-GT-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCACTCAA-TTGAGA-CAG-G--ATTTT
gi|65744 : AAATAG-AG-ATATT-C-AA-T-G-ATT-T--GT-----T-GT---------TCGATAG-A-G-AA-TTA---TT---TCAG-CGA-GTGA
gi|65745 : ATAG-AGGATATT-C-AA-T-G-TTT-T--GA-----T-GT---------TGGATAG-ACG-AATTTA---TT---TCA--CGA-GTGAGACCAG-GT-TTTTT
gi|65746 : ATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GTTGGCTTGTGTGGATAG-A-G-ATTTTA---TTC--TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65747 : ATAG-AGGATAGT-C-AA-T-G-GTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TTA--TCA--C-A-GTGAGA-CAG-GG-ATTTT
gi|65748 : ATAA-AGGATATTAC-AA-T-G-TTT----GT-----T-GT---------TGGATAG-A-G-AATTTA----T---TCA--CGA-GTGAGA-CAT-GTAATTTT
gi|65749 : TAG-AGGTTATT-C-AA-T-G-TTT-T--GT-----A-GT---------TGGATAT-T-G-AATTTA---TT---TCA--TGA-GTGAGA-CAG-G--ATT
gi|65750 : -AGGAAAAT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAGATAG-A-G-AATAAA---CT---TCA--CTC-GTGAGA-CAG-G--ATTCT
gi|65751 : GGATATT-C-AA-T-G-TTG-T--GT-----T-GA---------TAGATAT-A-G-AATTTA---TA---TCA--TGG-GTGGGA-CAG-G--ATTTT
gi|65752 : GGTATT-CCAA-T-G-TTT----GT-----T-GT---------TGGATAG---G-AATTGA---TTCAGTCA--CGA-GTGAGA-CAGTAT-ATTT
gi|65753 : ACATT-C-GA-T-G-TTT-T--CT-----T--T---------TGGATAA-A-A-AATTTA---TT---TTT--CGA-GTGAGA-CAG-GA-AT
Alignments
lowQualScore : 11
lowQualScore : 1 1 1 1 2 1 2 1 88 44444 1 555555555 1 1 1 222 333 22 222 1 1 55
lowQualScore : . . . . . . . . .. ..... . ......... . . . ... ... .. ... . . ..
lowQualScore : 1 9 0 0 1 0 1 0 66 44444 0 999999999 0 0 0 888 888 44 777 1 1 33
consensus : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
Reference ( family-446 ) : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65715 : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65716 : AATAAATAG-AAAGTTGT-T-AA-T-G-TTT-TT-GC-----T-GT---------TAGATAG-A-G-AATTTA---TA---TCA--CTC-GTGAGA-CCG-G--ATTTT
gi|65717 : AAGAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65718 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-ACATG------TAGATA--A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65719 : AATAAATAG-A--AAATT-C-AA-T-A-TTTCT--GA-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCA--CTT-GTGAAA-
gi|65720 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAGATCG-A-G-AATTTA---TT---TTA--CTC-GTGAGA-CAG-G--ATTTT
gi|65721 : AATATATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-A-AATTTA----T---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65722 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TCTGT-----T-GT---------TAGAGAG-A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65723 : AATAAATAG-AAGAT--T-C-AA-T-GATTT-T--GT-----T-GT---------TAGATAG-A-T-AATTTA---TT---TCA--CTC-GTGAGA-CGG-G--ATTTT
gi|65724 : AATAGATAG-A--ATATT-C-AA-T-GCTTT-T--GC-----T-GT---------TAGATAGAA-G-CAATTATCTTT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65725 : AATAAATAG-AGGATATT-C-AG-T-G-TTT-T--GT-----T-GT---------TGGAGAG-A-T-GCTTTAT--TT---TCA--CAA-GTGAGA-CAG-CT--TTTT
gi|65726 : AGTATATAG-TGGATATT-C-AA-T-A-TTT-T--GT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TCA--CTA-GTGAGA-CAG-G
gi|65727 : AATAAACAG--GAAGATT-C-AA-T-A-TTT-T--TT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TCA--CTT-GTGAGA-CA
