lowQualScore                  :                                      11111                            
lowQualScore                  :    1  777   1     1  2             1 66666 1        111 5  11       0 
lowQualScore                  :    .  ...   .     .  .             . ..... .        ... .  ..       . 
lowQualScore                  :    2  333   1     1  2             1 44444 1        999 9  55       7 
consensus                     : TTG-CATT-CAG-AAGGT-CC-AAATTTTGGTTGT-C---A-A-CTTTAAAT---GAGT--TATATTTTT
Reference ( gi|102611 )       : TTG-CATC-CAG-AAGGT-CC-AAATTTTGGTTGT-C---C-A-CTTTAAAT---GGGT--TATATTTCT
gi|102612                     : TTG-CATT-CAG-AAGGT-CC-GGATTTTGCTTGT-C---A-A-CTTTAAAT---GAGT--TGTATTTTT
gi|102609                     : TTA-CACT-CAG-AAGGT-CC-AAATTTTGGTTGT-T---A-A-CTTTGAAT---GAAT--TATATTT
gi|102617                     : TTG-CATT-CAG-AAGGC-CC-AAATTTTGGTTGT-C---A-A-CTTTAGAG---ATGT--TATATTt
gi|102613                     : TTA-CAAT-CAGTAAGGT-CC-AAATTTTGGTTGT-C---A-A-CTTTAAAT---GCGT--CATATTTTTctt
gi|102614                     : TTG-CACT-CAG-AAGGT-CT-AACTTTTGGTTGT-C---A-A-CATTGAAT---GAGT--TATATTT
gi|102619                     : TTGTCATT-CAG-AAGGT-CC-AAATTTTGGTGGT-C---A-A-CTTTGAAT---GAGC--TATAt
gi|102618                     : TTG-CATT-CAG-AAGGG-CC-AAATTTTTGTTGT-C---A-A-CTTTAAAT---GAGT--AATcattttt
gi|102628                     : TTG-CATT-CAG-AGGGT-CC-AAATTTTGG-TGT-CAGGC-AGTTTTAAAT---GAGT--TATATT
gi|102634                     : TTA-CACT-CAG-AAGGT-CC-AAATTTTGGTTGT-C---T-T-GTTTAAAT---GAGT--T-TATTctt
gi|102642                     : TTG-CATT-CAA-AAGGT-CC-AAAATTTGAATGT-A---G-A-CTTTGAAT---GGGT--TATATctt
gi|102624                     : TTG-CATT-CAA-AAGGT-CC-AAAATTTCATTGT-A---G-A-CTTTAAAT---GAGT--TATATCT
gi|102638                     : TTG-CATT-CAA-AAGGT-CCAAAATTTTAA-TGT-C---A-A-CTTTAAAT---GTAT--TATATTTt
gi|102630                     : TTG-CATT-CAG-AAGGTTCC-AAATTTTTGTTTT-C---A-A-CTTTGAAT---GAGT--TGTAATTTTt
gi|102629                     : TTG-CATT-CAG-GAGGT-CC-GCATTTAGGTTGT-C---A-A-CATTAAAT---GACT--TATATTTTT
gi|102623                     : TTG-CATT-CAA-AAGGT-CT-AAAATTTGAATGT-T---G-A-CTTTAAAT---GAAT--TATATTT
gi|102615                     : TTG-CAGT-CAA-AAAGT-CC-AACTTTTGGTTGT-C---A-A-CTTTAGAT---AAGT--CATATTt
gi|102622                     : TTG-CAGT-TAG-GAAGT-CC-AAATTTTGGTTTT-C---A-A-GTTCAAAT---AAGT--TATATTTCT
