lowQualScore : 3333333333333333333333333333333333333333
lowQualScore : 0 1 22 33 0 0 555 4 1 333 0 1 0 1 11 8888888888888888888888888888888888888888 0 0 11111 1 0 0 1 0 0 0 11 0 0 0 2 1 2 1
lowQualScore : . . .. .. . . ... . . ... . . . . .. ........................................ . . ..... . . . . . . . .. . . . . . . .
lowQualScore : 9 8 11 00 8 8 999 1 6 111 8 6 8 6 11 2222222222222222222222222222222222222222 8 8 99999 3 7 7 3 7 7 7 66 7 7 7 0 3 0 3
consensus : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
Reference ( gi|20857 ) : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20860 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CTTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20866 : GCCCCCGCC-A-TA-A--AA-A-TGGCC---GCGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC-GTC---------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20874 : GCCCCCGCC-A-T--A--AA-A-TGGCC---AGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCATTTAAATTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20869 : GCTCCAGCC-A-T--A--AA-A-TGGTC---GGGGGCA-T-ATAGT---G-TT-T-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCA-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20868 : GCCCCCGCC-A-T--A--AA-A-TGGCC----GGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CCGGTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-GC-A-CACAT
gi|20880 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CT-GTCA--------TTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCTG-TTCA-T-TA-TC-T-T-TG--C-AA-CG-G-TT-CA-A-CACATTca
gi|20876 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCTG-TTCA-T-TA-TC-T-C-AG--C-AA-CG-G-TT-CA-A-TACATT
gi|20865 : GCCCCCGCC-A-T--ATAAA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC-GTCATTCTGTCATTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20877 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CATATT-CC-GTCA--------TTCC-------ATTCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-CA-A-CACATT
gi|20858 : GCCCCCAAC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CT-GTCA-----------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20875 : GCCCCCGCC-A-TTTA--AA-A-TGGCC----GGGGCA-T-ATAGT---G-TT-A-C-CCTTTTCCC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-TC-A-CACAT
gi|20889 : GCCCCCGTC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAAT---G-TT-A-C-CCTGTT-CA-GTCC--------GTCT-------GTCATTC-------C-GT-CA-TGAT-----TTGGTTTCCG-TTCA-T-TA-TC-G-C-TG--C-AA-TG-A-TT-CC-A-CACATTca
gi|20886 : GCCCCCGCC-A-T--A--AA---TGGCC---GGGGCCA-T-ATAGT---G-TT-A-C-CC-GTT-CC-GTCA--------TTCCTCATTCTGTCATTC-------T-GTTCA-TCAT-----TTGGTTTCCG-GTCA-T-TA-TC-T-C-TG--C-AA-CG-C-TT-GC-A-CACATT
gi|20851 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC----------------------------------------GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20888 : GCCCCCGCC-AAT--A--AA-A-TG-CC---GGGG-CA-T-ATAGT---G-TT-A-C-CCTGTT-CT-GTCA--------TTC--------GTCATTCGTCTATCC-GT-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20873 : GCCCCCGCC-A-T--A--TA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCAT-----------------TCAT-----TTGGTTTCCG-TTCA-T-TA-TA-T-C-TG--C-AA--G------GC-A-CACATT
gi|20871 : GCCCCCGCCCA-T--A--AA-AATGGCC---GGGGGCA-T-ATAGT---G-T--A-C-CCTGT-------------------CC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TTGGC-A-CACA
gi|20864 : GCCCCCGCC-A-T--A--AA-A-TTGCT---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CT-GTCC--------T--------------TTC-------C-GT-CA-TCAT-----TT-TTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CGCG-TT-GC-A-CACATT
gi|20853 : GCCCCTGCC-A-T--A--AA---TGGCC---AGGGCTA-TCATAGT---G-TT-A-C-CCTGTT-----------------TCT-------GTCATTC-------CAGT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20863 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCAAT-ATAGTT--G-TT-A-C-CC--------GT----------TTCC-------GTCCTTC---------GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-GTTT-GT-A-CACATT
gi|20852 : GCCCCCACC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATATT---G-TT-A-C-CCTGTT-CT-GTTA-----------------------------------------TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20859 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC-GT----------------------------------------CA-TCAT-----TTGGTTTCCG--TCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-CA-A-CACATT
gi|20887 : GCCCCCGCC-A-T--A--AG-A-TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-T----------TTA--------TTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-GA-C----TT-CA-A-CGCATT
gi|20861 : GCCCCCGCC-A-T--A--AA-A-TGGGC---GGGG-CA-T-ATAGT---G-TT-A-C-CCTGT--------------------------------TTC-------C-GT-CA-TCAT-----TTGGTTGCCG-TTCA-T-TA-TC-T-C-TG----AA-CG-G-TT-GC-A-CACATT
gi|20855 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---G-CT-A-C-CCTTTT-CC----------------------------------------GT-CA-TCAT-----ATGGTTTCCG-TACA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CATATT
gi|20879 : GCCCCCGCC-A-T--A--AA---TGGC------GGGCA-T-ATAGT---G-TT-AAC-CCTGTT-CC--TCA--------TT--------------TC-------C-GT-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TT-T-C-TG--A-AA-CG-G-TT-GC-A-CACATT
gi|20856 : GCCCCCGCC-A-T--G--AATA-TGGCC---GAGGGCA---ATAGT---G-TT-A-C-CCTGTT-CC-GTCA------------------------------------T-CA-TTGT-----T---TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT--C-A-CTCA
