lowQualScore : 0 0 0 0 3 11 44 1 333333 1111111 0 111 0 11 00 0 0
lowQualScore : . . . . . .. .. . ...... ....... . ... . .. .. . .
lowQualScore : 4 4 4 4 9 11 77 2 000000 3333333 4 999 4 00 66 5 6
consensus : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAGG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
Reference ( gi|2911 ) : GGGCGAA-G-CC-CCC-GGAAACT--GA-AAGG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|2922 : GGGCAAA-G-CC-CCC-GGGAACT--GA-AAGG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|2936 : GGGCGAA-T-CT-CCC-GGAAACT--GA-AAGG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGag
gi|2943 : GGGCAAA-G-CC-CCC-GGAAACT--GA-AAGG-TTT------T-------AG-CA---T-T--TTCA--TT-G-G-TCTG
gi|2933 : GGGCGAA-T-TC-CCC-GGAAGCT--GA-AAGG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTgag
gi|2910 : GGGCAAA-G-TC-CCC-GGAAGCT--GA-GAGG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTaagg
gi|2944 : GGGCGAA-G--C-CCC-GGAAACT--GA-AAGGTTTT------T-------AG-CA---T-T--TTCA--CTGG-G-TCTGaggg
gi|2914 : GGGCGAA-G-CC-CTC-GAAAGCT--GA-GAGG-TTT------T-------AG-CA---T-T--TTCA--TCGG-G-TCTG
gi|2921 : GGACGAA-G-CC-TTC-GGAAACT--GA-GAGG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCCGg
gi|2913 : GGGCGAA-G-CC-CCC-GGAAACT--GA-GAGG-TTT------T-------AG-CA---T-T--TTC---TTGG-G-CCCGggg
gi|2919 : GGGCGAA-G-CC-CCC-AGAAGCT--GA-GAGA-TTT------T-------AG-CA---T-T--TTCT--TTGG-G-TCTG
gi|2954 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-AAGG-TTT------T-------GG-CA---T-T--TTCA--TT
gi|2912 : GGGTGAA-G-CC-CCC-GGAAACT--GA-GGGG-GTT------T-------AG-CA---T-T--TTCA--TTGA-G-TCT
gi|2925 : GGGCGAA-G-CC-CTT-GGAAGCG--GA-GAGG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTagggg
gi|2929 : GGGCGAA-G-CC-CCC-GGAG-CT--GA-GAGA-TTT------T-------AG-CA---T-T--TTTA--TTGG-G-TCTGagagg
gi|2946 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAGG-ATT------T-------AG-CA---T-T--TTCA--TTGC-T-TCTG
gi|2956 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-CAGG-TTT------T-------AG-CA---C-TTATTCA--TTGG-G-TTTtggg
gi|2971 : GGGCAAA-G-CC-CCC-GGAAGCT--GA-AAGG-TTT------T-------AA-CA---T-T--TTCA--TTctgggag
gi|2924 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAGG-GTT------T-------AG-TA---T-T--TCCA--TTGC-G-TCTG
gi|2957 : GGGCGAA-G-CC-CCC-GGAAGTT--GA-AAGATTTT------T-------AG-CA---T-T--TTCG--TTGG-G-TATGggg
gi|2940 : GGGCGAA-G-CC-CCC-TGAAGCT--GA-GAGA-TTT------T-------AG-CA---C-T--TTCT--TTGG-G-TCTGggg
gi|2915 : GGGCGAA-G-CC-CCC-GGAAGAT--GA-GAAA-TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGgagg
gi|2963 : GGGCGAA-G-CC-CCA-GGAAGCT--GA-AAGG-TTT------T-------GG-CA---T-T--TTCA--TTgggg
gi|2973 : GGGTGAA-G-CC-TCC-GGAAGCT--GA-AAGA-TTT------C-------AG-CA---T-T--TGTA--TTGG-G-TCTG
gi|3012 : GGGCGAA-G-TC-CCC-G-AAATT--GA-AAGG-TTT------C-------GG-CA---T-T--TTCA--TTGG-T-TCTGgg
gi|2934 : GGGCAAA-G-CC-CCC-GGAAGCT--GA-GAAA-TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCggag
gi|2926 : GGGCGAA-GTCC-CCC-GGACGCT--GA-GATG-TTT------T-------AG-CA---T-T--TTTA--TTGG-G-TCTGgggggg
gi|2972 : GGGCGAC-G-CC-CCC-GGGAGTT--GA-AAGT-TTT------T-------AG-CA---T-T--TTCA--TAGG-G-TCTGgggg
gi|2947 : GGGCGAA-G-TC-CTC-GAAAGCT--GA-AAGA-TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TC
gi|2951 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAAA-TTT------T-------AG-CA-----T--TTCA--TTGC-G-TCTGgggggg
gi|2930 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAAA-TTT------T-------AG-CA---T-T--TTC---TTGC-G-TCTGgg
gi|2927 : GGGCGAA-G-CC-TCC-GGAAGCT--GA-GAGG-TTT------T-------GG-CA---T-T--TTCA--TTgggg
gi|2945 : GGACGAA-G-CC-CCC-GGGAACT--GA-GAGA-TTT------T-------AA-CA-----T--TTCA--TTGG-G-TCCG
gi|2961 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GATT-TTT------T-------AG-CA---T-T--TTCA--TGGG-G-TGTGggg
gi|2941 : GGGCGAA-G-CC-CCC-GGAAACT--GA-GAGG-CTT------T-------AG-CA---T-T--TTgag
gi|2962 : GGGCGAA-G-CC-CCC-GGAGGCT--GA-GAGG-TTT------G-------GA-CA---T-T--TTCA--TGGG-G-TCT
gi|2966 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAGG-TTT------T-------GG-GA---T-T--TTCA--TTagag
gi|2965 : GGGCGAA-G-CC-CGC-GGAAGCT--GA-GAGG-TTT------T-------AG-CG---T-T--TTCA--TT
gi|2937 : GGGCAAA-G-CC-CCA-GGAAGCT--GA-GAGG-TTT------T-------AG-CA---T-T--TTCA--TTTG-G-
gi|2948 : GGACAAA-G-CC-CCC-GGAGGCC--GA-GAGG-TTT------T-------AG-CA---T-T--TTTA--TTGT-G-TCTGaaatggggg
gi|2964 : GGGCGAG-G-CG-CCC-GAAAGCT--GA-GAAA-TTT------T-------AG-TA---T-T--TTCA--TTGG-G-TCTGgggg
gi|2959 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAAA-TTT------T-------AG-CA---T-T--TTCA--Tg
gi|2992 : GGCCAAA-G-CC-CCC-AGAAACT--GA-GATG-TTT------T-------AG-CA---T-T--TTCA--TTGT-G-TCCGgctctagggg
gi|2974 : GAGCGAA-G-CC-CCC-GGAAGCT--GAGAGGG-TTTACATG-T-------AG-CA---T-T--TTCA--TTGG-G-CCTggg
gi|2969 : GGGCGAA-G-CC-CC--GGAAGCT--GA-GATA-TTT------T-------AG-CA---T-T--TTCA---TGG-G-TCTG
gi|2916 : GGGCGAA-G-CC-CCC-GGAAGCTACGA-AATG---T------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGgagg
gi|2931 : GGGCGAA-G-CC-CCC-GTAAGCT--AA-GAAA-TTT------T-------AG-CA---C-T--TTCA--TTGC-G-TCTGgggg