gi|102635                     : TTG-CATT-CAA-AAGGT-CC-AAAATTTGAATGT-A---G-A-CTTTAAAT---GAGT--TATGTCT
gi|102633                     : TTG-CACT-CAT-GAGCT-CC-AGATTTTAGTTGT-C---A-A-CTTTAAAT---GAGTAATATATTTt
gi|102637                     : TTG-CATT-CAA-AAGGT-CCCAAATTTTT-TTGT-A---G-A-CTTTAAAT---GAGT--TATGTTT
gi|102616                     : TTG-CAGT-CAG-AAAGT-CC-AAATTTTGGTTTT-C---A-A-CTTCAAGTATAAAGT--TATATTTTTt
gi|102631                     : TTG-CAGT-CAG-AAAGT-CT-AAATTTTGGTTTT-C---A-A-CTCCAAAT---AAGT--GATACTTCT
gi|102632                     : TTG-CAGT-CAG-AAAGT-CC-AGATTT-GGTTTT-C---A-A-CTTTGAAT---AAGT--TTTATTTCT
gi|102640                     : TTG-CATT-CAG----GT-CC-AAGTTTGGGCTGT-C---A-A-CTTTGAGT---GAGT--TATATTT
gi|102621                     : TTG-CAGT-CAG-AAAGT-TC-AAATTTTGGTTTT-C---A-A-CTTCAAAT---AAAT--TATCTTT
gi|102643                     : TTG-CATT-CAA-AAGGT-CC-AAAATTTGAATGT-A---G-A-TTTTAAAC---GAGT--TATATCT
gi|102636                     : TTG-TAGT-CAG-AAGGT-CC-AAATTTTGGTTTT-C---A-A-CTTCAAAT---t
gi|102620                     : TTG-CAGT-CAA-AAAGT-CC-AAATTTTGGTTTT-T---CAA-CTCCAGAT---GAGT--TATAaccattaagttaatatattt
gi|102641                     : TTG-CACT-CAA-AAGGT-CC-AAAATTTGGATGT-A---G-G-TTTTAAAT---GAGT--TATGTCT
gi|102644                     : TTG-CATT-CAA-AATGT-CC-AAAATTTGAATGT-T---G-A-CTTT-AAT---GAGT--TATATCTt
gi|102610                     : TTA-CAGCTCAG-AAGGT-CC--AATTTTGGTTGTGT---A-A-CTTTGAAT----GAT--TCTATTTt
gi|102645                     :  TG-CATT-CAG-AAGGT-CC-AAATTTTGGTTGT-T---A-A-CTTTGAAT---GAAT--TATATTTTTt
gi|102646                     :  TG-CATT-CAA-AAGGT-TC-AAAATTTGAATGT-A---G-A-CTTTAAAT---GAGT--TATGTTT
gi|102647                     :           AG-AAGGT-CC-ATATTTTGGTTGT-C---A-A-CTTTAAAT---GAGT--TATGTTTt
gi|102627                     :            G-AAAGT-TC-AAATTTTGGTTTT-C---A-A-CTTCAAAT---AAGT--TATATTt
gi|102626                     :   ttgctgtctG-AAAGT-TC-AAATTTTGGTTTT-C---A-A-CTTCAAAT---AAGT--TATATTctt
gi|102625                     :   ttgctgtctG-AAAGT-TC-AAATTTTGGTTTT-C---A-A-CTTCAAAT---AAGT--TATATTctt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|102639 ): TTGCATTCAAAAGGTCTAAAATTTGATGTTAACTTTAATGAGTTATGTCTT






Alignments
lowQualScore                  :           1  0    1     1  1   1      1    3333          222222 111  1  11 1  11      
lowQualScore                  :           .  .    .     .  .   .      .    ....          ...... ...  .  .. .  ..      
