lowQualScore : 11 1 55 22 1 1 0 0 0 0 11 333 6666 11 0 0 1 0 0 0 0 11 1 11 0 1 2 00 777 0 0
lowQualScore : .. . .. .. . . . . . . .. ... .... .. . . . . . . . .. . .. . . . .. ... . .
lowQualScore : 33 7 88 88 6 5 7 7 7 7 00 222 3333 66 7 7 3 7 7 7 7 66 3 55 7 3 0 99 333 7 7
consensus : TTTT--A-G--T--AT-GCTTT-G-GAG-TT-T--G-A-TCN---GA--GT-C-G-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
Reference ( gi|57306 ) : TTTT--A-G--T--AT-GTTTT-G-GAG-TT-T--G-A-TCT---GA--GT-T-G-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-A-CAT-A-GATAA
gi|57273 : TTTT--A-T--T--AT-GTTTT-G-GAG-TT-T--G-A-TCT---GA--GT-T-G-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57272 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT-T--G-A-TCC---GA--GT-T-G-T-A-T-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57274 : tTTTT--A-G--T--AT-GTTTT-G-GAG-GTAT--G-A-TCT---GA--GT-T-G-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57308 : tTTTT--A-G--T--GT-GCTTT-A-GAA-TT-T--G-A-TCT---GA--GT-T-G-T-A-C-TC-AA--A-AC-AAA-CAT-TG-CTG--T-G-CAT-A-GATAA
gi|57307 : TTTT--A-G--T--AT-GCTTT-A-GAG-CT-T--G-A-TCT---GA--GT-T-G-T-A-C-TC-AA--A-AC-AAA-CAT-GA-CAG--T-G-CAT-A-GATAA
gi|57275 : TTTT--A-G--T--AT-GTGTT-G-GAG-TA-T--G-A-TCT---GG--GT-T-G-T-A-C-TC-AA--T-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57278 : tTTTT--A-G--T--AT-GCTTT-A-GAG-TT-T--A-G-TCT---GA--GT-T-G-T-A-C-CC-AA--A-AC-AAA-CAT-GG-CTG--T-G-TAT-A-GATAA
gi|57279 : tTTTT--A-G--T--AT-CGTTT-G-AAG-TC-T--G-A-TCT---GA--GT-T-G-T-A-C-TC-AA--A-AC-AAA-CAT-GA-CTG--T-G-CAT-A-GATAA
gi|57277 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT----G-A-TCT---GA--AT-T---T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTA--T-G-CAT-A-GATAA
gi|57280 : tTTTT--A-GCAT--AT-GCTTT-G-GAG-TT-T--G-A-TTT---GA--GT-T-G-T-A-C-TC-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAT-A-TATAA
gi|57281 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT-C--G-A-TCT---GA--GT-T---T-A-C-TC-AA--A-ACAAAA-CAT-GT-CTG--T-G-CAT-A-GATA
gi|57286 : tTTTT--A-A--T--GT-GCTTT-G-GAG-TT-T--G-A-TCTT--GA--GT-T-G-T-A-C-TC-AA--A-AC--AA-CATAGG-TTG--T-A-CAT-A-GATAA
gi|57282 : tTTTT--A-G--TT-AT-GCTTT-G-GAG-TT-T--A-A-TCT---GA--GT-T-G-T-A-C-TC-AA--A-AC-AAAGAAT-GGACTG--T-G-CAT-A-TATAA
gi|57284 : tTTTT--A-G--T--AT-CTTTT-G-GAG-TT-T--G-A-TCT---G---GT-T-GTT-A-C-TC-AA--A-AC--AA-CAT-GG-TTG--T-G-GAT-A-GATAA
gi|57283 : tTTTT--A-G--T--AT-CTTTT-G-GAG-TT-T--G-A-TCT---G---GT-T-GTT-A-C-TC-AA--A-AC--AA-CAT-GG-TTG--T-G-GAT-A-GATAA
gi|57285 : tTCTT--A-GA-T--AT-GTTTT-G-GAG-TT-T--GAA-TCT---GAG-GT-T-G-T-A-C-TC-AAAGA-AC-AAA-CAT-GG-TTG--TGG-CAT-A-GATAA
gi|57287 : tTTTT--A-G--T--AT-ACTTT-A-GAG-TT-T--G-A-TCT---GA--GT-T-G-T-A-T-GC-AA--A-AC-AAA-CAT-AA-CTG--T-G-CAT-
gi|57292 : tTTTT--A-G--T--AT--CTTT-A-GAG-TT-T--G-G-CCT---GA--GT-T-G-T-A-C-AC-AA--A-AC-AAA-CAT-GA-CTG--T-G-CAC-T-GACAA
gi|57289 : tTTTT--A-G--T--CT-GCTTC-G-AAG-CT-T--G-C-TCC---GA--GT-C-A-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-A-CA
gi|57293 : tTTTG--A-G--T--AT-GCTT------G-TT-T--G-A-TTT---GC--GT-T-G-T-A-C-TC-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAG-A-GATAA
gi|57290 : tTCTT--A----T--AT-GCTTT-G-GAA-AT-T--G-A-ACT---GA--AC-T-G-T-A-C-TT-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57298 : tTTTT--AAG--C--AC-GGTTT-G-GGG-TT-T--G-A-TCC---GA--GT-T-G-T-A-C-TT-GA--A-AT-AAA-CAT-GT-CTG--T-G-AAT-A-GAT
gi|57311 : TTTT--A-AAAT--AT-GTTTT-G--AG-TT-T--G-AATCT---GA--GT-T-G-T-A-C-T---A--A-AC-AAA-CAT--G-TTG--T-G-CAT-A-GATGA
gi|57309 : TTTT--A-G--T--AT-GCTTT-A-GAG-TT-T--G-G-TCA---GG--GT-T---T-A-T-TC-AA--A-AC-AAT-CAT-GG-CTG--T-G-
gi|57302 : TTTT--ACG--T--AT-GCTTT-G--AG-TT----G-G-TCT---GA--GT-T-G-T-AAC-TC-AAC-A-AC-AAA-CAT-GG-CTGCTT-G-C-T-A-GATA
gi|57303 : tTTTT--A-G--T--GT-GTTTA-G-GTG-TT----G-A-TCT---GA--GT-T-G-TGA-G-TC-AA--ATAC-AAA-CATAGG-TTG--G-G-CAT-A-GATA
gi|57295 : tTTTG--A-G--T--AT-GCTTC-G-GAG-TT-T--G-C-CAA---GA--GT-T-G-T-A-C-TC-AA--A-AT-GAA-CAT-GA-TCG--C-G-CAT-A-GACAA