gi|65728 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAAATAG-A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65729 : AATTAATAATAGAAAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CTT-GTGAGA-CAG-G--ATTTT
gi|65730 : AAAAAATAG-AGGATATT-C-AA-T-G-CTT-T--TT-----A-GT---------TGGATAT-G-T-AATTCA---TT---TCA--CGA-GTGAGA-CAG-
gi|65731 : AATACATAG-AGAATATT-A-AA-T-G-TTT-T--GT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TTA--TAA-GTGAGA-CAG-G--ATT
gi|65732 : AATAAATAG-TGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TTGGGAG-A-G-AATTTC---TT---TCA--C
gi|65733 : AAGAAATAA---GATATT-C-AA-T-G-TTT-T--GT-----A-GT---------TGGA-AT-G-G-AATTTA---TT---TCA--C-A-G-GAGA-CAG-G--ATCTT
gi|65734 : ATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65735 : ATACATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTAAGA-CAG-GT-ATTTT
gi|65736 : ATATATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCC--CGA-GTGAGA-CAG-GT-ATTT
gi|65737 : ATAAATAG-AGGATATT-C-AAAT-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGACGTGAGA-CGG-GT-ATTTT
gi|65738 : ATATATAG-CGGATATT-C-AA-T-A-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTCA---TT---TTA--CGA-GTGAAA-CAG-GT-ATTTT
gi|65739 : ATAAATAG-AAAAT-TT-C-AA-TTG-TTT-T--GT-----T-GT---------TGGATAG-A-GAAACTTA---TT---TCA--CTT-GTGAGA-C-G-GA-ATTT
gi|65740 : ATAAGTAG-AAGACATT-C-AA-T-G-CTT-T--GTACACGTAGT---------TGGATTT-T-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-TT-TTTTT
gi|65741 : ATCAATAG-AGAACATT-C-GA-T-G-CTT-T--GTACA--T-GT---------------------AATT-A---TT---TCA--CGA-GTGAGA-CAG-GT-TTTTT
gi|65742 : TAAACAG-A--AAACT-C-AA-T-C-TTT-T---T-----T-GT---------TGGATAT-G-G-AATTCA---GT---TCA--CGA-GTGAGA-CAG-GT-
gi|65743 : AAATA--AGAAAATT-C-AAGT-G-TTT-TT-GT-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCACTCAA-TTGAGA-CAG-G--ATTTT
gi|65744 : AAATAG-AG-ATATT-C-AA-T-G-ATT-T--GT-----T-GT---------TCGATAG-A-G-AA-TTA---TT---TCAG-CGA-GTGA
gi|65745 : ATAG-AGGATATT-C-AA-T-G-TTT-T--GA-----T-GT---------TGGATAG-ACG-AATTTA---TT---TCA--CGA-GTGAGACCAG-GT-TTTTT
gi|65746 : ATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GTTGGCTTGTGTGGATAG-A-G-ATTTTA---TTC--TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65747 : ATAG-AGGATAGT-C-AA-T-G-GTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TTA--TCA--C-A-GTGAGA-CAG-GG-ATTTT
gi|65748 : ATAA-AGGATATTAC-AA-T-G-TTT----GT-----T-GT---------TGGATAG-A-G-AATTTA----T---TCA--CGA-GTGAGA-CAT-GTAATTTT
gi|65749 : TAG-AGGTTATT-C-AA-T-G-TTT-T--GT-----A-GT---------TGGATAT-T-G-AATTTA---TT---TCA--TGA-GTGAGA-CAG-G--ATT
gi|65750 : -AGGAAAAT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAGATAG-A-G-AATAAA---CT---TCA--CTC-GTGAGA-CAG-G--ATTCT
gi|65751 : GGATATT-C-AA-T-G-TTG-T--GT-----T-GA---------TAGATAT-A-G-AATTTA---TA---TCA--TGG-GTGGGA-CAG-G--ATTTT
gi|65752 : GGTATT-CCAA-T-G-TTT----GT-----T-GT---------TGGATAG---G-AATTGA---TTCAGTCA--CGA-GTGAGA-CAGTAT-ATTT
gi|65753 : ACATT-C-GA-T-G-TTT-T--CT-----T--T---------TGGATAA-A-A-AATTTA---TT---TTT--CGA-GTGAGA-CAG-GA-AT
Alignments
lowQualScore : 11
lowQualScore : 1 1 1 1 2 1 2 1 88 44444 1 555555555 1 1 1 222 333 22 222 1 1 55
lowQualScore : . . . . . . . . .. ..... . ......... . . . ... ... .. ... . . ..