lowQualScore                  :           1  9    0     0  0   0      0    2222          999999 888  0  44 0  44      
consensus                     :        TTG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--ATTTTT
Reference ( family-442 )      :        TTG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--ATTTTT
gi|102609                     :        TTA-CACTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----TAACTTTGAA------T---GA-AT--T-AT--ATTTT
gi|102610                     :               TCAG-AAGGT-CC--AA-TTTTGG-TTGTG---TAACTTTGAA------T---GA--T--T-CT--ATTTT
gi|102611                     : ttacagcTTG-CATCCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CCACTTTAAA------T---GG-GT--T-AT--ATTTCT
gi|102612                     :        TTG-CATTCAG-AAGGT-CC-GGA-TTTTGC-TTGT----CAACTTTAAA------T---GA-GT--T-GT--ATTTTT
gi|102613                     :        TTA-CAATCAGTAAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GC-GT--C-AT--ATTTTT
gi|102614                     :        TTG-CACTCAG-AAGGT-CT-AAC-TTTTGG-TTGT----CAACATTGAA------T---GA-GT--T-AT--ATTTT
gi|102615                     :        TTG-CAGTCAA-AAAGT-CC-AAC-TTTTGG-TTGT----CAACTTTAGA------T---AA-GT--C-AT--ATT
gi|102616                     :        TTG-CAGTCAG-AAAGT-CC-AAA-TTTTGG-TTTT----CAACTTCAAG------TATAAA-GT--T-AT--ATTTTT
gi|102617                     :        TTG-CATTCAG-AAGGC-CC-AAA-TTTTGG-TTGT----CAACTTTAGA----------GATGT--T-AT--ATTCTT
gi|102618                     :        TTG-CATTCAG-AAGGG-CC-AAA-TTTTTG-TTGT----CAACTTTAAA------T---GA-GT--A-AT--
gi|102619                     :        TTGTCATTCAG-AAGGT-CC-AAA-TTTTGG-TGGT----CAACTTTGAA------T---GA-GC--T-ATACATTTTT
gi|102620                     :        TTG-CAGTCAA-AAAGT-CC-AAA-TTTTGGTTTTT----CAACTCCAGA------T---GA-GT--T-AT--
gi|102621                     :        TTG-CAGTCAG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-AT--T-AT--CTTT
gi|102622                     :        TTG-CAGTTAG-GAAGT-CC-AAA-TTTTGG-TTTT----CAAGTTCAAA------T---AA-GT--T-AT--ATTTCT
gi|102623                     :        TTG-CATTCAA-AAGGT-CT-AAA-ATTTGA-ATGT----TGACTTTAAA------T---GA-AT--T-AT--ATTTT
gi|102624                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTCA-TTGT----AGACTTTAAA------T---GA-GT--T-AT--ATCTT
gi|102625                     :        TTG-CTGTCTG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-GT--T-AT--ATTCTT
gi|102626                     :        TTG-CTGTCTG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-GT--T-AT--ATTCTT
gi|102627                     :        TTG-CTGTCTG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-GT--T-AT--ATTCTT
gi|102628                     :        TTG-CATTCAG-AGGGT-CC-AAA-TTTTGG--TGTCAGGCAGTTTTAAA------T---GA-GT--T-AT--ATTCTT
gi|102629                     :        TTG-CATTCAG-GAGGT-CC-GCA-TTTAGG-TTGT----CAACATTAAA------T---GA-CT--T-AT--ATTTTT
gi|102630                     :        TTG-CATTCAG-AAGGTTCC-AAA-TTTTTG-TTTT----CAACTTTGAA------T---GA-GT--T-GT--AATTTT
gi|102631                     :        TTG-CAGTCAG-AAAGT-CT-AAA-TTTTGG-TTTT----CAACTCCAAA------T---AA-GT--G-AT--ACTTCT
gi|102632                     :        TTG-CAGTCAG-AAAGT-CC-AGA-TTT-GG-TTTT----CAACTTTGAA------T---AA-GT--T-TT--ATTTCT
gi|102633                     :        TTG-CACTCAT-GAGCT-CC-AGA-TTTTAG-TTGT----CAACTTTAAA------T---GA-GTAAT-AT--ATTT
gi|102634                     :        TTA-CACTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CTTGTTTAAA------T---GA-GT--T--T--ATTCTT
gi|102635                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTGA-ATGT----AGACTTTAAA------T---GA-GT--T-AT--GTCTT
