lowQualScore : 2 55 1 1 1 3 1 11 1 777 55 333 1 1 22 2 1 1 1 44444 11 1 3333 2
lowQualScore : . .. . . . . . .. . ... .. ... . . .. . . . . ..... .. . .... .
lowQualScore : 1 11 0 0 0 8 0 33 0 888 66 000 0 0 44 0 0 0 0 22222 55 1 9999 2
consensus : TTTATCA-CATG-TTTA-C-TCCT-TT-ATCC-CGTG--GATATCA-CT--CAT-AACATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
Reference ( gi|58380 ) : TTTATCA-CATA-TTTA-C-TCCT-TT-ATCC-CGTG--GATATCA-CT--TAT-GACATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58381 : TTTATCA-CATT-TTTA-C-TCCT-TT-ATCC-CGTG--GATATTA-CT--CAT-AACATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGACTG
gi|58382 : TTTATCA-CATG-TTTA-C-TCCT-TT-ATCC-CGTG--AATATCG-CT--CAT-AACATAA---A-T-TC--T-A-A-TCA-TT-----A--CA-A----TG-TGTTTTCATACGCCGATTG
gi|58385 : TTTATCA-CATG-TTTA-C-TCCT-TT-ATCC-CGTG--TATATCA-CT--CAT-ACCATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-C----TA-TGTTTTCCTACACCGATT
gi|58383 : TTTATCA-CATG-TTTA-C-TCCT-TT-ATCC-CATG--GATATCA-CT--CCT-AACATAA---A-T-TC--T-A-A-TTA-TT-----A--CT-T----TG-TGTTTTCCTACGCCAATTG
gi|58390 : TTTATCA-CATG-TTTA-C-TCCT-TT-ATCC-TCTG--GATATCA-CT--CAT-TACAAAA---A-T-TC--T-G-A-TTA-TC-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58388 : TTTATCA-CATG-TTTA-C-TCCT-TA-ATAC-CGTG--GATATCA-CT--CAT-AACATAA---A-T-TA--T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCAACTG
gi|58387 : TTTATTA-CATG-TTTA-C-TCCT-TT-ATCC-CTTG--TATATCA-CT--CAT-AACATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-C----TA-TTTTTTCCTACGCCGATTG
gi|58389 : TTTATCA-CATG-TGTA-T-TCCT-TT-ATCC-CGTG--GATATCA-CT--CAT-AACATAA---A-T-TC--T-A-A-TTA-TC-----A--TA-C----TG-TGTTTTCCTACGCCCATT
gi|58392 : TTTATCA-CATG-TTTA-C-TCCT-TT-ATTC-CATT--GATATCA-CC--CAT-GACG--A---A-T-TC--T-A-A-TTA-TT-----A--CA-C----CG-TGTTTTCCTACGCCGATTG
gi|58391 : TTTATCA-CATG-TTTT-C--CCT-TT-ATCC-CGTG--GATATCA-CT--CAT-AACATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-C-------TGTTTTCCTATGCCAATTG
gi|58384 : TTTATCA-CATG-TTTA-C-TC----T-ATCC-CATG--GATATCA--T--CAT-AACATAA---A-T-TC--T-A-A-TTA-TT-----A--CT-T----TG-TGTTTTCCTACGCCAATTG
gi|58395 : TTTTTCAACATA-TTTA-C-TCCT-TT-ATCC--GTG--G-TATCA-CT--CAT-AACATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-C----CG-TGTTTTACTACGCCGA
gi|58393 : TTGATCA-CATG-CTTA-C-TCCT-TT-ATCC-CGTC--AATATCA-CC--CAT-AACATAA---A-C-TC--T-A-A-CTA-TC-----A--CA-C----GG-TGTTTTCCTACGCCGAT
gi|58397 : TTTATCA-CATG-CT-A-C-TCCT-TT-ATCT-TGTG--GATATCA-CT--CAT-AATATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-C----TG-TAGTTTTCTGCCCCAATTG
gi|58398 : TTTATCA-CATG-TTTA-C-TCCT-TTTATCC--GTG--GAT--CA-CT--CATCAACATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-C----TG-TGTTT--CTACGCCAAT
gi|58399 : TTTATCA-CATG-TTTA-C--CTT-TT-ATCC-CGTG--GATATCA-CT--C-T-AAC-T-A---A-T-TC--T-A-A-TTATTT-----A--CATC----TG-TGTTTTCCTACGCCGA
gi|58400 : TTTATCA-CATGGTTTA-C-TCCT-TT-ATCC-TGTG--GATAT-A-CT--AAT-GACATAA---A-T-TC--T-A-ATTTA-TT-----A---A-C----TG-TGTTTTCTTG-GGTGATTG
gi|58396 : TTTATCA-CATA-TTTA-C-TCCT-TTAATCC-CGTG--ATTATCA-CT--CAT-AAC-TAA---A-T-TC--T-A-A-TTA--T-----A--CA-C----CG-TG-TTCCTTACTCCGA