lowQualScore : 1 9 0 0 1 0 1 0 66 44444 0 999999999 0 0 0 888 888 44 777 1 1 33
consensus : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
Reference ( family-446 ) : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65715 : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65716 : AATAAATAG-AAAGTTGT-T-AA-T-G-TTT-TT-GC-----T-GT---------TAGATAG-A-G-AATTTA---TA---TCA--CTC-GTGAGA-CCG-G--ATTTT
gi|65717 : AAGAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65718 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-ACATG------TAGATA--A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65719 : AATAAATAG-A--AAATT-C-AA-T-A-TTTCT--GA-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCA--CTT-GTGAAA-
gi|65720 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAGATCG-A-G-AATTTA---TT---TTA--CTC-GTGAGA-CAG-G--ATTTT
gi|65721 : AATATATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-A-AATTTA----T---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65722 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TCTGT-----T-GT---------TAGAGAG-A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65723 : AATAAATAG-AAGAT--T-C-AA-T-GATTT-T--GT-----T-GT---------TAGATAG-A-T-AATTTA---TT---TCA--CTC-GTGAGA-CGG-G--ATTTT
gi|65724 : AATAGATAG-A--ATATT-C-AA-T-GCTTT-T--GC-----T-GT---------TAGATAGAA-G-CAATTATCTTT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65725 : AATAAATAG-AGGATATT-C-AG-T-G-TTT-T--GT-----T-GT---------TGGAGAG-A-T-GCTTTAT--TT---TCA--CAA-GTGAGA-CAG-CT--TTTT
gi|65726 : AGTATATAG-TGGATATT-C-AA-T-A-TTT-T--GT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TCA--CTA-GTGAGA-CAG-G
gi|65727 : AATAAACAG--GAAGATT-C-AA-T-A-TTT-T--TT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TCA--CTT-GTGAGA-CA
gi|65728 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAAATAG-A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65729 : AATTAATAATAGAAAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CTT-GTGAGA-CAG-G--ATTTT
gi|65730 : AAAAAATAG-AGGATATT-C-AA-T-G-CTT-T--TT-----A-GT---------TGGATAT-G-T-AATTCA---TT---TCA--CGA-GTGAGA-CAG-
gi|65731 : AATACATAG-AGAATATT-A-AA-T-G-TTT-T--GT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TTA--TAA-GTGAGA-CAG-G--ATT
gi|65732 : AATAAATAG-TGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TTGGGAG-A-G-AATTTC---TT---TCA--C
gi|65733 : AAGAAATAA---GATATT-C-AA-T-G-TTT-T--GT-----A-GT---------TGGA-AT-G-G-AATTTA---TT---TCA--C-A-G-GAGA-CAG-G--ATCTT
gi|65734 : ATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65735 : ATACATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTAAGA-CAG-GT-ATTTT
gi|65736 : ATATATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCC--CGA-GTGAGA-CAG-GT-ATTT
gi|65737 : ATAAATAG-AGGATATT-C-AAAT-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGACGTGAGA-CGG-GT-ATTTT
gi|65738 : ATATATAG-CGGATATT-C-AA-T-A-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTCA---TT---TTA--CGA-GTGAAA-CAG-GT-ATTTT
gi|65739 : ATAAATAG-AAAAT-TT-C-AA-TTG-TTT-T--GT-----T-GT---------TGGATAG-A-GAAACTTA---TT---TCA--CTT-GTGAGA-C-G-GA-ATTT