gi|20884 : GCCCCCGCC-C-T--A--A----TGGCC---GGG--CAAT-ATAGT---G-TT-G-C-C-TGTT-CC-GT-A--------TTC--------AT--TTC-------C-GT-CAATCAA-----TTG-TTTCGT-TTCA-TGTA-TC-TTC-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20862 : GCCCCCGCC-AGT--T--AA-A-GGGCCT--GGGGGCA---ATAGT---G-TT-A-C-CCTATC-CC-GTCA--------TT------------A----------------A---AT-----TTGG-TTCCGTTTCA-T-TA-TC-T-C-GG--CTAA-CG-G--T-GC-A-CACAT
gi|20849 : GCCCCTGCC-A-T--T--TA-A-TGACCTGGAGGGGCA-T-ATAGT---G-AT-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----TGACTTTCCA-TTCA-T-TA-TC-T-C-GA--C-AA-CA-G-TT-GC-A-CACATTca
gi|20848 : GCCCCTGCC-A-T--T--TA-A-TGACCTG-GAGGGCACT-ATAGT---G-AT-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----TGACTTTCCA-TTCA-T-TA-TC-T-C-GA--C-AA-CA-G-TT-GC-A-CACATTa
gi|20850 : GCCCCTGCC-A-T--T--TA-A-TGACCTG-GAGGGCAAT-ATAGT---G-AT-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----T-GCTTTCCA-TTCA-T-TA-TC---C-GA--C-AA-CA-G-TTTGC-A-CACATTa
gi|20891 : CCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGTAGTG-TT-A-C-CCTGTT-CT-GTCA--------TTCC-------GTCCTTC-------A-GC-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--T-AA-CG-G-TT-CG-A-CACTTTa
gi|20890 : CCCCCCCC-A-T--A--AA---TGGCC---GGGGGCA-T-ATAGT---G-TT-A-C-CCTGTT-CC-GTCA--------TTTCCGTCCTTGTCCTTC-------C-GT-C--TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-A-TT-GC-A-CACATT
gi|20878 : CCCCGCC-A-T--A--AA-A-TGGCC---GGGAGC--T-ATAGT---G-TT-A-C-CCTGTT-CC-GTTAT-------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-GCTT-GC-A-CACATT
gi|20872 : gCCCCGCC-A-T--A--AA-A-TGGC----GGGGGCA-T-ATAGTT--G-TT-A-C-C-TGTT-CC------------------------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-GC-A-CACATT
gi|20867 : gCCCCGCC-A-T--A--AA-A-TGGCC---GGG--CA-T-ATAGT---G-TT-A-C-CTTGT-------------------CC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCC--TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20883 : gCCCCGCC-A-T--A--AA---TGGCC---GGGGACA-T-ATAGT-----TT-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCTTCC-------C-AT----TCAT-----TTGG-TTCCG-TTCA-T-TA-TCTT-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20885 : gCCCCGCC-A-T--A--AA-A-TG-CC---GGAGGCA-T-ATAGT---G-T--A-C-CCATTT-CT-GTCA--------T-CC-------G---------------GT-CA-TCAT-----TTGGTTTCCGTTTCA-T-TA-TC-T-C-TG--C-AACCG-G-TT--C-A-CACAT
gi|20870 : gCCCCGCC-A-T--A--AA-A-TGGCC---AAGGGCA-TTGTAGT---G-TC-A-C-CCTGTT-T-----A--------CCCT-------GTC-----------C-AT-CA-TCAT-----TTGGTTTCCG--TCA-T-TA-TC-G-CTTG--C-AA-CA-G-TT-GC-A-CACAT
gi|20882 : gCCCCGCC-A-T--A--AA-T-TGGCC----GGGGCA-T-ATAGT---G-TT-A-CGGCTGTT-CC-G---------------------------------------T-CA-TCAT-----TTGTTTTCCG-TT-A-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GCAA-CGCATT
gi|20881 : gCCCCGCC-A-T--A--AA-T-TGGCC----GGGGCA-T-ATAGT---G-TT-A-CGGCTGTT-CC-G---------------------------------------T-CA-TCAT-----TTGTTTTCCG-TT-A-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GCAA-CGCATT
gi|20892 : gCCCTGCC-A-T--TT-AA-A-TGACCTGAGGGGCCA-T-ATAGT---G-AT-A-T-CCTGT-------------------------------A--C-------C-AT-CA-TCAT-----TGACTTTCCA-TTTA-T-TA-TC-T-C--GACC-AA-CG-G-TT-GC-A-CACATT
gi|20893 : CCCGCC-A-T--A--AA-A-TGGCT---GGGGGCAGT-ATAGT---G-TT-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCA-TTCATT-TA-TC-T-C-TG--C-AA-CG-G-TT-TTAA-CACATTa
gi|20854 : GCC-A-T--TT-AA-A-TGATC---AGTGGCA-T-ATAGT---GAAT-A-T-CCTGTT-CC-ATCA--------------------TCATT--------G-GA-CA--------------TTTCC--TTCA-T-TA-AT-T-C-AA--C-AA-AG-GTTT-GC-A-CACATT
gi|20897 : gcccgtgA-A-TGGCC---GGGG-CA-T-ATAGT---G-TTTA-G-CCTGTT-CC-GTCA--------TTCC---------------------T-GT-CA-TCAT-----TGGTTTTCCG-TTCA-T-TATTC-T-C-TG--C-AA-CG-G-TT-GC-ACCATATTa
gi|20896 : A-A-TGGCC---GGGG-CA-T-ATAGT---G-TTTA-G-CCTGTT-CC-GTCA--------TTCC---------------------T-GT-CA-TCAT-----TGGTTTTCCG-TTCA-T-TATTC-T-C-TG--C-AA-CG-G-TT-GC-ACCATATT
gi|20894 : A-A-TGGCC---GGGCGCA-T-GT--T---G-T-------------------A--------TTGT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20895 : atttA-A-TGGCC---GGGGGCA-T-ACTGT---G-TT-A-C-A-TGTA-CC---------------CT-------GT---TC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-TA-A-CACATT
gi|20898 : TCC-------C-GT--A-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC---C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20900 : T-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20899 : T-CA-TCAT-----TTGTTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20901 : T-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20906 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20903 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20902 : TTTCCG-TTCA-T-TA-TC-T-C-TA--C-AA-CG-G-TT-GC-A-CACATT
gi|20905 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20908 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATa
gi|20904 : TTTCCA-TTCA-T-TA-TC-T-C-TGG-C-AA-CG-G-TT-GC-A-CACATT
gi|20907 : TTTCCG-TTCA-T-TA-TC-T-C-TA--T-AA-CA-G-TT-GC-A-CACATT
gi|20909 : TTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
Alignments
lowQualScore : 33333333333333333333333333333333
lowQualScore : 0 1 22 22 0 0 555 4 1 333 0 1 0 1 55555555555555555555555555555555 2222222 0 0 0 11111 1 0 0 1 0 0 0 11 0 0 0 1 1 1 1
lowQualScore : . . .. .. . . ... . . ... . . . . ................................ ....... . . . ..... . . . . . . . .. . . . . . . .