gi|2949 : GGGCGAA-G-CC-CCC-AGAAACT--TA-GAGA-TTT------T-------AG-CA---T-T--TTTA--TTgggg
gi|2985 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAGG-ATT------T-------AA-CA---T-T--TTTA--TT
gi|2958 : GGGCGAA-A-CC-CCC-GAAAGCT--GA-GAGG-TTT------A-------AG-CA---T-T--TTCA--TT
gi|2991 : GGGCGAA-T-CC-CCC-GGAAGCT--TA-GAGG-TTT------T-------AG-CA---T-T--TTCA--TAGG-
gi|2975 : GGGCGAA-G-CT-CCC-GGAAGCT--GA-GATA-TTT------T-------AT-CAT--T-T--TTCA--TTGG-G-TCCGactggagg
gi|2993 : GGACGAA-G-CC-CCC-GAAAGCT--GA-GAGG-TTT------T-------AG-CA---T-T--TTCgg
gi|2979 : GGGCGAA-G-CC-CCG-GAAAGCT--AA-CAAA-TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTG
gi|2988 : GGGCGAA-G-CC-CC--GGAAGCC--CA-GAAA-TTT------T-------AG-CA---T-T--TTCA--TTGG-A-TCTGgggg
gi|3003 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AAAT-TTT------T-------AG-CA---T-T--TTTA--TTGgagg
gi|2994 : GGGTGAA-G-TC-CCC-GGAAGCT--GA-GAGG-TTT------T-------AG-TA---T-T--TTCG--TTcatcgggg
gi|3001 : GGGCGAAAG-GC-CCC-GGGGGCT--GA-GAGG-TTT------T-------GG-CAT--T-T--TTCA--TTGG-G-TCT
gi|2995 : GGGCGAA-G-CC-CCC-AGAAGCC--GA-GAGG-TTT------T-------AG-CA---T-C--TTCA--ag
gi|3010 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAGC-TTT------TTTTAATAAG-CA---T-T--TTCA---TAG-G-TCTG
gi|2984 : GGGCGAA-G-CC-CCC-GGAAGCT--TA-GA-A-TTT------T-------AG-CA---T-T--TTCA--T--G-G-TCTaagg
gi|2987 : GGGCGTA-A-CC-CCC-ATACGCT--GA-CAAG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGaggg
gi|3011 : GGGCGAA-G-CC-CCC-GGAAGCT--GA-GAGA-CTTTTTTAAT-------AG-CA---T-T--TTCA--TAGG-GTTCTGg
gi|3017 : GGGCGAG-G-CC-CCT-GGAAGCT--GA-TATA-TTT------T-------AG-CA---T-T--TACA--TTGA-G-TCTaagg
gi|2983 : GGGCGAA-G--C-CCC-GGAAGCT--GA-GAAA-TTT------T-------AGCCG---T-T--TTCA--TTGC-G-TCTGtggg
gi|2980 : GGGCGAA-G-CC-CCC-AGAAGAT--GAGAAAT-TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCggg
gi|3004 : GGGCGAA-G-CT-CC--GGAAGCT--GA-GAGA-TTT--------------AG-CA---T-T--TTC---TTGG-G-TCTGctggggg
gi|2999 : GGGCAAA-G-GC-CCC-GGAAGCT--AA-GATA-TTT------T-------AG-CA---T-T--TTCA--GTGG-G-CCTGg
gi|3007 : GGGCGAA-G-TC-CCC-GGAAGCT--GA-GAGG-TTT------T-------AG-CA---T-T--ggag
gi|2978 : GGGCGAA-C-CC-TCC-AGAAGCT--GA-GAGA-TTT------T-------TG-CA---T-T--TTCG--TTGC-G-TCTG
gi|2955 : GGGCGAA-G-GA-ACC-GGAAGCT--GA-GATA-TTT------T-------AG-CA---T-T--TTCA--TGGG-G-TCTGgggg
gi|3000 : GGGCGAA-G-CC-TCT-GGAGGCT--GG-GAGG-TTT------T-------AG-CA---T-T--TTTA--TTgag
gi|3008 : GGGCGAA-G-CC-CGC-GGAAGCT--GA-GCGG-TTT------T-------AG-TG---T-T--TTCA--TT
gi|2970 : GAGCGAA-G-CC-CCC-GGAAGCT--GA-GAGT-TTT------G-------GG-CA---T-T--TTCA--TT