gi|58402 : TTTATCA-CATG-TTTA-C-TCTT-TT-ATCC-CCTG--GATATC--------------------A-T-TC--T-A-A-TT--TT-----A--CA-C----TA-TGTTTTCCTACGCCAATTG
gi|58401 : TTTATCA-CATG-TCTA-C-TCCT-TT-ATCC-CATG--GATATCA-CT--CAT-AACATAA---A-T-TC--T-A-A-CTA-GTGG---G--TA-T----TG-T-TTTTCC
gi|58386 : TTTTTCA-C-TG-TTT--C-TC-T-TT-ATCC-CGTGTTAATATCA-CT--CAT-ACCATAA---A-T-TT--C-A-A-TTA-TT-----A---A-C----TA-TGTTTTCCTACACCGATT
gi|58394 : TCTGTCA-CATA-TTTA-C-TCCT-TT-ATTC-CGTG--GATATCA-CT--CAC-AACAT-----------------------------------------TA-TGTTTTCCTACGCCGATTG
gi|58404 : TTTATCA-CGT---TCA-C-TCCT-TT-TTCC-CGTG--GATAT-------------------------TC--T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTAAGCTGATTG
gi|58403 : TTTATCA-CATG-TTTA-C-TCTT-TTTATTC-CGCG--GATATCA-AT--CAT-AACATAA---A-T-TC--T-A-A-TTA-T
gi|58405 : TTTAGCA-CATG-TTTA-C-TCCT-TT-ATCC-CGTG--GACATCA-CT--CAT-AACATA
gi|58406 : TTTATCA-CTTG-TTTA-C-TCCT-TT-ATCC-TGTG--GATGTCA-CT--------CATAA---A-T-TC--T-A-A-TTA-
gi|58407 : TTTATCA-CAAG-TTTA-C-TCCT-TT-ATCC-TGTG--GATATCA-C---TA--------------------T-A-A-TTA-TT-----A--CA-C----TA-TGTTTT
gi|58412 : TTTATCAACATA-TTTA-C-CCCT-TT-ATCC-AGTT--GATATCATCT--TAT-GTGATAT---T-T-TT--T-T-C-ATA-TC-----A--CA-T----AGTTGTATTCCTACGCCGCTTG
gi|58408 : TTTATCA-CATG-CTTA-T-TACT-TT-ATCC-CGTG--GATATCA-CT--CAA-AACATAA---
gi|58411 : TTGATCA-CACA-TTTA-C-CCCT-TT-ATCC-AATT--GATAAAA-CT--CAT-GTGATAA---G-T-TT--TCATA-TCA-CC-----A--CA-G----TA-TGTATTCCTACGCCG
gi|58409 : TTTATCA-CATA-TTTA-C-CCCT-TT-ATCC-AGTT--GATAACA-CTCATAT-G--ATAA---A-T-TTG-T-C-A--TA-TC-----ACCCA-CAG--TA-TATATTCCTACACC
gi|58413 : TTTATCA-CA-G-TTTA-C-TCTTGTT-ATCC-CGTG----------------T-GG-ATAA---A-T-TTCTT-A-A-TTA-TT-----A--CA-C----TGTTGTTTTC
gi|58410 : TTTTTCG-CATG-TTTA-A-CTCT-TT-A--C-CG-G--GATATCA-CT--CAT-AACAT-A---A-T-TC--T-A-A-
gi|58414 : TTATCA-TATG-ATTA-C-TCCT-TT-ATCC-CATG--GATATCA-CT--CAT-AGCATAA---A-T-TC--T-A-A-TTA-TT-----C--CA-CTATATA-TGTTTTCCTACGCCGACTG
gi|58415 : TTATCA-CATA-TTTA-C-CCCT-TT-ATTC-AGTT--GATGTCG-CT--CAT-ATAATAATTTG-T-TC--A-T-A-TCA-CC-----A--CA-G----CA-TGTGTCCCTATGCTG
gi|58416 : TATCA-CATG-TTTA-C-TCCT-TT-ATCC-TGGG--GATATTG-CT--CAT-AGCATAAAG-A-T-TT--T-A-A-TTA-TT-----A--CA-C----TA-TGTTTTCTTGTGCCGATTG
gi|58417 : TATCA-CATG-TTTA---TCCT-TT-AACC-CGTG--GATATCA-CT--CAT-AATATTT---A-T-TC--G-A-A-----------------------------TTTCCTACGCCGATTG
gi|58419 : A-CCTG-TTTA-C-TCCT-TT-ATCC-GG-G--AATATCA-CT--CAT-AACATAA---A-T-TC--G-A-A-TTA-TT-----A--
gi|58420 : ATA-TTTAACATCCT-TTTATTCACGTG--GATA-CA-CA--TA--AACATAA---A-TGTC--T-A-A-GTA-TTTACCAA--CA-C----TG-TGTTTTCCTACG
gi|58421 : -TTCT-TT-ATCC-CGTG--GATATTA-CT--CAT-AACATAA---
gi|58422 : -ATCC-CGTG--GATATCA-CT--CAT-TACATCA---ATT-TC--TAA-A-TTA-TT-----A--CA-C----TG-TTGTTTCTGACACCAACT
gi|58418 : -ATCC-CGTG--GATATC--------T-GACTCAT---A-T-T-----A-A-ACA-TT-----A--CA-C----TG-TGTTTTACTACGCCAATCG
gi|58423 : tatcttatttttatcacAT-AACATAA---A-T-TC--T-A-A-TTA-TT-----A--CA-------G-TGTTTTCCTACGCCGGTTG
Alignments
lowQualScore : 2 1 1 1 1 2 0 0 11 11 11 0 0 0 222 1 1 2 2 1 1 1 44444 11 1 3333 2
lowQualScore : . . . . . . . . .. .. .. . . . ... . . . . . . . ..... .. . .... .