gi|65740 : ATAAGTAG-AAGACATT-C-AA-T-G-CTT-T--GTACACGTAGT---------TGGATTT-T-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-TT-TTTTT
gi|65741 : ATCAATAG-AGAACATT-C-GA-T-G-CTT-T--GTACA--T-GT---------------------AATT-A---TT---TCA--CGA-GTGAGA-CAG-GT-TTTTT
gi|65742 : TAAACAG-A--AAACT-C-AA-T-C-TTT-T---T-----T-GT---------TGGATAT-G-G-AATTCA---GT---TCA--CGA-GTGAGA-CAG-GT-
gi|65743 : AAATA--AGAAAATT-C-AAGT-G-TTT-TT-GT-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCACTCAA-TTGAGA-CAG-G--ATTTT
gi|65744 : AAATAG-AG-ATATT-C-AA-T-G-ATT-T--GT-----T-GT---------TCGATAG-A-G-AA-TTA---TT---TCAG-CGA-GTGA
gi|65745 : ATAG-AGGATATT-C-AA-T-G-TTT-T--GA-----T-GT---------TGGATAG-ACG-AATTTA---TT---TCA--CGA-GTGAGACCAG-GT-TTTTT
gi|65746 : ATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GTTGGCTTGTGTGGATAG-A-G-ATTTTA---TTC--TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65747 : ATAG-AGGATAGT-C-AA-T-G-GTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TTA--TCA--C-A-GTGAGA-CAG-GG-ATTTT
gi|65748 : ATAA-AGGATATTAC-AA-T-G-TTT----GT-----T-GT---------TGGATAG-A-G-AATTTA----T---TCA--CGA-GTGAGA-CAT-GTAATTTT
gi|65749 : TAG-AGGTTATT-C-AA-T-G-TTT-T--GT-----A-GT---------TGGATAT-T-G-AATTTA---TT---TCA--TGA-GTGAGA-CAG-G--ATT
gi|65750 : -AGGAAAAT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAGATAG-A-G-AATAAA---CT---TCA--CTC-GTGAGA-CAG-G--ATTCT
gi|65751 : GGATATT-C-AA-T-G-TTG-T--GT-----T-GA---------TAGATAT-A-G-AATTTA---TA---TCA--TGG-GTGGGA-CAG-G--ATTTT
gi|65752 : GGTATT-CCAA-T-G-TTT----GT-----T-GT---------TGGATAG---G-AATTGA---TTCAGTCA--CGA-GTGAGA-CAGTAT-ATTT
gi|65753 : ACATT-C-GA-T-G-TTT-T--CT-----T--T---------TGGATAA-A-A-AATTTA---TT---TTT--CGA-GTGAGA-CAG-GA-AT
blockSeqs : T A A C A T A C CT ACACG A TGGCTTGTG A C A TCT CAG CT GAC C T TA
blockSeqs : . G . . G . C . T ACA . ATG . . . T C G TC . . T
blockSeqs : . G . . . . . . T . . . . . . . A . GA . . T
blockSeqs : . A . . . . . . T . . . . . . . . . TC . . T
blockSeqs : . G . . . . . . T . . . . . . . . . TT . . T
blockSeqs : . G . . . . . . T . . . . . . . . . TC . . T
blockSeqs : . G . . . . . . T . . . . . . . . . GA . . T
blockSeqs : . G . . . . . . T . . . . . . . . . TC . . T
blockSeqs : . G . . . . . . . . . . . . . . . . TC . . T
blockSeqs : . G . . . . . . . . . . . . . . . . TC . . A
blockSeqs : . G . . . . . . . . . . . . . . . . AA . . T
blockSeqs : . G . . . . . . . . . . . . . . . . TA . . T
blockSeqs : . G . . . . . . . . . . . . . . . . TT . . T
blockSeqs : . G . . . . . . . . . . . . . . . . TC . . T
blockSeqs : . G . . . . . . . . . . . . . . . . TT . . T
blockSeqs : . G . . . . . . . . . . . . . . . . GA . . G
blockSeqs : . A . . . . . . . . . . . . . . . . AA . . T
blockSeqs : . A . . . . . . . . . . . . . . . . GA . . A
blockSeqs : . G . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . G . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . G . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . G . . . . . . . . . . . . . . . . TT . . .
