lowQualScore : 7777 111111 11111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111111 22222 1111111
lowQualScore : 4 4 1111 222222 00000 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 4444 1 4 1 1 1 1 4 11 0 0 0 44 0 11 88 1 0 0 0 0 7777777 0 22222 22 66666 22 777 3333 11 0 0 4444444444444 3 222 0 1 1 33333 1 3 1 11 1 22 0 55 0 44 1 1 2 1 1 9999999 1 44444 1 5 1 1 2222 2222 1 2 3 1 1 1 2 2 2 1 33 2
lowQualScore : . . .... ...... ..... ..................................................................................................... . . .... . . . . . . . .. . . . .. . .. .. . . . . . ....... . ..... .. ..... .. ... .... .. . . ............. . ... . . . ..... . . . .. . .. . .. . .. . . . . . ....... . ..... . . . . .... .... . . . . . . . . . . .. .
lowQualScore : 4 4 7777 888888 00000 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 2 2222 2 8 2 2 2 1 6 33 9 9 9 44 9 33 77 7 8 8 8 8 5555555 3 00000 22 44444 66 666 8888 11 8 8 2222222222222 1 222 8 5 5 00000 5 1 4 00 4 44 7 77 7 55 2 2 4 2 2 4444444 4 00000 1 2 1 1 4444 4444 2 4 1 2 2 2 4 4 5 2 00 5
consensus : TTTATCC-C-GCTTCAGACAAA-TTTGTTG------AT-----TT----------------------A------------------------C--------------------------G--------------------------C-CCCGAAAT-T----TT-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CA-C-AC-GACG-----C--C-TC--A--AA---T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-CA-C-AC-GACG-----C-CCC-GAA-AT----T----TTCAAT-ATT-ANGTC-TCCT-T-TC-A-ATT-GT-G--AC-GTCAC
Reference ( gi|87775 ) : TTTATCC-C-GCTTCAGAC----TTTGTTG------AT-----TT----------------------A------------------------T--------------------------G--------------------------C-CCTGAAAT-T----TT-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-TC-A-A-C-GAGT-CG-T-AA-GATG-----C--C-TC--A--AA---T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-CG-T-AA-GATG-----C-CTC-AAA-AT----T----TTCAAT-ATT-AGGTC-TCCT-T-TC-A-ATT-GT-G--AT-GTCAC
gi|87771 : TTTATCC-T-GCTTCAGACAAA-TTTGTTG------AT-----TT----------------------A------------------------T--------------------------GATTGGACAAAAACGAATCACATGACAC-CCTGAAAT-T----TT-CAATATT-AGG-TATCCC-T-TC-A-ATTG--T-G-A-T--G-T--CA-GA-A-A-C-GAGT-CA-T-AC-GACG-----C--C-CCA-A--AA---T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--
gi|87772 : TTTATCC-T-GCTTCAGACAAA-TTTGTTG------AT-----TT----------------------A------------------------TATTTGGACAAAAACGAATCACATGATG--------------------------C-CCTGAAAT-T----TT-GAATATT-AGG-TCTCCT-T-TC-ATATTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CA-C-AT-GATG-----C--T-CC--A--AAA--T----T--TT-CAAT-A-------------TT-ATG---TC-TACT-T-T-----T-A-ATT-G--T-G--A-T--G-TCAC--
gi|87774 : TTTATCC-C-GCTTCAGACAAATTTTGTTG------AT-----TT----------------------AATGATTGACAAAAACGAATCAATAC--------------------------G--------------------------C-CCTGAAAT-T----TT-CAATATTCAGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-CC-ATA-CGGAGT-CACT-AT-TAAG-----C--C-CCA-A--AA---T----T--TT-CAAT-A-------------TA-AGG---TC-ACCT-T-T-----C---ATT-G--T-G--A-TG-G-TCAC--
gi|87773 : TTTATTC-CTGCTTCAGACAAATTTTGTTGATTTATAT-----TTTGGACAAAAAACGAATCACATGA------------------------T--------------------------G--------------------------C-CCTGAAAT-T----TT-GAATATTTAGG-TCTCC--T-TC-ATATTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CA-C-AT-GATG-----C--T-CCA-A--AA---T----T--TA-TAAT-A-------------TT-ATG---TC-TACT-T-T-----T-A-AAT-G--T-G--A-T--G-TCAC--
gi|87776 : TTTATCC-C-ACTTCAGACAAA-TTTGCTG------AT-----AT----------------------A------------------------T--------------------------G--------------------------
gi|87780 : TTATTC-T-GCTTCAGACAAA-TTTGTTG------AT-----AT----------------------A------------------------T--------------------------G--------------------------attggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgtattagtttgacaactgtgatgtcacttgcaaatcattcgatgccccgaaatttcc
gi|87781 : TTATCC-C-GCTTCAGACAAA-TTTCTTG------AT-----TT----------------------A------------------------T--------------------------G--------------------------attggacaaaaacgaatcacatgatgccctgaaagttttaatattacatctctgttcaactgtgacgtcacttacgaggcatacgacacccataaatttaaatattacgtctctgttcaactatgatgtcac
gi|87783 : TATCC-C-GCTTCAGACAAA-TTTGTTG------AT-----TT----------------------A------------------------T--------------------------GATTGGACAAAAACGAATCACATGACGC-CCTGAAAT-T----TT-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CA-T-AC-GATG-----T--C-CCG-A--AA---T----T--TT-CAAT-A-------------TT-AAG---TC-TCCT-T-T-----T-A-ATT-G--T-G--A-C--G-TAAC--attggacaaaaacgaatcac
gi|87784 : TATCCGC-GCTTCAGACAA--TCTGTTG------ATTATGATTGGACAAAAACGAATCACATG--A------------------------C--------------------------G--------------------------CACCTAAAAT-T----TT-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T---A-CCAA-A-C-G-GT-CA-C-AT-GATG-----C--C-CCA-A--AA---T----T--TC-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--TGG--A-T--G-TCAC--
gi|87802 : -----TT----------------------A------------------------A--------------------------G--------------------------C-CCCAAAAT-T----TT-CAATATA-AGG-TCACCT-T-TC---ATTG--T-G-A-TG-G-TCACA-TT-A-----GAGTCCA-T-GGCGACG-----T--C-CCG-A--AA---T----T--TT-CAAT-A-------------TA-ACG---TC--CCT-T-T-------A-ATTGG--T-GAAA-C--G-TCAC--
gi|87809 : gagtcactaT----------------------A------------------------C--------------------------G--------------------------C-CCTGAAAT-T----TT-CAATATTCAGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-
gi|87794 : aacgaatcaa----------------------A------------------------T--------------------------G--------------------------C-CTCAAAAT-T----TT-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CG-T-AA-GATG-----C--C-TCA-A--AA---T----T--TT-CAAT-A--------------T-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--c
gi|87795 : ttgtgatgtcaccaacgagtcgtaag----------------------A------------------------T--------------------------G--------------------------C-CTCAAAAT-T----TT-CAATAT--AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-TA-T-AACGACA-----C--C--CAGA--AA---T----T--TT-CAGT-A-------------TT-ATG---TC-TCCT-T-T-----T-A-ATT-G--T-G--A-T--G-TCAC--
gi|87789 : ttgtgatgtcaccaacgagtcgtaag----------------------A------------------------C--------------------------G--------------------------C-CCCAAAAT-T----TT-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CA-T-AC-GACG-----C--C-CCG-A--AA---T----T--TT-CTAT-A-------------TT-ACG---TC-TCCT-T-T-----T-A-ATT-G--T-G--A-C--G-TCA
gi|87800 : ttgtgatgtcagaaacgagtcatacg----------------------A------------------------C--------------------------G--------------------------C-CCCAAAAT-T----TT-CAATATT-AGG-TCTCCTGTATC-A-ATTG--T-GAA-TG-G-T--CA-CC-A-A-T-GAGT-CA-T-AACGACG-----C--C--CAGA--AA---CTCGGT--TT-CAAT-A-------------TT--GG---TC-TCCT-T-T-----TAA-ATT-G--T-G--A-C--G-TCAC--
gi|87799 : aaacgagtcattacg----------------------A------------------------T--------------------------G--------------------------C-CCCAAAAT-T----TC-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--TGG-A-T--G-T--CA-CCAA-A-T-GAGT-C--C-AA-TACGAACGTC--C-GCA-A--AA---T----T--TT-CAATGA-------------GT-ACG---TCTTCCT-T-T-----T-A-ATTGG--T-G--A-C--G-TCAC--
gi|87791 : aaacggtcacatg----------------------A------------------------T--------------------------G--------------------------C-TCCAAAAT-T----TT-CAATATT-ATG-TCTACT-T-TT-A-ATTG--T-G-A-T--G-T--CACTT-A-A-C------------A-GAGG-----C--T-TC--G--AA---A----T--TT-CAAT-A-------------CA-CCA---TC-TCCT-T-G-----C-A-----G--A-G--A-T--G-T
gi|87788 : ttgtgatgtcaccaacgagtcacatg----------------------A------------------------T--------------------------G--------------------------T-CCCGAAAT-T----TT-CAATATT-AAG-TCTCCT-T-TT-A-ATTG--T-G-A-C--G-T--AACTT-A-A-C------------A-GACG-----C--T-TC--G--GA---A----T--TT-CAAT-A-------------
gi|87790 : ttgtgatgtcaccaacgagtcatacg----------------------A------------------------C--------------------------G--------------------------C-CCCGAAAT-T----TT-CTATATT-ACG-TCTCCT-T-TT-A-ATTG--T-G-A-C--G-T--CA-
gi|87780 : ttgtgatgtcaccaacgagtcatacg----------------------A------------------------T--------------------------G--------------------------C-CCTGAAAG-T----TT-TAATATT-ACA-TCTCTG-T-TC-A-ACTG--T-G-A-C--G-T--CA-CT-T-A-C-GAGG-CA-T-AC-GACA-----C--C--C--AT-AA---A----T--TT-AAAT-A-------------TT-ACG---TC-TCTG-T-T-----C-A-ACT-A--T-G--A-T--G-TCAC--
gi|87792 : ttattctgcttcagacaaatttgttgatatatgattggacaaaaacgaatcacatg----------------------A------------------------T--------------------------G--------------------------C-TCCAAAAT-T----TA-TAATATT-ATG-TCTACT-T-TT-A-AATG--T-G-A-T--G-T--CACTT-A-A-C------------A-GAGG-----C--T-TC--G--AA---A----T--TT-CAAT-A-------------CA-CCA---TC-TCCT-T-G-----C-A-----G--A-G--A-T--G-T
gi|87805 : ttgtgatgtcaccaacgagtcacatg----------------------A------------------------C--------------------------G--------------------------C-CCTGAAAT-T----TT-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-