gi|3020 : GGGCGAA-G-TC-CCC-G-AAACT--GA-GAGG-TTT------T-------AA-CACTGT-T--TTCAATTTGG-G-T
gi|3013 : GGGCGAA-G-CC-CCC-GG-AGCT--GA-GTGGAGTT------T-------AG-CA---T-T--TTCA--TTGGCG-TCTtcctggggg
gi|2996 : GGGCGAA-G-CC-CC--GAAAGCT--GA-GAAA-TTT------T-------AG-CA-----T--TTCA--TTGC-G-TCTGtggg
gi|2968 : GGGGGAA-G-CC-CCCCAGAAGCT--GA-GAGA-TTT------T-------AT-CA---T-T--TTCA--TTGG-G-ggg
gi|2998 : GGGCGAA-A-CC-CCG-AAAAGCT--GA-GAGA-TTT------T-------AG-CA---T-T--TCCA--TTGC-G-TTTG
gi|3002 : GGGCGAA-G-CC-CC--GGAAGCT--GA-GAAG--TT------T-------GG-CA---T-T--TTCA--TTGG-ggg
gi|3015 : GGGCGAA-G-CG-CCC-GGAAGCT--GA-GAGA-TTT------T-------AG-CA---T-C--TTTA--CTactggagg
gi|3018 : GGGGGAA-G-CC-CCC-GGAAGCT--GAGAAAA-TTT------T--------G-CA---T-TG-TTCA--TTGC-G-TCTG
gi|3014 : GGACGAA-G-CC-CC--GAAAGCT--GA-GAGA-TTT--------------AG-CA---T-T--TTCA--TTGC-G-TCgg
gi|3016 : GGGTGAA-G-CAACCC-GGAAGCT--GA-GAGA-TTT------T-------AG-TAT--T-T--TTTA--TTGC-G-TCTGgggggg
gi|3060 : GGCAAA-G-CT-CCC-GGAAGCT--AA-GAGA-TTT------T-------AG-CA---T-T--TTCG--TTGG-G-TCTGggg
gi|3063 : GGCGAA-G-CC-CCC-GGAAGCT--GA-GAGT-TTT------T-------AG-CA---T-T--TTGA--TTgggg
gi|3062 : GGCGAA-G-CC-CCC-GGAAGCT--GA-GAGT-TTT------T-------AG-CA---T-T--TTGA--TT
gi|3067 : GGCGAA-G-CC-CCC-GTAAGCT--GA-GAGA-TTT------T-------GG-CA---T-T--TTCA--TT
gi|3065 : GACGAA-G-CC-CC--GGAAGCT--GA-GAGG-TCT------T-------AG-CA---T-T--TTCA--TTttgaaattggggg
gi|3064 : GGCGAA-G-CC-CCT-TGAAGCT--GA-GAGG-TTT------T-------AT-CA---T-T--TGCA--TTGG-A-T
gi|3068 : GGGGAA-G-CC-CCC-G-AAGCT--GA-GAGG-TTT------T-------AG-TA---T-T--TTCA--TTgtagg
gi|3066 : GGAGAA-A-CC-CC--GGAAGCT--AA-GAAA-TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTG
gi|3076 : GCGAA---TC-TCC-GGAAACT--GA-A-GG-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGggg
gi|3077 : GCGAA-G-CC-CCC-GGAAGCT--GA-GAGG-TTT------T-------AG-CA---T-T--TTCT--TT
gi|3078 : GCGAA-G-CT-CCC-GGAAGCT--TG-GAGA-ATT------T-------AG-CA---TCT--TTCA--TTGG-G-TTTG
gi|3088 : AA-G-CC-CCC-GGAAACA--GA-GAGA-TTT------T-------AG-CA---T-T--TTCT--TTGG-G-TCTGggg
gi|3087 : AA-G-CC-CCC-GGAAGCG--GA-GAGG-TTT------T-------AG-TA---T-T--TTAA--TTGG-G-TCTGgagg
gi|3092 : A-G-CC-CCC-GGAAACT--GA-GAGG-TTTTGAA--T-------AA-CA---T-T--TTCA--TTGA-G-TCTgggg
gi|3091 : A-G-CC-CCC-GAAAGCC--GA-GATA-TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGagggg
gi|3095 : -G-CC-CCT-GGAAGCT--GA-GAGG-ATT------T-------AG-CA---T-T--TTCA--TTGC-A-TTTGgtgg
Alignments
lowQualScore : 0 0 0 0 0 22 333333 1111111 0 111 0 00 00 0 0
lowQualScore : . . . . . .. ...... ....... . ... . .. .. . .