blockSeqs : . G . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . G . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . G . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . G . . . . . . . . . . . . . . . . AA . . .
blockSeqs : . G . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . G . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . . . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . . . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . . . . . . . . . . . . . . . . . . GA . . .
blockSeqs : . . . . . . . . . . . . . . . . . . TC . . .
blockSeqs : . . . . . . . . . . . . . . . . . . GG . .
blockSeqs : . . . . . . . . . . . . . . . . . . GA . .
blockSeqs : . . . . . . . . . . . . . . . . . . GA .
blockSeqs : . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
finalCons : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
Alignments
lowQualScore : 11
lowQualScore : 1 1 1 1 2 1 2 1 88 44444 1 555555555 1 1 1 222 333 22 222 1 1 55
lowQualScore : . . . . . . . . .. ..... . ......... . . . ... ... .. ... . . ..
lowQualScore : 1 9 0 0 1 0 1 0 66 44444 0 999999999 0 0 0 888 888 44 777 1 1 33
consensus : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
Reference ( family-446 ) : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65715 : AATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65716 : AATAAATAG-AAAGTTGT-T-AA-T-G-TTT-TT-GC-----T-GT---------TAGATAG-A-G-AATTTA---TA---TCA--CTC-GTGAGA-CCG-G--ATTTT
gi|65717 : AAGAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65718 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-ACATG------TAGATA--A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65719 : AATAAATAG-A--AAATT-C-AA-T-A-TTTCT--GA-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCA--CTT-GTGAAA-
gi|65720 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAGATCG-A-G-AATTTA---TT---TTA--CTC-GTGAGA-CAG-G--ATTTT
gi|65721 : AATATATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-A-AATTTA----T---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65722 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TCTGT-----T-GT---------TAGAGAG-A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65723 : AATAAATAG-AAGAT--T-C-AA-T-GATTT-T--GT-----T-GT---------TAGATAG-A-T-AATTTA---TT---TCA--CTC-GTGAGA-CGG-G--ATTTT
gi|65724 : AATAGATAG-A--ATATT-C-AA-T-GCTTT-T--GC-----T-GT---------TAGATAGAA-G-CAATTATCTTT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65725 : AATAAATAG-AGGATATT-C-AG-T-G-TTT-T--GT-----T-GT---------TGGAGAG-A-T-GCTTTAT--TT---TCA--CAA-GTGAGA-CAG-CT--TTTT
gi|65726 : AGTATATAG-TGGATATT-C-AA-T-A-TTT-T--GT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TCA--CTA-GTGAGA-CAG-G
gi|65727 : AATAAACAG--GAAGATT-C-AA-T-A-TTT-T--TT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TCA--CTT-GTGAGA-CA