gi|87811 : ttatgattggacaaaaacgaatcacatg----------------------A------------------------T--------------------------G--------------------------C-CCTGAAAT-T----TT-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--CA-c
gi|87807 : ----------------------A------------------------T--------------------------G--------------------------C-CCTGAAAT-T----TT-GAATATT-AGG-TCTCCT-T-TC-ATATTG--T-G-A-T--G-T--CA-
gi|87793 : aacgaatcacatg----------------------A------------------------C--------------------------G--------------------------C-CCAGAAAC-TCGGTTT-CAATATT--GG-TCTCCT-T-TTAA-ATTG--T-G-A-C--G-T--CA-c
gi|87808 : ttgtgaatggtcaccaatgagtcataacg----------------------A------------------------T--------------------------G--------------------------C-CCTGAAAT-T----TT-GAATATTTAGG-TCTCC--T-TC-ATATTG--T-G-A-T--G-T--CA-c
gi|87810 : aacgaatcacatg----------------------A------------------------T--------------------------G--------------------------C-CCTGAAAG-T----TT-TAATATT-ACA-TCTCTG-T-TC-A-ACTG--T-G-A-C--G-T--CA-c
gi|87798 : aacgaatcacatg----------------------A------------------------T--------------------------G--------------------------C-CCTGAAAT-T----TT-CAAGAGT-ACG-TCTACT-T-AC-A-c
gi|87778 : atgattggacaaaagcgaatcacatg----------------------A------------------------C--------------------------G--------------------------C-CCTGCAAT-T----TT-AAATATT-ACG-TCT
gi|87796 : ttcatcccgattcagacaaatctgtcgacatgcgaccggataaaaacgtatcacata--------------------------C-CCAGAAAT-T----TT-CAGTATT-ATG-TCTCCT-T-TT-A-ATTG--T-G-A-T--G-T--CACTT-A-A-C------------A-GAGG-----C--T-TT--G--AA---A----A--TT-CAAT-A-------------TA-CCA---TC-TCCT-T-G-----C-A-AGG-A--T-G--A-T--
gi|87806 : ttgtgatgtcaccaacgagttataacgaca--------------------------C-CCTGAAAT-T----TT-CAATATT-AGG-TATCCC-T-TC-A-ATTG--T-G-A-T--G-T--CA-
gi|87777 : ttatgattggacaaaaacgaatcacatgaca--------------------------C-CCTGAAATGT----TTATAATATT-ATG-TCTCCA-T-TC-A-GCTG--T-G-A-C--G-T--
gi|87786 : tttatcccactgcaaacaaatttgttgatacagttgtgtatgattggacataaataaatcacatgacacca-CCTGAAAT-TAA--TT-CAATATT-AGGATCTCTC-T-TC-A-ATTGATT-G-A-T--G-T--CA-CC-A-AAC-GAGT-CA-TTAC-GACG-----C--C-CC--A--AAA--T----T--TT-CAAT-A-------------TT-AGG---TC-TCCTGTAT-----C-A-ATT-G--T-GA-A-TG-G-TCAC--
gi|87804 : ccgcttcagacaaatttttgtgagtttatggatctggacaaaaacgaatcacatgacg-CCTAAAAT-T----TT-CAATATT-AGG-TCTCCT-T-TC-A-ATTG--T-G-A-T--G-T--
gi|87801 : ctgttgattatgattggacaaaaacgaatcacatgacgcaAAAT-T----T--AAATATT-ACG-TCTCTG-T-TC-A-ACTA--T-G-A-T--G-T--CA-
gi|87803 : acgaggcatacgacacccat----TT-CAATATT-AGG-TCTCCT-T-TC-A-ACTG--T-G-A-C--T-T--CA-c
gi|87784 : CT-G-TT-G-ATTA--T-G-A-TTGG-A--CA-AA-A-A-C-GAAT-CA-C-AT-GACG-----CACC-TA--A--AA---T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-T-AC--C-A-AAC-G-GT-CA-C-AT-GATG-----C-CCC-AAA-AT----T----TCCAAT-ATT-AGGTC-TCCT-T-TC-A-ATT-GTGG--AT-GTCACc
gi|87804 : tatccgcgcttcagacaatCT-G-TT-G-ATTA--T-G-A-TTGG-A--CA-AA-A-A-C-GAAT-CA-C-AT-GACG-----CACC-TA--A--AA---T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-T
gi|87787 : C-A-ATTG--T-G-A-C--A-T--CA-CT-T-A-C-AAAT-CG-C-AT-GATG-----C--C-CTGAA--AA---T----T--TT-
gi|87794 : ttcagacaaatgtgtgtagataactgattggataaaaaaacgaatcacatgattctctgattttcaatacatccatctcagttcaggatgtgtattttattgaTTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CG-T-AA-GATG-----C--C-TC--A--AAA--T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-CG-T-AA-GATG-----C-CTC-AAA-AT----T----TTCAAT-A-T-AGGTC-TCCT-T-TC-A-ATT-GT-G--AT-GTCAC
gi|87795 : TTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CG-T-AA-GATG-----C--C-TCA-A--AA---T----T--TT-CAAT-A--------------T-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-TA-T-AACGACA-----C-CCA-GAA-AT----T----TTCAGT-ATT-ATGTC-TCCT-T-TT-A-ATT-GT-G--AT-GTCAC
gi|87789 : TTG--T-G-A-T--G-T--CA-GA-A-A-C-GAGT-CA-T-AC-GACG-----C--C-CC--A--AAA--T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-CA-T-AC-GACG-----C-CCC-GAA-AT----T----TTCTAT-ATT-ACGTC-TCCT-T-TT-A-ATT-GT-G--AC-GTCA
gi|87791 : TTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CA-C-AT-GATG-----C--T-CC--A--AAA--T----T--TT-CAAT-A-------------TT-ATG---TC-TACT-T-T-----T-A-ATT-G--T-G--A-T--G-TCACT-T-A-A-C------------A-GAGG-----C-TTC-GAA-A-----T----TTCAAT-ACA-CCATC-TCCT-T-GC-A-----GA-G--AT-GT
gi|87788 : TTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CA-T-AC-GATG-----T--C-CCG-A--AA---T----T--TT-CAAT-A-------------TT-AAG---TC-TCCT-T-T-----T-A-ATT-G--T-G--A-C--G-TAACT-T-A-A-C------------A-GACG-----C-TTC-GGA-A-----T----TTCAAT-A
gi|87790 : TTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CA-T-AC-GACG-----C--C-CCG-A--AA---T----T--TT-CTAT-A-------------TT-ACG---TC-TCCT-T-T-----T-A-ATT-G--T-G--A-C--G-TCA
gi|87796 : TTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-TA-T-AACGACA-----C--C--C--AGAAA---T----T--TT-CAGT-A-------------TT-ATG---TC-TCCT-T-T-----T-A-ATT-G--T-G--A-T--G-TCACT-T-A-A-C------------A-GAGG-----C-TTTGAAA-A----------TTCAAT-ATA-CCATC-TCCT-T-GC-A-AGG-AT-G--AT-
gi|87792 : TTG--T-G-A-T--G-T--CA-CC-A-A-C-GAGT-CA-C-AT-GATG-----C--T-CCA-A--AA---T----T--TA-TAAT-A-------------TT-ATG---TC-TACT-T-T-----T-A-AAT-G--T-G--A-T--G-TCACT-T-A-A-C------------A-GAGG-----C-TTC-GAA-A-----T----TTCAAT-ACA-CCATC-TCCT-T-GC-A-----GA-G--AT-GT
gi|87793 : TTG--T-G-AAT--GGT--CA-CC-A-A-T-GAGT-CA-T-AACGACG-----C--C--C--A--GAAACTCGG-T--TT-CAAT-A-------------TT--GG---TC-TCCT-T-T-----TAA-ATT-G--T-G--A-C--G-TCAC--
gi|87783 : -A-A-C-GAAT-CA-C-AT-GACG-----C--CCTG--A--AA---T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-CA-T-AC-GATG-----T-CCC-GAA-AT----T----TTCAAT-ATT-AAGTC-TCCT-T-TT-A-ATT-GT-G--AC-GTAAC
gi|87771 : tatcccgcttcagacaaatttgttgatttatgattggacaaa-A-A-C-GAAT-CA-C-AT-GACA-----C--CCTG--A--AA---T----T--TT-CAAT-A-------------TT-AGG---TA-TCCC-T-T-----C-A-ATT-G--T-G--A-T--G-TCAG--A-A-A-C-GAGT-CA-T-AC-GACG-----C-CCC-AAA-AT----T----TTCAAT-ATT-AGGTC-TCCT-T-TC-A-ATT-GT-G--AT-GTCAC
gi|87772 : tttatcctgcttcagacaaatttgttgatttatgattggacaaa-A-A-C-GAAT-CA-C-AT-GATG-----C--CCTG--A--AA---T----T--TT-GAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-ATATT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-CA-C-AT-GATG-----C-TCC-AAA-AT----T----TTCAAT-ATT-ATGTC-TACT-T-TT-A-ATT-GT-G--AT-GTCAC
gi|87774 : tttatcctgcttcagacaaatttgttgatttatatttggacaaa-A-A-C-GAAT-C----AA-TACG-----C--CCTG--A--AA---T----T--TT-CAAT-A-------------TTCAGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--C-ATA-CGGAGT-CACT-AT-TAAG-----C-CCC-AAA-AT----T----TTCAAT-ATA-AGGTC-ACCT-T-TC---ATT-GT-G--ATGGTCAC
gi|87786 : tttatcccgcttcagacaaattttgttgatttaatgattgacaaa-A-A-C-GAAT-CA-C-AT-GACG-----C--C-TG--A--AA---T----TAATT-CAAT-A-------------TT-AGGA--TC-TCTC-T-T-----C-A-ATT-GATT-G--A-T--G-TCAC--C-A-AAC-GAGT-CA-TTAC-GACG-----C-CCC-AAA-AT----T----TTCAAT-ATT-AGGTC-TCCTGTATC-A-ATT-GT-GA-ATGGTCAC
gi|87773 : ccgcttcagacaaatttttgtgagtttatggatctggacaaa-A-A-C-GAAT-CA-C-AT-GATG-----C--CCTG--A--AA---T----T--TT-GAAT-A-------------TTTAGG---TC-TCC--T-T-----C-ATATT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-CA-C-AT-GATG-----C-TCC-AAA-AT----T----TATAAT-ATT-ATGTC-TACT-T-TT-A-AAT-GT-G--AT-GTCAC
gi|87800 : tttattcctgcttcagacaaattttgttgatttatattttggacaaaa-A-A-C-GAGT-CA-TTAC-GACG-----C--C-CC--A--AAA--T----T--TT-CAAT-A-------------TT-AGG---TC-TCCTGTAT-----C-A-ATT-G--T-GA-A-TG-G-TCAC--C-A-A-T-GAGT-CA-T-AACGACG-----C-CCA-GAA-ACTCGGT----TTCAAT-ATT--GGTC-TCCT-T-TTAA-ATT-GT-G--AC-GTCAC
gi|87799 : a-A-A-C-G-GT-CA-C-AT-GATG-----C--C-CC--A--AAA--T----T--TC-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--TGG--A-T--G-TCAC--CAA-A-T-GAGT-C--C-AA-TACGAACGTC-CGC-AAA-AT----T----TTCAATGAGT-ACGTCTTCCT-T-TT-A-ATTGGT-G--AC-GTCAC
gi|87780 : a-A-A-C-GAAT-CA-C-AT-GATG-----C--CCTG--A--AA---G----T--TT-TAAT-A-------------TT-ACA---TC-TCTG-T-T-----C-A-ACT-G--T-G--A-C--G-TCAC--T-T-A-C-GAGG-CA-T-AC-GACA-----C-C-C-ATA-AA----T----TTAAAT-ATT-ACGTC-TCTG-T-TC-A-ACT-AT-G--AT-GTCAC
gi|87805 : ttattctgcttcagacaaatttgttgatatatgattggacaaa-A-A-C-GAAT-CA-C-AT-GACG-----C--CCTG--A--AA---T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--
gi|87807 : ttatgattggacaaa-A-A-C-GAAT-CA-C-AT-GATG-----C--CCTG--A--AA---T----T--TT-GAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-ATATT-G--T-G--A-T--G-TCAC--
gi|87809 : -A-A-C-GAAT-C----AA-TACG-----C--CCTG--A--AA---T----T--TT-CAAT-A-------------TTCAGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCAC--
gi|87806 : -A-A-C-GAAT-CA-C-AT-GACA-----C--CCTG--A--AA---T----T--TT-CAAT-A-------------TT-AGG---TA-TCCC-T-T-----C-A-ATT-G--T-G--A-T--G-TCA
gi|87808 : ttatgattggacaaa-A-A-C-GAAT-CA-C-AT-GATG-----C--CCTG--A--AA---T----T--TT-GAAT-A-------------TTTAGG---TC-TCC--T-T-----C-ATATT-G--T-G--A-T--G-TCAC--
gi|87810 : -A-A-C-GAAT-CA-C-AT-GATG-----C--CCTG--A--AA---G----T--TT-TAAT-A-------------TT-ACA---TC-TCTG-T-T-----C-A-ACT-G--T-G--A-C--G-TCAC--