gi|57288 : tTTTT--A-GG-C--AT-ACTTT-G-GAG-CT-T--G-C-TCA---GA--AT-C-A-T-A-C-TC-AA--A-AC-AAA-CAT-AG-CTG--T-G-CAC-T-GATGA
gi|57310 : tTTTT--A-A--T--AT-GCTTT-G-A----T-T--G-A-TCG---GA--GT-T-A-T-T-C-AC-AA--A-AT-AAA-AAT-GG-TTG--T-G-CAT-A-GATAA
gi|57276 : TTTT--A-GC-T--ATTGTTTTTG-AAG-TA-T--G-A-TCTTGAGA--AT-T-G-T-A-C-TC-AA--A-A----A-CAT-GG-CTG--T-G-CAT-ATGATA
gi|57313 : tTTTT--A-G--T--AT-GTTTT-G-GAG--T-T--G-A-TCC---GA--GT-T-T-T-----TC-AA--A----AAA-CAT-G---TG--T-G-CAT-A-G-TAA
gi|57296 : TTTTCGA-G--T--TT-GCTTT-G-GAG-CT-T--G-C-TCA---GA--GT-C-G-T-A-C-TC-AT--T-AA-AAA-TAT-GA-CTG--C-G-CAT-A-GATA
gi|57300 : tTTTT--A-GGGT--AT-TCTTT-G-GAG-CT-T--G-C-TCA---GC--AT-C-A-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--
gi|57305 : tTTTT--A----T--ATAGTTT----GAG-TT-T--G-A-TCT---GA--GTGT-G-T-A-CTTC-CA--A-AC-AAA-CAT-GGTTTG--T-GCCAT-A--ATAA
gi|57312 : tTTTT--A-G--TCAAT-GCTTC-GCGAG-TT-TTTG-C-TCA---GA--GA-T-G-T-T-C-TC-AA--A--C-AAA-CAT-GG-CTG--TGG-CAT-A-GATGA
gi|57299 : TTTG--A-G--T--AT-ACTCT-G-GGG-CT-C--G-C-TCA---GA--GA-C-G-T-A-C-TC-AA--T-AA-AAA-CAT-GG-CTG--T-G-CGT-A-GA
gi|57301 : tTTTT--A-G--T--AA-GCTTT-A-GAG-CT-T--G-C-TCA---GA--GT-A-G-T-A-C-GC-AA--C-AC-AGA-CGT-GA-CTA--T-G-GAT-A-GACA
gi|57304 : tTTTG--G-G--T--AT-CCTTC-G-GAG-CT-T------TCT---CATTAT-C-G-T-A-C-AC-AA--ACAG-AAA-CAT-GG-CTG--T-T-CAT-A-GATAA
gi|57315 : tTTT--A-G--T--AT-ACTTT-A-GAG--T-T--G-A-TCT---GA--GT-T---T-A---GC-AA--A-AC--AA-CAT-AA-CTG--T-G-AAT-A-GATAA
gi|57314 : TTG--A-G--T--AT-GCTTA-G-GAG-CT-C--G-A-TCA---GA--GT-C-G-T-A-C-TC-AA--T-AG-AAA-CAC-GA-CT
gi|57297 : TT--A-G--TT-AT-GCTTT-G-GAA-TT-T--G---TCT---GA--GT-TTG-T-A-C-TC-AA--A-AC-AAA--AT-GG-TTG--T-G-CAT-A-GATA
gi|57316 : ttgT--G-G--T--CT-GCTTT-G-GAG-TT-T--G-A-TCT---GA--GT-T-G-T-A-C-TC-AA--A-AT-AAA-CAG-GG-CTG--T-G-CAT-A-GATAA
gi|57317 : --A-G--T--AC-ACTTC-G-GGG-CT-T--G-C-TCA---GA--GT-T-G-T-A-C-TC-AA--A-G-------AT-GG-CTG--T-G-AAT-A-GAT
gi|57291 : -G--T--AT-GCTTT-G-GAG-TT-T--T-A-TAT---GA--GT-T-G-C-A-C-TTTAA--A-AC-AAA-CGT-GG-CTG--T-G-CAT-A-GATAA
gi|57318 : tttttagtacat-G--T--AT-GCTTT-G-GAG-CT-T--A-A-TCA---GA--GT-T-A-T-A-C-TC-AA--T-AA-AAA-CAT-GA-CTG--C-G-CAT-A-AATA
gi|57319 : -G--T--AT-GATTT-G-GAG-CT-T--G-C-TC-----A--GT-C-A-T-A-C-TC-AA--T-A--AAA-CAT-TG-CTG--G-G-CAT-A-GATAA
gi|57320 : -G--T--AT-GCTTT-G-GAG-CT-T--A-C-ACA---GA--GT-T-G-T-A-C-T------A-AG-AAA-CAT-GG-TTG--C-C-TAT-A-GACAA
gi|57321 : --T--AT-GCTTC-A-GAG-CT-T--G-C-TCA---GA--GT-G-G-T-A-C-TC-AA--A-AC-AAT-CTT-GG-CTG--T-G-TAT-A-GACA
gi|57322 : --T--AT-GCTTT-G-GAG-CT-T--A-C-TCA---TA--GT-C-G-T-A-C-T--AA--A-A--AAA--AT-GG-CTG--C-G-CAT-G-AATAA
gi|57324 : -GCTTT-G-GAG-CT-T--G-C-TC-----A--GT-C-A-C-A-C-TC-AA--T-AA-AAA-CAT-GG-CTG--C-A-CAT-A-GATAA
gi|57323 : -GTTTT-G-GAG-T-----G-C-TCG---GA--TT-C-A-T-A-C-TC-AA--A-AT-AAA-CAC-GG-CTG--T-G-CAT-A-AATA
gi|57325 : TTTT-G-GAG-CT-T--T-C-TCA---GA--AC-C-G-T-A-C-TC-AA--A-AC-GAA-CAC-GG-CTG--T-G-CAA-A-GATAA
gi|57326 : TTTT-G-GAGCTT-T--C-A-TCA---GA--AC-C-G-T-A-C-TC-AA--A-AC--AA-CAC-GG-CTG--T-G-CACAA-GATAA
gi|57327 : TTTT-G-GAG-CT-T--G-C-TCA---GA--GC-C-G-T-T-C-TC-AA--T-ATAAAA-CAT-GG-CTG--C-G-CAT-T-GACAA
gi|57328 : TT-G-AAG-CT-T--G-C-TCAA--GA--GC-T-G-T-A-C-TC-AA--T-A--AAA-CAT-GGTCCG------CAT-A-GATAA
gi|57329 : G-CT-T--G-C-TCA---GA--CT-C-G-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--C-A-CAT-A-GACAA
gi|57330 : G-CT-T--G-C-TCA---GA--CT-C-G-C-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--C-A-CAT-A-GACAA
gi|57332 : ---GA--GT-T-G-T-A-C-TC-AA--A-AT-AAA-CAC-GG-CTG--T-G-CAT-A-GATA
gi|57331 : a--GC-T-G-G-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAC-A-GATAA
gi|57294 : tcagt-G-T-A-C-TC-AA--A-AC--AA-CAC-GG-CTG--T-G-CAC-A-GATAA
Alignments
lowQualScore : 11 1 55 22 0 0 1 0 0 00 333 4444 0 1 22 1 0 0 0 0 11 1 0 1 1 1 00 1 0 0 0
lowQualScore : .. . .. .. . . . . . .. ... .... . . .. . . . . . .. . . . . . .. . . . .
