lowQualScore : 88 0 0
lowQualScore : .. . .
lowQualScore : 11 4 4
consensus : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
Reference ( gi|52566 ) : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52577 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52574 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52572 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52571 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52569 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52563 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52562 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52560 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52549 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52615 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGGGGTGGGATCAGGTGC
gi|52570 : ATACAAGA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52559 : ATACAAAA-GC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52656 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52655 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACTC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52649 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52648 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52647 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52646 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-TTGGACACACCAGAGGTGGGATCAGGTGC
gi|52641 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52638 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACTC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52630 : ATACAAAA-AC-AAGAATTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52628 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGATCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52627 : ATACAAAA-AC-AAGAGTTGGGCAAACACAGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52626 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52625 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52622 : ATACAAAA-AC-AAGAGTTGGGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52580 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52700 : ATACAAAA-AC-AAGAGTTCGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52699 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTTGGATCAGGTGC
gi|52696 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGATGTGGGATCAGGTGC
gi|52695 : ATACAAAA-AC-AAGAGTTGTGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52694 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGATGTGGGATCAGGTGC
gi|52693 : ATACAAAA-AC-AAGAGTTGGGCAAACAAGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52685 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACAACAGAGGTGGGATCAGGTGC
gi|52684 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCCTCTGGACACACCAGAGGTGGGATCAGGTGC
gi|52617 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCA-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52710 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52709 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52708 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52707 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52705 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52704 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52703 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGAGGGATCAGGTGC
gi|52702 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52579 : ATACAAAA-AC-AAGAGTTGGGCAAACACGAACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52676 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGAGACACCAGAGGTGGGATCAGGTG
gi|52678 : ATACAAAAAAC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52614 : ATACAAAA-AT-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTG
gi|52611 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-TTGGATACACCAGAGGTGGGATCAGGTG
gi|52538 : ATACAAAA--C-AAGAGTTGGGCAAACGCGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52666 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGATCC-CTGGATACACCAGAAGTGGGATCAGGTGC
gi|52664 : ATACAAAA-AC-AAGAGTTGAGCAAATACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52659 : ATACAAAA-AC-AAGAGTTGGGTAAACACGGACCC-CTGGATACACCAGAAGTGGGATCAGGTGC
gi|52548 : ATACAAAA--C-AAGAGTTGGACAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52547 : ATACAAAA--C-AAGAGTTGGGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52546 : ATACAAAA--C-AAAAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52535 : ATACAAAA-G--AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52677 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-ATGGATACACCAGAGGTGGGATCAGGTG
gi|52556 : ATACAAAA--C-ACGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52564 : ATACAAAA--C-AAGAGTTGGGCAAAAACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52586 : ATACAAAA--C-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52683 : ATACAAA---C-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52621 : ATACAAAA-A---AGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGATGGGATCAGGTGC
gi|52536 : ATACAAAA--C-AAGAGTTAGGCGAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52598 : ATACAAAA--C-AAGAGTTGAGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52595 : ATACAAAA--C-AAGAGTTGGACAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52594 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGAACACACCAGAGGTGGGATCAAGTGC