gi|87787 : -A-A-C-GAAT-CA-C-AT-GAT------T--C-TC--T--GA---T----T--TT-CAAT-ACATCCATCTCAGTTC-AGGATGTG-TATT-T-TATTGAC-A-ATT-G--T-G--A-C--A-TCAC--T-T-A-C-AAAT-CG-C-AT-GATGC----C-CTG-AAA-AT----T----TT
gi|87798 : ttcagacaaatgtgtgtagataactgattggataaaaa-A-G-C-GAAT-CA-C-AT-GATG-----C--CCTG--A--AA---T----T--TT-CAAG-A-------------GT-ACG---TC-TACT-T-A-----C-A-
gi|87801 : atgattggacaaa-A-C-GAGG-CA-T-AC-GACA-----C--C--C--AT-AA---A----T--TT-AAAT-A-------------TT-ACG---TC-TCTG-T-T-----C-A-ACT-A--T-G--A-T--G-TCAC--
gi|87811 : ATG-----C--CCTG--A--AA---T----T--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ATT-G--T-G--A-T--G-TCA
gi|87802 : G-----C--C-CC--A--AAA--T----T--TT-CAAT-A-------------TA-AGG---TC-ACCT-T-T-----C---ATT-G--T-G--A-TG-G-TCACATT-A-----GAGTCCA-T-GGCGACG-----T-CCC-GAA-AT----T----TTCAAT-ATA-ACGTC--CCT-T-T--A-ATTGGT-GAAAC-GTCAC
gi|87777 : gagtcactattaa-----C--C-TG--A--AA---TG---T--TTATAAT-A-------------TT-ATG---TC-TCCA-T-T-----C-A-GCT-G--T-G--A-C--G-T
gi|87803 : tttatcccactgcaaacaaatttgttgatacagttgtgtatgattggacataaataaatcacatgacaccac--TT-CAAT-A-------------TT-AGG---TC-TCCT-T-T-----C-A-ACT-G--T-G--A-C--T-TCAC--
gi|87776 : T-A-------------TT-AG----------T-T-TGA---C-A-ACT-G--T-G--A-T--G-TCAC--T-T-G-C-AAAT-CA-T-TC-GATG-----C-CCC-GAA-AT----T----TCC
gi|87804 : tttatcccacttcagacaaatttgctgatatatgattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgCT-G-T-----T-G-ATT-A--T-G--A-TTGG-ACAA--A-A-A-C-GAAT-CA-C-AT-GACG-----CACCT-AAA-AT----T----TTCAAT-ATT-AGGTC-TCCT-T-TC-A-ATT-GT-G--AT-GT
gi|87788 : TT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-CA-T-AC-GATG-----T-CCC-GAA-AT----T----TTCAAT-ATT-AAGTC-TCCT-T-TT-A-ATT-GT-G--AC-GTAAC
gi|87790 : TT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-CA-T-AC-GACG-----C-CCC-GAA-AT----T----TTCTAT-ATT-ACGTC-TCCT-T-TT-A-ATT-GT-G--AC-GTCAttaacagacgcttcggaatttcaata
gi|87796 : TT-G--T-G--A-T--G-TCAC--C-A-A-C-GAGT-TA-T-AACGACA-----C-CCA-GAA-AT----T----TTCAGT-ATT-ATGTC-TCCT-T-TT-A-ATT-GT-G--AT-GTCAC
gi|87805 : TT-A--T-G--A-TTGG-ACAA--A-A-A-C-GAAT-CA-C-AT-GACG-----C-CCT-GAA-AT----T----TTCAAT-ATT-AGGTC-TCCT-T-TC-A-ATT-GT-G--AT-GTCACttaacagaggctttgaaaattcaatataccatctccttgcaaggatgat
gi|87793 : TT-G--T-G--AAT--GGTCAC--C-A-A-T-GAGT-CA-T-AACGACG-----C-CCA-GAA-AC----TCGGTTTCAAT-ATT--GGTC-TCCT-T-TTAA-ATT-GT-G--AC-GTCAC
gi|87806 : TT-A--T-G--A-TTGG-ACAA--A-A-A-C-GAAT-CA-C-AT-GACA-----C-CCT-GAA-AT----T----TTCAAT-ATT-AGGTA-TCCC-T-TC-A-ATT-GT-G--AT-GTCA
gi|87807 : -A-A-C-GAAT-CA-C-AT-GATG-----C-CCT-GAA-AT----T----TTGAAT-ATT-AGGTC-TCCT-T-TC-ATATT-GT-G--AT-GTCAC
gi|87809 : -A-A-C-GAAT-C----AA-TACG-----C-CCT-GAA-AT----T----TTCAAT-ATTCAGGTC-TCCT-T-TC-A-ATT-GT-G--AT-GTCAC
gi|87808 : -A-A-C-GAAT-CA-C-AT-GATG-----C-CCT-GAA-AT----T----TTGAAT-ATTTAGGTC-TCC--T-TC-ATATT-GT-G--AT-GTCAC
gi|87810 : -A-A-C-GAAT-CA-C-AT-GATG-----C-CCT-GAA-AG----T----TTTAAT-ATT-ACATC-TCTG-T-TC-A-ACT-GT-G--AC-GTCAC
gi|87798 : -A-G-C-GAAT-CA-C-AT-GATG-----C-CCT-GAA-AT----T----TTCAAG-AGT-ACGTC-TACT-T-AC-A-
gi|87801 : atgattggacaaa-A-C-GAGG-CA-T-AC-GACA-----C-C-C-ATA-AA----T----TTAAAT-ATT-ACGTC-TCTG-T-TC-A-ACT-AT-G--AT-GTCAC
gi|87811 : ATG-----C-CCT-GAA-AT----T----TTCAAT-ATT-AGGTC-TCCT-T-TC-A-ATT-GT-G--AT-GTCA
gi|87777 : -----C-CTG-AAATGT----T----TATAAT-ATT-ATGTC-TCCA-T-TC-A-GCT-GT-G--AC-GT
gi|87803 : tttatcccactgcaaacaaatttgttgatacagttgtgtatgattggacataaataaatcacatgacaccac----TTCAAT-ATT-AGGTC-TCCT-T-TC-A-ACT-GT-G--AC-TTCAC
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|87782 ): TTATCCCGCTCCAGACAAATTGGTTAATATATTATCGTACAAAAGGGAATTAAATGAAACTCTGGAATTTTTATTAATACTTATCCGTTCAGAGGATATAATAGCTTGACAAATGTGACGACACTTGCGAGTTATACGACGTATTGGAATTTTTCAACA
Unaligned ( gi|87797 ): ATGATGGACAAAAACGAATCACATGTCATAGAATTTTTAATTAATTATTCTTCTTTAACTTGAATCAACTTATGATGCATATAAACCAGAATTTTCCGGAAAAGAATAACATCTTCATGCCACTATGATGTCAC
Unaligned ( gi|87785 ): ATCCCACTCCGACACAATTTAGTTGAGCTTAATATGTTGGACAAAACGATTGCACATGACTCCCTTAAAATATTA
Unaligned ( gi|87779 ): TTTATCCTGTTTCGAACAAAGAATGGATAAAAAACGAATCGCATGACGTCCCGAAACTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 11111111111111 33333333333333333333333333333333333333333 1 1111 1
lowQualScore : 3 6 3 11111111111111 3 22222222222222222222222222222222222222222 88888 7 5 8 99 1 1 5 44 0 44 4444 44 2 22 9999999999999 1 444 1 1 66666 1 11 1 2 1 55 44 222 11111 2 11 3 7777 1 222 1 1 44444 2222 2 1 1 1 1 1 1 1 2 1 3 1 22 22
lowQualScore : . . . .............. . ......................................... ..... . . . .. . . . .. . .. .... .. . .. ............. . ... . . ..... . .. . . . .. .. ... ..... . .. . .... . ... . . ..... .... . . . . . . . . . . . . .. ..
lowQualScore : 3 7 3 88888888888888 3 66666666666666666666666666666666666666666 33333 0 0 0 22 8 7 2 77 5 88 6666 11 2 44 2222222222222 7 666 7 7 00000 5 77 2 5 2 99 22 222 88888 4 77 6 9999 2 111 2 2 33333 5555 4 3 3 0 4 4 4 4 9 6 3 7 33 33
consensus : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTTCA-ATTGTGAT--GTCACCA-AC-GAGTCAC-A-CGACGC--C-CC-A--AA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----T----TT-CAAT-A-TTACGTC-TCCT-T-TC-A-A-TT-GT-G--A--CGTCAC
Reference ( family-425 ) : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCCGAAATTTTCAATATT-AGGTCTCCTTTCA-ATTGTGAT--GTCACCA-AC-GAGTCAC-A-CGACGC--C-TC-A--AA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----T----TT-CAAT-A-TTANGTC-TCCT-T-TC-A-A-TT-GT-G--A--CGTCAC
gi|87771 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATGATTGGACAAAAACGAATCACATGAC-----ACCCTGAAATTTTCAATATT-AGGTATCCCTTCA-ATTGTGAT--GTCAGAA-AC-GAGTCAT-A-CGACGC--C-CCAA--AA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T---CAC--
gi|87772 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATATTTGGACAAAAACGAATCACATGAT-----GCCCTGAAATTTTGAATATT-AGGTCTCCTTTCATATTGTGAT--GTCACCA-AC-GAGTCAC-A-TGATGC--T-CC-A--AAATT--TTCAATA-------------TT-ATG---TCTACT-T-T-----TA-ATTG--T-G-A-T--G--T---CAC--
gi|87773 : TTTATTCCTGCTTCAGACAAATTTTGT-T-------GATTTATA-TT--------------TTGGACAAAAAACGAATCACATG----AT-----GCCCTGAAATTTTGAATATTTAGGTCTCC-TTCATATTGTGAT--GTCACCA-AC-GAGTCAC-A-TGATGC--T-CCAA--AA-TT--TATAATA-------------TT-ATG---TCTACT-T-T-----TA-AATG--T-G-A-T--G--T---CAC--
gi|87773 : A-AC-GAATCAC-A-TGATGC--CCTG-A--AA-TT--TTGAATA-------------TTTAGG---TCTCC--T-T-----CATATTG--T-G-A-T--G--T---CAC--C-AA-CGAGTC--AC-A---TG-ATGCT---C-CA-AAAT----T----TA-TAAT-A-TTATGTC-TACT-T-TT-A-A-AT-GT-G--A--TGTCAC
gi|87774 : tttattcctgcttcagacaaattttgttgatttatattttggacaaaaTTTATCCC-GCTTCAGACAAATTTTGT-T-------G------A-TT--------------TAATGATTGACAAAAACGAATCAAT--AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTTCA-ATTGTGAT--GTCACCATACGGAGTCACTA-TTAAGC--C-CCAA--AA-TT--TTCAATA-------------TA-AGG---TCACCT-T-T-----C--ATTG--T-G-A-TG-G--T---CAC--
gi|87775 : TTTATCCC-GCTTCAGAC---TTT-GT-T-------G------A-TT--------------T--------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTTCA-ATTGTGAT--GTCATCA-AC-GAGTCGT-A-AGATGC--C-TC-A--AA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----T----TT-CAAT-A-TTAGGTC-TCCT-T-TC-A-A-TT-GT-G--A--TGTCAC
gi|87776 : TTTATCCC-ACTTCAGACAAATTT-GC-T-------G------A-TA--------------T--------------------------AT-----G
gi|87776 : TA-------------TT-AG---------T-T-TGA---CA-ACTG--T-G-A-T--G--T---CAC--T-TG-CAAATC--AT-T---CG-ATGCC---C-CG-AAAT----T----TC-Cattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgtattagtttgacaactgtgatgtcacttgcaaatcattcgatgccccgaaatttcc
gi|87777 : tttatcccacttcagacaaatttgctgatatatgattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgTTTATCCC-ACTGCAAACAAATTT-GT-T-------G------A-T
gi|87777 : -----CA-GTTG--T-GTA-T--GATTGGACAT--A-AA-TAAATC--AC-A---TG-ACACCACCC-TG-AAATG---T----TTATAAT-A-TTATGTC-TCCA-T-TC-A-G-CT-GT-G--A--CGTacagttgtgtatgattggacataaataaatcacatgacaccaccctgaaatgtttataatattatgtctccattcagctgtgacgt
gi|87778 : tttatcccactgcaaacaaatttgttgataTTCATCCC-GATTCAGACAAATCT-GT-C-------G------A-CA--------------T--------------------------GC-----GACCGGA
gi|87778 : -AA-CGTATC--AC-A---TA-ACGCC---C-TG-CAAT----T----TT-AAAT-A-TTACGTC-Ttaaaaacgtatcacataacgccctgcaattttaaatattacgtct
gi|87779 : ttcatcccgattcagacaaatctgtcgacatgcgaccggataaa-AA-CGAATC--GC-A---TG-ACGTC---C-CG-AAAC----T----T
gi|87780 : tttatcctgtttcgaacaaagaatggataaaaTTATTCT-GCTTCAGACAAATTT-GT-TGATATATG------A-TTGGACAAAAACGAATC--------------------------ACATGATGCCCTGAAAGTTTTAATATT-ACATCTCTGTTCA-ACTGTGAC--GTCACTT-AC-GAGGCAT-A-CGACAC--C--C-AT-AA-AT--TTAAATA-------------TT-ACG---TCTCTG-T-T-----CA-ACTA--T-G-A-T--G--T---CAC--
gi|87780 : A-AC-GAATCAC-A-TGATGC--CCTG-A--AA-GT--TTTAATA-------------TT-ACA---TCTCTG-T-T-----CA-ACTG--T-G-A-C--G--T---CAC--T-TA-CGAGGC--AT-A---CG-ACACC---C-AT-AAA-----T----TT-AAAT-A-TTACGTC-TCTG-T-TC-A-A-CT-AT-G--A--TGTCAC
gi|87781 : ttattctgcttcagacaaatttgttgatatatgattggacaaaTTATCCC-GCTTCAGACAAATTT-CT-T-------G------A-TT--------------T--------------------------AT-----G
gi|87782 : TTATCCC-GCTCCAGACAAATTG-GT-T-------A------A-TA--------------T--------------------------Aattggacaaaaacgaatcac