lowQualScore : 22 7 77 77 8 7 4 7 7 99 666 8888 7 3 55 3 7 7 7 7 66 3 7 3 3 3 99 4 7 7 7
consensus : TTTT--A-G--T--AT-GCTTT-G-GAG-TT-T--G-A-TCN---GA-G-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
Reference ( family-328 ) : TTTT--A-G--T--AT-GCTTT-G-GAG-TT-T--G-A-TCN---GA-G-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57272 : TTTT--A-G--T--AT-GTTTT-G-GAG-TT-T--G-A-TCC---GA-G-T-TG-T-A-T-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57273 : tTTTT--A-T--T--AT-GTTTT-G-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57274 : tTTTT--A-G--T--AT-GTTTT-G-GAG-GTAT--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57275 : tTTTT--A-G--T--AT-GTGTT-G-GAG-TA-T--G-A-TCT---GG-G-T-TG-T-A-C-TC-AA--T-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57276 : tTTTT--A-GC-T--ATTGTTTTTG-AAG-TA-T--G-A-TCTTGAGA-A-T-TG-T-A-C-TC-AA--A-A----A-CAT-GG-CTG--T-G-CAT-ATGATA
gi|57277 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT----G-A-TCT---GA-A-T-T--T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTA--T-G-CAT-A-GATAA
gi|57278 : tTTTT--A-G--T--AT-GCTTT-A-GAG-TT-T--A-G-TCT---GA-G-T-TG-T-A-C-CC-AA--A-AC-AAA-CAT-GG-CTG--T-G-TAT-A-GATAA
gi|57279 : tTTTT--A-G--T--AT-CGTTT-G-AAG-TC-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GA-CTG--T-G-CAT-A-GATAA
gi|57280 : tTTTT--A-GCAT--AT-GCTTT-G-GAG-TT-T--G-A-TTT---GA-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAT-A-TATAA
gi|57281 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT-C--G-A-TCT---GA-G-T-T--T-A-C-TC-AA--A-AC-AAAACAT-GT-CTG--T-G-CAT-A-GATA
gi|57282 : tTTTT--A-G--TT-AT-GCTTT-G-GAG-TT-T--A-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAAGAAT-GGACTG--T-G-CAT-A-TATAA
gi|57283 : tTTTT--A-G--T--AT-CTTTT-G-GAG-TT-T--G-A-TCT---G--G-T-TGTT-A-C-TC-AA--A-AC--AA-CAT-GG-TTG--T-G-GAT-A-GATAA
gi|57284 : tTTTT--A-G--T--AT-CTTTT-G-GAG-TT-T--G-A-TCT---G--G-T-TGTT-A-C-TC-AA--A-AC--AA-CAT-GG-TTG--T-G-GAT-A-GATAA
gi|57285 : tTCTT--A-GA-T--AT-GTTTT-G-GAG-TT-T--GAA-TCT---GAGG-T-TG-T-A-C-TC-AAAGA-AC-AAA-CAT-GG-TTG--TGG-CAT-A-GATAA
gi|57286 : tTTTT--A-A--T--GT-GCTTT-G-GAG-TT-T--G-A-TCTT--GA-G-T-TG-T-A-C-TC-AA--A-AC--AA-CATAGG-TTG--T-A-CAT-A-GATAA
gi|57287 : tTTTT--A-G--T--AT-ACTTT-A-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-T-GC-AA--A-AC-AAA-CAT-AA-CTG--T-G-CAT-
gi|57288 : tTTTT--A-GG-C--AT-ACTTT-G-GAG-CT-T--G-C-TCA---GA-A-T-CA-T-A-C-TC-AA--A-AC-AAA-CAT-AG-CTG--T-G-CAC-T-GATGA
gi|57289 : tTTTT--A-G--T--CT-GCTTC-G-AAG-CT-T--G-C-TCC---GA-G-T-CA-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-A-CA
gi|57290 : tTCTT--A----T--AT-GCTTT-G-GAA-AT-T--G-A-ACT---GA-A-C-TG-T-A-C-TT-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57291 : t-G--T--AT-GCTTT-G-GAG-TT-T--T-A-TAT---GA-G-T-TG-C-A-C-TTTAA--A-AC-AAA-CGT-GG-CTG--T-G-CAT-A-GATAA
gi|57292 : tttttagtacatTTTT--A-G--T--AT--CTTT-A-GAG-TT-T--G-G-CCT---GA-G-T-TG-T-A-C-AC-AA--A-AC-AAA-CAT-GA-CTG--T-G-CAC-T-GACAA
gi|57293 : tTTTG--A-G--T--AT-GCTT------G-TT-T--G-A-TTT---GC-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAG-A-GATAA
gi|57294 : tTTT-GTGAG-CT-T--T---TCA---GA-AAC-CG-T-A-C-TC-AA--A-AC-AA--CAC-GG-CTG--T-G-CAC-A-GATAA
gi|57295 : tttttgcgaacgaTTTG--A-G--T--AT-GCTTC-G-GAG-TT-T--G-C-CAA---GA-G-T-TG-T-A-C-TC-AA--A-AT-GAA-CAT-GA-TCG--C-G-CAT-A-GACAA
gi|57296 : tTTTTCGA-G--T--TT-GCTTT-G-GAG-CT-T--G-C-TCA---GA-G-T-CG-T-A-C-TC-AT--T-AA-AAA-TAT-GA-CTG--C-G-CAT-A-GATA
gi|57297 : tTT--A-G--TT-AT-GCTTT-G-GAA-TT-T--G---TCT---GA-GTT-TG-T-A-C-TC-AA--A-AC-AAA--AT-GG-TTG--T-G-CAT-A-GATA
gi|57298 : ttgTTTT--AAG--C--AC-GGTTT-G-GGG-TT-T--G-A-TCC---GA-G-T-TG-T-A-C-TT-GA--A-AT-AAA-CAT-GT-CTG--T-G-AAT-A-GAT
gi|57299 : TTTG--A-G--T--AT-ACTCT-G-GGG-CT-C--G-C-TCA---GA-G-A-CG-T-A-C-TC-AA--T-AA-AAA-CAT-GG-CTG--T-G-CGT-A-GA