gi|52590 : ATACAAAA--C-AAAAGTTGGGCAAACACGGACCC-CTGGACACACCAAAGGTGGGATCAGGTGC
gi|52533 : ATACAAAA--T-AAGAGTTGGGCAAACACGAACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52675 : ATACAAAA-A--AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCA-GTGC
gi|52616 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGCAGTGGGATCAGGTGC
gi|52658 : ATACAAAA--C-AAGAGTTGGGCAAACACGGATCC-CTGGACACACCAGAGGTGGTATCAGGTGC
gi|52672 : ATACAAAA--C-AAGAGTTGGGCAAATACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTG
gi|52669 : ATACAAAA--C-AAGAGTTGGGTAAACACAGACCC-CTGGACACACCAGAGGTGGGATCAGGTG
gi|52679 : ATACAAAA--C-AAAAGTTGGGCAAACACAGACCC-CTGGACACACCAGAGGTGGAATCAGGTGC
gi|52552 : ATACAAAA--C-AAGAGTTAGGCAAACACGGACCC-CTGGATATACCAGAGGTGGGATCAGGTGC
gi|52554 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGCTG
gi|52674 : ATACAAAA-G--AAGAGTTGGGCAAACACGAACCC-CTGGACACACCAGAGGTGGGATCAGGT
gi|52585 : ATACAAAA--C-AAGAGTTGGGCAAAAACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTAC
gi|52582 : ATACAAAA--C-AAGAGTTGGACAAAAACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52581 : ATACAAAA--C-AAGAGTTGGGCAAACAAGGACCC-CTGGATATACCAGAGGTGGGATCAGGTGC
gi|52534 : ATACAAAA--T-GAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAAGTGC
gi|52599 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGA-GTGGGGTCAGGTGC
gi|52601 : ATACAAAA--C-AAGGGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCATGTG
gi|52588 : ATACAAAA-TA-AAGAGTTGGGCAAACACGGACCC-CTGGATACATCAGAGGTGGGATCAAGTGC
gi|52654 : ATACAAAA--T-AAGAGTTGGGCAAACACGGACCC-CTTGACACATCAGAGGTGGGGTCAGGTGC
gi|52663 : ATACAAAA--C-AAGTGTTGGACAAACACGGACCC-CTGGATACGCCAGAGGTGGGATCAGGTGC
gi|52600 : ATACAAAA--T-AAAGGTTGGGCAAACACGAACCC-TTGGATACACCAGAGGTGGGATCAGGTGC
gi|52607 : ATACAAAA--T-AAGAGTTGGGCAAATACGGACCC-CTGGATACACCAAAAGTGGGATCAGGT
gi|52673 : ATACAAAA--T-AAGAGATGGGCAAACATGGATCC-CTGGATACACCAGAGGTGGGATCAAGTGC
gi|53084 : ATAAAATAC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52608 : ATAAAA-ATTAAGAGTTGGACAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|53118 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTG
gi|52589 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAAGTGGGATCAGGTGC
gi|53111 : atgcAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|53110 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGTGATCAGGTGC
gi|52662 : AAA-AT-AAAAGTTGGGCAAACGCGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|53097 : attcAAA-AC-AAGAGTTAGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGATGC
gi|52667 : cAAA-AT-AAGAGATGGACAAACACGGACTC-CTGGATACACCAGAGGTGGGATCAGGTGC
Alignments
lowQualScore : 77 0 0
lowQualScore : .. . .
lowQualScore : 99 4 4
consensus : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
Reference ( family-30 ) : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52533 : ATACAAAA--T-AAGAGTTGGGCAAACACGAACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52534 : ATACAAAA--T-GAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAAGTGC
gi|52535 : ATACAAAA-G--AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52536 : ATACAAAA--C-AAGAGTTAGGCGAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52538 : ATACAAAA--C-AAGAGTTGGGCAAACGCGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52546 : ATACAAAA--C-AAAAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52547 : ATACAAAA--C-AAGAGTTGGGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52548 : ATACAAAA--C-AAGAGTTGGACAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52549 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52552 : ATACAAAA--C-AAGAGTTAGGCAAACACGGACCC-CTGGATATACCAGAGGTGGGATCAGGTGC
gi|52554 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGCTG
gi|52556 : ATACAAAA--C-ACGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52559 : ATACAAAA-GC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52560 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52562 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52563 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52564 : ATACAAAA--C-AAGAGTTGGGCAAAAACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52566 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52569 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52570 : ATACAAGA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52571 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52572 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52574 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52577 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52579 : ATACAAAA-AC-AAGAGTTGGGCAAACACGAACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52580 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52581 : ATACAAAA--C-AAGAGTTGGGCAAACAAGGACCC-CTGGATATACCAGAGGTGGGATCAGGTGC
gi|52582 : ATACAAAA--C-AAGAGTTGGACAAAAACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52585 : ATACAAAA--C-AAGAGTTGGGCAAAAACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTAC
gi|52586 : ATACAAAA--C-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52588 : ATACAAAA-TA-AAGAGTTGGGCAAACACGGACCC-CTGGATACATCAGAGGTGGGATCAAGTGC
gi|52589 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAAGTGGGATCAGGTGC
gi|52590 : atgcATACAAAA--C-AAAAGTTGGGCAAACACGGACCC-CTGGACACACCAAAGGTGGGATCAGGTGC
gi|52594 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGAACACACCAGAGGTGGGATCAAGTGC