lowQualScore : 9 7 11 99 8 8 888 0 6 000 8 6 8 6 33333333333333333333333333333333 5555555 8 7 7 99999 3 6 6 3 6 6 6 55 6 6 6 3 9 9 3
consensus : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
Reference ( family-325 ) : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20848 : GCCCCTGCC-A-T--T--TA-A-TGACCTG-GAGGGCACT-ATAGT---GA-T-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----TGACTTTCCA-TTCA-T-TA-TC-T-C-GA--C-AA-CA-G-TT-GC-A-CACATT
gi|20849 : GCCCCTGCC-A-T--T--TA-A-TGACCTGGAGGGGCA-T-ATAGT---GA-T-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----TGACTTTCCA-TTCA-T-TA-TC-T-C-GA--C-AA-CA-G-TT-GC-A-CACATTa
gi|20850 : GCCCCTGCC-A-T--T--TA-A-TGACCTG-GAGGGCAAT-ATAGT---GA-T-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----T-GCTTTCCA-TTCA-T-TA-TC---C-GA--C-AA-CA-G-TTTGC-A-CACATTa
gi|20851 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATTa
gi|20852 : GCCCCCACC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATATT---GT-T-A-C-CCTGTT-CT-GTTA--------T---------------------------------CAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20853 : GCCCCTGCC-A-T--A--AA---TGGCC---AGGGCTA-TCATAGT---GT-T-A-C-CCTGTT-----------------TCT-------GTCATTC-------CAGT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20854 : GCC-A-T--TT-AA-A-TGATC---AGTGGCA-T-ATAGT---GAAT-A-T-CCTGTT-CC-ATCA--------T------------CATTG---------GA-CA-T-------------TTCC--TTCA-T-TA-AT-T-C-AA--C-AA-AG-G-TTTGC-A-CACATT
gi|20855 : gcccgtgGCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GC-T-A-C-CCT-T--------------------------------TTC-------C-GT-CA-TCAT-----ATGGTTTCCG-TACA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CATATTa
gi|20856 : GCCCCCGCC-A-T--G--AATA-TGGCC---GAGGGCA---ATAGT---GT-T-A-C-CCTGTT-CC-GTCA------------------------------------T-CA-TTGT-----T---TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT--C-A-CTCA
gi|20857 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20858 : GCCCCCAAC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCA-----------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20859 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG--TCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-CA-A-CACATT
gi|20860 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CTTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20861 : GCCCCCGCC-A-T--A--AA-A-TGGGC---GGGG-CA-T-ATAGT---GT-T-A-C-CCTGTT--------------------------------TC-------C-GT-CA-TCAT-----TTGGTTGCCG-TTCA-T-TA-TC-T-C-TG----AA-CG-G-TT-GC-A-CACATT
gi|20862 : GCCCCCGCC-AGT--T--AA-A-GGGCCT--GGGGGCA---ATAGT---GT-T-A-C-CCTATC-CC-GTCA--------TT------------A----------------A---AT-----TTGG-TTCCGTTTCA-T-TA-TC-T-C-GG--CTAA-CG-G--T-GC-A-CACAT
gi|20863 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCAAT-ATAGTT--GT-T-A-C-CC--------GT----------TTCC-------GTCCTTC---------GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-GTTT-GT-A-CACATTca
gi|20864 : GCCCCCGCC-A-T--A--AA-A-TTGCT---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCC--------T--------------TTC-------C-GT-CA-TCAT-----TT-TTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CGCG-TT-GC-A-CACATT
gi|20865 : GCCCCCGCC-A-T--ATAAA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCATTCTGTCATTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20866 : GCCCCCGCC-A-TA-A--AA-A-TGGCC---GCGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTC---------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20867 : CCCCGCC-A-T--A--AA-A-TGGCC---GGG--CA-T-ATAGT---GT-T-A-C-CTTGT-------------------CC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCC--TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20868 : gGCCCCCGCC-A-T--A--AA-A-TGGCC----GGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CCGGTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-GC-A-CACAT
gi|20869 : GCTCCAGCC-A-T--A--AA-A-TGGTC---GGGGGCA-T-ATAGT---GT-T-T-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCA-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATTca
gi|20870 : CCCCGCC-A-T--A--AA-A-TGGCC---AAGGGCA-TTGTAGT---GT-C-A-C-CCTGTT-T-----A--------CCCT-------GTC-----------C-AT-CA-TCAT-----TTGGTTTCCG--TCA-T-TA-TC-G-CTTG--C-AA-CA-G-TT-GC-A-CACAT
gi|20871 : gGCCCCCGCCCA-T--A--AA-AATGGCC---GGGGGCA-T-ATAGT---GT---A-C-CCTGT-------------------CC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TTGGC-A-CACA
gi|20872 : CCCCGCC-A-T--A--AA-A-TGGC----GGGGGCA-T-ATAGTT--GT-T-A-C-C-TGTT-CC------------------------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-GC-A-CACATT
gi|20873 : gGCCCCCGCC-A-T--A--TA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCAT-----------------TCAT-----TTGGTTTCCG-TTCA-T-TA-TA-T-C-TG--C-AA--G------GC-A-CACATT
gi|20874 : GCCCCCGCC-A-T--A--AA-A-TGGCC---AGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCATTTAAATTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20875 : GCCCCCGCC-A-TTTA--AA-A-TGGCC----GGGGCA-T-ATAGT---GT-T-A-C-CCTTTTCCC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-TC-A-CACAT
gi|20876 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCTG-TTCA-T-TA-TC-T-C-AG--C-AA-CG-G-TT-CA-A-TACATTca