gi|57300 : tTTTT--A-GGGT--AT-TCTTT-G-GAG-CT-T--G-C-TCA---GC-A-T-CA-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--
gi|57301 : tTTTT--A-G--T--AA-GCTTT-A-GAG-CT-T--G-C-TCA---GA-G-T-AG-T-A-C-GC-AA--C-AC-AGA-CGT-GA-CTA--T-G-GAT-A-GACA
gi|57302 : tTTTT--ACG--T--AT-GCTTT-G--AG-TT----G-G-TCT---GA-G-T-TG-T-AAC-TC-AAC-A-AC-AAA-CAT-GG-CTGCTT-G-C-T-A-GATA
gi|57303 : tTTTT--A-G--T--GT-GTTTA-G-GTG-TT----G-A-TCT---GA-G-T-TG-TGA-G-TC-AA--ATAC-AAA-CATAGG-TTG--G-G-CAT-A-GATA
gi|57304 : tTTTG--G-G--T--AT-CCTTC-G-GAG-CT-T--T-C-TCA---TT-A-T-CG-T-A-C-AC-AA--ACAG-AAA-CAT-GG-CTG--T-T-CAT-A-GATAA
gi|57305 : tTTTT--A----T--AT-AGTTT-G--AG-TT-T--G-A-TCT---GA-G-TGTG-T-A-CTTC-CA--A-AC-AAA-CAT-GGTTTG--T-GCCAT-A--ATAA
gi|57306 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-A-CAT-A-GATAA
gi|57307 : TTTT--A-G--T--AT-GCTTT-A-GAG-CT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GA-CAG--T-G-CAT-A-GATAA
gi|57308 : TTTT--A-G--T--GT-GCTTT-A-GAA-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-TG-CTG--T-G-CAT-A-GATAA
gi|57309 : TTTT--A-G--T--AT-GCTTT-A-GAG-TT-T--G-G-TCA---GG-G-T-T--T-A-T-TC-AA--A-AC-AAT-CAT-GG-CTG--T-G-C
gi|57310 : TTTT--A-A--T--AT-GCTTT-G-A----T-T--G-A-TCG---GA-G-T-TA-T-T-C-AC-AA--A-AT-AAA-AAT-GG-TTG--T-G-CAT-A-GATAA
gi|57311 : TTTT--A-AAAT--AT-GTTTT-G--AG-TT-T--G-AATCT---GA-G-T-TG-T-A-C-T---A--A-AC-AAA-CAT--G-TTG--T-G-CAT-A-GATGA
gi|57312 : TTTT--A-G--TCAAT-GCTTC-GCGAG-TT-TTTG-C-TCA---GA-G-A-TG-T-T-C-TC-AA--A--C-AAA-CAT-GG-CTG--TGG-CAT-A-GATGA
gi|57313 : TTTT--A-G--T--AT-GTTTT-G-GAG--T-T--G-A-TCC---GA-G-T-TT-T-----TC-AA--A----AAA-CAT-G---TG--T-G-CAT-A-G-TAA
gi|57314 : TTG--A-G--T--AT-GCTTA-G-GAG-CT-C--G-A-TCA---GA-G-T-CG-T-A-C-TC-AA--T-AG-AAA-CAC-GA-CT
gi|57315 : TTT--A-G--T--AT-ACTTT-A-GAG--T-T--G-A-TCT---GA-G-T-T--T-A---GC-AA--A-AC--AA-CAT-AA-CTG--T-G-AAT-A-GATAA
gi|57316 : T--G-G--T--CT-GCTTT-G-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAG-GG-CTG--T-G-CAT-A-GATAA
gi|57317 : --A-G--T--AC-ACTTC-G-GGG-CT-T--G-C-TCA---GA-G-T-TG-T-A-C-TC-AA--A-G-------AT-GG-CTG--T-G-AAT-A-GAT
gi|57318 : -G--T--AT-GCTTT-G-GAG-CT-T--A-A-TCA---GA-G-T-TA-T-A-C-TC-AA--T-AA-AAA-CAT-GA-CTG--C-G-CAT-A-AATA
gi|57319 : -G--T--AT-GATTT-G-GAG-CT-T--G-C-TC-----A-G-T-CA-T-A-C-TC-AA--T-A--AAA-CAT-TG-CTG--G-G-CAT-A-GATAA
gi|57320 : -G--T--AT-GCTTT-G-GAG-CT-T--A-C-ACA---GA-G-T-TG-T-A-C-T------A-AG-AAA-CAT-GG-TTG--C-C-TAT-A-GACAA
gi|57321 : --T--AT-GCTTC-A-GAG-CT-T--G-C-TCA---GA-G-T-GG-T-A-C-TC-AA--A-AC-AAT-CTT-GG-CTG--T-G-TAT-A-GACA
gi|57322 : --T--AT-GCTTT-G-GAG-CT-T--A-C-TCA---TA-G-T-CG-T-A-C-T--AA--A-A--AAA--AT-GG-CTG--C-G-CAT-G-AATAA
gi|57323 : -GTTTT-G-GAG-T-----G-C-TCG---GA-T-T-CA-T-A-C-TC-AA--A-AT-AAA-CAC-GG-CTG--T-G-CAT-A-AATA
gi|57324 : -GCTTT-G-GAG-CT-T--G-C-TC-----A-G-T-CA-C-A-C-TC-AA--T-AA-AAA-CAT-GG-CTG--C-A-CAT-A-GATAA
gi|57325 : TTT-G-GAG-CT-T--T-C-TCA---GA-A-C-CG-T-A-C-TC-AA--A-AC-GAA-CAC-GG-CTG--T-G-CAA-A-GATAA
gi|57326 : tTTT-G-GAGCTT-T--C-A-TCA---GA-A-C-CG-T-A-C-TC-AA--A-AC--AA-CAC-GG-CTG--T-G-CACAA-GATAA
gi|57327 : tTTT-G-GAG-CT-T--G-C-TCA---GA-G-C-CG-T-T-C-TC-AA--T-ATAAAA-CAT-GG-CTG--C-G-CAT-T-GACAA
gi|57328 : tTT-G-AAG-CT-T--G-C-TCAA--GA-G-C-TG-T-A-C-TC-AA--T-A--AAA-CAT-GG--TC--C-G-CAT-A-GATAA
gi|57329 : G-CT-T--G-C-TCA---GA-C-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--C-A-CAT-A-GACAA
gi|57330 : G-CT-T--G-C-TCA---GA-C-T-CG-C-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--C-A-CAT-A-GACAA
gi|57331 : -TCA---GT-G-C-TG-G-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAC-A-GATAA
gi|57332 : ---GA-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAC-GG-CTG--T-G-CAT-A-GATA
Alignments
lowQualScore : 11 1 55 22 0 0 1 0 0 00 333 4444 0 1 22 1 0 0 0 0 11 1 0 1 1 1 00 1 0 0 0
lowQualScore : .. . .. .. . . . . . .. ... .... . . .. . . . . . .. . . . . . .. . . . .