gi|65728 : AATAAATAG-A--AAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAAATAG-A-G-AATTTA---TT---TCA--CTC-GTGAGA-CAG-G--ATTTT
gi|65729 : AATTAATAATAGAAAATT-C-AA-T-G-TTT-TT-GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CTT-GTGAGA-CAG-G--ATTTT
gi|65730 : AAAAAATAG-AGGATATT-C-AA-T-G-CTT-T--TT-----A-GT---------TGGATAT-G-T-AATTCA---TT---TCA--CGA-GTGAGA-CAG-
gi|65731 : AATACATAG-AGAATATT-A-AA-T-G-TTT-T--GT-----A-GT---------TGGATAT-G-G-AATTTA---TT---TTA--TAA-GTGAGA-CAG-G--ATT
gi|65732 : AATAAATAG-TGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TTGGGAG-A-G-AATTTC---TT---TCA--C
gi|65733 : AAGAAATAA---GATATT-C-AA-T-G-TTT-T--GT-----A-GT---------TGGA-AT-G-G-AATTTA---TT---TCA--C-A-G-GAGA-CAG-G--ATCTT
gi|65734 : ATAAATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65735 : ATACATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGA-GTAAGA-CAG-GT-ATTTT
gi|65736 : ATATATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCC--CGA-GTGAGA-CAG-GT-ATTT
gi|65737 : ATAAATAG-AGGATATT-C-AAAT-G-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TT---TCA--CGACGTGAGA-CGG-GT-ATTTT
gi|65738 : ATATATAG-CGGATATT-C-AA-T-A-TTT-T--GT-----T-GT---------TGGATAG-A-G-AATTCA---TT---TTA--CGA-GTGAAA-CAG-GT-ATTTT
gi|65739 : ATAAATAG-AAAAT-TT-C-AA-TTG-TTT-T--GT-----T-GT---------TGGATAG-A-GAAACTTA---TT---TCA--CTT-GTGAGA-C-G-GA-ATTT
gi|65740 : ATAAGTAG-AAGACATT-C-AA-T-G-CTT-T--GTACACGTAGT---------TGGATTT-T-G-AATTTA---TT---TCA--CGA-GTGAGA-CAG-TT-TTTTT
gi|65741 : ATCAATAG-AGAACATT-C-GA-T-G-CTT-T--GTACA--T-GT---------------------AATT-A---TT---TCA--CGA-GTGAGA-CAG-GT-TTTTT
gi|65742 : TAAACAG-A--AAACT-C-AA-T-C-TTT-T---T-----T-GT---------TGGATAT-G-G-AATTCA---GT---TCA--CGA-GTGAGA-CAG-GT-
gi|65743 : AAATA--AGAAAATT-C-AAGT-G-TTT-TT-GT-----T-GT---------TAGATAG-A-G-AATTTA---TT---TCACTCAA-TTGAGA-CAG-G--ATTTT
gi|65744 : AAATAG-AG-ATATT-C-AA-T-G-ATT-T--GT-----T-GT---------TCGATAG-A-G-AA-TTA---TT---TCAG-CGA-GTGA
gi|65745 : ATAG-AGGATATT-C-AA-T-G-TTT-T--GA-----T-GT---------TGGATAG-ACG-AATTTA---TT---TCA--CGA-GTGAGACCAG-GT-TTTTT
gi|65746 : ATAG-AGGATATT-C-AA-T-G-TTT-T--GT-----T-GTTGGCTTGTGTGGATAG-A-G-ATTTTA---TTC--TCA--CGA-GTGAGA-CAG-GT-ATTTT
gi|65747 : ATAG-AGGATAGT-C-AA-T-G-GTT-T--GT-----T-GT---------TGGATAG-A-G-AATTTA---TTA--TCA--C-A-GTGAGA-CAG-GG-ATTTT
gi|65748 : ATAA-AGGATATTAC-AA-T-G-TTT----GT-----T-GT---------TGGATAG-A-G-AATTTA----T---TCA--CGA-GTGAGA-CAT-GTAATTTT
gi|65749 : TAG-AGGTTATT-C-AA-T-G-TTT-T--GT-----A-GT---------TGGATAT-T-G-AATTTA---TT---TCA--TGA-GTGAGA-CAG-G--ATT
gi|65750 : -AGGAAAAT-C-AA-T-G-TTT-TT-GT-----T-GT---------TAGATAG-A-G-AATAAA---CT---TCA--CTC-GTGAGA-CAG-G--ATTCT
gi|65751 : GGATATT-C-AA-T-G-TTG-T--GT-----T-GA---------TAGATAT-A-G-AATTTA---TA---TCA--TGG-GTGGGA-CAG-G--ATTTT
gi|65752 : GGTATT-CCAA-T-G-TTT----GT-----T-GT---------TGGATAG---G-AATTGA---TTCAGTCA--CGA-GTGAGA-CAGTAT-ATTT
gi|65753 : ACATT-C-GA-T-G-TTT-T--CT-----T--T---------TGGATAA-A-A-AATTTA---TT---TTT--CGA-GTGAGA-CAG-GA-AT