lowQualScore : 4 4 4 4 4 22 000000 3333333 4 999 4 99 66 5 6
consensus : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
Reference ( family-148 ) : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|2910 : GGGCAAA-G-TC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCT
gi|2911 : GGGCGAA-G-CC-CCC-GGAAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGaggg
gi|2912 : GGGTGAA-G-CC-CCC-GGAAACTGAGG-GG--GTT------T-------AG-CA---T-T--TTCA--TTGA-G-TCT
gi|2913 : GGGCGAA-G-CC-CCC-GGAAACTGAGA-GG--TTT------T-------AG-CA---T-T--TTC---TTGG-G-CCCGagggg
gi|2914 : GGGCGAA-G-CC-CTC-GAAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TCGG-G-TCTG
gi|2915 : GGGCGAA-G-CC-CCC-GGAAGATGAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGg
gi|2916 : GGGCGAA-G-CC-CCC-GGAAGCTACGA-AA--TGT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGgggg
gi|2919 : GGGCGAA-G-CC-CCC-AGAAGCTGAGA-GA--TTT------T-------AG-CA---T-T--TTCT--TTGG-G-TCTGgggg
gi|2921 : GGACGAA-G-CC-TTC-GGAAACTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCCG
gi|2922 : GGGCAAA-G-CC-CCC-GGGAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGggg
gi|2924 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--GTT------T-------AG-TA---T-T--TCCA--TTGC-G-TCTGag
gi|2925 : GGGCGAA-G-CC-CTT-GGAAGCGGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTggg
gi|2926 : GGGCGAA-GTCC-CCC-GGACGCTGAGA-TG--TTT------T-------AG-CA---T-T--TTTA--TTGG-G-TCTGagagg
gi|2927 : GGGCGAA-G-CC-TCC-GGAAGCTGAGA-GG--TTT------T-------GG-CA---T-T--TTCA--TTgggg
gi|2929 : GGGCGAA-G-CC-CCC-GGA-GCTGAGA-GA--TTT------T-------AG-CA---T-T--TTTA--TTGG-G-TCTG
gi|2930 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA---T-T--TTC---TTGC-G-TCTG
gi|2931 : GGGCGAA-G-CC-CCC-GTAAGCTAAGA-AA--TTT------T-------AG-CA---C-T--TTCA--TTGC-G-TCTGgggg
gi|2933 : GGGCGAA-T-TC-CCC-GGAAGCTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTgggg
gi|2934 : GGGCAAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCaagg
gi|2936 : GGGCGAA-T-CT-CCC-GGAAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGgggggg
gi|2937 : GGGCAAA-G-CC-CCA-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTTG-G-
gi|2940 : GGGCGAA-G-CC-CCC-TGAAGCTGAGA-GA--TTT------T-------AG-CA---C-T--TTCT--TTGG-G-TCTGaaatggggg
gi|2941 : GGGCGAA-G-CC-CCC-GGAAACTGAGA-GG--CTT------T-------AG-CA---T-T--TTgagg
gi|2943 : GGGCAAA-G-CC-CCC-GGAAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TT-G-G-TCTG
gi|2944 : GGGCGAA-G--C-CCC-GGAAACTGAAA-GGT-TTT------T-------AG-CA---T-T--TTCA--CTGG-G-TCTGgag
gi|2945 : GGACGAA-G-CC-CCC-GGGAACTGAGA-GA--TTT------T-------AA-CA-----T--TTCA--TTGG-G-TCCG
gi|2946 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--ATT------T-------AG-CA---T-T--TTCA--TTGC-T-TCTGggg
gi|2947 : GGGCGAA-G-TC-CTC-GAAAGCTGAAA-GA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCtggg
gi|2948 : GGACAAA-G-CC-CCC-GGAGGCCGAGA-GG--TTT------T-------AG-CA---T-T--TTTA--TTGT-G-TCTGgggggg
gi|2949 : GGGCGAA-G-CC-CCC-AGAAACTTAGA-GA--TTT------T-------AG-CA---T-T--TTTA--TTgggg
gi|2951 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA-----T--TTCA--TTGC-G-TCTG
gi|2954 : GGGCGAA-G-CC-CCC-GGAAGCTGAAA-GG--TTT------T-------GG-CA---T-T--TTCA--TTgg