lowQualScore : 22 7 77 77 8 7 4 7 7 99 666 8888 7 3 55 3 7 7 7 7 66 3 7 3 3 3 99 4 7 7 7
consensus : TTTT--A-G--T--AT-GCTTT-G-GAG-TT-T--G-A-TCN---GA-G-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
Reference ( family-328 ) : TTTT--A-G--T--AT-GCTTT-G-GAG-TT-T--G-A-TCN---GA-G-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57272 : TTTT--A-G--T--AT-GTTTT-G-GAG-TT-T--G-A-TCC---GA-G-T-TG-T-A-T-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57273 : tTTTT--A-T--T--AT-GTTTT-G-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57274 : tTTTT--A-G--T--AT-GTTTT-G-GAG-GTAT--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57275 : tTTTT--A-G--T--AT-GTGTT-G-GAG-TA-T--G-A-TCT---GG-G-T-TG-T-A-C-TC-AA--T-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57276 : tTTTT--A-GC-T--ATTGTTTTTG-AAG-TA-T--G-A-TCTTGAGA-A-T-TG-T-A-C-TC-AA--A-A----A-CAT-GG-CTG--T-G-CAT-ATGATA
gi|57277 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT----G-A-TCT---GA-A-T-T--T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTA--T-G-CAT-A-GATAA
gi|57278 : tTTTT--A-G--T--AT-GCTTT-A-GAG-TT-T--A-G-TCT---GA-G-T-TG-T-A-C-CC-AA--A-AC-AAA-CAT-GG-CTG--T-G-TAT-A-GATAA
gi|57279 : tTTTT--A-G--T--AT-CGTTT-G-AAG-TC-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GA-CTG--T-G-CAT-A-GATAA
gi|57280 : tTTTT--A-GCAT--AT-GCTTT-G-GAG-TT-T--G-A-TTT---GA-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAT-A-TATAA
gi|57281 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT-C--G-A-TCT---GA-G-T-T--T-A-C-TC-AA--A-AC-AAAACAT-GT-CTG--T-G-CAT-A-GATA
gi|57282 : tTTTT--A-G--TT-AT-GCTTT-G-GAG-TT-T--A-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAAGAAT-GGACTG--T-G-CAT-A-TATAA
gi|57283 : tTTTT--A-G--T--AT-CTTTT-G-GAG-TT-T--G-A-TCT---G--G-T-TGTT-A-C-TC-AA--A-AC--AA-CAT-GG-TTG--T-G-GAT-A-GATAA
gi|57284 : tTTTT--A-G--T--AT-CTTTT-G-GAG-TT-T--G-A-TCT---G--G-T-TGTT-A-C-TC-AA--A-AC--AA-CAT-GG-TTG--T-G-GAT-A-GATAA
gi|57285 : tTCTT--A-GA-T--AT-GTTTT-G-GAG-TT-T--GAA-TCT---GAGG-T-TG-T-A-C-TC-AAAGA-AC-AAA-CAT-GG-TTG--TGG-CAT-A-GATAA
gi|57286 : tTTTT--A-A--T--GT-GCTTT-G-GAG-TT-T--G-A-TCTT--GA-G-T-TG-T-A-C-TC-AA--A-AC--AA-CATAGG-TTG--T-A-CAT-A-GATAA
gi|57287 : tTTTT--A-G--T--AT-ACTTT-A-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-T-GC-AA--A-AC-AAA-CAT-AA-CTG--T-G-CAT-
gi|57288 : tTTTT--A-GG-C--AT-ACTTT-G-GAG-CT-T--G-C-TCA---GA-A-T-CA-T-A-C-TC-AA--A-AC-AAA-CAT-AG-CTG--T-G-CAC-T-GATGA
gi|57289 : tTTTT--A-G--T--CT-GCTTC-G-AAG-CT-T--G-C-TCC---GA-G-T-CA-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-A-CA
gi|57290 : tTCTT--A----T--AT-GCTTT-G-GAA-AT-T--G-A-ACT---GA-A-C-TG-T-A-C-TT-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57291 : t-G--T--AT-GCTTT-G-GAG-TT-T--T-A-TAT---GA-G-T-TG-C-A-C-TTTAA--A-AC-AAA-CGT-GG-CTG--T-G-CAT-A-GATAA
gi|57292 : tttttagtacatTTTT--A-G--T--AT--CTTT-A-GAG-TT-T--G-G-CCT---GA-G-T-TG-T-A-C-AC-AA--A-AC-AAA-CAT-GA-CTG--T-G-CAC-T-GACAA
gi|57293 : tTTTG--A-G--T--AT-GCTT------G-TT-T--G-A-TTT---GC-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAG-A-GATAA
gi|57294 : tTTT-GTGAG-CT-T--T---TCA---GA-AAC-CG-T-A-C-TC-AA--A-AC-AA--CAC-GG-CTG--T-G-CAC-A-GATAA
gi|57295 : tttttgcgaacgaTTTG--A-G--T--AT-GCTTC-G-GAG-TT-T--G-C-CAA---GA-G-T-TG-T-A-C-TC-AA--A-AT-GAA-CAT-GA-TCG--C-G-CAT-A-GACAA
gi|57296 : tTTTTCGA-G--T--TT-GCTTT-G-GAG-CT-T--G-C-TCA---GA-G-T-CG-T-A-C-TC-AT--T-AA-AAA-TAT-GA-CTG--C-G-CAT-A-GATA
gi|57297 : tTT--A-G--TT-AT-GCTTT-G-GAA-TT-T--G---TCT---GA-GTT-TG-T-A-C-TC-AA--A-AC-AAA--AT-GG-TTG--T-G-CAT-A-GATA
gi|57298 : ttgTTTT--AAG--C--AC-GGTTT-G-GGG-TT-T--G-A-TCC---GA-G-T-TG-T-A-C-TT-GA--A-AT-AAA-CAT-GT-CTG--T-G-AAT-A-GAT
gi|57299 : TTTG--A-G--T--AT-ACTCT-G-GGG-CT-C--G-C-TCA---GA-G-A-CG-T-A-C-TC-AA--T-AA-AAA-CAT-GG-CTG--T-G-CGT-A-GA
gi|57300 : tTTTT--A-GGGT--AT-TCTTT-G-GAG-CT-T--G-C-TCA---GC-A-T-CA-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--
gi|57301 : tTTTT--A-G--T--AA-GCTTT-A-GAG-CT-T--G-C-TCA---GA-G-T-AG-T-A-C-GC-AA--C-AC-AGA-CGT-GA-CTA--T-G-GAT-A-GACA
gi|57302 : tTTTT--ACG--T--AT-GCTTT-G--AG-TT----G-G-TCT---GA-G-T-TG-T-AAC-TC-AAC-A-AC-AAA-CAT-GG-CTGCTT-G-C-T-A-GATA
gi|57303 : tTTTT--A-G--T--GT-GTTTA-G-GTG-TT----G-A-TCT---GA-G-T-TG-TGA-G-TC-AA--ATAC-AAA-CATAGG-TTG--G-G-CAT-A-GATA
gi|57304 : tTTTG--G-G--T--AT-CCTTC-G-GAG-CT-T--T-C-TCA---TT-A-T-CG-T-A-C-AC-AA--ACAG-AAA-CAT-GG-CTG--T-T-CAT-A-GATAA
gi|57305 : tTTTT--A----T--AT-AGTTT-G--AG-TT-T--G-A-TCT---GA-G-TGTG-T-A-CTTC-CA--A-AC-AAA-CAT-GGTTTG--T-GCCAT-A--ATAA
gi|57306 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-A-CAT-A-GATAA