lowQualScore : 0 0 0 0 0 8 9 9 33 33 33 9 9 9 999 0 0 0 0 0 0 0 11111 44 1 8888 2
consensus : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
Reference ( family-410 ) : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58380 : TTTATCA-CATA-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTTAT-GA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58381 : TTTATCA-CATT-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATT--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGACTG
gi|58382 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--AATATC--G-CTCAT-AA-CATAA---A-T-TC-T-A-A-TCA-TT-----A--CA-A----TG-TGTTTTCATACGCCGATTG
gi|58383 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--ATG--GATATC--A-CTCCT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CT-T----TG-TGTTTTCCTACGCCAATTG
gi|58384 : TTTATCA-CATG-TTTA-C-TC----T-A-TCC-C--ATG--GATATC--A--TCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CT-T----TG-TGTTTTCCTACGCCAATTG
gi|58385 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--TATATC--A-CTCAT-AC-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TA-TGTTTTCCTACACCGATT
gi|58386 : TTTTTCA-C-TG-TTT--C-TC-T-TT-A-TCC-C--GTGTTAATATC--A-CTCAT-AC-CATAA---A-T-TT-C-A-A-TTA-TT-----A---A-C----TA-TGTTTTCCTACACCGATT
gi|58387 : TTTATTA-CATG-TTTA-C-TCCT-TT-A-TCC-C--TTG--TATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TA-TTTTTTCCTACGCCGATTG
gi|58388 : TTTATCA-CATG-TTTA-C-TCCT-TA-A-TAC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TA-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCAACTG
gi|58389 : TTTATCA-CATG-TGTA-T-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TC-----A--TA-C----TG-TGTTTTCCTACGCCCATT
gi|58390 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-T--CTG--GATATC--A-CTCAT-TA-CAAAA---A-T-TC-T-G-A-TTA-TC-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58391 : TTTATCA-CATG-TTTT-C--CCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C-------TGTTTTCCTATGCCAATTG
gi|58392 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TTC-C--ATT--GATATC--A-CCCAT-GA-CG--A---A-T-TC-T-A-A-TTA-TT-----A--CA-C----CG-TGTTTTCCTACGCCGATTG
gi|58393 : TTGATCA-CATG-CTTA-C-TCCT-TT-A-TCC-C--GTC--AATATC--A-CCCAT-AA-CATAA---A-C-TC-T-A-A-CTA-TC-----A--CA-C----GG-TGTTTTCCTACGCCGAT
gi|58394 : TCTGTCA-CATA-TTTA-C-TCCT-TT-A-TTC-C--GTG--GATATC--A-CTCAC-AA-CAT----------------------------------------TA-TGTTTTCCTACGCCGATTG
gi|58395 : TTTTTCAACATA-TTTA-C-TCCT-TT-A-TCC----GTG--G-TATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----CG-TGTTTTACTACGCCGA
gi|58396 : TTTATCA-CATA-TTTA-C-TCCT-TT-AATCC-C--GTG--ATTATC--A-CTCAT-AA-C-TAA---A-T-TC-T-A-A-TTA--T-----A--CA-C----CG-TG-TTCCTTACTCCGA
gi|58397 : TTTATCA-CATG-CT-A-C-TCCT-TT-A-TCT-T--GTG--GATATC--A-CTCAT-AA-TATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TAGTTTTCTGCCCCAATTG
gi|58398 : TTTATCA-CATG-TTTA-C-TCCT-TTTA-TCC----GTG--GAT--C--A-CTCATCAA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTT--CTACGCCAAT
gi|58399 : TTTATCA-CATG-TTTA-C--CTT-TT-A-TCC-C--GTG--GATATC--A-CTC-T-AA-C-T-A---A-T-TC-T-A-A-TTATTT-----A--CATC----TG-TGTTTTCCTACGCCGA