gi|2955 : GGGCGAA-G-GA-ACC-GGAAGCTGAGA-TA--TTT------T-------AG-CA---T-T--TTCA--TGGG-G-TCTG
gi|2956 : GGGCGAA-G-CC-CCC-GGAAGCTGACA-GG--TTT------T-------AG-CA---C-TTATTCA--TTGG-G-TTTgag
gi|2957 : GGGCGAA-G-CC-CCC-GGAAGTTGAAA-GAT-TTT------T-------AG-CA---T-T--TTCG--TTGG-G-TATGctgggag
gi|2958 : GGGCGAA-A-CC-CCC-GAAAGCTGAGA-GG--TTT------A-------AG-CA---T-T--TTCA--TTggg
gi|2959 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA---T-T--TTCA--T
gi|2961 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-TT--TTT------T-------AG-CA---T-T--TTCA--TGGG-G-TGTGgctctagggg
gi|2962 : GGGCGAA-G-CC-CCC-GGAGGCTGAGA-GG--TTT------G-------GA-CA---T-T--TTCA--TGGG-G-TCTgag
gi|2963 : GGGCGAA-G-CC-CCA-GGAAGCTGAAA-GG--TTT------T-------GG-CA---T-T--TTCA--TTagag
gi|2964 : GGGCGAG-G-CG-CCC-GAAAGCTGAGA-AA--TTT------T-------AG-TA---T-T--TTCA--TTGG-G-TCTG
gi|2965 : GGGCGAA-G-CC-CGC-GGAAGCTGAGA-GG--TTT------T-------AG-CG---T-T--TTCA--TTg
gi|2966 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------GG-GA---T-T--TTCA--TT
gi|2968 : GGGGGAA-G-CC-CCCCAGAAGCTGAGA-GA--TTT------T-------AT-CA---T-T--TTCA--TTGG-G-
gi|2969 : GGGCGAA-G-CC-CC--GGAAGCTGAGA-TA--TTT------T-------AG-CA---T-T--TTCA---TGG-G-TCTG
gi|2970 : GAGCGAA-G-CC-CCC-GGAAGCTGAGA-GT--TTT------G-------GG-CA---T-T--TTCA--TTgagg
gi|2971 : GGGCAAA-G-CC-CCC-GGAAGCTGAAA-GG--TTT------T-------AA-CA---T-T--TTCA--TT
gi|2972 : GGGCGAC-G-CC-CCC-GGGAGTTGAAA-GT--TTT------T-------AG-CA---T-T--TTCA--TAGG-G-TCTG
gi|2973 : GGGTGAA-G-CC-TCC-GGAAGCTGAAA-GA--TTT------C-------AG-CA---T-T--TGTA--TTGG-G-TCTG
gi|2974 : GAGCGAA-G-CC-CCC-GGAAGCTGAGAGGG--TTTACATG-T-------AG-CA---T-T--TTCA--TTGG-G-CCTgg
gi|2975 : GGGCGAA-G-CT-CCC-GGAAGCTGAGA-TA--TTT------T-------AT-CAT--T-T--TTCA--TTGG-G-TCCG
gi|2978 : GGGCGAA-C-CC-TCC-AGAAGCTGAGA-GA--TTT------T-------TG-CA---T-T--TTCG--TTGC-G-TCTGgg
gi|2979 : GGGCGAA-G-CC-CCG-GAAAGCTAACA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGgggg
gi|2980 : GGGCGAA-G-CC-CCC-AGAAGATGAGA-AAT-TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCgggg
gi|2983 : GGGCGAA-G-CC-CC--GGAAGCTGAGA-AA--TTT------T-------AGCCG---T-T--TTCA--TTGC-G-TCTGctggggg
gi|2984 : GGGCGAA-G-CC-CCC-GGAAGCTTAGA--A--TTT------T-------AG-CA---T-T--TTCA--T--G-G-TCTggg
gi|2985 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--ATT------T-------AA-CA---T-T--TTTA--TTaggg
gi|2987 : GGGCGTA-A-CC-CCC-ATACGCTGACA-AG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|2988 : GGGCGAA-G-CC-CC--GGAAGCCCAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGG-A-TCTGg
gi|2991 : GGGCGAA-T-CC-CCC-GGAAGCTTAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TAGG-gagg
gi|2992 : GGCCAAA-G-CC-CCC-AGAAACTGAGA-TG--TTT------T-------AG-CA---T-T--TTCA--TTGT-G-TCCGactggagg
gi|2993 : GGACGAA-G-CC-CCC-GAAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCggg
gi|2994 : GGGTGAA-G-TC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-TA---T-T--TTCG--TT
gi|2995 : GGGCGAA-G-CC-CCC-AGAAGCCGAGA-GG--TTT------T-------AG-CA---T-C--TTCA--
gi|2996 : GGGCGAA-G-CC-CC--GAAAGCTGAGA-AA--TTT------T-------AG-CA-----T--TTCA--TTGC-G-TCTG
gi|2998 : GGGCGAA-A-CC-CCG-AAAAGCTGAGA-GA--TTT------T-------AG-CA---T-T--TCCA--TTGC-G-TTTGggg
gi|2999 : GGGCAAA-G-GC-CCC-GGAAGCTAAGA-TA--TTT------T-------AG-CA---T-T--TTCA--GTGG-G-CCTGggg