gi|57307 : TTTT--A-G--T--AT-GCTTT-A-GAG-CT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GA-CAG--T-G-CAT-A-GATAA
gi|57308 : TTTT--A-G--T--GT-GCTTT-A-GAA-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-TG-CTG--T-G-CAT-A-GATAA
gi|57309 : TTTT--A-G--T--AT-GCTTT-A-GAG-TT-T--G-G-TCA---GG-G-T-T--T-A-T-TC-AA--A-AC-AAT-CAT-GG-CTG--T-G-C
gi|57310 : TTTT--A-A--T--AT-GCTTT-G-A----T-T--G-A-TCG---GA-G-T-TA-T-T-C-AC-AA--A-AT-AAA-AAT-GG-TTG--T-G-CAT-A-GATAA
gi|57311 : TTTT--A-AAAT--AT-GTTTT-G--AG-TT-T--G-AATCT---GA-G-T-TG-T-A-C-T---A--A-AC-AAA-CAT--G-TTG--T-G-CAT-A-GATGA
gi|57312 : TTTT--A-G--TCAAT-GCTTC-GCGAG-TT-TTTG-C-TCA---GA-G-A-TG-T-T-C-TC-AA--A--C-AAA-CAT-GG-CTG--TGG-CAT-A-GATGA
gi|57313 : TTTT--A-G--T--AT-GTTTT-G-GAG--T-T--G-A-TCC---GA-G-T-TT-T-----TC-AA--A----AAA-CAT-G---TG--T-G-CAT-A-G-TAA
gi|57314 : TTG--A-G--T--AT-GCTTA-G-GAG-CT-C--G-A-TCA---GA-G-T-CG-T-A-C-TC-AA--T-AG-AAA-CAC-GA-CT
gi|57315 : TTT--A-G--T--AT-ACTTT-A-GAG--T-T--G-A-TCT---GA-G-T-T--T-A---GC-AA--A-AC--AA-CAT-AA-CTG--T-G-AAT-A-GATAA
gi|57316 : T--G-G--T--CT-GCTTT-G-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAG-GG-CTG--T-G-CAT-A-GATAA
gi|57317 : --A-G--T--AC-ACTTC-G-GGG-CT-T--G-C-TCA---GA-G-T-TG-T-A-C-TC-AA--A-G-------AT-GG-CTG--T-G-AAT-A-GAT
gi|57318 : -G--T--AT-GCTTT-G-GAG-CT-T--A-A-TCA---GA-G-T-TA-T-A-C-TC-AA--T-AA-AAA-CAT-GA-CTG--C-G-CAT-A-AATA
gi|57319 : -G--T--AT-GATTT-G-GAG-CT-T--G-C-TC-----A-G-T-CA-T-A-C-TC-AA--T-A--AAA-CAT-TG-CTG--G-G-CAT-A-GATAA
gi|57320 : -G--T--AT-GCTTT-G-GAG-CT-T--A-C-ACA---GA-G-T-TG-T-A-C-T------A-AG-AAA-CAT-GG-TTG--C-C-TAT-A-GACAA
gi|57321 : --T--AT-GCTTC-A-GAG-CT-T--G-C-TCA---GA-G-T-GG-T-A-C-TC-AA--A-AC-AAT-CTT-GG-CTG--T-G-TAT-A-GACA
gi|57322 : --T--AT-GCTTT-G-GAG-CT-T--A-C-TCA---TA-G-T-CG-T-A-C-T--AA--A-A--AAA--AT-GG-CTG--C-G-CAT-G-AATAA
gi|57323 : -GTTTT-G-GAG-T-----G-C-TCG---GA-T-T-CA-T-A-C-TC-AA--A-AT-AAA-CAC-GG-CTG--T-G-CAT-A-AATA
gi|57324 : -GCTTT-G-GAG-CT-T--G-C-TC-----A-G-T-CA-C-A-C-TC-AA--T-AA-AAA-CAT-GG-CTG--C-A-CAT-A-GATAA
gi|57325 : TTT-G-GAG-CT-T--T-C-TCA---GA-A-C-CG-T-A-C-TC-AA--A-AC-GAA-CAC-GG-CTG--T-G-CAA-A-GATAA
gi|57326 : tTTT-G-GAGCTT-T--C-A-TCA---GA-A-C-CG-T-A-C-TC-AA--A-AC--AA-CAC-GG-CTG--T-G-CACAA-GATAA
gi|57327 : tTTT-G-GAG-CT-T--G-C-TCA---GA-G-C-CG-T-T-C-TC-AA--T-ATAAAA-CAT-GG-CTG--C-G-CAT-T-GACAA
gi|57328 : tTT-G-AAG-CT-T--G-C-TCAA--GA-G-C-TG-T-A-C-TC-AA--T-A--AAA-CAT-GG--TC--C-G-CAT-A-GATAA
gi|57329 : G-CT-T--G-C-TCA---GA-C-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--C-A-CAT-A-GACAA
gi|57330 : G-CT-T--G-C-TCA---GA-C-T-CG-C-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--C-A-CAT-A-GACAA
gi|57331 : -TCA---GT-G-C-TG-G-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAC-A-GATAA
gi|57332 : ---GA-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAC-GG-CTG--T-G-CAT-A-GATA
blockSeqs : CG A CA CA T AA TTGA A GT T AG T A A A G
blockSeqs : . C GG T C AA TT T T T C C G A T G
blockSeqs : . . AA T . A AA . T . . . . . . .
blockSeqs : . . C . . A T . T . . . . . . .
blockSeqs : . . A . . A T . T . . . . . . .
blockSeqs : . . G . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . G T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . C A . C . . . . . . .
blockSeqs : . . . . . C C . C . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . G T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . C A . C . . . . . . .
blockSeqs : . . . . . C A . T . . . . . . .
blockSeqs : . . . . . A A . C . . . . . . .
blockSeqs : . . . . . C T . T . . . . . . .
blockSeqs : . . . . . C C . T . . . . . . .
blockSeqs : . . . . . C A . C . . . . . . .
blockSeqs : . . . . . G A . C . . . . . . .
blockSeqs : . . . . . A A . A . . . . . . .
blockSeqs : . . . . . C T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A A . C . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . G T . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . C A . T . . . . . . .
blockSeqs : . . . . . A G . T . . . . . . .
blockSeqs : . . . . . A T . T . . . . . . .
blockSeqs : . . . . . A A . T . . . . . . .
blockSeqs : . . . . . A C . C . . . . . . .
blockSeqs : . . . . . C A . T . . . . . . .
blockSeqs : . . . . A T . T . . . . . . .
blockSeqs : . . . . C T . T . . . . . . .
blockSeqs : . . . . C A . T . . . . . . .
blockSeqs : . . . . C A . C . . . . . . .
blockSeqs : . . . C A . T . . . . . . .
blockSeqs : . . . C A . G . . . . . . .
blockSeqs : . C A . C . . . . . . .
blockSeqs : . C G . C . . . . . . .
blockSeqs : . A A . C . . . . . . .
blockSeqs : . C A . C . . . . . . .
blockSeqs : . C A . C . . . . . . .
blockSeqs : . C A . C . . . . . . .