gi|20877 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CATATT-CC-GTCA--------TTCC-------ATTCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-CA-A-CACATT
gi|20878 : CCCCGCC-A-T--A--AA-A-TGGCC---GGGAGC--T-ATAGT---GT-T-A-C-CCTGTT-CC-GTTAT-------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-GCTT-GC-A-CACATT
gi|20879 : gGCCCCCGCC-A-T--A--AA---TGGC------GGGCA-T-ATAGT---GT-T-AAC-CCTGTT-CC--TCA--------TT--------------TC-------C-GT-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TT-T-C-TG--A-AA-CG-G-TT-GC-A-CACATT
gi|20880 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCA--------TTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCTG-TTCA-T-TA-TC-T-T-TG--C-AA-CG-G-TT-CA-A-CACATT
gi|20881 : CCCCGCC-A-T--A--AA-T-TGGCC----GGGGCA-T-ATAGT---GT-T-A-CGGCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGTTTTCCG-TT-A-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GCAA-CGCATT
gi|20882 : gCCCCGCC-A-T--A--AA-T-TGGCC----GGGGCA-T-ATAGT---GT-T-A-CGGCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGTTTTCCG-TT-A-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GCAA-CGCATT
gi|20883 : gCCCCGCC-A-T--A--AA---TGGCC---GGGGACA-T-ATAGT----T-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCTTCC-------C-AT----TCAT-----TTGG-TTCCG-TTCA-T-TA-TCTT-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20884 : gGCCCCCGCC-C-T--A--A----TGGCC---GGG--CAAT-ATAGT---GT-T-G-C-C-TGTT-CC-GT-A--------TTC--------AT--TTC-------C-GT-CAATCAA-----TTG-TTTCGT-TTCA-TGTA-TC-TTC-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20885 : CCCCGCC-A-T--A--AA-A-TG-CC---GGAGGCA-T-ATAGT---GT---A-C-CCATTT-CT-GTCA--------T-CC-------G---------------GT-CA-TCAT-----TTGGTTTCCGTTTCA-T-TA-TC-T-C-TG--C-AACCG-G-TT--C-A-CACAT
gi|20886 : gGCCCCCGCC-A-T--A--AA---TGGCC---GGGGCCA-T-ATAGT---GT-T-A-C-CC-GTT-CC-GTCA--------TTCCTCATTCTGTCATTC-------T-GTTCA-TCAT-----TTGGTTTCCG-GTCA-T-TA-TC-T-C-TG--C-AA-CG-C-TT-GC-A-CACATT
gi|20887 : GCCCCCGCC-A-T--A--AG-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-T----------TTA--------TTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-GA-C----TT-CA-A-CGCATT
gi|20888 : GCCCCCGCC-AAT--A--AA-A-TG-CC---GGGG-CA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCA--------TTC--------GTCATTCGTCTATCC-GT-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20889 : GCCCCCGTC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAAT---GT-T-A-C-CCTGTT-CA-GTCC--------GTCT-------GTCATTC-------C-GT-CA-TGAT-----TTGGTTTCCG-TTCA-T-TA-TC-G-C-TG--C-AA-TG-A-TT-CC-A-CACATT
gi|20890 : CCCCCCCC-A-T--A--AA---TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTTCCGTCCTTGTCCTTC-------C-GT-C--TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-A-TT-GC-A-CACATT
gi|20891 : CCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGTAGTGT-T-A-C-CCTGTT-CT-GTCA--------TTCC-------GTCCTTC-------A-GC-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--T-AA-CG-G-TT-CG-A-CACTTT
gi|20892 : CCCTGCC-A-T--TT-AA-A-TGACCTGAGGGGCCA-T-ATAGT---GA-T-A-T-CCTGT-------------------------------A--C-------C-AT-CA-TCAT-----TGACTTTCCA-TTTA-T-TA-TC-T-C--GACC-AA-CG-G-TT-GC-A-CACATT
gi|20893 : CCCGCC-A-T--A--AA-A-TGGCT---GGGGGCAGT-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCA-TTCATT-TA-TC-T-C-TG--C-AA-CG-G-TT-TTAA-CACATTa
gi|20894 : A-A-TGGCC---GGGCGCA-T-GT--T---GT--------------------A--------TTGT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20895 : atttA-A-TGGCC---GGGGGCA-T-ACTGT---GT-T-A-C-A-TGTA-CC---------------CT-------GT---TC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-TA-A-CACATT
gi|20896 : A-A-TGGCC---GGGG-CA-T-ATAGT---GT-TTA-G-CCTGTT-CC-GTCA--------TTCC---------------------T-GT-CA-TCAT-----TGGTTTTCCG-TTCA-T-TATTC-T-C-TG--C-AA-CG-G-TT-GC-ACCATATT
gi|20897 : A-A-TGGCC---GGGG-CA-T-ATAGT---GT-TTA-G-CCTGTT-CC-GTCA--------TTCC---------------------T-GT-CA-TCAT-----TGGTTTTCCG-TTCA-T-TATTC-T-C-TG--C-AA-CG-G-TT-GC-ACCATATT
gi|20898 : TCC-------C-GT--A-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC---C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20899 : T-CA-TCAT-----TTGTTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20900 : T-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20901 : T-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20902 : TTTCCG-TTCA-T-TA-TC-T-C-TA--C-AA-CG-G-TT-GC-A-CACATT
gi|20903 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20904 : TTTCCA-TTCA-T-TA-TC-T-C-TGG-C-AA-CG-G-TT-GC-A-CACATT
gi|20905 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20906 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATTa
gi|20907 : TTTCCG-TTCA-T-TA-TC-T-C-TA--T-AA-CA-G-TT-GC-A-CACATT
gi|20908 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACAT
gi|20909 : TTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
Alignments
lowQualScore : 33333333333333333333333333333333
lowQualScore : 0 1 22 22 0 0 555 4 1 333 0 1 0 1 55555555555555555555555555555555 2222222 0 0 0 11111 1 0 0 1 0 0 0 11 0 0 0 1 1 1 1
lowQualScore : . . .. .. . . ... . . ... . . . . ................................ ....... . . . ..... . . . . . . . .. . . . . . . .