gi|3000 : GGGCGAA-G-CC-TCT-GGAGGCTGGGA-GG--TTT------T-------AG-CA---T-T--TTTA--TTggag
gi|3001 : GGGCGAAAG-GC-CCC-GGGGGCTGAGA-GG--TTT------T-------GG-CAT--T-T--TTCA--TTGG-G-TCT
gi|3002 : GGGCGAA-G-CC-CC--GGAAGCTGAGA-AG---TT------T-------GG-CA---T-T--TTCA--TTGG-ag
gi|3003 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AAATTTT------T-------AG-CA---T-T--TTTA--TTGactggagg
gi|3004 : GGGCGAA-G-CT-CC--GGAAGCTGAGA-GA---TT------T-------AG-CA---T-T--TTC---TTGG-G-TCTGcatcgggg
gi|3007 : GGGCGAA-G-TC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--g
gi|3008 : GGGCGAA-G-CC-CGC-GGAAGCTGAGC-GG--TTT------T-------AG-TG---T-T--TTCA--TT
gi|3010 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GC--TTT------TTTTAATAAG-CA---T-T--TTCA---TAG-G-TCTG
gi|3011 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GA--CTTTTTTAAT-------AG-CA---T-T--TTCA--TAGG-GTTCTGaagg
gi|3012 : GGGCGAA-G-TC-CCC-GAAA-TTGAAA-GG--TTT------C-------GG-CA---T-T--TTCA--TTGG-T-TCTGaagg
gi|3013 : GGGCGAA-G-CC-CCC-GG-AGCTGAGT-GGA-GTT------T-------AG-CA---T-T--TTCA--TTGGCG-TCTggag
gi|3014 : GGACGAA-G-CC-CC--GAAAGCTGAGA-GA--TTT--------------AG-CA---T-T--TTCA--TTGC-G-TCtggg
gi|3015 : GGGCGAA-G-CG-CCC-GGAAGCTGAGA-GA--TTT------T-------AG-CA---T-C--TTTA--CTgggggg
gi|3016 : GGGTGAA-G-CAACCC-GGAAGCTGAGA-GA--TTT------T-------AG-TAT--T-T--TTTA--TTGC-G-TCTG
gi|3017 : GGGCGAG-G-CC-CCT-GGAAGCTGATA-TA--TTT------T-------AG-CA---T-T--TACA--TTGA-G-TCTggg
gi|3018 : GGGGGAA-G-CC-CCC-GGAAGCTGAGA-AA--ATT------T-------TG-CA---T-TG-TTCA--TTGC-G-TCTGtggg
gi|3020 : GGGCGAA-G-TC-CCC-GAAA-CTGAGA-GG--TTT------T-------AA-CACTGT-T--TTCAATTTGG-G-Tgg
gi|3060 : GGCAAA-G-CT-CCC-GGAAGCTAAGA-GA--TTT------T-------AG-CA---T-T--TTCG--TTGG-G-TCTGtcctggggg
gi|3062 : GGCGAA-G-CC-CCC-GGAAGCTGAGA-GT--TTT------T-------AG-CA---T-T--TTGA--TTgggg
gi|3063 : GGCGAA-G-CC-CCC-GGAAGCTGAGA-GT--TTT------T-------AG-CA---T-T--TTGA--TT
gi|3064 : GGCGAA-G-CC-CCT-TGAAGCTGAGA-GG--TTT------T-------AT-CA---T-T--TGCA--TTGG-A-T
gi|3065 : GACGAA-G-CC-CC--GGAAGCTGAGA-GG--TCT------T-------AG-CA---T-T--TTCA--TTgtagg
gi|3066 : GGAGAA-A-CC-CC--GGAAGCTAAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTG
gi|3067 : GGCGAA-G-CC-CCC-GTAAGCTGAGA-GA--TTT------T-------GG-CA---T-T--TTCA--TTggg
gi|3068 : GGGGAA-G-CC-CCC-G-AAGCTGAGA-GG--TTT------T-------AG-TA---T-T--TTCA--TTttgaaattggggg
gi|3076 : GCGAA---TC-TCC-GGAAACTGA-A-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|3077 : GCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCT--TT
gi|3078 : GCGAA-G-CT-CCC-GGAAGCTTGGA-GA--ATT------T-------AG-CA---TCT--TTCA--TTGG-G-TTTG
gi|3087 : AA-G-CC-CCC-GGAAGCGGAGA-GG--TTT------T-------AG-TA---T-T--TTAA--TTGG-G-TCTGggg
gi|3088 : AA-G-CC-CCC-GGAAACAGAGA-GA--TTT------T-------AG-CA---T-T--TTCT--TTGG-G-TCTGgggg
gi|3091 : A-G-CC-CCC-GAAAGCCGAGA-TA--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGgagg
gi|3092 : A-G-CC-CCC-GGAAACTGAGA-GG--TTTTGAA--T-------AA-CA---T-T--TTCA--TTGA-G-TCTgtgg
gi|3095 : -G-CC-CCT-GGAAGCTGAGA-GG--ATT------T-------AG-CA---T-T--TTCA--TTGC-A-TTTGagggg
Alignments
lowQualScore : 0 0 0 0 0 22 333333 1111111 0 111 0 00 00 0 0
lowQualScore : . . . . . .. ...... ....... . ... . .. .. . .