gi|87782 : -----CA-AATG--T-G-A-C--G--A---CAC--T-TG-CGAGTT--AT-A---CG-ACGTA---T-TG-GAAT----T----TTTCAAC-A-ttatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgacaaatgtgacgacacttgcgagttatacgacgtattggaatttttcaaca
gi|87783 : ttatcccgctccagacaaattggttaatatattatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgaTTATGATTGGACAAAA-AC-GAATCAC-A-TGACGC--CCTG-A--AA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T---CAC--C-AA-CGAGTC--AT-A---CG-ATGTC---C-CG-AAAT----T----TT-CAAT-A-TTAAGTC-TCCT-T-TT-A-A-TT-GT-G--A--CGTAAC
gi|87784 : tatcccgcttcagacaaatttgttgatCTGTTG-ATTATGATTGGACAAAA-AC-GAATCAC-A-TGACGCACC-TA-A--AA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T----AC--C-AAACG-GTC--AC-A---TG-ATGCC---C-CA-AAAT----T----TC-CAAT-A-TTAGGTC-TCCT-T-TC-A-A-TT-GTGG--A--TGTCAC
gi|87786 : tatccgcgcttcagacaatCC-GCTTCAGACAAATTT-TTGT-------G------AGTT--------------T--------------------------AT-----G
gi|87786 : A-AC-GAATCAC-A-TGACGC--C-TG-A--AA-TTAATTCAATA-------------TT-AGGA--TCTCTC-T-T-----CA-ATTGATT-G-A-T--G--T---CAC--C-AAACGAGTC--ATTA---CG-ACGCC---C-CA-AAAT----T----TT-CAAT-A-TTAGGTC-TCCTGTATC-A-A-TT-GT-G--AATGGTCACgatctggacaaaaacgaatcacatgacgcctgaaattaattcaatattaggatctctcttcaattgattgatgtcaccaaacgagtcattacgacgccccaaaattttcaatattaggtctcctgtatcaattgtgaatggtcac
gi|87787 : ccgcttcagacaaatttttgtgagtttatggatctggacaaaA-AC-GAATCAC-A-TGAT-T--C-TC-T--GA-TT--TTCAATACATCCATCTCAGTTC-AGGATGTGTATT-T-TATTGACA-ATTG--T-G-A-C--A--T---CAC--T-TA-CAAATC--GC-A---TG-ATGCC---C-TGAAAAT----T----TT-
gi|87788 : ttcagacaaatgtgtgtagataactgattggataaaaaTTG--T-G-A-T--G--T---CAC--C-AA-CGAGTC--AT-A---CG-ATGTC---C-CG-AAAT----T----TT-CAAT-A-TTAAGTC-TCCT-T-TT-A-A-TT-GT-G--A--CGTAAC
gi|87788 : TTGTGAT--GTCACCA-AC-GAGTCAT-A-CGATGT--C-CCGA--AA-TT--TTCAATA-------------TT-AAG---TCTCCT-T-T-----TA-ATTG--T-G-A-C--G--T---AAC--T--------TA--AC-A----G-ACGCT---T-CG-GAA-----T----TT-CAAT-A-ttaacagacgcttcggaatttcaata
gi|87789 : TTGTGAT--GTCAGAA-AC-GAGTCAT-A-CGACGC--C-CC-A--AAATT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----T----TT-CTAT-A-TTACGTC-TCCT-T-TT-A-A-TT-GT-G--A--CGTCA
gi|87790 : TTG--T-G-A-T--G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----T----TT-CTAT-A-TTACGTC-TCCT-T-TT-A-A-TT-GT-G--A--CGTCA
gi|87791 : TTGTGAT--GTCACCA-AC-GAGTCAC-A-TGATGC--T-CC-A--AAATT--TTCAATA-------------TT-ATG---TCTACT-T-T-----TA-ATTG--T-G-A-T--G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----T----TT-CAAT-A-CACCATC-TCCT-T-GC-A-
gi|87792 : TTGTGAT--GTCACCA-AC-GAGTCAC-A-TGATGC--T-CCAA--AA-TT--TATAATA-------------TT-ATG---TCTACT-T-T-----TA-AATG--T-G-A-T--G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----T----TT-CAAT-A-CACCATC-TCCT-T-GC-A-gagatgt
gi|87793 : TTG--T-G-AAT--GG-T---CAC--C-AA-TGAGTC--AT-AA--CG-ACGCC---C-AG-AAAC----TCGGTTT-CAAT-A-TT-GGTC-TCCT-T-TT-A-AATT-GT-G--A--CGTCACgagatgt
gi|87794 : TTGTGAT--GTCACCA-AC-GAGTCGT-A-AGATGC--C-TC-A--AAATT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----T----TT-CAAT-A--TAGGTC-TCCT-T-TC-A-A-TT-GT-G--A--TGTCAC
gi|87795 : TTGTGAT--GTCACCA-AC-GAGTCGT-A-AGATGC--C-TCAA--AA-TT--TTCAATA--------------T-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T---CAC--C-AA-CGAGTT--ATAA---CG-ACACC---C-AG-AAAT----T----TT-CAGT-A-TTATGTC-TCCT-T-TT-A-A-TT-GT-G--A--TGTCAC
gi|87796 : TTG--T-G-A-T--G--T---CAC--C-AA-CGAGTT--AT-AA--CG-ACACC---C-AG-AAAT----T----TT-CAGT-A-TTATGTC-TCCT-T-TT-A-A-TT-GT-G--A--TGTCAC
gi|87796 : TTGTGAT--GTCACCA-AC-GAGTTAT-AACGACAC--C--C-AGAAA-TT--TTCAGTA-------------TT-ATG---TCTCCT-T-T-----TA-ATTG--T-G-A-T--G--T---CAC--T--------TA--AC-A----G-AGGCT---T-TG-AAA-----A----TT-CAAT-A-TACCATC-TCCT-T-GC-A-A-ttaacagaggctttgaaaattcaatataccatctccttgcaaggatgat
gi|87798 : -AG-CGAATC--AC-A---TG-ATGCC---C-TG-AAAT----T----TT-CAAG-A-GTACGTC-TACT-T-AC-A-ggatgat
gi|87799 : atgattggacaaaA-AC-G-GTCAC-A-TGATGC--C-CC-A--AAATT--TCCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--TGG-A-T--G--T---CAC--CAAA-TGAGTCCAAT-A---CGAACGTC---CGCA-AAAT----T----TT-CAATGA-GTACGTCTTCCT-T-TT-A-A-TTGGT-G--A--CGTCAC
gi|87800 : aA-AC-GAGTCATTA-CGACGC--C-CC-A--AAATT--TTCAATA-------------TT-AGG---TCTCCTGTAT-----CA-ATTG--T-GAA-TG-G--T---CAC--C-AA-TGAGTC--ATAA---CG-ACGCC---C-AG-AAACTCGGT----TT-CAAT-A-TT-GGTC-TCCT-T-TTAA-A-TT-GT-G--A--CGTCAC
gi|87801 : aA-CGAGGC--AT-A---CG-ACACC---C-AT-AAAT----T----T--AAAT-A-TTACGTC-TCTG-T-TC-A-A-CT-AT-G--A--TGTCAC
gi|87802 : -GAGTCACTA-TTAAGC--C-CC-A--AAATT--TTCAATA-------------TA-AGG---TCACCT-T-T-----CA--TTG--T-G-A-T--GG-T---CACATT-A---GAGTC---C-ATGGCG-ACGTC---C-CG-AAAT----T----TT-CAAT-A-TAACGTC--CCT-T-T--A-A-TTGGT-GAAA--CGTCAC
gi|87803 : ----TT-CAAT-A-TTAGGTC-TCCT-T-TC-A-A-CT-GT-G--A--CTTCAC
gi|87804 : CTGTTG-ATTATGATTGGACAAAA-AC-GAATCAC-A-TGACGCACC-TA-A--AA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T--G--T---
gi|87805 : TTA--T-G-A-TTGG--A---CAA--A-AA-CGAATC--AC-A---TG-ACGCC---C-TG-AAAT----T----TT-CAAT-A-TTAGGTC-TCCT-T-TC-A-A-TT-GT-G--A--TGTCAC
gi|87806 : TTA--T-G-A-TTGG--A---CAA--A-AA-CGAATC--AC-A---TG-ACACC---C-TG-AAAT----T----TT-CAAT-A-TTAGGTA-TCCC-T-TC-A-A-TT-GT-G--A--TGTCA
gi|87807 : -AA-CGAATC--AC-A---TG-ATGCC---C-TG-AAAT----T----TT-GAAT-A-TTAGGTC-TCCT-T-TC-ATA-TT-GT-G--A--TGTCAC
gi|87808 : -AA-CGAATC--AC-A---TG-ATGCC---C-TG-AAAT----T----TT-GAAT-ATTTAGGTC-TCC--T-TC-ATA-TT-GT-G--A--TGTCAC
gi|87809 : --------------T--------------------------AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTTCA-ATTGTGAT--GTCAC
gi|87810 : aacgaatcaa-AA-CGAATC--AC-A---TG-ATGCC---C-TG-AAAG----T----TT-TAAT-A-TTACATC-TCTG-T-TC-A-A-CT-GT-G--A--CGTCAC
gi|87811 : --------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTTCA-ATTGTGAT--GTCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|87797 ): ATGATGGACAAAAACGAATCACATGTCATAGAATTTTTAATTAATTATTCTTCTTTAACTTGAATCAACTTATGATGCATATAAACCAGAATTTTCCGGAAAAGAATAACATCTTCATGCCACTATGATGTCAC
Unaligned ( gi|87785 ): ATCCCACTCCGACACAATTTAGTTGAGCTTAATATGTTGGACAAAACGATTGCACATGACTCCCTTAAAATATTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 11111111111111 55555555555555555555555555555555555555555 1 11 22
lowQualScore : 3 6 3 00000000000000 3 22222222222222222222222222222222222222222 77777 2 6 00 1 1 4 44 0 1 55 9 22 8888888888888 3 444 1 1 55555 4 11 1 2 1 2 44 222 11 5555 22 4 9999 1 222 1 1 66666 3333 3 1 2 2 2 2 2 2 5 2 33 33
lowQualScore : . . . .............. . ......................................... ..... . . .. . . . .. . . .. . .. ............. . ... . . ..... . .. . . . . .. ... .. .... .. . .... . ... . . ..... .... . . . . . . . . . . .. ..
lowQualScore : 1 2 1 11111111111111 1 00000000000000000000000000000000000000000 77777 0 7 55 6 5 6 33 5 5 88 2 11 1111111111111 0 111 5 5 33333 1 88 3 6 3 6 44 333 99 9999 22 8 5555 6 888 6 6 66666 4444 3 8 4 0 1 1 1 5 3 7 77 77
consensus : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTTCA-ATTGTGAT--GTCACCA-AC-GAGTCAC-A-CGACGCCC-CG-AAA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----T----TT-CAAT-ATTACGTC-TCCT-T-TC-AA-TT-GT-G--A--CGTCAC
Reference ( family-425 ) : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTTCA-ATTGTGAT--GTCACCA-AC-GAGTCAC-A-CGACGCCC-C--AAA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----T----TT-CAAT-ATTACGTC-TCCT-T-TC-AA-TT-GT-G--A--CGTCAC
gi|87771 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATGATTGGACAAAAACGAATCACATGAC-----ACCCTGAAATTTTCAATATT-AGGTATCCCTTCA-ATTGTGAT--GTCAGAA-AC-GAGTCAT-A-CGACGCCC-CA-AAA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T---CAC--
gi|87772 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATATTTGGACAAAAACGAATCACATGAT-----GCCCTGAAATTTTGAATATT-AGGTCTCCTTTCATATTGTGAT--GTCACCA-AC-GAGTCAC-A-TGATGCTC-CA-AAA-TT--TTCAATA-------------TT-ATG---TCTACT-T-T-----TA-ATTG--T-G-A-T-G--T---CAC--
gi|87773 : TTTATTCCTGCTTCAGACAAATTTTGT-T-------GATTTATA-TT--------------TTGGACAAAAAACGAATCACATG----AT-----GCCCTGAAATTTTGAATATTTAGGTCTCC-TTCATATTGTGAT--GTCACCA-AC-GAGTCAC-A-TGATGCTC-CA-AAA-TT--TATAATA-------------TT-ATG---TCTACT-T-T-----TA-AATG--T-G-A-T-G--T---CAC--
gi|87773 : A-AC-GAATCAC-A-TGATGCCC-TG-AAA-TT--TTGAATA-------------TTTAGG---TCTCC--T-T-----CATATTG--T-G-A-T-G--T---CAC--C-AA-CGAGTC--AC-A---TG-ATGCT---C-CA-AAAT----T----TA-TAAT-ATTATGTC-TACT-T-TT-AA-AT-GT-G--A--TGTCAC
gi|87774 : tttattcctgcttcagacaaattttgttgatttatattttggacaaaaTTTATCCC-GCTTCAGACAAATTTTGT-T-------G------A-TT--------------TAATGATTGACAAAAACGAATCAAT--AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTTCA-ATTGTGAT--GTCACCATACGGAGTCACTA-TTAAGCCC-CA-AAA-TT--TTCAATA-------------TA-AGG---TCACCT-T-T-----C--ATTG--T-G-A-TGG--T---CAC--
gi|87775 : TTTATCCC-GCTTCAGAC---TTT-GT-T-------G------A-TT--------------T--------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTTCA-ATTGTGAT--GTCATCA-AC-GAGTCGT-A-AGATGCCT-C--AAA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----T----TT-CAAT-ATTAGGTC-TCCT-T-TC-AA-TT-GT-G--A--TGTCAC