lowQualScore : 9 7 11 99 8 8 888 0 6 000 8 6 8 6 33333333333333333333333333333333 5555555 8 7 7 99999 3 6 6 3 6 6 6 55 6 6 6 3 9 9 3
consensus : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
Reference ( family-325 ) : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20848 : GCCCCTGCC-A-T--T--TA-A-TGACCTG-GAGGGCACT-ATAGT---GA-T-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----TGACTTTCCA-TTCA-T-TA-TC-T-C-GA--C-AA-CA-G-TT-GC-A-CACATT
gi|20849 : GCCCCTGCC-A-T--T--TA-A-TGACCTGGAGGGGCA-T-ATAGT---GA-T-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----TGACTTTCCA-TTCA-T-TA-TC-T-C-GA--C-AA-CA-G-TT-GC-A-CACATTa
gi|20850 : GCCCCTGCC-A-T--T--TA-A-TGACCTG-GAGGGCAAT-ATAGT---GA-T-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----T-GCTTTCCA-TTCA-T-TA-TC---C-GA--C-AA-CA-G-TTTGC-A-CACATTa
gi|20851 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATTa
gi|20852 : GCCCCCACC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATATT---GT-T-A-C-CCTGTT-CT-GTTA--------T---------------------------------CAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20853 : GCCCCTGCC-A-T--A--AA---TGGCC---AGGGCTA-TCATAGT---GT-T-A-C-CCTGTT-----------------TCT-------GTCATTC-------CAGT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20854 : GCC-A-T--TT-AA-A-TGATC---AGTGGCA-T-ATAGT---GAAT-A-T-CCTGTT-CC-ATCA--------T------------CATTG---------GA-CA-T-------------TTCC--TTCA-T-TA-AT-T-C-AA--C-AA-AG-G-TTTGC-A-CACATT
gi|20855 : gcccgtgGCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GC-T-A-C-CCT-T--------------------------------TTC-------C-GT-CA-TCAT-----ATGGTTTCCG-TACA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CATATTa
gi|20856 : GCCCCCGCC-A-T--G--AATA-TGGCC---GAGGGCA---ATAGT---GT-T-A-C-CCTGTT-CC-GTCA------------------------------------T-CA-TTGT-----T---TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT--C-A-CTCA
gi|20857 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20858 : GCCCCCAAC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCA-----------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20859 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG--TCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-CA-A-CACATT
gi|20860 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CTTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20861 : GCCCCCGCC-A-T--A--AA-A-TGGGC---GGGG-CA-T-ATAGT---GT-T-A-C-CCTGTT--------------------------------TC-------C-GT-CA-TCAT-----TTGGTTGCCG-TTCA-T-TA-TC-T-C-TG----AA-CG-G-TT-GC-A-CACATT
gi|20862 : GCCCCCGCC-AGT--T--AA-A-GGGCCT--GGGGGCA---ATAGT---GT-T-A-C-CCTATC-CC-GTCA--------TT------------A----------------A---AT-----TTGG-TTCCGTTTCA-T-TA-TC-T-C-GG--CTAA-CG-G--T-GC-A-CACAT
gi|20863 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCAAT-ATAGTT--GT-T-A-C-CC--------GT----------TTCC-------GTCCTTC---------GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-GTTT-GT-A-CACATTca
gi|20864 : GCCCCCGCC-A-T--A--AA-A-TTGCT---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCC--------T--------------TTC-------C-GT-CA-TCAT-----TT-TTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CGCG-TT-GC-A-CACATT
gi|20865 : GCCCCCGCC-A-T--ATAAA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCATTCTGTCATTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20866 : GCCCCCGCC-A-TA-A--AA-A-TGGCC---GCGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTC---------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20867 : CCCCGCC-A-T--A--AA-A-TGGCC---GGG--CA-T-ATAGT---GT-T-A-C-CTTGT-------------------CC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCC--TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20868 : gGCCCCCGCC-A-T--A--AA-A-TGGCC----GGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CCGGTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-GC-A-CACAT
gi|20869 : GCTCCAGCC-A-T--A--AA-A-TGGTC---GGGGGCA-T-ATAGT---GT-T-T-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCA-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATTca
gi|20870 : CCCCGCC-A-T--A--AA-A-TGGCC---AAGGGCA-TTGTAGT---GT-C-A-C-CCTGTT-T-----A--------CCCT-------GTC-----------C-AT-CA-TCAT-----TTGGTTTCCG--TCA-T-TA-TC-G-CTTG--C-AA-CA-G-TT-GC-A-CACAT
gi|20871 : gGCCCCCGCCCA-T--A--AA-AATGGCC---GGGGGCA-T-ATAGT---GT---A-C-CCTGT-------------------CC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TTGGC-A-CACA
gi|20872 : CCCCGCC-A-T--A--AA-A-TGGC----GGGGGCA-T-ATAGTT--GT-T-A-C-C-TGTT-CC------------------------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-GC-A-CACATT
gi|20873 : gGCCCCCGCC-A-T--A--TA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCAT-----------------TCAT-----TTGGTTTCCG-TTCA-T-TA-TA-T-C-TG--C-AA--G------GC-A-CACATT
gi|20874 : GCCCCCGCC-A-T--A--AA-A-TGGCC---AGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCATTTAAATTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20875 : GCCCCCGCC-A-TTTA--AA-A-TGGCC----GGGGCA-T-ATAGT---GT-T-A-C-CCTTTTCCC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-TC-A-CACAT
gi|20876 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCTG-TTCA-T-TA-TC-T-C-AG--C-AA-CG-G-TT-CA-A-TACATTca
gi|20877 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CATATT-CC-GTCA--------TTCC-------ATTCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-CA-A-CACATT
gi|20878 : CCCCGCC-A-T--A--AA-A-TGGCC---GGGAGC--T-ATAGT---GT-T-A-C-CCTGTT-CC-GTTAT-------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-GCTT-GC-A-CACATT
gi|20879 : gGCCCCCGCC-A-T--A--AA---TGGC------GGGCA-T-ATAGT---GT-T-AAC-CCTGTT-CC--TCA--------TT--------------TC-------C-GT-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TT-T-C-TG--A-AA-CG-G-TT-GC-A-CACATT
gi|20880 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCA--------TTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCTG-TTCA-T-TA-TC-T-T-TG--C-AA-CG-G-TT-CA-A-CACATT
gi|20881 : CCCCGCC-A-T--A--AA-T-TGGCC----GGGGCA-T-ATAGT---GT-T-A-CGGCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGTTTTCCG-TT-A-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GCAA-CGCATT
gi|20882 : gCCCCGCC-A-T--A--AA-T-TGGCC----GGGGCA-T-ATAGT---GT-T-A-CGGCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGTTTTCCG-TT-A-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GCAA-CGCATT