blockSeqs : . C A . T . . . . . . .
blockSeqs : . A . C . . . . . . .
blockSeqs : . . . C . . . . . . .
blockSeqs : . . T . . . . . .
blockSeqs : . T . . . . . .
blockSeqCons :
originalCons : TTTT--A-G--T--AT-GCTTT-G-GAG-TT-T--G-A-TCN---GA-G-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
finalCons : TTTT--A-G--T--AT-GCTTT-G-GAG-TT-T--G-A-TCN---GA-G-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
Alignments
lowQualScore : 11 1 55 22 0 0 1 0 0 00 333 4444 0 1 22 1 0 0 0 0 11 1 0 1 1 1 00 1 0 0 0
lowQualScore : .. . .. .. . . . . . .. ... .... . . .. . . . . . .. . . . . . .. . . . .
lowQualScore : 22 7 77 77 8 7 4 7 7 99 666 8888 7 3 55 3 7 7 7 7 66 3 7 3 3 3 99 4 7 7 7
consensus : TTTT--A-G--T--AT-GCTTT-G-GAG-TT-T--G-A-TCN---GA-G-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
Reference ( family-328 ) : TTTT--A-G--T--AT-GCTTT-G-GAG-TT-T--G-A-TCN---GA-G-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57272 : TTTT--A-G--T--AT-GTTTT-G-GAG-TT-T--G-A-TCC---GA-G-T-TG-T-A-T-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57273 : tTTTT--A-T--T--AT-GTTTT-G-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57274 : tTTTT--A-G--T--AT-GTTTT-G-GAG-GTAT--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57275 : tTTTT--A-G--T--AT-GTGTT-G-GAG-TA-T--G-A-TCT---GG-G-T-TG-T-A-C-TC-AA--T-AC-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57276 : tTTTT--A-GC-T--ATTGTTTTTG-AAG-TA-T--G-A-TCTTGAGA-A-T-TG-T-A-C-TC-AA--A-A----A-CAT-GG-CTG--T-G-CAT-ATGATA
gi|57277 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT----G-A-TCT---GA-A-T-T--T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTA--T-G-CAT-A-GATAA
gi|57278 : tTTTT--A-G--T--AT-GCTTT-A-GAG-TT-T--A-G-TCT---GA-G-T-TG-T-A-C-CC-AA--A-AC-AAA-CAT-GG-CTG--T-G-TAT-A-GATAA
gi|57279 : tTTTT--A-G--T--AT-CGTTT-G-AAG-TC-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GA-CTG--T-G-CAT-A-GATAA
gi|57280 : tTTTT--A-GCAT--AT-GCTTT-G-GAG-TT-T--G-A-TTT---GA-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAT-A-TATAA
gi|57281 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT-C--G-A-TCT---GA-G-T-T--T-A-C-TC-AA--A-AC-AAAACAT-GT-CTG--T-G-CAT-A-GATA
gi|57282 : tTTTT--A-G--TT-AT-GCTTT-G-GAG-TT-T--A-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAAGAAT-GGACTG--T-G-CAT-A-TATAA
gi|57283 : tTTTT--A-G--T--AT-CTTTT-G-GAG-TT-T--G-A-TCT---G--G-T-TGTT-A-C-TC-AA--A-AC--AA-CAT-GG-TTG--T-G-GAT-A-GATAA
gi|57284 : tTTTT--A-G--T--AT-CTTTT-G-GAG-TT-T--G-A-TCT---G--G-T-TGTT-A-C-TC-AA--A-AC--AA-CAT-GG-TTG--T-G-GAT-A-GATAA
gi|57285 : tTCTT--A-GA-T--AT-GTTTT-G-GAG-TT-T--GAA-TCT---GAGG-T-TG-T-A-C-TC-AAAGA-AC-AAA-CAT-GG-TTG--TGG-CAT-A-GATAA
gi|57286 : tTTTT--A-A--T--GT-GCTTT-G-GAG-TT-T--G-A-TCTT--GA-G-T-TG-T-A-C-TC-AA--A-AC--AA-CATAGG-TTG--T-A-CAT-A-GATAA
gi|57287 : tTTTT--A-G--T--AT-ACTTT-A-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-T-GC-AA--A-AC-AAA-CAT-AA-CTG--T-G-CAT-
gi|57288 : tTTTT--A-GG-C--AT-ACTTT-G-GAG-CT-T--G-C-TCA---GA-A-T-CA-T-A-C-TC-AA--A-AC-AAA-CAT-AG-CTG--T-G-CAC-T-GATGA
gi|57289 : tTTTT--A-G--T--CT-GCTTC-G-AAG-CT-T--G-C-TCC---GA-G-T-CA-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-A-CA
gi|57290 : tTCTT--A----T--AT-GCTTT-G-GAA-AT-T--G-A-ACT---GA-A-C-TG-T-A-C-TT-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAT-A-GATAA
gi|57291 : t-G--T--AT-GCTTT-G-GAG-TT-T--T-A-TAT---GA-G-T-TG-C-A-C-TTTAA--A-AC-AAA-CGT-GG-CTG--T-G-CAT-A-GATAA
gi|57292 : tttttagtacatTTTT--A-G--T--AT--CTTT-A-GAG-TT-T--G-G-CCT---GA-G-T-TG-T-A-C-AC-AA--A-AC-AAA-CAT-GA-CTG--T-G-CAC-T-GACAA
gi|57293 : tTTTG--A-G--T--AT-GCTT------G-TT-T--G-A-TTT---GC-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAT-GG-CTG--T-G-CAG-A-GATAA
gi|57294 : tTTT-GTGAG-CT-T--T---TCA---GA-AAC-CG-T-A-C-TC-AA--A-AC-AA--CAC-GG-CTG--T-G-CAC-A-GATAA
gi|57295 : tttttgcgaacgaTTTG--A-G--T--AT-GCTTC-G-GAG-TT-T--G-C-CAA---GA-G-T-TG-T-A-C-TC-AA--A-AT-GAA-CAT-GA-TCG--C-G-CAT-A-GACAA
gi|57296 : tTTTTCGA-G--T--TT-GCTTT-G-GAG-CT-T--G-C-TCA---GA-G-T-CG-T-A-C-TC-AT--T-AA-AAA-TAT-GA-CTG--C-G-CAT-A-GATA