gi|87776 : TTTATCCC-ACTTCAGACAAATTT-GC-T-------G------A-TA--------------T--------------------------AT-----G
gi|87776 : TA-------------TT-AG---------T-T-TGA---CA-ACTG--T-G-A-T-G--T---CAC--T-TG-CAAATC--AT-T---CG-ATGCC---C-CG-AAAT----T----TC-Cattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgtattagtttgacaactgtgatgtcacttgcaaatcattcgatgccccgaaatttcc
gi|87777 : tttatcccacttcagacaaatttgctgatatatgattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgTTTATCCC-ACTGCAAACAAATTT-GT-T-------G------A-T
gi|87777 : -----CA-GTTG--T-GTA-T-GATTGGACAT--A-AA-TAAATC--AC-A---TG-ACACCACCC-TG-AAATG---T----TTATAAT-ATTATGTC-TCCA-T-TC-AG-CT-GT-G--A--CGTacagttgtgtatgattggacataaataaatcacatgacaccaccctgaaatgtttataatattatgtctccattcagctgtgacgt
gi|87778 : tttatcccactgcaaacaaatttgttgataTTCATCCC-GATTCAGACAAATCT-GT-C-------G------A-CA--------------T--------------------------GC-----GACCGGA
gi|87778 : -AA-CGTATC--AC-A---TA-ACGCC---C-TG-CAAT----T----TT-AAAT-ATTACGTC-Ttaaaaacgtatcacataacgccctgcaattttaaatattacgtct
gi|87779 : ttcatcccgattcagacaaatctgtcgacatgcgaccggataaa-AA-CGAATC--GC-A---TG-ACGTC---C-CG-AAAC----T----T
gi|87780 : tttatcctgtttcgaacaaagaatggataaaaTTATTCT-GCTTCAGACAAATTT-GT-TGATATATG------A-TTGGACAAAAACGAATC--------------------------ACATGATGCCCTGAAAGTTTTAATATT-ACATCTCTGTTCA-ACTGTGAC--GTCACTT-AC-GAGGCAT-A-CGACACCCAT--AAA--T--TTAAATA-------------TT-ACG---TCTCTG-T-T-----CA-ACTA--T-G-A-T-G--T---CAC--
gi|87781 : TTATCCC-GCTTCAGACAAATTT-CT-T-------G------A-TT--------------T--------------------------AT-----G
gi|87782 : TTATCCC-GCTCCAGACAAATTG-GT-T-------A------A-TA--------------T--------------------------Aattggacaaaaacgaatcac
gi|87782 : -----CA-AATG--T-G-A-C-G--A---CAC--T-TG-CGAGTT--AT-A---CG-ACGTA---T-TG-GAAT----T----TTTCAAC-Attatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgacaaatgtgacgacacttgcgagttatacgacgtattggaatttttcaaca
gi|87783 : ttatcccgctccagacaaattggttaatatattatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgaTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATGATTGGACAAAAACGAATCACATGAC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTTCA-ATTGTGAT--GTCACCA-AC-GAGTCAT-A-CGATGTCC-CG-AAA-TT--TTCAATA-------------TT-AAG---TCTCCT-T-T-----TA-ATTG--T-G-A-C-G--T---AAC--
gi|87784 : CTGTTG-ATTATGATTGGACAAAA-AC-GAATCAC-A-TGACGCAC-CTAAAA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T----AC--C-AAACG-GTC--AC-A---TG-ATGCC---C-CA-AAAT----T----TC-CAAT-ATTAGGTC-TCCT-T-TC-AA-TT-GTGG--A--TGTCAC
gi|87786 : tatccgcgcttcagacaatCC-GCTTCAGACAAATTT-TTGT-------G------AGTT--------------T--------------------------AT-----G
gi|87786 : A-AC-GAATCAC-A-TGACGCCT-G--AAA-TTAATTCAATA-------------TT-AGGA--TCTCTC-T-T-----CA-ATTGATT-G-A-T-G--T---CAC--C-AAACGAGTC--ATTA---CG-ACGCC---C-CA-AAAT----T----TT-CAAT-ATTAGGTC-TCCTGTATC-AA-TT-GT-G--AATGGTCACgatctggacaaaaacgaatcacatgacgcctgaaattaattcaatattaggatctctcttcaattgattgatgtcaccaaacgagtcattacgacgccccaaaattttcaatattaggtctcctgtatcaattgtgaatggtcac
gi|87787 : ccgcttcagacaaatttttgtgagtttatggatctggacaaaA-AC-GAATCAC-A-TGATTCTC-T--GA--TT--TTCAATACATCCATCTCAGTTC-AGGATGTGTATT-T-TATTGACA-ATTG--T-G-A-C-A--T---CAC--T-TA-CAAATC--GC-A---TG-ATGCC---C-TGAAAAT----T----TT-
gi|87788 : ttcagacaaatgtgtgtagataactgattggataaaaaTTGTGAT--GTCACCA-AC-GAGTCAT-A-CGATGTCC-CG-AAA-TT--TTCAATA-------------TT-AAG---TCTCCT-T-T-----TA-ATTG--T-G-A-C-G--T---AAC--T--------TA--AC-A----G-ACGCT---T-CG-GAA-----T----TT-CAAT-A
gi|87789 : TTGTGAT--GTCAGAA-AC-GAGTCAT-A-CGACGCCC-C--AAAATT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----T----TT-CTAT-ATTACGTC-TCCT-T-TT-AA-TT-GT-G--A--CGTCA
gi|87790 : TTG--T-G-A-T-G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----T----TT-CTAT-ATTACGTC-TCCT-T-TT-AA-TT-GT-G--A--CGTCA
gi|87791 : TTGTGAT--GTCACCA-AC-GAGTCAC-A-TGATGCTC-C--AAAATT--TTCAATA-------------TT-ATG---TCTACT-T-T-----TA-ATTG--T-G-A-T-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----T----TT-CAAT-ACACCATC-TCCT-T-GC-A
gi|87792 : TTGTGAT--GTCACCA-AC-GAGTCAC-A-TGATGCTC-CA-AAA-TT--TATAATA-------------TT-ATG---TCTACT-T-T-----TA-AATG--T-G-A-T-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----T----TT-CAAT-ACACCATC-TCCT-T-GC-Agagatgt
gi|87793 : TTG--T-G-AAT-GG-T---CAC--C-AA-TGAGTC--AT-AA--CG-ACGCC---C-AG-AAAC----TCGGTTT-CAAT-ATTG-GTC-TCCT-T-TT-AAATT-GT-G--A--CGTCACgagatgt
gi|87794 : TTGTGAT--GTCACCA-AC-GAGTCGT-A-AGATGCCT-C--AAAATT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----T----TT-CAAT-A-TAGGTC-TCCT-T-TC-AA-TT-GT-G--A--TGTCAC
gi|87795 : TTGTGAT--GTCACCA-AC-GAGTCGT-A-AGATGCCT-CA-AAA-TT--TTCAATA--------------T-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T---CAC--C-AA-CGAGTT--ATAA---CG-ACACC---C-AG-AAAT----T----TT-CAGT-ATTATGTC-TCCT-T-TT-AA-TT-GT-G--A--TGTCAC
gi|87796 : TTGTGAT--GTCACCA-AC-GAGTTAT-AACGACACCC-AG-AAA-TT--TTCAGTA-------------TT-ATG---TCTCCT-T-T-----TA-ATTG--T-G-A-T-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-TG-AAA-----A----TT-CAAT-ATACCATC-TCCT-T-GC-AA-
gi|87798 : -AG-CGAATC--AC-A---TG-ATGCC---C-TG-AAAT----T----TT-CAAG-AGTACGTC-TACT-T-AC-Aggatgat
gi|87799 : atgattggacaaaA-AC-G-GTCAC-A-TGATGCCC-C--AAAATT--TCCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--TGG-A-T-G--T---CAC--CAAA-TGAGTCCAAT-A---CGAACGTC---CGCA-AAAT----T----TT-CAATGAGTACGTCTTCCT-T-TT-AA-TTGGT-G--A--CGTCAC
gi|87800 : aA-AC-GAGTCATTA-CGACGCCC-C--AAAATT--TTCAATA-------------TT-AGG---TCTCCTGTAT-----CA-ATTG--T-GAA-TGG--T---CAC--C-AA-TGAGTC--ATAA---CG-ACGCC---C-AG-AAACTCGGT----TT-CAAT-ATTG-GTC-TCCT-T-TTAAA-TT-GT-G--A--CGTCAC
gi|87801 : aA-CGAGGC--AT-A---CG-ACACC---C-AT-AAAT----T----T--AAAT-ATTACGTC-TCTG-T-TC-AA-CT-AT-G--A--TGTCAC
gi|87802 : -GAGTCACTA-TTAAGCCC-C--AAAATT--TTCAATA-------------TA-AGG---TCACCT-T-T-----CA--TTG--T-G-A-T-GG-T---CACATT-A---GAGTC---C-ATGGCG-ACGTC---C-CG-AAAT----T----TT-CAAT-ATAACGTC--CCT-T-T--AA-TTGGT-GAAA--CGTCAC
gi|87803 : TTCAATATT-AGGTCTCCTTTCA-ACTGTGAC--TTCAC
gi|87804 : CTGTTG-ATTATGATTGGACAAAA-AC-GAATCAC-A-TGACGCAC-CTAAAA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T---
gi|87805 : TTATGATTGGACAAAA-AC-GAATCAC-A-TGACGCCC-TG-AAA-TT--TTCAATA-------------TT-AGG---TCTCCT-T-T-----CA-ATTG--T-G-A-T-G--T---CAC--
gi|87806 : TTATGATTGGACAAAA-AC-GAATCAC-A-TGACACCC-TG-AAA-TT--TTCAATA-------------TT-AGG---TATCCC-T-T-----CA-ATTG--T-G-A-T-G--T---CA
gi|87807 : A-AC-GAATCAC-A-TGATGCCC-TG-AAA-TT--TTGAATA-------------TT-AGG---TCTCCT-T-T-----CATATTG--T-G-A-T-G--T---CAC--
gi|87808 : A-AC-GAATCAC-A-TGATGCCC-TG-AAA-TT--TTGAATA-------------TTTAGG---TCTCC--T-T-----CATATTG--T-G-A-T-G--T---CAC--
gi|87809 : --------------T--------------------------AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTTCA-ATTGTGAT--GTCAC
gi|87810 : aacgaatcaa-AA-CGAATC--AC-A---TG-ATGCC---C-TG-AAAG----T----TT-TAAT-ATTACATC-TCTG-T-TC-AA-CT-GT-G--A--CGTCAC
gi|87811 : --------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTTCA-ATTGTGAT--GTCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|87797 ): ATGATGGACAAAAACGAATCACATGTCATAGAATTTTTAATTAATTATTCTTCTTTAACTTGAATCAACTTATGATGCATATAAACCAGAATTTTCCGGAAAAGAATAACATCTTCATGCCACTATGATGTCAC
Unaligned ( gi|87785 ): ATCCCACTCCGACACAATTTAGTTGAGCTTAATATGTTGGACAAAACGATTGCACATGACTCCCTTAAAATATTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 11111111111111 55555555555555555555555555555555555555555 1
lowQualScore : 3 6 3 00000000000000 3 22222222222222222222222222222222222222222 77777 0 33 5 1 99 1 1 1 3 44 2 4444 1 9999999999999 1 333 1 1 33333 1 4 11 1 2 2 33 222 22 6666 22 5 9999 1 333 1 1 99999 1 1 2 2 2 2 5 2 33 33
lowQualScore : . . . .............. . ......................................... ..... . .. . . .. . . . . .. . .... . ............. . ... . . ..... . . .. . . . .. ... .. .... .. . .... . ... . . ..... . . . . . . . . .. ..
lowQualScore : 1 2 1 11111111111111 1 00000000000000000000000000000000000000000 77777 9 99 7 7 22 7 3 3 9 33 6 5555 3 0000000000000 4 999 4 4 44444 4 1 88 3 7 7 22 333 00 6666 55 5 6666 8 222 8 8 66666 8 9 0 1 1 1 3 7 77 77
consensus : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-CGACGC-CCCGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----TTT-CAAT-ATTACGTC-TCCT-T-TC-AATT-GT-G--A--CGTCAC
Reference ( family-425 ) : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-CGACGC-CCCGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----TTT-CAAT-ATTACGTC-TCCT-T-TC-AATT-GT-G--A--CGTCAC
gi|87771 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATGATTGGACAAAAACGAATCACATGAC-----ACCCTGAAATTTTCAATATT-AGGTATCCCTT--CA-ATTGTGA-T--G-TCAGAA-AC-GAGTCAT-A-CGACGC-CCCAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--
gi|87772 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATATTTGGACAAAAACGAATCACATGAT-----GCCCTGAAATTTTGAATATT-AGGTCTCCTTT--CATATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TT-CAATA-------------TT-ATG---TCTACT-T-T-----T-A-ATTG--T-G-AT-G--T---CAC--