gi|20883 : gCCCCGCC-A-T--A--AA---TGGCC---GGGGACA-T-ATAGT----T-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCTTCC-------C-AT----TCAT-----TTGG-TTCCG-TTCA-T-TA-TCTT-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20884 : gGCCCCCGCC-C-T--A--A----TGGCC---GGG--CAAT-ATAGT---GT-T-G-C-C-TGTT-CC-GT-A--------TTC--------AT--TTC-------C-GT-CAATCAA-----TTG-TTTCGT-TTCA-TGTA-TC-TTC-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20885 : CCCCGCC-A-T--A--AA-A-TG-CC---GGAGGCA-T-ATAGT---GT---A-C-CCATTT-CT-GTCA--------T-CC-------G---------------GT-CA-TCAT-----TTGGTTTCCGTTTCA-T-TA-TC-T-C-TG--C-AACCG-G-TT--C-A-CACAT
gi|20886 : gGCCCCCGCC-A-T--A--AA---TGGCC---GGGGCCA-T-ATAGT---GT-T-A-C-CC-GTT-CC-GTCA--------TTCCTCATTCTGTCATTC-------T-GTTCA-TCAT-----TTGGTTTCCG-GTCA-T-TA-TC-T-C-TG--C-AA-CG-C-TT-GC-A-CACATT
gi|20887 : GCCCCCGCC-A-T--A--AG-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-T----------TTA--------TTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-GA-C----TT-CA-A-CGCATT
gi|20888 : GCCCCCGCC-AAT--A--AA-A-TG-CC---GGGG-CA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCA--------TTC--------GTCATTCGTCTATCC-GT-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20889 : GCCCCCGTC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAAT---GT-T-A-C-CCTGTT-CA-GTCC--------GTCT-------GTCATTC-------C-GT-CA-TGAT-----TTGGTTTCCG-TTCA-T-TA-TC-G-C-TG--C-AA-TG-A-TT-CC-A-CACATT
gi|20890 : CCCCCCCC-A-T--A--AA---TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTTCCGTCCTTGTCCTTC-------C-GT-C--TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-A-TT-GC-A-CACATT
gi|20891 : CCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGTAGTGT-T-A-C-CCTGTT-CT-GTCA--------TTCC-------GTCCTTC-------A-GC-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--T-AA-CG-G-TT-CG-A-CACTTT
gi|20892 : CCCTGCC-A-T--TT-AA-A-TGACCTGAGGGGCCA-T-ATAGT---GA-T-A-T-CCTGT-------------------------------A--C-------C-AT-CA-TCAT-----TGACTTTCCA-TTTA-T-TA-TC-T-C--GACC-AA-CG-G-TT-GC-A-CACATT
gi|20893 : CCCGCC-A-T--A--AA-A-TGGCT---GGGGGCAGT-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCA-TTCATT-TA-TC-T-C-TG--C-AA-CG-G-TT-TTAA-CACATTa
gi|20894 : A-A-TGGCC---GGGCGCA-T-GT--T---GT--------------------A--------TTGT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20895 : atttA-A-TGGCC---GGGGGCA-T-ACTGT---GT-T-A-C-A-TGTA-CC---------------CT-------GT---TC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-TA-A-CACATT
gi|20896 : A-A-TGGCC---GGGG-CA-T-ATAGT---GT-TTA-G-CCTGTT-CC-GTCA--------TTCC---------------------T-GT-CA-TCAT-----TGGTTTTCCG-TTCA-T-TATTC-T-C-TG--C-AA-CG-G-TT-GC-ACCATATT
gi|20897 : A-A-TGGCC---GGGG-CA-T-ATAGT---GT-TTA-G-CCTGTT-CC-GTCA--------TTCC---------------------T-GT-CA-TCAT-----TGGTTTTCCG-TTCA-T-TATTC-T-C-TG--C-AA-CG-G-TT-GC-ACCATATT
gi|20898 : TCC-------C-GT--A-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC---C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20899 : T-CA-TCAT-----TTGTTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20900 : T-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20901 : T-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20902 : TTTCCG-TTCA-T-TA-TC-T-C-TA--C-AA-CG-G-TT-GC-A-CACATT
gi|20903 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20904 : TTTCCA-TTCA-T-TA-TC-T-C-TGG-C-AA-CG-G-TT-GC-A-CACATT
gi|20905 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20906 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATTa
gi|20907 : TTTCCG-TTCA-T-TA-TC-T-C-TA--T-AA-CA-G-TT-GC-A-CACATT
gi|20908 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACAT
gi|20909 : TTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
blockSeqs : G TT TA TGG A C AGT T G TCCGTCATTCTGTCATTCCGTCC GTCTATC TTAAA T T AC T T A C
blockSeqs : A A T TGA A T T T G TCCGTCATTCCTCATTCTGTCA . . T T G C T A C
blockSeqs : . . T TG A . T . . TCCGTCATTTCCGTCCTTGTCC . . . . . . G A .
blockSeqs : . . . T G . . . . TCCGGTCATTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCCGTCATTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTTATTTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCCGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCCGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCCATTC . . . . . . . . .
blockSeqs : . . . . . . . . . TCTGTCATTCCGTCC . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCTGTCT . . . . . . . . .
blockSeqs : . . . . . . . . . TCAGTCCGTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCTGTCATTCCGTCC . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCTTCCGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCTGTCATTCGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTATTCAT . . . . . . . . .
blockSeqs : . . . . . . . . . TCTGTCATCCG . . . . . . . . .
blockSeqs : . . . . . . . . . TTATTCCGTCC . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCC . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCATTCC . . . . . . . . .
blockSeqs : . . . . . . . . . TCCATCATCA . . . . . . . . .
blockSeqs : . . . . . . . . . CCCGTCATTA . . . . . . . . .
blockSeqs : . . . . . . . . . GTTTCCGTCC . . . . . . . . .
blockSeqs : . . . . . . . . . TTACCCTGTC . . . . . . . . .
blockSeqs : . . . . . . . . . ATTGTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCTGTTAT . . . . . . . . .
blockSeqs : . . . . . . . . . TTCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCTGTCCT . . . . . . . . .
blockSeqs : . . . . . . . . . TCCTCATT . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCTGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . TCCGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . ACCCTGT . . . . . . . . .
blockSeqs : . . . . . . . . . CCGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . CCGTCA . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : *** TCCGTCATTCCGTCA*****************
originalCons : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
finalCons : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTTCCGTCATTCCGTCA-----------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
Alignments
lowQualScore : 33333333333333333333333333333333
lowQualScore : 0 1 22 22 0 0 555 4 1 333 0 1 0 1 55555555555555555555555555555555 2222222 0 0 0 11111 1 0 0 1 0 0 0 11 0 0 0 1 1 1 1
lowQualScore : . . .. .. . . ... . . ... . . . . ................................ ....... . . . ..... . . . . . . . .. . . . . . . .