gi|102636                     :        TTG-TAGTCAG-AAGGT-CC-AAA-TTTTGG-TTTT----CAACTTCAAATACCATT---AA-GT--TAAT--ATATTT
gi|102637                     :        TTG-CATTCAA-AAGGT-CCCAAA-TTTTT--TTGT----AGACTTTAAA------T---GA-GT--T-AT--GTTTT
gi|102638                     :        TTG-CATTCAA-AAGGT-CC-AAAATTTTAA-T-GT----CAACTTTAAA------T---GT-AT--T-AT--ATTTT
gi|102639                     :        TTG-CATTCAA-AAGGT-CT-AAA-ATTTGA--TGT----TAACTTT-AA------T---GA-GT--T-AT--GTCTT
gi|102640                     :        TTG-CATTCAG----GT-CC-AAG-TTTGGG-CTGT----CAACTTTGAG------T---GA-GT--T-AT--ATTT
gi|102641                     :        TTG-CACTCAA-AAGGT-CC-AAA-ATTTGG-ATGT----AGGTTTTAAA------T---GA-GT--T-AT--GTCTT
gi|102642                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTGA-ATGT----AGACTTTGAA------T---GG-GT--T-AT--AT
gi|102643                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTGA-ATGT----AGATTTTAAA------C---GA-GT--T-AT--ATCTT
gi|102644                     :        TTG-CATTCAA-AATGT-CC-AAA-ATTTGA-ATGT----TGACTTT-AA------T---GA-GT--T-AT--ATCTT
gi|102645                     :         TG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----TAACTTTGAA------T---GA-AT--T-AT--ATTTTT
gi|102646                     :         TG-CATTCAA-AAGGT-TC-AAA-ATTTGA-ATGT----AGACTTTAAA------T---GA-GT--T-AT--GTTTT
gi|102647                     :                 AG-AAGGT-CC-ATA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--GTTTT





Alignments
lowQualScore                  :           1  0    1     1  1   1      1    3333          222222 111  1  11 1  11      
lowQualScore                  :           .  .    .     .  .   .      .    ....          ...... ...  .  .. .  ..      
lowQualScore                  :           1  9    0     0  0   0      0    2222          999999 888  0  44 0  44      
consensus                     :        TTG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--ATTTTT
Reference ( family-442 )      :        TTG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--ATTTTT
gi|102609                     :        TTA-CACTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----TAACTTTGAA------T---GA-AT--T-AT--ATTTT
gi|102610                     :               TCAG-AAGGT-CC--AA-TTTTGG-TTGTG---TAACTTTGAA------T---GA--T--T-CT--ATTTT
gi|102611                     : ttacagcTTG-CATCCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CCACTTTAAA------T---GG-GT--T-AT--ATTTCT
gi|102612                     :        TTG-CATTCAG-AAGGT-CC-GGA-TTTTGC-TTGT----CAACTTTAAA------T---GA-GT--T-GT--ATTTTT
gi|102613                     :        TTA-CAATCAGTAAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GC-GT--C-AT--ATTTTT
gi|102614                     :        TTG-CACTCAG-AAGGT-CT-AAC-TTTTGG-TTGT----CAACATTGAA------T---GA-GT--T-AT--ATTTT
gi|102615                     :        TTG-CAGTCAA-AAAGT-CC-AAC-TTTTGG-TTGT----CAACTTTAGA------T---AA-GT--C-AT--ATT
gi|102616                     :        TTG-CAGTCAG-AAAGT-CC-AAA-TTTTGG-TTTT----CAACTTCAAG------TATAAA-GT--T-AT--ATTTTT
gi|102617                     :        TTG-CATTCAG-AAGGC-CC-AAA-TTTTGG-TTGT----CAACTTTAGA----------GATGT--T-AT--ATTCTT
gi|102618                     :        TTG-CATTCAG-AAGGG-CC-AAA-TTTTTG-TTGT----CAACTTTAAA------T---GA-GT--A-AT--
gi|102619                     :        TTGTCATTCAG-AAGGT-CC-AAA-TTTTGG-TGGT----CAACTTTGAA------T---GA-GC--T-ATACATTTTT
gi|102620                     :        TTG-CAGTCAA-AAAGT-CC-AAA-TTTTGGTTTTT----CAACTCCAGA------T---GA-GT--T-AT--
gi|102621                     :        TTG-CAGTCAG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-AT--T-AT--CTTT