gi|87773 : TTTATTCCTGCTTCAGACAAATTTTGT-T-------GATTTATA-TT--------------TTGGACAAAAAACGAATCACATG----AT-----GCCCTGAAATTTTGAATATTTAGGTCTCC-TT--CATATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TA-TAATA-------------TT-ATG---TCTACT-T-T-----T-A-AATG--T-G-AT-G--T---CAC--
gi|87773 : A-AC-GAATCAC-A-TGATGC-CCTGAAATT----TT-GAATA-------------TTTAGG---TCTCC--T-T-----C-ATATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---TG-ATGCT---C-CA-AAAT----TTA-TAAT-ATTATGTC-TACT-T-TT-AAAT-GT-G--A--TGTCAC
gi|87774 : tttattcctgcttcagacaaattttgttgatttatattttggacaaaaTTTATCCC-GCTTCAGACAAATTTTGT-T-------G------A-TT--------------TAATGATTGACAAAAACGAATCAAT--AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCATACGGAGTCACTA-TTAAGC-CCCAAAATT----TT-CAATA-------------TA-AGG---TCACCT-T-T-----C---ATTG--T-G-ATGG--T---CAC--
gi|87775 : TTTATCCC-GCTTCAGAC---TTT-GT-T-------G------A-TT--------------T--------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCATCA-AC-GAGTCGT-A-AGATGC-CTC-AAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----TTT-CAAT-ATTAGGTC-TCCT-T-TC-AATT-GT-G--A--TGTCAC
gi|87776 : TTTATCCC-ACTTCAGACAAATTT-GC-T-------G------A-TA--------------T--------------------------AT-----G
gi|87776 : TATT-AG------TTTGACA-ACTGTGA-T--G-TCACTT-GC-AAATCAT-T-CGATGC-CCCGAAATT----TC-Cattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgtattagtttgacaactgtgatgtcacttgcaaatcattcgatgccccgaaatttcc
gi|87777 : tttatcccacttcagacaaatttgctgatatatgattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgTTTATCCC-ACTGCAAACAAATTT-GT-T-------G------A-T
gi|87777 : -----C-A-GTTG--T-GTAT-GATTGGACAT--A-AA-TAAATC--AC-A---TG-ACACCACCC-TG-AAATG---TTTATAAT-ATTATGTC-TCCA-T-TC-AGCT-GT-G--A--CGTacagttgtgtatgattggacataaataaatcacatgacaccaccctgaaatgtttataatattatgtctccattcagctgtgacgt
gi|87778 : tttatcccactgcaaacaaatttgttgataTTCATCCC-GATTCAGACAAATCT-GT-C-------G------A-CA--------------T--------------------------GC-----GACCGGA
gi|87778 : -AA-CGTATC--AC-A---TA-ACGCC---C-TG-CAAT----TTT-AAAT-ATTACGTC-Ttaaaaacgtatcacataacgccctgcaattttaaatattacgtct
gi|87779 : ttcatcccgattcagacaaatctgtcgacatgcgaccggataaaA-AC-GAATCGC-A-TGACGT-CCCGAAACT----T
gi|87780 : tttatcctgtttcgaacaaagaatggataaaaTTATTCT-GCTTCAGACAAATTT-GT-TGATATATG------A-TTGGACAAAAACGAATC--------------------------ACATGATGCCCTGAAAGTTTTAATATT-ACATCTCTGTT--CA-ACTGTGA-C--G-TCACTT-AC-GAGGCAT-A-CGACAC-CCATAAA-T----TT-AAATA-------------TT-ACG---TCTCTG-T-T-----C-A-ACTA--T-G-AT-G--T---CAC--
gi|87780 : A-AC-GAATCAC-A-TGATGC-CCTGAAAGT----TT-TAATA-------------TT-ACA---TCTCTG-T-T-----C-A-ACTG--T-G-AC-G--T---CAC--T-TA-CGAGGC--AT-A---CG-ACACC---C-AT-AAA-----TTT-AAAT-ATTACGTC-TCTG-T-TC-AACT-AT-G--A--TGTCAC
gi|87781 : ttattctgcttcagacaaatttgttgatatatgattggacaaaTTATCCC-GCTTCAGACAAATTT-CT-T-------G------A-TT--------------T--------------------------AT-----G
gi|87782 : TTATCCC-GCTCCAGACAAATTG-GT-T-------A------A-TA--------------T--------------------------Aattggacaaaaacgaatcac
gi|87782 : --CA-AATGTGA-C--G-ACACTT-GC-GAGTTAT-A-CGACGT-ATTGGAATT----TTTCAACA-------------ttatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgacaaatgtgacgacacttgcgagttatacgacgtattggaatttttcaaca
gi|87783 : ttatcccgctccagacaaattggttaatatattatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgaTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATGATTGGACAAAAACGAATCACATGAC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAT-A-CGATGT-CCCGAAATT----TT-CAATA-------------TT-AAG---TCTCCT-T-T-----T-A-ATTG--T-G-AC-G--T---AAC--
gi|87784 : CTGT--TG-ATTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACGCACCTAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T----AC--C-AAACG-GTC--AC-A---TG-ATGCC---C-CA-AAAT----TTC-CAAT-ATTAGGTC-TCCT-T-TC-AATT-GTGG--A--TGTCAC
gi|87786 : tatccgcgcttcagacaatCC-GCTTCAGACAAATTT-TTGT-------G------AGTT--------------T--------------------------AT-----G
gi|87786 : A-AC-GAATCAC-A-TGACGC-CT-GAAATTAA--TT-CAATA-------------TT-AGGA--TCTCTC-T-T-----C-A-ATTGATT-G-AT-G--T---CAC--C-AAACGAGTC--ATTA---CG-ACGCC---C-CA-AAAT----TTT-CAAT-ATTAGGTC-TCCTGTATC-AATT-GT-G--AATGGTCACgatctggacaaaaacgaatcacatgacgcctgaaattaattcaatattaggatctctcttcaattgattgatgtcaccaaacgagtcattacgacgccccaaaattttcaatattaggtctcctgtatcaattgtgaatggtcac
gi|87787 : ccgcttcagacaaatttttgtgagtttatggatctggacaaaA-AC-GAATCAC-A-TGATTC-TCTGA--TT----TT-CAATACATCCATCTCAGTTC-AGGATGTGTATT-T-TATTGAC-A-ATTG--T-G-AC-A--T---CAC--T-TA-CAAATC--GC-A---TG-ATGCC---C-TGAAAAT----TTT-
gi|87788 : ttcagacaaatgtgtgtagataactgattggataaaaaTTGTGA-T--G-TCACCA-AC-GAGTCAT-A-CGATGT-CCCGAAATT----TT-CAATA-------------TT-AAG---TCTCCT-T-T-----T-A-ATTG--T-G-AC-G--T---AAC--T--------TA--AC-A----G-ACGCT---T-CG-GAA-----TTT-CAAT-A
gi|87789 : TTGTGA-T--G-TCAGAA-AC-GAGTCAT-A-CGACGC-CCCAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----TTT-CTAT-ATTACGTC-TCCT-T-TT-AATT-GT-G--A--CGTCA
gi|87790 : TTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----TTT-CTAT-ATTACGTC-TCCT-T-TT-AATT-GT-G--A--CGTCA
gi|87791 : TTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TT-CAATA-------------TT-ATG---TCTACT-T-T-----T-A-ATTG--T-G-AT-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----TTT-CAAT-ACACCATC-TCCT-T-GC-A
gi|87792 : TTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TA-TAATA-------------TT-ATG---TCTACT-T-T-----T-A-AATG--T-G-AT-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----TTT-CAAT-ACACCATC-TCCT-T-GC-Agagatgt
gi|87793 : TTGTGAAT--GGTCACCA-AT-GAGTCAT-AACGACGC-CCAGAAACTCGGTTT-CAATA-------------TT--GG---TCTCCT-T-T-----TAA-ATTG--T-G-AC-G--T---CAC--gagatgt
gi|87794 : TTGTGA-T--G-TCACCA-AC-GAGTCGT-A-AGATGC-CTCAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----TTT-CAAT-A-TAGGTC-TCCT-T-TC-AATT-GT-G--A--TGTCAC
gi|87795 : TTGTGA-T--G-TCACCA-AC-GAGTCGT-A-AGATGC-CTCAAAATT----TT-CAATA--------------T-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTT--ATAA---CG-ACACC---C-AG-AAAT----TTT-CAGT-ATTATGTC-TCCT-T-TT-AATT-GT-G--A--TGTCAC
gi|87796 : TTGTGA-T--G-TCACCA-AC-GAGTTAT-AACGACAC-CCAGAAATT----TT-CAGTA-------------TT-ATG---TCTCCT-T-T-----T-A-ATTG--T-G-AT-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-TG-AAA-----ATT-CAAT-ATACCATC-TCCT-T-GC-AA
gi|87798 : -AG-CGAATC--AC-A---TG-ATGCC---C-TG-AAAT----TTT-CAAG-AGTACGTC-TACT-T-AC-Aggatgat
gi|87799 : atgattggacaaaA-AC-G-GTCAC-A-TGATGC-CCCAAAATT----TC-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--TGG-AT-G--T---CAC--CAAA-TGAGTCCAAT-A---CGAACGTC---CGCA-AAAT----TTT-CAATGAGTACGTCTTCCT-T-TT-AATTGGT-G--A--CGTCAC
gi|87800 : aA-AC-GAGTCATTA-CGACGC-CCCAAAATT----TT-CAATA-------------TT-AGG---TCTCCTGTAT-----C-A-ATTG--T-GAATGG--T---CAC--C-AA-TGAGTC--ATAA---CG-ACGCC---C-AG-AAACTCGGTTT-CAAT-ATTG-GTC-TCCT-T-TTAAATT-GT-G--A--CGTCAC
gi|87801 : aA-CGAGGC--AT-A---CG-ACACC---C-AT-AAAT----TT--AAAT-ATTACGTC-TCTG-T-TC-AACT-AT-G--A--TGTCAC
gi|87802 : -GAGTCACTA-TTAAGC-CCCAAAATT----TT-CAATA-------------TA-AGG---TCACCT-T-T-----C-A--TTG--T-G-AT-GG-T---CACATT-A---GAGTC---C-ATGGCG-ACGTC---C-CG-AAAT----TTT-CAAT-ATAACGTC--CCT-T-T--AATTGGT-GAAA--CGTCAC
gi|87803 : TTCAATATT-AGGTCTCCTTT--CA-ACTGTGA-C--T-TCAC
gi|87804 : CTGT--TG-ATTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACGCACCTAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---
gi|87805 : TTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACGC-CCTGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--
gi|87806 : TTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACAC-CCTGAAATT----TT-CAATA-------------TT-AGG---TATCCC-T-T-----C-A-ATTG--T-G-AT-G--T---CA
gi|87807 : A-AC-GAATCAC-A-TGATGC-CCTGAAATT----TT-GAATA-------------TT-AGG---TCTCCT-T-T-----C-ATATTG--T-G-AT-G--T---CAC--
gi|87808 : A-AC-GAATCAC-A-TGATGC-CCTGAAATT----TT-GAATAT------------TT-AGG---TCTCC--T-T-----C-ATATTG--T-G-AT-G--T---CAC--
gi|87809 : --------------T--------------------------AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTT--CA-ATTGTGA-T--G-TCAC
gi|87810 : aacgaatcaa-AA-CGAATC--AC-A---TG-ATGCC---C-TG-AAAG----TTT-TAAT-ATTACATC-TCTG-T-TC-AACT-GT-G--A--CGTCAC
gi|87811 : --------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|87797 ): ATGATGGACAAAAACGAATCACATGTCATAGAATTTTTAATTAATTATTCTTCTTTAACTTGAATCAACTTATGATGCATATAAACCAGAATTTTCCGGAAAAGAATAACATCTTCATGCCACTATGATGTCAC
Unaligned ( gi|87785 ): ATCCCACTCCGACACAATTTAGTTGAGCTTAATATGTTGGACAAAACGATTGCACATGACTCCCTTAAAATATTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 11111111111111 55555555555555555555555555555555555555555 1
lowQualScore : 3 6 3 00000000000000 3 22222222222222222222222222222222222222222 77777 0 33 5 1 99 1 1 1 3 44 2 4444 1 9999999999999 1 333 1 1 33333 1 4 11 1 2 2 33 222 22 6666 22 5 9999 1 333 1 1 99999 1 1 2 2 2 2 5 2 33 33
lowQualScore : . . . .............. . ......................................... ..... . .. . . .. . . . . .. . .... . ............. . ... . . ..... . . .. . . . .. ... .. .... .. . .... . ... . . ..... . . . . . . . . .. ..