gi|58400 : TTTATCA-CATGGTTTA-C-TCCT-TT-A-TCC-T--GTG--GATAT---A-CTAAT-GA-CATAA---A-T-TC-T-A-ATTTA-TT-----A---A-C----TG-TGTTTTCTTG-GGTGATTG
gi|58401 : TTTATCA-CATG-TCTA-C-TCCT-TT-A-TCC-C--ATG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-CTA-GTGG---G--TA-T----TG-T-TTTTCC
gi|58402 : TTTATCA-CATG-TTTA-C-TCTT-TT-A-TCC-C--CTG--GATATC---------------------A-T-TC-T-A-A-TT--TT-----A--CA-C----TA-TGTTTTCCTACGCCAATTG
gi|58403 : TTTATCA-CATG-TTTA-C-TCTT-TTTA-TTC-C--GCG--GATATC--A-ATCAT-AA-CATAA---A-T-TC-T-A-A-TTA-T
gi|58404 : TTTATCA-C--G-TTCA-C-TCCT-TT-T-TCC-C--GTG--GATAT--------------------------TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTAAGCTGATTG
gi|58405 : TTTAGCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GACATC--A-CTCAT-AA-CATA
gi|58406 : TTTATCA-CTTG-TTTA-C-TCCT-TT-A-TCC-T--GTG--GATGTC--A-CT-------CATAA---A-T-TC-T-A-A-TTA-
gi|58407 : TTTATCA-CAAG-TTTA-C-TCCT-TT-A-TCC-T--GTG--GATATC--A-CT-A--------------------T-A-A-TTA-TT-----A--CA-C----TA-TGTTTT
gi|58408 : TTTATCA-CATG-CTTA-T-TACT-TT-A-TCC-C--GTG--GATATC--A-CTCAA-AA-CATAA---
gi|58409 : TTTATCA-CATA-TTTA-C-CCCT-TT-A-TCC-A--GTT--GATAAC--A-CTCAT-AT-GATAA---A-T-TTGT-C-A--TA-TC-----ACCCA-CAG--TA-TATATTCCTACACC
gi|58410 : TTTTTCG-CATG-TTTA-A-CTCT-TT-A---C-C--G-G--GATATC--A-CTCAT-AA-CAT-A---A-T-TC-T-A-A-
gi|58411 : TTGATCA-CACA-TTTA-C-CCCT-TT-A-TCC-A--ATT--GATAAA--A-CTCAT-GT-GATAA---G-T-TT-TCATA-TCA-CC-----A--CA-G----TA-TGTATTCCTACGCCG
gi|58412 : TTTATCAACATA-TTTA-C-CCCT-TT-A-TCC-A--GTT--GATATC--ATCTTAT-GT-GATAT---T-T-TT-T-T-C-ATA-TC-----A--CA-T----AGTTGTATTCCTACGCCGCTTG
gi|58413 : TTTATCA-CA-G-TTTA-C-TCTTGTT-A-TCC-CGTGTG--GATA------------------AA---T-T-TCTT-A-A-TTA-TT-----A--CA-C----TGTTGTTTTC
gi|58414 : TTATCA-TATG-ATTA-C-TCCT-TT-A-TCC-C--ATG--GATATC--A-CTCAT-AG-CATAA---A-T-TC-T-A-A-TTA-TT-----C--CA-CTATATA-TGTTTTCCTACGCCGACTG
gi|58415 : TTATCA-CATA-TTTA-C-CCCT-TT-A-TTC-A--GTT--GATGTC--G-CTCAT-AT-AATAATTTG-T-TC-A-T-A-TCA-CC-----A--CA-G----CA-TGTGTCCCTATGCTG
gi|58416 : TATCA-CATG-TTTA-C-TCCT-TT-A-TCC-T--GGG--GATATT--G-CTCAT-AG-CATAAAG-A-T-TT-T-A-A-TTA-TT-----A--CA-C----TA-TGTTTTCTTGTGCCGATTG
gi|58417 : TATCA-CATG-TTTA---TCCT-TT-A-ACC-C--GTG--GATATC--A-CTCAT-AA-TATTT---A-T-TC-G-A-A-----------------------------TTTCCTACGCCGATTG
gi|58418 : TATCT-TATT-TTTA-T-CAC-----A-TCC-C--GTG--GATATCTGA-CTCAT-A---------------T-T-A-A-ACA-TT-----A--CA-C----TG-TGTTTTACTACGCCAATCG
gi|58419 : A-CCTG-TTTA-C-TCCT-TT-A-TCC-G--G-G--AATATC--A-CTCAT-AA-CATAA---A-T-TC-G-A-A-TTA-TT-----A--
gi|58420 : ATA-TTTAACATCCT-TTTA-TTCAC--GTG--GATA-C--A-C--AT-AAACATAA---A-TGTC-T-A-A-GTA-TTTACCAA--CA-C----TG-TGTTTTCCTACG
gi|58421 : -TTCT-TT-A-TCC-C--GTG--GATATT--A-CTCAT-AA-CATAA---
gi|58422 : -A-TCC-C--GTG--GATATC--A-CTCAT-TA-CATCA---ATT-TC-TAA-A-TTA-TT-----A--CA-C----TG-TTGTTTCTGACACCAACT
gi|58423 : AT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-------G-TGTTTTCCTACGCCGGTTG
Alignments
lowQualScore : 2 1 1 1 1 2 0 0 11 11 11 0 0 0 222 1 1 2 2 1 1 1 44444 11 1 3333 2
lowQualScore : . . . . . . . . .. .. .. . . . ... . . . . . . . ..... .. . .... .