gi|52595 : ATACAAAA--C-AAGAGTTGGACAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52598 : ATACAAAA--C-AAGAGTTGAGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52599 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGA-GTGGGGTCAGGTGC
gi|52600 : ATACAAAA--T-AAAGGTTGGGCAAACACGAACCC-TTGGATACACCAGAGGTGGGATCAGGTGC
gi|52601 : ATACAAAA--C-AAGGGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCATGTG
gi|52607 : ATACAAAA--T-AAGAGTTGGGCAAATACGGACCC-CTGGATACACCAAAAGTGGGATCAGGT
gi|52608 : ATAAAA-ATTAAGAGTTGGACAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52611 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-TTGGATACACCAGAGGTGGGATCAGGTG
gi|52614 : ATACAAAA-AT-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTG
gi|52615 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGGGGTGGGATCAGGTGC
gi|52616 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGCAGTGGGATCAGGTGC
gi|52617 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCA-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52621 : ATACAAAA-A---AGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGATGGGATCAGGTGC
gi|52622 : ATACAAAA-AC-AAGAGTTGGGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52625 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52626 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52627 : ATACAAAA-AC-AAGAGTTGGGCAAACACAGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52628 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGATCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52630 : ATACAAAA-AC-AAGAATTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52638 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACTC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52641 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52646 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-TTGGACACACCAGAGGTGGGATCAGGTGC
gi|52647 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52648 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52649 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52654 : ATACAAAA--T-AAGAGTTGGGCAAACACGGACCC-CTTGACACATCAGAGGTGGGGTCAGGTGC
gi|52655 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACTC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52656 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52658 : ATACAAAA--C-AAGAGTTGGGCAAACACGGATCC-CTGGACACACCAGAGGTGGTATCAGGTGC
gi|52659 : ATACAAAA-AC-AAGAGTTGGGTAAACACGGACCC-CTGGATACACCAGAAGTGGGATCAGGTGC
gi|52662 : AAA-AT-AAAAGTTGGGCAAACGCGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52663 : attcATACAAAA--C-AAGTGTTGGACAAACACGGACCC-CTGGATACGCCAGAGGTGGGATCAGGTGC
gi|52664 : ATACAAAA-AC-AAGAGTTGAGCAAATACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52666 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGATCC-CTGGATACACCAGAAGTGGGATCAGGTGC
gi|52667 : AAA-AT-AAGAGATGGACAAACACGGACTC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52669 : atgcATACAAAA--C-AAGAGTTGGGTAAACACAGACCC-CTGGACACACCAGAGGTGGGATCAGGTG
gi|52672 : ATACAAAA--C-AAGAGTTGGGCAAATACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTG
gi|52673 : ATACAAAA--T-AAGAGATGGGCAAACATGGATCC-CTGGATACACCAGAGGTGGGATCAAGTGC
gi|52674 : ATACAAAA-G--AAGAGTTGGGCAAACACGAACCC-CTGGACACACCAGAGGTGGGATCAGGT
gi|52675 : ATACAAAA-A--AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCA-GTGC
gi|52676 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGAGACACCAGAGGTGGGATCAGGTG
gi|52677 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-ATGGATACACCAGAGGTGGGATCAGGTG
gi|52678 : ATACAAAAAAC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52679 : ATACAAAA--C-AAAAGTTGGGCAAACACAGACCC-CTGGACACACCAGAGGTGGAATCAGGTGC
gi|52683 : ATACAAA---C-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52684 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCCTCTGGACACACCAGAGGTGGGATCAGGTGC
gi|52685 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACAACAGAGGTGGGATCAGGTGC
gi|52693 : ATACAAAA-AC-AAGAGTTGGGCAAACAAGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52694 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGATGTGGGATCAGGTGC
gi|52695 : ATACAAAA-AC-AAGAGTTGTGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52696 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGATGTGGGATCAGGTGC
gi|52699 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTTGGATCAGGTGC
gi|52700 : ATACAAAA-AC-AAGAGTTCGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52702 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52703 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGAGGGATCAGGTGC
gi|52704 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52705 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52707 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52708 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52709 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52710 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|53084 : ATAAAATAC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|53097 : AAA-AC-AAGAGTTAGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGATGC
gi|53110 : cAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGTGATCAGGTGC
gi|53111 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|53118 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTG
Alignments
lowQualScore : 77 0 0
lowQualScore : .. . .