gi|102622                     :        TTG-CAGTTAG-GAAGT-CC-AAA-TTTTGG-TTTT----CAAGTTCAAA------T---AA-GT--T-AT--ATTTCT
gi|102623                     :        TTG-CATTCAA-AAGGT-CT-AAA-ATTTGA-ATGT----TGACTTTAAA------T---GA-AT--T-AT--ATTTT
gi|102624                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTCA-TTGT----AGACTTTAAA------T---GA-GT--T-AT--ATCTT
gi|102625                     :        TTG-CTGTCTG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-GT--T-AT--ATTCTT
gi|102626                     :        TTG-CTGTCTG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-GT--T-AT--ATTCTT
gi|102627                     :        TTG-CTGTCTG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-GT--T-AT--ATTCTT
gi|102628                     :        TTG-CATTCAG-AGGGT-CC-AAA-TTTTGG--TGTCAGGCAGTTTTAAA------T---GA-GT--T-AT--ATTCTT
gi|102629                     :        TTG-CATTCAG-GAGGT-CC-GCA-TTTAGG-TTGT----CAACATTAAA------T---GA-CT--T-AT--ATTTTT
gi|102630                     :        TTG-CATTCAG-AAGGTTCC-AAA-TTTTTG-TTTT----CAACTTTGAA------T---GA-GT--T-GT--AATTTT
gi|102631                     :        TTG-CAGTCAG-AAAGT-CT-AAA-TTTTGG-TTTT----CAACTCCAAA------T---AA-GT--G-AT--ACTTCT
gi|102632                     :        TTG-CAGTCAG-AAAGT-CC-AGA-TTT-GG-TTTT----CAACTTTGAA------T---AA-GT--T-TT--ATTTCT
gi|102633                     :        TTG-CACTCAT-GAGCT-CC-AGA-TTTTAG-TTGT----CAACTTTAAA------T---GA-GTAAT-AT--ATTT
gi|102634                     :        TTA-CACTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CTTGTTTAAA------T---GA-GT--T--T--ATTCTT
gi|102635                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTGA-ATGT----AGACTTTAAA------T---GA-GT--T-AT--GTCTT
gi|102636                     :        TTG-TAGTCAG-AAGGT-CC-AAA-TTTTGG-TTTT----CAACTTCAAATACCATT---AA-GT--TAAT--ATATTT
gi|102637                     :        TTG-CATTCAA-AAGGT-CCCAAA-TTTTT--TTGT----AGACTTTAAA------T---GA-GT--T-AT--GTTTT
gi|102638                     :        TTG-CATTCAA-AAGGT-CC-AAAATTTTAA-T-GT----CAACTTTAAA------T---GT-AT--T-AT--ATTTT
gi|102639                     :        TTG-CATTCAA-AAGGT-CT-AAA-ATTTGA--TGT----TAACTTT-AA------T---GA-GT--T-AT--GTCTT
gi|102640                     :        TTG-CATTCAG----GT-CC-AAG-TTTGGG-CTGT----CAACTTTGAG------T---GA-GT--T-AT--ATTT
gi|102641                     :        TTG-CACTCAA-AAGGT-CC-AAA-ATTTGG-ATGT----AGGTTTTAAA------T---GA-GT--T-AT--GTCTT
gi|102642                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTGA-ATGT----AGACTTTGAA------T---GG-GT--T-AT--AT
gi|102643                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTGA-ATGT----AGATTTTAAA------C---GA-GT--T-AT--ATCTT
gi|102644                     :        TTG-CATTCAA-AATGT-CC-AAA-ATTTGA-ATGT----TGACTTT-AA------T---GA-GT--T-AT--ATCTT
gi|102645                     :         TG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----TAACTTTGAA------T---GA-AT--T-AT--ATTTTT
gi|102646                     :         TG-CATTCAA-AAGGT-TC-AAA-ATTTGA-ATGT----AGACTTTAAA------T---GA-GT--T-AT--GTTTT
gi|102647                     :                 AG-AAGGT-CC-ATA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--GTTTT


blockSeqs                     :           T       T     T  C   A      T    CAGG          TACCAT ATA  T  AA A  AC
blockSeqs                     :           .       .     .  .   .      .    G             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :           .       .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :                   .     .  .   .      .    .             .      .    .  .  .  . 