lowQualScore : 0 0 0 0 0 8 9 9 33 33 33 9 9 9 999 0 0 0 0 0 0 0 11111 44 1 8888 2
consensus : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
Reference ( family-410 ) : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58380 : TTTATCA-CATA-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTTAT-GA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58381 : TTTATCA-CATT-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATT--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGACTG
gi|58382 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--AATATC--G-CTCAT-AA-CATAA---A-T-TC-T-A-A-TCA-TT-----A--CA-A----TG-TGTTTTCATACGCCGATTG
gi|58383 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--ATG--GATATC--A-CTCCT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CT-T----TG-TGTTTTCCTACGCCAATTG
gi|58384 : TTTATCA-CATG-TTTA-C-TC----T-A-TCC-C--ATG--GATATC--A--TCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CT-T----TG-TGTTTTCCTACGCCAATTG
gi|58385 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--TATATC--A-CTCAT-AC-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TA-TGTTTTCCTACACCGATT
gi|58386 : TTTTTCA-C-TG-TTT--C-TC-T-TT-A-TCC-C--GTGTTAATATC--A-CTCAT-AC-CATAA---A-T-TT-C-A-A-TTA-TT-----A---A-C----TA-TGTTTTCCTACACCGATT
gi|58387 : TTTATTA-CATG-TTTA-C-TCCT-TT-A-TCC-C--TTG--TATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TA-TTTTTTCCTACGCCGATTG
gi|58388 : TTTATCA-CATG-TTTA-C-TCCT-TA-A-TAC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TA-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCAACTG
gi|58389 : TTTATCA-CATG-TGTA-T-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TC-----A--TA-C----TG-TGTTTTCCTACGCCCATT
gi|58390 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-T--CTG--GATATC--A-CTCAT-TA-CAAAA---A-T-TC-T-G-A-TTA-TC-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58391 : TTTATCA-CATG-TTTT-C--CCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C-------TGTTTTCCTATGCCAATTG
gi|58392 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TTC-C--ATT--GATATC--A-CCCAT-GA-CG--A---A-T-TC-T-A-A-TTA-TT-----A--CA-C----CG-TGTTTTCCTACGCCGATTG
gi|58393 : TTGATCA-CATG-CTTA-C-TCCT-TT-A-TCC-C--GTC--AATATC--A-CCCAT-AA-CATAA---A-C-TC-T-A-A-CTA-TC-----A--CA-C----GG-TGTTTTCCTACGCCGAT
gi|58394 : TCTGTCA-CATA-TTTA-C-TCCT-TT-A-TTC-C--GTG--GATATC--A-CTCAC-AA-CAT----------------------------------------TA-TGTTTTCCTACGCCGATTG
gi|58395 : TTTTTCAACATA-TTTA-C-TCCT-TT-A-TCC----GTG--G-TATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----CG-TGTTTTACTACGCCGA
gi|58396 : TTTATCA-CATA-TTTA-C-TCCT-TT-AATCC-C--GTG--ATTATC--A-CTCAT-AA-C-TAA---A-T-TC-T-A-A-TTA--T-----A--CA-C----CG-TG-TTCCTTACTCCGA
gi|58397 : TTTATCA-CATG-CT-A-C-TCCT-TT-A-TCT-T--GTG--GATATC--A-CTCAT-AA-TATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TAGTTTTCTGCCCCAATTG
gi|58398 : TTTATCA-CATG-TTTA-C-TCCT-TTTA-TCC----GTG--GAT--C--A-CTCATCAA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTT--CTACGCCAAT
gi|58399 : TTTATCA-CATG-TTTA-C--CTT-TT-A-TCC-C--GTG--GATATC--A-CTC-T-AA-C-T-A---A-T-TC-T-A-A-TTATTT-----A--CATC----TG-TGTTTTCCTACGCCGA
gi|58400 : TTTATCA-CATGGTTTA-C-TCCT-TT-A-TCC-T--GTG--GATAT---A-CTAAT-GA-CATAA---A-T-TC-T-A-ATTTA-TT-----A---A-C----TG-TGTTTTCTTG-GGTGATTG