lowQualScore : 99 4 4
consensus : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
Reference ( family-30 ) : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52533 : ATACAAAA--T-AAGAGTTGGGCAAACACGAACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52534 : ATACAAAA--T-GAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAAGTGC
gi|52535 : ATACAAAA-G--AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52536 : ATACAAAA--C-AAGAGTTAGGCGAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52538 : ATACAAAA--C-AAGAGTTGGGCAAACGCGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52546 : ATACAAAA--C-AAAAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52547 : ATACAAAA--C-AAGAGTTGGGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52548 : ATACAAAA--C-AAGAGTTGGACAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52549 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52552 : ATACAAAA--C-AAGAGTTAGGCAAACACGGACCC-CTGGATATACCAGAGGTGGGATCAGGTGC
gi|52554 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGCTG
gi|52556 : ATACAAAA--C-ACGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52559 : ATACAAAA-GC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52560 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52562 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52563 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52564 : ATACAAAA--C-AAGAGTTGGGCAAAAACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52566 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52569 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52570 : ATACAAGA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52571 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52572 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52574 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52577 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52579 : ATACAAAA-AC-AAGAGTTGGGCAAACACGAACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52580 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52581 : ATACAAAA--C-AAGAGTTGGGCAAACAAGGACCC-CTGGATATACCAGAGGTGGGATCAGGTGC
gi|52582 : ATACAAAA--C-AAGAGTTGGACAAAAACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52585 : ATACAAAA--C-AAGAGTTGGGCAAAAACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTAC
gi|52586 : ATACAAAA--C-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52588 : ATACAAAA-TA-AAGAGTTGGGCAAACACGGACCC-CTGGATACATCAGAGGTGGGATCAAGTGC
gi|52589 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAAGTGGGATCAGGTGC
gi|52590 : atgcATACAAAA--C-AAAAGTTGGGCAAACACGGACCC-CTGGACACACCAAAGGTGGGATCAGGTGC
gi|52594 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGAACACACCAGAGGTGGGATCAAGTGC
gi|52595 : ATACAAAA--C-AAGAGTTGGACAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52598 : ATACAAAA--C-AAGAGTTGAGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52599 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGA-GTGGGGTCAGGTGC
gi|52600 : ATACAAAA--T-AAAGGTTGGGCAAACACGAACCC-TTGGATACACCAGAGGTGGGATCAGGTGC
gi|52601 : ATACAAAA--C-AAGGGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCATGTG
gi|52607 : ATACAAAA--T-AAGAGTTGGGCAAATACGGACCC-CTGGATACACCAAAAGTGGGATCAGGT
gi|52608 : ATAAAA-ATTAAGAGTTGGACAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52611 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-TTGGATACACCAGAGGTGGGATCAGGTG
gi|52614 : ATACAAAA-AT-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTG
gi|52615 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGGGGTGGGATCAGGTGC
gi|52616 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGCAGTGGGATCAGGTGC
gi|52617 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCA-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52621 : ATACAAAA-A---AGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGATGGGATCAGGTGC
gi|52622 : ATACAAAA-AC-AAGAGTTGGGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52625 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52626 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52627 : ATACAAAA-AC-AAGAGTTGGGCAAACACAGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52628 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGATCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52630 : ATACAAAA-AC-AAGAATTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52638 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACTC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52641 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52646 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-TTGGACACACCAGAGGTGGGATCAGGTGC
gi|52647 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52648 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52649 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52654 : ATACAAAA--T-AAGAGTTGGGCAAACACGGACCC-CTTGACACATCAGAGGTGGGGTCAGGTGC
gi|52655 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACTC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52656 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52658 : ATACAAAA--C-AAGAGTTGGGCAAACACGGATCC-CTGGACACACCAGAGGTGGTATCAGGTGC
gi|52659 : ATACAAAA-AC-AAGAGTTGGGTAAACACGGACCC-CTGGATACACCAGAAGTGGGATCAGGTGC
gi|52662 : AAA-AT-AAAAGTTGGGCAAACGCGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52663 : attcATACAAAA--C-AAGTGTTGGACAAACACGGACCC-CTGGATACGCCAGAGGTGGGATCAGGTGC
gi|52664 : ATACAAAA-AC-AAGAGTTGAGCAAATACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52666 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGATCC-CTGGATACACCAGAAGTGGGATCAGGTGC