blockSeqs                     :                   .     .  .   .      .    .             .      .    .  .  .  . 


blockSeqCons                  :        
originalCons                  :        TTG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--ATTTTT
finalCons                     :        TTG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--ATTTTT





Alignments
lowQualScore                  :           1  0    1     1  1   1      1    3333          222222 111  1  11 1  11      
lowQualScore                  :           .  .    .     .  .   .      .    ....          ...... ...  .  .. .  ..      
lowQualScore                  :           1  9    0     0  0   0      0    2222          999999 888  0  44 0  44      
consensus                     :        TTG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--ATTTTT
Reference ( family-442 )      :        TTG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--ATTTTT
gi|102609                     :        TTA-CACTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----TAACTTTGAA------T---GA-AT--T-AT--ATTTT
gi|102610                     :               TCAG-AAGGT-CC--AA-TTTTGG-TTGTG---TAACTTTGAA------T---GA--T--T-CT--ATTTT
gi|102611                     : ttacagcTTG-CATCCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CCACTTTAAA------T---GG-GT--T-AT--ATTTCT
gi|102612                     :        TTG-CATTCAG-AAGGT-CC-GGA-TTTTGC-TTGT----CAACTTTAAA------T---GA-GT--T-GT--ATTTTT
gi|102613                     :        TTA-CAATCAGTAAGGT-CC-AAA-TTTTGG-TTGT----CAACTTTAAA------T---GC-GT--C-AT--ATTTTT
gi|102614                     :        TTG-CACTCAG-AAGGT-CT-AAC-TTTTGG-TTGT----CAACATTGAA------T---GA-GT--T-AT--ATTTT
gi|102615                     :        TTG-CAGTCAA-AAAGT-CC-AAC-TTTTGG-TTGT----CAACTTTAGA------T---AA-GT--C-AT--ATT
gi|102616                     :        TTG-CAGTCAG-AAAGT-CC-AAA-TTTTGG-TTTT----CAACTTCAAG------TATAAA-GT--T-AT--ATTTTT
gi|102617                     :        TTG-CATTCAG-AAGGC-CC-AAA-TTTTGG-TTGT----CAACTTTAGA----------GATGT--T-AT--ATTCTT
gi|102618                     :        TTG-CATTCAG-AAGGG-CC-AAA-TTTTTG-TTGT----CAACTTTAAA------T---GA-GT--A-AT--
gi|102619                     :        TTGTCATTCAG-AAGGT-CC-AAA-TTTTGG-TGGT----CAACTTTGAA------T---GA-GC--T-ATACATTTTT
gi|102620                     :        TTG-CAGTCAA-AAAGT-CC-AAA-TTTTGGTTTTT----CAACTCCAGA------T---GA-GT--T-AT--
gi|102621                     :        TTG-CAGTCAG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-AT--T-AT--CTTT
gi|102622                     :        TTG-CAGTTAG-GAAGT-CC-AAA-TTTTGG-TTTT----CAAGTTCAAA------T---AA-GT--T-AT--ATTTCT
gi|102623                     :        TTG-CATTCAA-AAGGT-CT-AAA-ATTTGA-ATGT----TGACTTTAAA------T---GA-AT--T-AT--ATTTT
gi|102624                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTCA-TTGT----AGACTTTAAA------T---GA-GT--T-AT--ATCTT