gi|58401 : TTTATCA-CATG-TCTA-C-TCCT-TT-A-TCC-C--ATG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-CTA-GTGG---G--TA-T----TG-T-TTTTCC
gi|58402 : TTTATCA-CATG-TTTA-C-TCTT-TT-A-TCC-C--CTG--GATATC---------------------A-T-TC-T-A-A-TT--TT-----A--CA-C----TA-TGTTTTCCTACGCCAATTG
gi|58403 : TTTATCA-CATG-TTTA-C-TCTT-TTTA-TTC-C--GCG--GATATC--A-ATCAT-AA-CATAA---A-T-TC-T-A-A-TTA-T
gi|58404 : TTTATCA-C--G-TTCA-C-TCCT-TT-T-TCC-C--GTG--GATAT--------------------------TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTAAGCTGATTG
gi|58405 : TTTAGCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GACATC--A-CTCAT-AA-CATA
gi|58406 : TTTATCA-CTTG-TTTA-C-TCCT-TT-A-TCC-T--GTG--GATGTC--A-CT-------CATAA---A-T-TC-T-A-A-TTA-
gi|58407 : TTTATCA-CAAG-TTTA-C-TCCT-TT-A-TCC-T--GTG--GATATC--A-CT-A--------------------T-A-A-TTA-TT-----A--CA-C----TA-TGTTTT
gi|58408 : TTTATCA-CATG-CTTA-T-TACT-TT-A-TCC-C--GTG--GATATC--A-CTCAA-AA-CATAA---
gi|58409 : TTTATCA-CATA-TTTA-C-CCCT-TT-A-TCC-A--GTT--GATAAC--A-CTCAT-AT-GATAA---A-T-TTGT-C-A--TA-TC-----ACCCA-CAG--TA-TATATTCCTACACC
gi|58410 : TTTTTCG-CATG-TTTA-A-CTCT-TT-A---C-C--G-G--GATATC--A-CTCAT-AA-CAT-A---A-T-TC-T-A-A-
gi|58411 : TTGATCA-CACA-TTTA-C-CCCT-TT-A-TCC-A--ATT--GATAAA--A-CTCAT-GT-GATAA---G-T-TT-TCATA-TCA-CC-----A--CA-G----TA-TGTATTCCTACGCCG
gi|58412 : TTTATCAACATA-TTTA-C-CCCT-TT-A-TCC-A--GTT--GATATC--ATCTTAT-GT-GATAT---T-T-TT-T-T-C-ATA-TC-----A--CA-T----AGTTGTATTCCTACGCCGCTTG
gi|58413 : TTTATCA-CA-G-TTTA-C-TCTTGTT-A-TCC-CGTGTG--GATA------------------AA---T-T-TCTT-A-A-TTA-TT-----A--CA-C----TGTTGTTTTC
gi|58414 : TTATCA-TATG-ATTA-C-TCCT-TT-A-TCC-C--ATG--GATATC--A-CTCAT-AG-CATAA---A-T-TC-T-A-A-TTA-TT-----C--CA-CTATATA-TGTTTTCCTACGCCGACTG
gi|58415 : TTATCA-CATA-TTTA-C-CCCT-TT-A-TTC-A--GTT--GATGTC--G-CTCAT-AT-AATAATTTG-T-TC-A-T-A-TCA-CC-----A--CA-G----CA-TGTGTCCCTATGCTG
gi|58416 : TATCA-CATG-TTTA-C-TCCT-TT-A-TCC-T--GGG--GATATT--G-CTCAT-AG-CATAAAG-A-T-TT-T-A-A-TTA-TT-----A--CA-C----TA-TGTTTTCTTGTGCCGATTG
gi|58417 : TATCA-CATG-TTTA---TCCT-TT-A-ACC-C--GTG--GATATC--A-CTCAT-AA-TATTT---A-T-TC-G-A-A-----------------------------TTTCCTACGCCGATTG
gi|58418 : TATCT-TATT-TTTA-T-CAC-----A-TCC-C--GTG--GATATCTGA-CTCAT-A---------------T-T-A-A-ACA-TT-----A--CA-C----TG-TGTTTTACTACGCCAATCG
gi|58419 : A-CCTG-TTTA-C-TCCT-TT-A-TCC-G--G-G--AATATC--A-CTCAT-AA-CATAA---A-T-TC-G-A-A-TTA-TT-----A--
gi|58420 : ATA-TTTAACATCCT-TTTA-TTCAC--GTG--GATA-C--A-C--AT-AAACATAA---A-TGTC-T-A-A-GTA-TTTACCAA--CA-C----TG-TGTTTTCCTACG
gi|58421 : -TTCT-TT-A-TCC-C--GTG--GATATT--A-CTCAT-AA-CATAA---
gi|58422 : -A-TCC-C--GTG--GATATC--A-CTCAT-TA-CATCA---ATT-TC-TAA-A-TTA-TT-----A--CA-C----TG-TTGTTTCTGACACCAACT
gi|58423 : AT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-------G-TGTTTTCCTACGCCGGTTG
blockSeqs : A T GT TT TG TTT G C T TACCA CC T TATA T
blockSeqs : A T . . . AG T A . GG . . AG T
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blockSeqCons :
originalCons : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
finalCons : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
Alignments
lowQualScore : 2 1 1 1 1 2 0 0 11 11 11 0 0 0 222 1 1 2 2 1 1 1 44444 11 1 3333 2
lowQualScore : . . . . . . . . .. .. .. . . . ... . . . . . . . ..... .. . .... .