gi|52667 : AAA-AT-AAGAGATGGACAAACACGGACTC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52669 : atgcATACAAAA--C-AAGAGTTGGGTAAACACAGACCC-CTGGACACACCAGAGGTGGGATCAGGTG
gi|52672 : ATACAAAA--C-AAGAGTTGGGCAAATACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTG
gi|52673 : ATACAAAA--T-AAGAGATGGGCAAACATGGATCC-CTGGATACACCAGAGGTGGGATCAAGTGC
gi|52674 : ATACAAAA-G--AAGAGTTGGGCAAACACGAACCC-CTGGACACACCAGAGGTGGGATCAGGT
gi|52675 : ATACAAAA-A--AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCA-GTGC
gi|52676 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGAGACACCAGAGGTGGGATCAGGTG
gi|52677 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-ATGGATACACCAGAGGTGGGATCAGGTG
gi|52678 : ATACAAAAAAC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52679 : ATACAAAA--C-AAAAGTTGGGCAAACACAGACCC-CTGGACACACCAGAGGTGGAATCAGGTGC
gi|52683 : ATACAAA---C-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52684 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCCTCTGGACACACCAGAGGTGGGATCAGGTGC
gi|52685 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACAACAGAGGTGGGATCAGGTGC
gi|52693 : ATACAAAA-AC-AAGAGTTGGGCAAACAAGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52694 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGATGTGGGATCAGGTGC
gi|52695 : ATACAAAA-AC-AAGAGTTGTGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52696 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGATGTGGGATCAGGTGC
gi|52699 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTTGGATCAGGTGC
gi|52700 : ATACAAAA-AC-AAGAGTTCGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52702 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52703 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGAGGGATCAGGTGC
gi|52704 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52705 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52707 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52708 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52709 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52710 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|53084 : ATAAAATAC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|53097 : AAA-AC-AAGAGTTAGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGATGC
gi|53110 : cAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGTGATCAGGTGC
gi|53111 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|53118 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTG
blockSeqs : AA
blockSeqs : TA
blockSeqs : G
blockSeqs : A
blockSeqs : G
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : T
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : G
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons : A*
originalCons : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
finalCons : ATACAAAAA-C-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
Alignments
lowQualScore : 77 0 0
lowQualScore : .. . .
lowQualScore : 99 4 4
consensus : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
Reference ( family-30 ) : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52533 : ATACAAAA--T-AAGAGTTGGGCAAACACGAACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52534 : ATACAAAA--T-GAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAAGTGC
gi|52535 : ATACAAAA-G--AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52536 : ATACAAAA--C-AAGAGTTAGGCGAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52538 : ATACAAAA--C-AAGAGTTGGGCAAACGCGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52546 : ATACAAAA--C-AAAAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52547 : ATACAAAA--C-AAGAGTTGGGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52548 : ATACAAAA--C-AAGAGTTGGACAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52549 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52552 : ATACAAAA--C-AAGAGTTAGGCAAACACGGACCC-CTGGATATACCAGAGGTGGGATCAGGTGC
gi|52554 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGCTG
gi|52556 : ATACAAAA--C-ACGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52559 : ATACAAAA-GC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52560 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52562 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52563 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52564 : ATACAAAA--C-AAGAGTTGGGCAAAAACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52566 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52569 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52570 : ATACAAGA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52571 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52572 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52574 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52577 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52579 : ATACAAAA-AC-AAGAGTTGGGCAAACACGAACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52580 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52581 : ATACAAAA--C-AAGAGTTGGGCAAACAAGGACCC-CTGGATATACCAGAGGTGGGATCAGGTGC
gi|52582 : ATACAAAA--C-AAGAGTTGGACAAAAACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52585 : ATACAAAA--C-AAGAGTTGGGCAAAAACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTAC
gi|52586 : ATACAAAA--C-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52588 : ATACAAAA-TA-AAGAGTTGGGCAAACACGGACCC-CTGGATACATCAGAGGTGGGATCAAGTGC
gi|52589 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAAGTGGGATCAGGTGC
gi|52590 : atgcATACAAAA--C-AAAAGTTGGGCAAACACGGACCC-CTGGACACACCAAAGGTGGGATCAGGTGC