lowQualScore : 1 2 1 11111111111111 1 00000000000000000000000000000000000000000 77777 9 99 7 7 22 7 3 3 9 33 6 5555 3 0000000000000 4 999 4 4 44444 4 1 88 3 7 7 22 333 00 6666 55 5 6666 8 222 8 8 66666 8 9 0 1 1 1 3 7 77 77
consensus : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-CGACGC-CCCGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----TTT-CAAT-ATTACGTC-TCCT-T-TC-AATT-GT-G--A--CGTCAC
Reference ( family-425 ) : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-CGACGC-CCCGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----TTT-CAAT-ATTACGTC-TCCT-T-TC-AATT-GT-G--A--CGTCAC
gi|87771 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATGATTGGACAAAAACGAATCACATGAC-----ACCCTGAAATTTTCAATATT-AGGTATCCCTT--CA-ATTGTGA-T--G-TCAGAA-AC-GAGTCAT-A-CGACGC-CCCAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--
gi|87772 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATATTTGGACAAAAACGAATCACATGAT-----GCCCTGAAATTTTGAATATT-AGGTCTCCTTT--CATATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TT-CAATA-------------TT-ATG---TCTACT-T-T-----T-A-ATTG--T-G-AT-G--T---CAC--
gi|87773 : TTTATTCCTGCTTCAGACAAATTTTGT-T-------GATTTATA-TT--------------TTGGACAAAAAACGAATCACATG----AT-----GCCCTGAAATTTTGAATATTTAGGTCTCC-TT--CATATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TA-TAATA-------------TT-ATG---TCTACT-T-T-----T-A-AATG--T-G-AT-G--T---CAC--
gi|87773 : A-AC-GAATCAC-A-TGATGC-CCTGAAATT----TT-GAATA-------------TTTAGG---TCTCC--T-T-----C-ATATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---TG-ATGCT---C-CA-AAAT----TTA-TAAT-ATTATGTC-TACT-T-TT-AAAT-GT-G--A--TGTCAC
gi|87774 : tttattcctgcttcagacaaattttgttgatttatattttggacaaaaTTTATCCC-GCTTCAGACAAATTTTGT-T-------G------A-TT--------------TAATGATTGACAAAAACGAATCAAT--AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCATACGGAGTCACTA-TTAAGC-CCCAAAATT----TT-CAATA-------------TA-AGG---TCACCT-T-T-----C---ATTG--T-G-ATGG--T---CAC--
gi|87775 : TTTATCCC-GCTTCAGAC---TTT-GT-T-------G------A-TT--------------T--------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCATCA-AC-GAGTCGT-A-AGATGC-CTC-AAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----TTT-CAAT-ATTAGGTC-TCCT-T-TC-AATT-GT-G--A--TGTCAC
gi|87776 : TTTATCCC-ACTTCAGACAAATTT-GC-T-------G------A-TA--------------T--------------------------AT-----G
gi|87776 : TATT-AG------TTTGACA-ACTGTGA-T--G-TCACTT-GC-AAATCAT-T-CGATGC-CCCGAAATT----TC-Cattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgtattagtttgacaactgtgatgtcacttgcaaatcattcgatgccccgaaatttcc
gi|87777 : tttatcccacttcagacaaatttgctgatatatgattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgTTTATCCC-ACTGCAAACAAATTT-GT-T-------G------A-T
gi|87777 : -----C-A-GTTG--T-GTAT-GATTGGACAT--A-AA-TAAATC--AC-A---TG-ACACCACCC-TG-AAATG---TTTATAAT-ATTATGTC-TCCA-T-TC-AGCT-GT-G--A--CGTacagttgtgtatgattggacataaataaatcacatgacaccaccctgaaatgtttataatattatgtctccattcagctgtgacgt
gi|87778 : tttatcccactgcaaacaaatttgttgataTTCATCCC-GATTCAGACAAATCT-GT-C-------G------A-CA--------------T--------------------------GC-----GACCGGA
gi|87778 : -AA-CGTATC--AC-A---TA-ACGCC---C-TG-CAAT----TTT-AAAT-ATTACGTC-Ttaaaaacgtatcacataacgccctgcaattttaaatattacgtct
gi|87779 : ttcatcccgattcagacaaatctgtcgacatgcgaccggataaaA-AC-GAATCGC-A-TGACGT-CCCGAAACT----T
gi|87780 : tttatcctgtttcgaacaaagaatggataaaaTTATTCT-GCTTCAGACAAATTT-GT-TGATATATG------A-TTGGACAAAAACGAATC--------------------------ACATGATGCCCTGAAAGTTTTAATATT-ACATCTCTGTT--CA-ACTGTGA-C--G-TCACTT-AC-GAGGCAT-A-CGACAC-CCATAAA-T----TT-AAATA-------------TT-ACG---TCTCTG-T-T-----C-A-ACTA--T-G-AT-G--T---CAC--
gi|87780 : A-AC-GAATCAC-A-TGATGC-CCTGAAAGT----TT-TAATA-------------TT-ACA---TCTCTG-T-T-----C-A-ACTG--T-G-AC-G--T---CAC--T-TA-CGAGGC--AT-A---CG-ACACC---C-AT-AAA-----TTT-AAAT-ATTACGTC-TCTG-T-TC-AACT-AT-G--A--TGTCAC
gi|87781 : ttattctgcttcagacaaatttgttgatatatgattggacaaaTTATCCC-GCTTCAGACAAATTT-CT-T-------G------A-TT--------------T--------------------------AT-----G
gi|87782 : TTATCCC-GCTCCAGACAAATTG-GT-T-------A------A-TA--------------T--------------------------Aattggacaaaaacgaatcac
gi|87782 : --CA-AATGTGA-C--G-ACACTT-GC-GAGTTAT-A-CGACGT-ATTGGAATT----TTTCAACA-------------ttatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgacaaatgtgacgacacttgcgagttatacgacgtattggaatttttcaaca
gi|87783 : ttatcccgctccagacaaattggttaatatattatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgaTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATGATTGGACAAAAACGAATCACATGAC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAT-A-CGATGT-CCCGAAATT----TT-CAATA-------------TT-AAG---TCTCCT-T-T-----T-A-ATTG--T-G-AC-G--T---AAC--
gi|87784 : CTGT--TG-ATTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACGCACCTAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T----AC--C-AAACG-GTC--AC-A---TG-ATGCC---C-CA-AAAT----TTC-CAAT-ATTAGGTC-TCCT-T-TC-AATT-GTGG--A--TGTCAC
gi|87786 : tatccgcgcttcagacaatCC-GCTTCAGACAAATTT-TTGT-------G------AGTT--------------T--------------------------AT-----G
gi|87786 : A-AC-GAATCAC-A-TGACGC-CT-GAAATTAA--TT-CAATA-------------TT-AGGA--TCTCTC-T-T-----C-A-ATTGATT-G-AT-G--T---CAC--C-AAACGAGTC--ATTA---CG-ACGCC---C-CA-AAAT----TTT-CAAT-ATTAGGTC-TCCTGTATC-AATT-GT-G--AATGGTCACgatctggacaaaaacgaatcacatgacgcctgaaattaattcaatattaggatctctcttcaattgattgatgtcaccaaacgagtcattacgacgccccaaaattttcaatattaggtctcctgtatcaattgtgaatggtcac
gi|87787 : ccgcttcagacaaatttttgtgagtttatggatctggacaaaA-AC-GAATCAC-A-TGATTC-TCTGA--TT----TT-CAATACATCCATCTCAGTTC-AGGATGTGTATT-T-TATTGAC-A-ATTG--T-G-AC-A--T---CAC--T-TA-CAAATC--GC-A---TG-ATGCC---C-TGAAAAT----TTT-
gi|87788 : ttcagacaaatgtgtgtagataactgattggataaaaaTTGTGA-T--G-TCACCA-AC-GAGTCAT-A-CGATGT-CCCGAAATT----TT-CAATA-------------TT-AAG---TCTCCT-T-T-----T-A-ATTG--T-G-AC-G--T---AAC--T--------TA--AC-A----G-ACGCT---T-CG-GAA-----TTT-CAAT-A
gi|87789 : TTGTGA-T--G-TCAGAA-AC-GAGTCAT-A-CGACGC-CCCAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----TTT-CTAT-ATTACGTC-TCCT-T-TT-AATT-GT-G--A--CGTCA
gi|87790 : TTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----TTT-CTAT-ATTACGTC-TCCT-T-TT-AATT-GT-G--A--CGTCA
gi|87791 : TTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TT-CAATA-------------TT-ATG---TCTACT-T-T-----T-A-ATTG--T-G-AT-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----TTT-CAAT-ACACCATC-TCCT-T-GC-A
gi|87792 : TTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TA-TAATA-------------TT-ATG---TCTACT-T-T-----T-A-AATG--T-G-AT-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----TTT-CAAT-ACACCATC-TCCT-T-GC-Agagatgt
gi|87793 : TTGTGAAT--GGTCACCA-AT-GAGTCAT-AACGACGC-CCAGAAACTCGGTTT-CAATA-------------TT--GG---TCTCCT-T-T-----TAA-ATTG--T-G-AC-G--T---CAC--gagatgt
gi|87794 : TTGTGA-T--G-TCACCA-AC-GAGTCGT-A-AGATGC-CTCAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----TTT-CAAT-A-TAGGTC-TCCT-T-TC-AATT-GT-G--A--TGTCAC
gi|87795 : TTGTGA-T--G-TCACCA-AC-GAGTCGT-A-AGATGC-CTCAAAATT----TT-CAATA--------------T-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTT--ATAA---CG-ACACC---C-AG-AAAT----TTT-CAGT-ATTATGTC-TCCT-T-TT-AATT-GT-G--A--TGTCAC
gi|87796 : TTGTGA-T--G-TCACCA-AC-GAGTTAT-AACGACAC-CCAGAAATT----TT-CAGTA-------------TT-ATG---TCTCCT-T-T-----T-A-ATTG--T-G-AT-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-TG-AAA-----ATT-CAAT-ATACCATC-TCCT-T-GC-AA
gi|87798 : -AG-CGAATC--AC-A---TG-ATGCC---C-TG-AAAT----TTT-CAAG-AGTACGTC-TACT-T-AC-Aggatgat
gi|87799 : atgattggacaaaA-AC-G-GTCAC-A-TGATGC-CCCAAAATT----TC-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--TGG-AT-G--T---CAC--CAAA-TGAGTCCAAT-A---CGAACGTC---CGCA-AAAT----TTT-CAATGAGTACGTCTTCCT-T-TT-AATTGGT-G--A--CGTCAC
gi|87800 : aA-AC-GAGTCATTA-CGACGC-CCCAAAATT----TT-CAATA-------------TT-AGG---TCTCCTGTAT-----C-A-ATTG--T-GAATGG--T---CAC--C-AA-TGAGTC--ATAA---CG-ACGCC---C-AG-AAACTCGGTTT-CAAT-ATTG-GTC-TCCT-T-TTAAATT-GT-G--A--CGTCAC
gi|87801 : aA-CGAGGC--AT-A---CG-ACACC---C-AT-AAAT----TT--AAAT-ATTACGTC-TCTG-T-TC-AACT-AT-G--A--TGTCAC
gi|87802 : -GAGTCACTA-TTAAGC-CCCAAAATT----TT-CAATA-------------TA-AGG---TCACCT-T-T-----C-A--TTG--T-G-AT-GG-T---CACATT-A---GAGTC---C-ATGGCG-ACGTC---C-CG-AAAT----TTT-CAAT-ATAACGTC--CCT-T-T--AATTGGT-GAAA--CGTCAC
gi|87803 : TTCAATATT-AGGTCTCCTTT--CA-ACTGTGA-C--T-TCAC
gi|87804 : CTGT--TG-ATTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACGCACCTAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---
gi|87805 : TTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACGC-CCTGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--
gi|87806 : TTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACAC-CCTGAAATT----TT-CAATA-------------TT-AGG---TATCCC-T-T-----C-A-ATTG--T-G-AT-G--T---CA
gi|87807 : A-AC-GAATCAC-A-TGATGC-CCTGAAATT----TT-GAATA-------------TT-AGG---TCTCCT-T-T-----C-ATATTG--T-G-AT-G--T---CAC--
gi|87808 : A-AC-GAATCAC-A-TGATGC-CCTGAAATT----TT-GAATAT------------TT-AGG---TCTCC--T-T-----C-ATATTG--T-G-AT-G--T---CAC--
gi|87809 : --------------T--------------------------AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTT--CA-ATTGTGA-T--G-TCAC
gi|87810 : aacgaatcaa-AA-CGAATC--AC-A---TG-ATGCC---C-TG-AAAG----TTT-TAAT-ATTACATC-TCTG-T-TC-AACT-GT-G--A--CGTCAC
gi|87811 : --------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCA
blockSeqs : T T G GATATATG G TATATTTGGACAAAAACGAATCACATG ATGAT T GA T A TG G T G T AC A CGGT T CATCCATCTCAGT T ATG G A ATTGA A T AT G T G AT GGA AT AAA CA T TGGC A ACC G A CTCGG A G T G A A G G AA AT
blockSeqs : . T . GATTTAT . TATGATTGGACAAAAACGAATCACATG . C . T . TG . . . T AC A AA . T . A . . . . T . . A G G . . AAA . A A . . . . TG . . . . . . G . . .
blockSeqs : . . . G . TAATGATTGACAAAAACGAATCAAT . C . . . TG . . . T T . . . . . . . . . . T . . . . . . . AAA . A T . . . . T . . . . . . . . . .
blockSeqs : . . . G . TTGGACAAAAAACGAATCACATG . . . . . TG . . . . T . . . . . . . . . . . . . . . . . . AA . . T . . . . T . . . . . . . . . .
blockSeqs : . . . G . GGACAAAAACGAATC . . . . . . . . . . T . . . . . . . . . . . . . . . . . . AA . . C . . . . T . . . . . . . . . .
blockSeqs : . . . G . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . AA . . T . . . . T . . . . . . . . . .
blockSeqs : . . . G . T . . . . . . . . . . A . . . . . . . . . . . . . . . . . . TA . . C . . . . T . . . . . . . . . .
blockSeqs : . . . G . T . . . . . . . . . . C . . . . . . . . . . . . . . . . . . TA . . T . . . . T . . . . . . . . . .
blockSeqs : . . . G . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . AA . . C . . . . T . . . . . . . . . .
blockSeqs : . . . A . T . . . . . . . . . . C . . . . . . . . . . . . . . . . . . AA . . C . . . . T . . . . . . . . . .
blockSeqs : . . . G . T . . . . . . . . . T . . . . . . . . . . . . . . . . . . AA . . A . . . . T . . . . . . . . . .
blockSeqs : . . . G . T . . . . . . . . . C . . . . . . . . . . . . . . . . . . AA . . C . . . . T . . . . . . . . . .
blockSeqs : . . . . . . . . C . . . . . . . . . . . . . . . . . . AG . . T . . . . T . . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . . . . AA . . C . . . . T . . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . . . . AA . . C . . . . T . . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . . . . A . . C . . . . G . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . .
blockSeqs : . . T . .
blockSeqCons : T****************************************
originalCons : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-CGACGC-CCCGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----TTT-CAAT-ATTACGTC-TCCT-T-TC-AATT-GT-G--A--CGTCAC
finalCons : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TTT----------------------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-CGACGC-CCCGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----TTT-CAAT-ATTACGTC-TCCT-T-TC-AATT-GT-G--A--CGTCAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|87797 ): ATGATGGACAAAAACGAATCACATGTCATAGAATTTTTAATTAATTATTCTTCTTTAACTTGAATCAACTTATGATGCATATAAACCAGAATTTTCCGGAAAAGAATAACATCTTCATGCCACTATGATGTCAC
Unaligned ( gi|87785 ): ATCCCACTCCGACACAATTTAGTTGAGCTTAATATGTTGGACAAAACGATTGCACATGACTCCCTTAAAATATTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 11111111111111 55555555555555555555555555555555555555555 1
lowQualScore : 3 6 3 00000000000000 3 22222222222222222222222222222222222222222 77777 0 33 5 1 99 1 1 1 3 44 2 4444 1 9999999999999 1 333 1 1 33333 1 4 11 1 2 2 33 222 22 6666 22 5 9999 1 333 1 1 99999 1 1 2 2 2 2 5 2 33 33
lowQualScore : . . . .............. . ......................................... ..... . .. . . .. . . . . .. . .... . ............. . ... . . ..... . . .. . . . .. ... .. .... .. . .... . ... . . ..... . . . . . . . . .. ..