gi|102625                     :        TTG-CTGTCTG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-GT--T-AT--ATTCTT
gi|102626                     :        TTG-CTGTCTG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-GT--T-AT--ATTCTT
gi|102627                     :        TTG-CTGTCTG-AAAGT-TC-AAA-TTTTGG-TTTT----CAACTTCAAA------T---AA-GT--T-AT--ATTCTT
gi|102628                     :        TTG-CATTCAG-AGGGT-CC-AAA-TTTTGG--TGTCAGGCAGTTTTAAA------T---GA-GT--T-AT--ATTCTT
gi|102629                     :        TTG-CATTCAG-GAGGT-CC-GCA-TTTAGG-TTGT----CAACATTAAA------T---GA-CT--T-AT--ATTTTT
gi|102630                     :        TTG-CATTCAG-AAGGTTCC-AAA-TTTTTG-TTTT----CAACTTTGAA------T---GA-GT--T-GT--AATTTT
gi|102631                     :        TTG-CAGTCAG-AAAGT-CT-AAA-TTTTGG-TTTT----CAACTCCAAA------T---AA-GT--G-AT--ACTTCT
gi|102632                     :        TTG-CAGTCAG-AAAGT-CC-AGA-TTT-GG-TTTT----CAACTTTGAA------T---AA-GT--T-TT--ATTTCT
gi|102633                     :        TTG-CACTCAT-GAGCT-CC-AGA-TTTTAG-TTGT----CAACTTTAAA------T---GA-GTAAT-AT--ATTT
gi|102634                     :        TTA-CACTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----CTTGTTTAAA------T---GA-GT--T--T--ATTCTT
gi|102635                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTGA-ATGT----AGACTTTAAA------T---GA-GT--T-AT--GTCTT
gi|102636                     :        TTG-TAGTCAG-AAGGT-CC-AAA-TTTTGG-TTTT----CAACTTCAAATACCATT---AA-GT--TAAT--ATATTT
gi|102637                     :        TTG-CATTCAA-AAGGT-CCCAAA-TTTTT--TTGT----AGACTTTAAA------T---GA-GT--T-AT--GTTTT
gi|102638                     :        TTG-CATTCAA-AAGGT-CC-AAAATTTTAA-T-GT----CAACTTTAAA------T---GT-AT--T-AT--ATTTT
gi|102639                     :        TTG-CATTCAA-AAGGT-CT-AAA-ATTTGA--TGT----TAACTTT-AA------T---GA-GT--T-AT--GTCTT
gi|102640                     :        TTG-CATTCAG----GT-CC-AAG-TTTGGG-CTGT----CAACTTTGAG------T---GA-GT--T-AT--ATTT
gi|102641                     :        TTG-CACTCAA-AAGGT-CC-AAA-ATTTGG-ATGT----AGGTTTTAAA------T---GA-GT--T-AT--GTCTT
gi|102642                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTGA-ATGT----AGACTTTGAA------T---GG-GT--T-AT--AT
gi|102643                     :        TTG-CATTCAA-AAGGT-CC-AAA-ATTTGA-ATGT----AGATTTTAAA------C---GA-GT--T-AT--ATCTT
gi|102644                     :        TTG-CATTCAA-AATGT-CC-AAA-ATTTGA-ATGT----TGACTTT-AA------T---GA-GT--T-AT--ATCTT
gi|102645                     :         TG-CATTCAG-AAGGT-CC-AAA-TTTTGG-TTGT----TAACTTTGAA------T---GA-AT--T-AT--ATTTTT
gi|102646                     :         TG-CATTCAA-AAGGT-TC-AAA-ATTTGA-ATGT----AGACTTTAAA------T---GA-GT--T-AT--GTTTT
gi|102647                     :                 AG-AAGGT-CC-ATA-TTTTGG-TTGT----CAACTTTAAA------T---GA-GT--T-AT--GTTTT