lowQualScore : 0 0 0 0 0 8 9 9 33 33 33 9 9 9 999 0 0 0 0 0 0 0 11111 44 1 8888 2
consensus : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
Reference ( family-410 ) : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58380 : TTTATCA-CATA-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTTAT-GA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58381 : TTTATCA-CATT-TTTA-C-TCCT-TT-A-TCC-C--GTG--GATATT--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCGACTG
gi|58382 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--AATATC--G-CTCAT-AA-CATAA---A-T-TC-T-A-A-TCA-TT-----A--CA-A----TG-TGTTTTCATACGCCGATTG
gi|58383 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--ATG--GATATC--A-CTCCT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CT-T----TG-TGTTTTCCTACGCCAATTG
gi|58384 : TTTATCA-CATG-TTTA-C-TC----T-A-TCC-C--ATG--GATATC--A--TCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CT-T----TG-TGTTTTCCTACGCCAATTG
gi|58385 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--TATATC--A-CTCAT-AC-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TA-TGTTTTCCTACACCGATT
gi|58386 : TTTTTCA-C-TG-TTT--C-TC-T-TT-A-TCC-C--GTGTTAATATC--A-CTCAT-AC-CATAA---A-T-TT-C-A-A-TTA-TT-----A---A-C----TA-TGTTTTCCTACACCGATT
gi|58387 : TTTATTA-CATG-TTTA-C-TCCT-TT-A-TCC-C--TTG--TATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TA-TTTTTTCCTACGCCGATTG
gi|58388 : TTTATCA-CATG-TTTA-C-TCCT-TA-A-TAC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TA-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTACGCCAACTG
gi|58389 : TTTATCA-CATG-TGTA-T-TCCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TC-----A--TA-C----TG-TGTTTTCCTACGCCCATT
gi|58390 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TCC-T--CTG--GATATC--A-CTCAT-TA-CAAAA---A-T-TC-T-G-A-TTA-TC-----A--CA-C----TG-TGTTTTCCTACGCCGATTG
gi|58391 : TTTATCA-CATG-TTTT-C--CCT-TT-A-TCC-C--GTG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C-------TGTTTTCCTATGCCAATTG
gi|58392 : TTTATCA-CATG-TTTA-C-TCCT-TT-A-TTC-C--ATT--GATATC--A-CCCAT-GA-CG--A---A-T-TC-T-A-A-TTA-TT-----A--CA-C----CG-TGTTTTCCTACGCCGATTG
gi|58393 : TTGATCA-CATG-CTTA-C-TCCT-TT-A-TCC-C--GTC--AATATC--A-CCCAT-AA-CATAA---A-C-TC-T-A-A-CTA-TC-----A--CA-C----GG-TGTTTTCCTACGCCGAT
gi|58394 : TCTGTCA-CATA-TTTA-C-TCCT-TT-A-TTC-C--GTG--GATATC--A-CTCAC-AA-CAT----------------------------------------TA-TGTTTTCCTACGCCGATTG
gi|58395 : TTTTTCAACATA-TTTA-C-TCCT-TT-A-TCC----GTG--G-TATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----CG-TGTTTTACTACGCCGA
gi|58396 : TTTATCA-CATA-TTTA-C-TCCT-TT-AATCC-C--GTG--ATTATC--A-CTCAT-AA-C-TAA---A-T-TC-T-A-A-TTA--T-----A--CA-C----CG-TG-TTCCTTACTCCGA
gi|58397 : TTTATCA-CATG-CT-A-C-TCCT-TT-A-TCT-T--GTG--GATATC--A-CTCAT-AA-TATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TAGTTTTCTGCCCCAATTG
gi|58398 : TTTATCA-CATG-TTTA-C-TCCT-TTTA-TCC----GTG--GAT--C--A-CTCATCAA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTT--CTACGCCAAT