gi|57297 : tTT--A-G--TT-AT-GCTTT-G-GAA-TT-T--G---TCT---GA-GTT-TG-T-A-C-TC-AA--A-AC-AAA--AT-GG-TTG--T-G-CAT-A-GATA
gi|57298 : ttgTTTT--AAG--C--AC-GGTTT-G-GGG-TT-T--G-A-TCC---GA-G-T-TG-T-A-C-TT-GA--A-AT-AAA-CAT-GT-CTG--T-G-AAT-A-GAT
gi|57299 : TTTG--A-G--T--AT-ACTCT-G-GGG-CT-C--G-C-TCA---GA-G-A-CG-T-A-C-TC-AA--T-AA-AAA-CAT-GG-CTG--T-G-CGT-A-GA
gi|57300 : tTTTT--A-GGGT--AT-TCTTT-G-GAG-CT-T--G-C-TCA---GC-A-T-CA-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--
gi|57301 : tTTTT--A-G--T--AA-GCTTT-A-GAG-CT-T--G-C-TCA---GA-G-T-AG-T-A-C-GC-AA--C-AC-AGA-CGT-GA-CTA--T-G-GAT-A-GACA
gi|57302 : tTTTT--ACG--T--AT-GCTTT-G--AG-TT----G-G-TCT---GA-G-T-TG-T-AAC-TC-AAC-A-AC-AAA-CAT-GG-CTGCTT-G-C-T-A-GATA
gi|57303 : tTTTT--A-G--T--GT-GTTTA-G-GTG-TT----G-A-TCT---GA-G-T-TG-TGA-G-TC-AA--ATAC-AAA-CATAGG-TTG--G-G-CAT-A-GATA
gi|57304 : tTTTG--G-G--T--AT-CCTTC-G-GAG-CT-T--T-C-TCA---TT-A-T-CG-T-A-C-AC-AA--ACAG-AAA-CAT-GG-CTG--T-T-CAT-A-GATAA
gi|57305 : tTTTT--A----T--AT-AGTTT-G--AG-TT-T--G-A-TCT---GA-G-TGTG-T-A-CTTC-CA--A-AC-AAA-CAT-GGTTTG--T-GCCAT-A--ATAA
gi|57306 : tTTTT--A-G--T--AT-GTTTT-G-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-A-CAT-A-GATAA
gi|57307 : TTTT--A-G--T--AT-GCTTT-A-GAG-CT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-GA-CAG--T-G-CAT-A-GATAA
gi|57308 : TTTT--A-G--T--GT-GCTTT-A-GAA-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AC-AAA-CAT-TG-CTG--T-G-CAT-A-GATAA
gi|57309 : TTTT--A-G--T--AT-GCTTT-A-GAG-TT-T--G-G-TCA---GG-G-T-T--T-A-T-TC-AA--A-AC-AAT-CAT-GG-CTG--T-G-C
gi|57310 : TTTT--A-A--T--AT-GCTTT-G-A----T-T--G-A-TCG---GA-G-T-TA-T-T-C-AC-AA--A-AT-AAA-AAT-GG-TTG--T-G-CAT-A-GATAA
gi|57311 : TTTT--A-AAAT--AT-GTTTT-G--AG-TT-T--G-AATCT---GA-G-T-TG-T-A-C-T---A--A-AC-AAA-CAT--G-TTG--T-G-CAT-A-GATGA
gi|57312 : TTTT--A-G--TCAAT-GCTTC-GCGAG-TT-TTTG-C-TCA---GA-G-A-TG-T-T-C-TC-AA--A--C-AAA-CAT-GG-CTG--TGG-CAT-A-GATGA
gi|57313 : TTTT--A-G--T--AT-GTTTT-G-GAG--T-T--G-A-TCC---GA-G-T-TT-T-----TC-AA--A----AAA-CAT-G---TG--T-G-CAT-A-G-TAA
gi|57314 : TTG--A-G--T--AT-GCTTA-G-GAG-CT-C--G-A-TCA---GA-G-T-CG-T-A-C-TC-AA--T-AG-AAA-CAC-GA-CT
gi|57315 : TTT--A-G--T--AT-ACTTT-A-GAG--T-T--G-A-TCT---GA-G-T-T--T-A---GC-AA--A-AC--AA-CAT-AA-CTG--T-G-AAT-A-GATAA
gi|57316 : T--G-G--T--CT-GCTTT-G-GAG-TT-T--G-A-TCT---GA-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAG-GG-CTG--T-G-CAT-A-GATAA
gi|57317 : --A-G--T--AC-ACTTC-G-GGG-CT-T--G-C-TCA---GA-G-T-TG-T-A-C-TC-AA--A-G-------AT-GG-CTG--T-G-AAT-A-GAT
gi|57318 : -G--T--AT-GCTTT-G-GAG-CT-T--A-A-TCA---GA-G-T-TA-T-A-C-TC-AA--T-AA-AAA-CAT-GA-CTG--C-G-CAT-A-AATA
gi|57319 : -G--T--AT-GATTT-G-GAG-CT-T--G-C-TC-----A-G-T-CA-T-A-C-TC-AA--T-A--AAA-CAT-TG-CTG--G-G-CAT-A-GATAA
gi|57320 : -G--T--AT-GCTTT-G-GAG-CT-T--A-C-ACA---GA-G-T-TG-T-A-C-T------A-AG-AAA-CAT-GG-TTG--C-C-TAT-A-GACAA
gi|57321 : --T--AT-GCTTC-A-GAG-CT-T--G-C-TCA---GA-G-T-GG-T-A-C-TC-AA--A-AC-AAT-CTT-GG-CTG--T-G-TAT-A-GACA
gi|57322 : --T--AT-GCTTT-G-GAG-CT-T--A-C-TCA---TA-G-T-CG-T-A-C-T--AA--A-A--AAA--AT-GG-CTG--C-G-CAT-G-AATAA
gi|57323 : -GTTTT-G-GAG-T-----G-C-TCG---GA-T-T-CA-T-A-C-TC-AA--A-AT-AAA-CAC-GG-CTG--T-G-CAT-A-AATA
gi|57324 : -GCTTT-G-GAG-CT-T--G-C-TC-----A-G-T-CA-C-A-C-TC-AA--T-AA-AAA-CAT-GG-CTG--C-A-CAT-A-GATAA
gi|57325 : TTT-G-GAG-CT-T--T-C-TCA---GA-A-C-CG-T-A-C-TC-AA--A-AC-GAA-CAC-GG-CTG--T-G-CAA-A-GATAA
gi|57326 : tTTT-G-GAGCTT-T--C-A-TCA---GA-A-C-CG-T-A-C-TC-AA--A-AC--AA-CAC-GG-CTG--T-G-CACAA-GATAA
gi|57327 : tTTT-G-GAG-CT-T--G-C-TCA---GA-G-C-CG-T-T-C-TC-AA--T-ATAAAA-CAT-GG-CTG--C-G-CAT-T-GACAA
gi|57328 : tTT-G-AAG-CT-T--G-C-TCAA--GA-G-C-TG-T-A-C-TC-AA--T-A--AAA-CAT-GG--TC--C-G-CAT-A-GATAA
gi|57329 : G-CT-T--G-C-TCA---GA-C-T-CG-T-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--C-A-CAT-A-GACAA
gi|57330 : G-CT-T--G-C-TCA---GA-C-T-CG-C-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--C-A-CAT-A-GACAA
gi|57331 : -TCA---GT-G-C-TG-G-A-C-TC-AA--A-AC-AAA-CAT-GG-CTG--T-G-CAC-A-GATAA
gi|57332 : ---GA-G-T-TG-T-A-C-TC-AA--A-AT-AAA-CAC-GG-CTG--T-G-CAT-A-GATA