lowQualScore : 9 7 11 99 8 8 888 0 6 000 8 6 8 6 33333333333333333333333333333333 5555555 8 7 7 99999 3 6 6 3 6 6 6 55 6 6 6 3 9 9 3
consensus : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
Reference ( family-325 ) : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20848 : GCCCCTGCC-A-T--T--TA-A-TGACCTG-GAGGGCACT-ATAGT---GA-T-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----TGACTTTCCA-TTCA-T-TA-TC-T-C-GA--C-AA-CA-G-TT-GC-A-CACATT
gi|20849 : GCCCCTGCC-A-T--T--TA-A-TGACCTGGAGGGGCA-T-ATAGT---GA-T-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----TGACTTTCCA-TTCA-T-TA-TC-T-C-GA--C-AA-CA-G-TT-GC-A-CACATTa
gi|20850 : GCCCCTGCC-A-T--T--TA-A-TGACCTG-GAGGGCAAT-ATAGT---GA-T-A-T-CCTGT--------------------------------------------AT-CA-TCAT-----T-GCTTTCCA-TTCA-T-TA-TC---C-GA--C-AA-CA-G-TTTGC-A-CACATTa
gi|20851 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATTa
gi|20852 : GCCCCCACC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATATT---GT-T-A-C-CCTGTT-CT-GTTA--------T---------------------------------CAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20853 : GCCCCTGCC-A-T--A--AA---TGGCC---AGGGCTA-TCATAGT---GT-T-A-C-CCTGTT-----------------TCT-------GTCATTC-------CAGT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20854 : GCC-A-T--TT-AA-A-TGATC---AGTGGCA-T-ATAGT---GAAT-A-T-CCTGTT-CC-ATCA--------T------------CATTG---------GA-CA-T-------------TTCC--TTCA-T-TA-AT-T-C-AA--C-AA-AG-G-TTTGC-A-CACATT
gi|20855 : gcccgtgGCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GC-T-A-C-CCT-T--------------------------------TTC-------C-GT-CA-TCAT-----ATGGTTTCCG-TACA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CATATTa
gi|20856 : GCCCCCGCC-A-T--G--AATA-TGGCC---GAGGGCA---ATAGT---GT-T-A-C-CCTGTT-CC-GTCA------------------------------------T-CA-TTGT-----T---TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT--C-A-CTCA
gi|20857 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20858 : GCCCCCAAC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCA-----------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20859 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGGTTTCCG--TCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-CA-A-CACATT
gi|20860 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CTTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20861 : GCCCCCGCC-A-T--A--AA-A-TGGGC---GGGG-CA-T-ATAGT---GT-T-A-C-CCTGTT--------------------------------TC-------C-GT-CA-TCAT-----TTGGTTGCCG-TTCA-T-TA-TC-T-C-TG----AA-CG-G-TT-GC-A-CACATT
gi|20862 : GCCCCCGCC-AGT--T--AA-A-GGGCCT--GGGGGCA---ATAGT---GT-T-A-C-CCTATC-CC-GTCA--------TT------------A----------------A---AT-----TTGG-TTCCGTTTCA-T-TA-TC-T-C-GG--CTAA-CG-G--T-GC-A-CACAT
gi|20863 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCAAT-ATAGTT--GT-T-A-C-CC--------GT----------TTCC-------GTCCTTC---------GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-GTTT-GT-A-CACATTca
gi|20864 : GCCCCCGCC-A-T--A--AA-A-TTGCT---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCC--------T--------------TTC-------C-GT-CA-TCAT-----TT-TTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CGCG-TT-GC-A-CACATT
gi|20865 : GCCCCCGCC-A-T--ATAAA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCATTCTGTCATTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20866 : GCCCCCGCC-A-TA-A--AA-A-TGGCC---GCGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTC---------TTCC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20867 : CCCCGCC-A-T--A--AA-A-TGGCC---GGG--CA-T-ATAGT---GT-T-A-C-CTTGT-------------------CC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCC--TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20868 : gGCCCCCGCC-A-T--A--AA-A-TGGCC----GGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CCGGTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-GC-A-CACAT
gi|20869 : GCTCCAGCC-A-T--A--AA-A-TGGTC---GGGGGCA-T-ATAGT---GT-T-T-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCA-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATTca
gi|20870 : CCCCGCC-A-T--A--AA-A-TGGCC---AAGGGCA-TTGTAGT---GT-C-A-C-CCTGTT-T-----A--------CCCT-------GTC-----------C-AT-CA-TCAT-----TTGGTTTCCG--TCA-T-TA-TC-G-CTTG--C-AA-CA-G-TT-GC-A-CACAT
gi|20871 : gGCCCCCGCCCA-T--A--AA-AATGGCC---GGGGGCA-T-ATAGT---GT---A-C-CCTGT-------------------CC-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TTGGC-A-CACA
gi|20872 : CCCCGCC-A-T--A--AA-A-TGGC----GGGGGCA-T-ATAGTT--GT-T-A-C-C-TGTT-CC------------------------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-GC-A-CACATT
gi|20873 : gGCCCCCGCC-A-T--A--TA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCC-------GTCAT-----------------TCAT-----TTGGTTTCCG-TTCA-T-TA-TA-T-C-TG--C-AA--G------GC-A-CACATT
gi|20874 : GCCCCCGCC-A-T--A--AA-A-TGGCC---AGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCATTTAAATTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20875 : GCCCCCGCC-A-TTTA--AA-A-TGGCC----GGGGCA-T-ATAGT---GT-T-A-C-CCTTTTCCC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-C--G-TT-TC-A-CACAT