gi|58399 : TTTATCA-CATG-TTTA-C--CTT-TT-A-TCC-C--GTG--GATATC--A-CTC-T-AA-C-T-A---A-T-TC-T-A-A-TTATTT-----A--CATC----TG-TGTTTTCCTACGCCGA
gi|58400 : TTTATCA-CATGGTTTA-C-TCCT-TT-A-TCC-T--GTG--GATAT---A-CTAAT-GA-CATAA---A-T-TC-T-A-ATTTA-TT-----A---A-C----TG-TGTTTTCTTG-GGTGATTG
gi|58401 : TTTATCA-CATG-TCTA-C-TCCT-TT-A-TCC-C--ATG--GATATC--A-CTCAT-AA-CATAA---A-T-TC-T-A-A-CTA-GTGG---G--TA-T----TG-T-TTTTCC
gi|58402 : TTTATCA-CATG-TTTA-C-TCTT-TT-A-TCC-C--CTG--GATATC---------------------A-T-TC-T-A-A-TT--TT-----A--CA-C----TA-TGTTTTCCTACGCCAATTG
gi|58403 : TTTATCA-CATG-TTTA-C-TCTT-TTTA-TTC-C--GCG--GATATC--A-ATCAT-AA-CATAA---A-T-TC-T-A-A-TTA-T
gi|58404 : TTTATCA-C--G-TTCA-C-TCCT-TT-T-TCC-C--GTG--GATAT--------------------------TC-T-A-A-TTA-TT-----A--CA-C----TG-TGTTTTCCTAAGCTGATTG
gi|58405 : TTTAGCA-CATG-TTTA-C-TCCT-TT-A-TCC-C--GTG--GACATC--A-CTCAT-AA-CATA
gi|58406 : TTTATCA-CTTG-TTTA-C-TCCT-TT-A-TCC-T--GTG--GATGTC--A-CT-------CATAA---A-T-TC-T-A-A-TTA-
gi|58407 : TTTATCA-CAAG-TTTA-C-TCCT-TT-A-TCC-T--GTG--GATATC--A-CT-A--------------------T-A-A-TTA-TT-----A--CA-C----TA-TGTTTT
gi|58408 : TTTATCA-CATG-CTTA-T-TACT-TT-A-TCC-C--GTG--GATATC--A-CTCAA-AA-CATAA---
gi|58409 : TTTATCA-CATA-TTTA-C-CCCT-TT-A-TCC-A--GTT--GATAAC--A-CTCAT-AT-GATAA---A-T-TTGT-C-A--TA-TC-----ACCCA-CAG--TA-TATATTCCTACACC
gi|58410 : TTTTTCG-CATG-TTTA-A-CTCT-TT-A---C-C--G-G--GATATC--A-CTCAT-AA-CAT-A---A-T-TC-T-A-A-
gi|58411 : TTGATCA-CACA-TTTA-C-CCCT-TT-A-TCC-A--ATT--GATAAA--A-CTCAT-GT-GATAA---G-T-TT-TCATA-TCA-CC-----A--CA-G----TA-TGTATTCCTACGCCG
gi|58412 : TTTATCAACATA-TTTA-C-CCCT-TT-A-TCC-A--GTT--GATATC--ATCTTAT-GT-GATAT---T-T-TT-T-T-C-ATA-TC-----A--CA-T----AGTTGTATTCCTACGCCGCTTG
gi|58413 : TTTATCA-CA-G-TTTA-C-TCTTGTT-A-TCC-CGTGTG--GATA------------------AA---T-T-TCTT-A-A-TTA-TT-----A--CA-C----TGTTGTTTTC
gi|58414 : TTATCA-TATG-ATTA-C-TCCT-TT-A-TCC-C--ATG--GATATC--A-CTCAT-AG-CATAA---A-T-TC-T-A-A-TTA-TT-----C--CA-CTATATA-TGTTTTCCTACGCCGACTG
gi|58415 : TTATCA-CATA-TTTA-C-CCCT-TT-A-TTC-A--GTT--GATGTC--G-CTCAT-AT-AATAATTTG-T-TC-A-T-A-TCA-CC-----A--CA-G----CA-TGTGTCCCTATGCTG
gi|58416 : TATCA-CATG-TTTA-C-TCCT-TT-A-TCC-T--GGG--GATATT--G-CTCAT-AG-CATAAAG-A-T-TT-T-A-A-TTA-TT-----A--CA-C----TA-TGTTTTCTTGTGCCGATTG
gi|58417 : TATCA-CATG-TTTA---TCCT-TT-A-ACC-C--GTG--GATATC--A-CTCAT-AA-TATTT---A-T-TC-G-A-A-----------------------------TTTCCTACGCCGATTG
gi|58418 : TATCT-TATT-TTTA-T-CAC-----A-TCC-C--GTG--GATATCTGA-CTCAT-A---------------T-T-A-A-ACA-TT-----A--CA-C----TG-TGTTTTACTACGCCAATCG
gi|58419 : A-CCTG-TTTA-C-TCCT-TT-A-TCC-G--G-G--AATATC--A-CTCAT-AA-CATAA---A-T-TC-G-A-A-TTA-TT-----A--
gi|58420 : ATA-TTTAACATCCT-TTTA-TTCAC--GTG--GATA-C--A-C--AT-AAACATAA---A-TGTC-T-A-A-GTA-TTTACCAA--CA-C----TG-TGTTTTCCTACG
gi|58421 : -TTCT-TT-A-TCC-C--GTG--GATATT--A-CTCAT-AA-CATAA---
gi|58422 : -A-TCC-C--GTG--GATATC--A-CTCAT-TA-CATCA---ATT-TC-TAA-A-TTA-TT-----A--CA-C----TG-TTGTTTCTGACACCAACT
gi|58423 : AT-AA-CATAA---A-T-TC-T-A-A-TTA-TT-----A--CA-------G-TGTTTTCCTACGCCGGTTG