lowQualScore : 1 2 1 11111111111111 1 00000000000000000000000000000000000000000 77777 9 99 7 7 22 7 3 3 9 33 6 5555 3 0000000000000 4 999 4 4 44444 4 1 88 3 7 7 22 333 00 6666 55 5 6666 8 222 8 8 66666 8 9 0 1 1 1 3 7 77 77
consensus : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-CGACGC-CCCGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----TTT-CAAT-ATTACGTC-TCCT-T-TC-AATT-GT-G--A--CGTCAC
Reference ( family-425 ) : TTTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------T--------------------------AC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-CGACGC-CCCGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---CG-ACGCC---C-CG-AAAT----TTT-CAAT-ATTACGTC-TCCT-T-TC-AATT-GT-G--A--CGTCAC
gi|87771 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATGATTGGACAAAAACGAATCACATGAC-----ACCCTGAAATTTTCAATATT-AGGTATCCCTT--CA-ATTGTGA-T--G-TCAGAA-AC-GAGTCAT-A-CGACGC-CCCAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--
gi|87772 : TTTATCCT-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATATTTGGACAAAAACGAATCACATGAT-----GCCCTGAAATTTTGAATATT-AGGTCTCCTTT--CATATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TT-CAATA-------------TT-ATG---TCTACT-T-T-----T-A-ATTG--T-G-AT-G--T---CAC--
gi|87773 : TTTATTCCTGCTTCAGACAAATTTTGT-T-------GATTTATA-TT--------------TTGGACAAAAAACGAATCACATG----AT-----GCCCTGAAATTTTGAATATTTAGGTCTCC-TT--CATATTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TA-TAATA-------------TT-ATG---TCTACT-T-T-----T-A-AATG--T-G-AT-G--T---CAC--
gi|87773 : A-AC-GAATCAC-A-TGATGC-CCTGAAATT----TT-GAATA-------------TTTAGG---TCTCC--T-T-----C-ATATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AC-A---TG-ATGCT---C-CA-AAAT----TTA-TAAT-ATTATGTC-TACT-T-TT-AAAT-GT-G--A--TGTCAC
gi|87774 : tttattcctgcttcagacaaattttgttgatttatattttggacaaaaTTTATCCC-GCTTCAGACAAATTTTGT-T-------G------A-TT--------------TAATGATTGACAAAAACGAATCAAT--AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCATACGGAGTCACTA-TTAAGC-CCCAAAATT----TT-CAATA-------------TA-AGG---TCACCT-T-T-----C---ATTG--T-G-ATGG--T---CAC--
gi|87775 : TTTATCCC-GCTTCAGAC---TTT-GT-T-------G------A-TT--------------T--------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCATCA-AC-GAGTCGT-A-AGATGC-CTC-AAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----TTT-CAAT-ATTAGGTC-TCCT-T-TC-AATT-GT-G--A--TGTCAC
gi|87776 : TTTATCCC-ACTTCAGACAAATTT-GC-T-------G------A-TA--------------T--------------------------AT-----G
gi|87776 : TATT-AG------TTTGACA-ACTGTGA-T--G-TCACTT-GC-AAATCAT-T-CGATGC-CCCGAAATT----TC-Cattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgtattagtttgacaactgtgatgtcacttgcaaatcattcgatgccccgaaatttcc
gi|87777 : tttatcccacttcagacaaatttgctgatatatgattggacaaaaacgaatcatgatgccctgattttttttttataactatgtctccatgctatgggtgTTTATCCC-ACTGCAAACAAATTT-GT-T-------G------A-T
gi|87777 : -----C-A-GTTG--T-GTAT-GATTGGACAT--A-AA-TAAATC--AC-A---TG-ACACCACCC-TG-AAATG---TTTATAAT-ATTATGTC-TCCA-T-TC-AGCT-GT-G--A--CGTacagttgtgtatgattggacataaataaatcacatgacaccaccctgaaatgtttataatattatgtctccattcagctgtgacgt
gi|87778 : tttatcccactgcaaacaaatttgttgataTTCATCCC-GATTCAGACAAATCT-GT-C-------G------A-CA--------------T--------------------------GC-----GACCGGA
gi|87778 : -AA-CGTATC--AC-A---TA-ACGCC---C-TG-CAAT----TTT-AAAT-ATTACGTC-Ttaaaaacgtatcacataacgccctgcaattttaaatattacgtct
gi|87779 : ttcatcccgattcagacaaatctgtcgacatgcgaccggataaaA-AC-GAATCGC-A-TGACGT-CCCGAAACT----T
gi|87780 : tttatcctgtttcgaacaaagaatggataaaaTTATTCT-GCTTCAGACAAATTT-GT-TGATATATG------A-TTGGACAAAAACGAATC--------------------------ACATGATGCCCTGAAAGTTTTAATATT-ACATCTCTGTT--CA-ACTGTGA-C--G-TCACTT-AC-GAGGCAT-A-CGACAC-CCATAAA-T----TT-AAATA-------------TT-ACG---TCTCTG-T-T-----C-A-ACTA--T-G-AT-G--T---CAC--
gi|87780 : A-AC-GAATCAC-A-TGATGC-CCTGAAAGT----TT-TAATA-------------TT-ACA---TCTCTG-T-T-----C-A-ACTG--T-G-AC-G--T---CAC--T-TA-CGAGGC--AT-A---CG-ACACC---C-AT-AAA-----TTT-AAAT-ATTACGTC-TCTG-T-TC-AACT-AT-G--A--TGTCAC
gi|87781 : ttattctgcttcagacaaatttgttgatatatgattggacaaaTTATCCC-GCTTCAGACAAATTT-CT-T-------G------A-TT--------------T--------------------------AT-----G
gi|87782 : TTATCCC-GCTCCAGACAAATTG-GT-T-------A------A-TA--------------T--------------------------Aattggacaaaaacgaatcac
gi|87782 : --CA-AATGTGA-C--G-ACACTT-GC-GAGTTAT-A-CGACGT-ATTGGAATT----TTTCAACA-------------ttatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgacaaatgtgacgacacttgcgagttatacgacgtattggaatttttcaaca
gi|87783 : ttatcccgctccagacaaattggttaatatattatcgtacaaaagggaattaaatgaaactctggaatttttattaatacttatccgttcagaggatataatagcttgaTATCCC-GCTTCAGACAAATTT-GT-T-------G------A-TT--------------TATGATTGGACAAAAACGAATCACATGAC-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCACCA-AC-GAGTCAT-A-CGATGT-CCCGAAATT----TT-CAATA-------------TT-AAG---TCTCCT-T-T-----T-A-ATTG--T-G-AC-G--T---AAC--
gi|87784 : CTGT--TG-ATTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACGCACCTAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T----AC--C-AAACG-GTC--AC-A---TG-ATGCC---C-CA-AAAT----TTC-CAAT-ATTAGGTC-TCCT-T-TC-AATT-GTGG--A--TGTCAC
gi|87786 : tatccgcgcttcagacaatCC-GCTTCAGACAAATTT-TTGT-------G------AGTT--------------T--------------------------AT-----G
gi|87786 : A-AC-GAATCAC-A-TGACGC-CT-GAAATTAA--TT-CAATA-------------TT-AGGA--TCTCTC-T-T-----C-A-ATTGATT-G-AT-G--T---CAC--C-AAACGAGTC--ATTA---CG-ACGCC---C-CA-AAAT----TTT-CAAT-ATTAGGTC-TCCTGTATC-AATT-GT-G--AATGGTCACgatctggacaaaaacgaatcacatgacgcctgaaattaattcaatattaggatctctcttcaattgattgatgtcaccaaacgagtcattacgacgccccaaaattttcaatattaggtctcctgtatcaattgtgaatggtcac
gi|87787 : ccgcttcagacaaatttttgtgagtttatggatctggacaaaA-AC-GAATCAC-A-TGATTC-TCTGA--TT----TT-CAATACATCCATCTCAGTTC-AGGATGTGTATT-T-TATTGAC-A-ATTG--T-G-AC-A--T---CAC--T-TA-CAAATC--GC-A---TG-ATGCC---C-TGAAAAT----TTT-
gi|87788 : ttcagacaaatgtgtgtagataactgattggataaaaaTTGTGA-T--G-TCACCA-AC-GAGTCAT-A-CGATGT-CCCGAAATT----TT-CAATA-------------TT-AAG---TCTCCT-T-T-----T-A-ATTG--T-G-AC-G--T---AAC--T--------TA--AC-A----G-ACGCT---T-CG-GAA-----TTT-CAAT-A
gi|87789 : TTGTGA-T--G-TCAGAA-AC-GAGTCAT-A-CGACGC-CCCAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----TTT-CTAT-ATTACGTC-TCCT-T-TT-AATT-GT-G--A--CGTCA
gi|87790 : TTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--AT-A---CG-ACGCC---C-CG-AAAT----TTT-CTAT-ATTACGTC-TCCT-T-TT-AATT-GT-G--A--CGTCA
gi|87791 : TTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TT-CAATA-------------TT-ATG---TCTACT-T-T-----T-A-ATTG--T-G-AT-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----TTT-CAAT-ACACCATC-TCCT-T-GC-A
gi|87792 : TTGTGA-T--G-TCACCA-AC-GAGTCAC-A-TGATGC-TCCAAAATT----TA-TAATA-------------TT-ATG---TCTACT-T-T-----T-A-AATG--T-G-AT-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-CG-AAA-----TTT-CAAT-ACACCATC-TCCT-T-GC-Agagatgt
gi|87793 : TTGTGAAT--GGTCACCA-AT-GAGTCAT-AACGACGC-CCAGAAACTCGGTTT-CAATA-------------TT--GG---TCTCCT-T-T-----TAA-ATTG--T-G-AC-G--T---CAC--gagatgt
gi|87794 : TTGTGA-T--G-TCACCA-AC-GAGTCGT-A-AGATGC-CTCAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTC--GT-A---AG-ATGCC---T-CA-AAAT----TTT-CAAT-A-TAGGTC-TCCT-T-TC-AATT-GT-G--A--TGTCAC
gi|87795 : TTGTGA-T--G-TCACCA-AC-GAGTCGT-A-AGATGC-CTCAAAATT----TT-CAATA--------------T-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--C-AA-CGAGTT--ATAA---CG-ACACC---C-AG-AAAT----TTT-CAGT-ATTATGTC-TCCT-T-TT-AATT-GT-G--A--TGTCAC
gi|87796 : TTGTGA-T--G-TCACCA-AC-GAGTTAT-AACGACAC-CCAGAAATT----TT-CAGTA-------------TT-ATG---TCTCCT-T-T-----T-A-ATTG--T-G-AT-G--T---CAC--T--------TA--AC-A----G-AGGCT---T-TG-AAA-----ATT-CAAT-ATACCATC-TCCT-T-GC-AA
gi|87798 : -AG-CGAATC--AC-A---TG-ATGCC---C-TG-AAAT----TTT-CAAG-AGTACGTC-TACT-T-AC-Aggatgat
gi|87799 : atgattggacaaaA-AC-G-GTCAC-A-TGATGC-CCCAAAATT----TC-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--TGG-AT-G--T---CAC--CAAA-TGAGTCCAAT-A---CGAACGTC---CGCA-AAAT----TTT-CAATGAGTACGTCTTCCT-T-TT-AATTGGT-G--A--CGTCAC
gi|87800 : aA-AC-GAGTCATTA-CGACGC-CCCAAAATT----TT-CAATA-------------TT-AGG---TCTCCTGTAT-----C-A-ATTG--T-GAATGG--T---CAC--C-AA-TGAGTC--ATAA---CG-ACGCC---C-AG-AAACTCGGTTT-CAAT-ATTG-GTC-TCCT-T-TTAAATT-GT-G--A--CGTCAC
gi|87801 : aA-CGAGGC--AT-A---CG-ACACC---C-AT-AAAT----TT--AAAT-ATTACGTC-TCTG-T-TC-AACT-AT-G--A--TGTCAC
gi|87802 : -GAGTCACTA-TTAAGC-CCCAAAATT----TT-CAATA-------------TA-AGG---TCACCT-T-T-----C-A--TTG--T-G-AT-GG-T---CACATT-A---GAGTC---C-ATGGCG-ACGTC---C-CG-AAAT----TTT-CAAT-ATAACGTC--CCT-T-T--AATTGGT-GAAA--CGTCAC
gi|87803 : TTCAATATT-AGGTCTCCTTT--CA-ACTGTGA-C--T-TCAC
gi|87804 : CTGT--TG-ATTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACGCACCTAAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---
gi|87805 : TTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACGC-CCTGAAATT----TT-CAATA-------------TT-AGG---TCTCCT-T-T-----C-A-ATTG--T-G-AT-G--T---CAC--
gi|87806 : TTATGA-TTGG-ACAAAA-AC-GAATCAC-A-TGACAC-CCTGAAATT----TT-CAATA-------------TT-AGG---TATCCC-T-T-----C-A-ATTG--T-G-AT-G--T---CA
gi|87807 : A-AC-GAATCAC-A-TGATGC-CCTGAAATT----TT-GAATA-------------TT-AGG---TCTCCT-T-T-----C-ATATTG--T-G-AT-G--T---CAC--
gi|87808 : A-AC-GAATCAC-A-TGATGC-CCTGAAATT----TT-GAATAT------------TT-AGG---TCTCC--T-T-----C-ATATTG--T-G-AT-G--T---CAC--
gi|87809 : --------------T--------------------------AC-----GCCCTGAAATTTTCAATATTCAGGTCTCCTTT--CA-ATTGTGA-T--G-TCAC
gi|87810 : aacgaatcaa-AA-CGAATC--AC-A---TG-ATGCC---C-TG-AAAG----TTT-TAAT-ATTACATC-TCTG-T-TC-AACT-GT-G--A--CGTCAC
gi|87811 : --------------------------AT-----GCCCTGAAATTTTCAATATT-AGGTCTCCTTT--CA-ATTGTGA-T--G-TCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|87797 ): ATGATGGACAAAAACGAATCACATGTCATAGAATTTTTAATTAATTATTCTTCTTTAACTTGAATCAACTTATGATGCATATAAACCAGAATTTTCCGGAAAAGAATAACATCTTCATGCCACTATGATGTCAC
Unaligned ( gi|87785 ): ATCCCACTCCGACACAATTTAGTTGAGCTTAATATGTTGGACAAAACGATTGCACATGACTCCCTTAAAATATTA