gi|52594 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGAACACACCAGAGGTGGGATCAAGTGC
gi|52595 : ATACAAAA--C-AAGAGTTGGACAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52598 : ATACAAAA--C-AAGAGTTGAGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52599 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGA-GTGGGGTCAGGTGC
gi|52600 : ATACAAAA--T-AAAGGTTGGGCAAACACGAACCC-TTGGATACACCAGAGGTGGGATCAGGTGC
gi|52601 : ATACAAAA--C-AAGGGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCATGTG
gi|52607 : ATACAAAA--T-AAGAGTTGGGCAAATACGGACCC-CTGGATACACCAAAAGTGGGATCAGGT
gi|52608 : ATAAAA-ATTAAGAGTTGGACAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52611 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-TTGGATACACCAGAGGTGGGATCAGGTG
gi|52614 : ATACAAAA-AT-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTG
gi|52615 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGGGGTGGGATCAGGTGC
gi|52616 : ATACAAAA--C-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGCAGTGGGATCAGGTGC
gi|52617 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCA-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52621 : ATACAAAA-A---AGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGATGGGATCAGGTGC
gi|52622 : ATACAAAA-AC-AAGAGTTGGGCAAACATGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52625 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52626 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52627 : ATACAAAA-AC-AAGAGTTGGGCAAACACAGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52628 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGATCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52630 : ATACAAAA-AC-AAGAATTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52638 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACTC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52641 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52646 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-TTGGACACACCAGAGGTGGGATCAGGTGC
gi|52647 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52648 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52649 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACATACCAGAGGTGGGATCAGGTGC
gi|52654 : ATACAAAA--T-AAGAGTTGGGCAAACACGGACCC-CTTGACACATCAGAGGTGGGGTCAGGTGC
gi|52655 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACTC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52656 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52658 : ATACAAAA--C-AAGAGTTGGGCAAACACGGATCC-CTGGACACACCAGAGGTGGTATCAGGTGC
gi|52659 : ATACAAAA-AC-AAGAGTTGGGTAAACACGGACCC-CTGGATACACCAGAAGTGGGATCAGGTGC
gi|52662 : AAA-AT-AAAAGTTGGGCAAACGCGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52663 : attcATACAAAA--C-AAGTGTTGGACAAACACGGACCC-CTGGATACGCCAGAGGTGGGATCAGGTGC
gi|52664 : ATACAAAA-AC-AAGAGTTGAGCAAATACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52666 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGATCC-CTGGATACACCAGAAGTGGGATCAGGTGC
gi|52667 : AAA-AT-AAGAGATGGACAAACACGGACTC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|52669 : atgcATACAAAA--C-AAGAGTTGGGTAAACACAGACCC-CTGGACACACCAGAGGTGGGATCAGGTG
gi|52672 : ATACAAAA--C-AAGAGTTGGGCAAATACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTG
gi|52673 : ATACAAAA--T-AAGAGATGGGCAAACATGGATCC-CTGGATACACCAGAGGTGGGATCAAGTGC
gi|52674 : ATACAAAA-G--AAGAGTTGGGCAAACACGAACCC-CTGGACACACCAGAGGTGGGATCAGGT
gi|52675 : ATACAAAA-A--AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCA-GTGC
gi|52676 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGAGACACCAGAGGTGGGATCAGGTG
gi|52677 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-ATGGATACACCAGAGGTGGGATCAGGTG
gi|52678 : ATACAAAAAAC-AAGAGTTGGGCAAACACGGACCC-CTGGACACATCAGAGGTGGGATCAGGTGC
gi|52679 : ATACAAAA--C-AAAAGTTGGGCAAACACAGACCC-CTGGACACACCAGAGGTGGAATCAGGTGC
gi|52683 : ATACAAA---C-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAAGTGC
gi|52684 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCCTCTGGACACACCAGAGGTGGGATCAGGTGC
gi|52685 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACAACAGAGGTGGGATCAGGTGC
gi|52693 : ATACAAAA-AC-AAGAGTTGGGCAAACAAGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52694 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGATGTGGGATCAGGTGC
gi|52695 : ATACAAAA-AC-AAGAGTTGTGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52696 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGATGTGGGATCAGGTGC
gi|52699 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTTGGATCAGGTGC
gi|52700 : ATACAAAA-AC-AAGAGTTCGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52702 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52703 : ATACAAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGAGGGATCAGGTGC
gi|52704 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52705 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52707 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52708 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52709 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|52710 : ATACAAAA-AC-AAGAGTTGGGCAATCACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTGC
gi|53084 : ATAAAATAC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|53097 : AAA-AC-AAGAGTTAGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGATGC
gi|53110 : cAAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGTGATCAGGTGC
gi|53111 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGATACACCAGAGGTGGGATCAGGTGC
gi|53118 : AAA-AC-AAGAGTTGGGCAAACACGGACCC-CTGGACACACCAGAGGTGGGATCAGGTG