gi|20876 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCTG-TTCA-T-TA-TC-T-C-AG--C-AA-CG-G-TT-CA-A-TACATTca
gi|20877 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CATATT-CC-GTCA--------TTCC-------ATTCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-CA-A-CACATT
gi|20878 : CCCCGCC-A-T--A--AA-A-TGGCC---GGGAGC--T-ATAGT---GT-T-A-C-CCTGTT-CC-GTTAT-------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-GCTT-GC-A-CACATT
gi|20879 : gGCCCCCGCC-A-T--A--AA---TGGC------GGGCA-T-ATAGT---GT-T-AAC-CCTGTT-CC--TCA--------TT--------------TC-------C-GT-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TT-T-C-TG--A-AA-CG-G-TT-GC-A-CACATT
gi|20880 : GCCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCA--------TTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCTG-TTCA-T-TA-TC-T-T-TG--C-AA-CG-G-TT-CA-A-CACATT
gi|20881 : CCCCGCC-A-T--A--AA-T-TGGCC----GGGGCA-T-ATAGT---GT-T-A-CGGCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGTTTTCCG-TT-A-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GCAA-CGCATT
gi|20882 : gCCCCGCC-A-T--A--AA-T-TGGCC----GGGGCA-T-ATAGT---GT-T-A-CGGCTG---------------------------------TTC-------C-GT-CA-TCAT-----TTGTTTTCCG-TT-A-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GCAA-CGCATT
gi|20883 : gCCCCGCC-A-T--A--AA---TGGCC---GGGGACA-T-ATAGT----T-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCTTCC-------C-AT----TCAT-----TTGG-TTCCG-TTCA-T-TA-TCTT-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20884 : gGCCCCCGCC-C-T--A--A----TGGCC---GGG--CAAT-ATAGT---GT-T-G-C-C-TGTT-CC-GT-A--------TTC--------AT--TTC-------C-GT-CAATCAA-----TTG-TTTCGT-TTCA-TGTA-TC-TTC-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20885 : CCCCGCC-A-T--A--AA-A-TG-CC---GGAGGCA-T-ATAGT---GT---A-C-CCATTT-CT-GTCA--------T-CC-------G---------------GT-CA-TCAT-----TTGGTTTCCGTTTCA-T-TA-TC-T-C-TG--C-AACCG-G-TT--C-A-CACAT
gi|20886 : gGCCCCCGCC-A-T--A--AA---TGGCC---GGGGCCA-T-ATAGT---GT-T-A-C-CC-GTT-CC-GTCA--------TTCCTCATTCTGTCATTC-------T-GTTCA-TCAT-----TTGGTTTCCG-GTCA-T-TA-TC-T-C-TG--C-AA-CG-C-TT-GC-A-CACATT
gi|20887 : GCCCCCGCC-A-T--A--AG-A-TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-T----------TTA--------TTCC-------GTCCTTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-GA-C----TT-CA-A-CGCATT
gi|20888 : GCCCCCGCC-AAT--A--AA-A-TG-CC---GGGG-CA-T-ATAGT---GT-T-A-C-CCTGTT-CT-GTCA--------TTC--------GTCATTCGTCTATCC-GT-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TC-T-C-TG--C-AA-TG-G-TT-GC-A-CACATT
gi|20889 : GCCCCCGTC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAAT---GT-T-A-C-CCTGTT-CA-GTCC--------GTCT-------GTCATTC-------C-GT-CA-TGAT-----TTGGTTTCCG-TTCA-T-TA-TC-G-C-TG--C-AA-TG-A-TT-CC-A-CACATT
gi|20890 : CCCCCCCC-A-T--A--AA---TGGCC---GGGGGCA-T-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTTCCGTCCTTGTCCTTC-------C-GT-C--TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-A-TT-GC-A-CACATT
gi|20891 : CCCCCGCC-A-T--A--AA-A-TGGCC---GGGGGCA-T-ATAGTAGTGT-T-A-C-CCTGTT-CT-GTCA--------TTCC-------GTCCTTC-------A-GC-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--T-AA-CG-G-TT-CG-A-CACTTT
gi|20892 : CCCTGCC-A-T--TT-AA-A-TGACCTGAGGGGCCA-T-ATAGT---GA-T-A-T-CCTGT-------------------------------A--C-------C-AT-CA-TCAT-----TGACTTTCCA-TTTA-T-TA-TC-T-C--GACC-AA-CG-G-TT-GC-A-CACATT
gi|20893 : CCCGCC-A-T--A--AA-A-TGGCT---GGGGGCAGT-ATAGT---GT-T-A-C-CCTGTT-CC-GTCA--------TTCT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCA-TTCATT-TA-TC-T-C-TG--C-AA-CG-G-TT-TTAA-CACATTa
gi|20894 : A-A-TGGCC---GGGCGCA-T-GT--T---GT--------------------A--------TTGT-------GTCATTC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20895 : atttA-A-TGGCC---GGGGGCA-T-ACTGT---GT-T-A-C-A-TGTA-CC---------------CT-------GT---TC-------C-GT-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-TA-A-CACATT
gi|20896 : A-A-TGGCC---GGGG-CA-T-ATAGT---GT-TTA-G-CCTGTT-CC-GTCA--------TTCC---------------------T-GT-CA-TCAT-----TGGTTTTCCG-TTCA-T-TATTC-T-C-TG--C-AA-CG-G-TT-GC-ACCATATT
gi|20897 : A-A-TGGCC---GGGG-CA-T-ATAGT---GT-TTA-G-CCTGTT-CC-GTCA--------TTCC---------------------T-GT-CA-TCAT-----TGGTTTTCCG-TTCA-T-TATTC-T-C-TG--C-AA-CG-G-TT-GC-ACCATATT
gi|20898 : TCC-------C-GT--A-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC---C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20899 : T-CA-TCAT-----TTGTTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20900 : T-CA-TCAT-----TTGGTTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20901 : T-CA-TCAT-----TTGGTT-CCG-TTCA-T-TA-TC-T-C-TG--C-AA-CG-G-TT-GC-A-CACATT
gi|20902 : TTTCCG-TTCA-T-TA-TC-T-C-TA--C-AA-CG-G-TT-GC-A-CACATT
gi|20903 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20904 : TTTCCA-TTCA-T-TA-TC-T-C-TGG-C-AA-CG-G-TT-GC-A-CACATT
gi|20905 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT
gi|20906 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATTa
gi|20907 : TTTCCG-TTCA-T-TA-TC-T-C-TA--T-AA-CA-G-TT-GC-A-CACATT
gi|20908 : TTTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACAT
gi|20909 : TTCCG-TTCA-T-TA-TC-T-C-TG--C-AA-CA-G-TT-GC-A-CACATT