lowQualScore : 4 4 4 4 4 22 000000 3333333 4 999 4 99 66 5 6
consensus : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
Reference ( family-148 ) : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|2910 : GGGCAAA-G-TC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCT
gi|2911 : GGGCGAA-G-CC-CCC-GGAAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGaggg
gi|2912 : GGGTGAA-G-CC-CCC-GGAAACTGAGG-GG--GTT------T-------AG-CA---T-T--TTCA--TTGA-G-TCT
gi|2913 : GGGCGAA-G-CC-CCC-GGAAACTGAGA-GG--TTT------T-------AG-CA---T-T--TTC---TTGG-G-CCCGagggg
gi|2914 : GGGCGAA-G-CC-CTC-GAAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TCGG-G-TCTG
gi|2915 : GGGCGAA-G-CC-CCC-GGAAGATGAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGg
gi|2916 : GGGCGAA-G-CC-CCC-GGAAGCTACGA-AA--TGT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGgggg
gi|2919 : GGGCGAA-G-CC-CCC-AGAAGCTGAGA-GA--TTT------T-------AG-CA---T-T--TTCT--TTGG-G-TCTGgggg
gi|2921 : GGACGAA-G-CC-TTC-GGAAACTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCCG
gi|2922 : GGGCAAA-G-CC-CCC-GGGAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGggg
gi|2924 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--GTT------T-------AG-TA---T-T--TCCA--TTGC-G-TCTGag
gi|2925 : GGGCGAA-G-CC-CTT-GGAAGCGGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTggg
gi|2926 : GGGCGAA-GTCC-CCC-GGACGCTGAGA-TG--TTT------T-------AG-CA---T-T--TTTA--TTGG-G-TCTGagagg
gi|2927 : GGGCGAA-G-CC-TCC-GGAAGCTGAGA-GG--TTT------T-------GG-CA---T-T--TTCA--TTgggg
gi|2929 : GGGCGAA-G-CC-CCC-GGA-GCTGAGA-GA--TTT------T-------AG-CA---T-T--TTTA--TTGG-G-TCTG
gi|2930 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA---T-T--TTC---TTGC-G-TCTG
gi|2931 : GGGCGAA-G-CC-CCC-GTAAGCTAAGA-AA--TTT------T-------AG-CA---C-T--TTCA--TTGC-G-TCTGgggg
gi|2933 : GGGCGAA-T-TC-CCC-GGAAGCTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTgggg
gi|2934 : GGGCAAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCaagg
gi|2936 : GGGCGAA-T-CT-CCC-GGAAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGgggggg
gi|2937 : GGGCAAA-G-CC-CCA-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTTG-G-
gi|2940 : GGGCGAA-G-CC-CCC-TGAAGCTGAGA-GA--TTT------T-------AG-CA---C-T--TTCT--TTGG-G-TCTGaaatggggg
gi|2941 : GGGCGAA-G-CC-CCC-GGAAACTGAGA-GG--CTT------T-------AG-CA---T-T--TTgagg
gi|2943 : GGGCAAA-G-CC-CCC-GGAAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TT-G-G-TCTG
gi|2944 : GGGCGAA-G--C-CCC-GGAAACTGAAA-GGT-TTT------T-------AG-CA---T-T--TTCA--CTGG-G-TCTGgag
gi|2945 : GGACGAA-G-CC-CCC-GGGAACTGAGA-GA--TTT------T-------AA-CA-----T--TTCA--TTGG-G-TCCG
gi|2946 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--ATT------T-------AG-CA---T-T--TTCA--TTGC-T-TCTGggg
gi|2947 : GGGCGAA-G-TC-CTC-GAAAGCTGAAA-GA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCtggg
gi|2948 : GGACAAA-G-CC-CCC-GGAGGCCGAGA-GG--TTT------T-------AG-CA---T-T--TTTA--TTGT-G-TCTGgggggg
gi|2949 : GGGCGAA-G-CC-CCC-AGAAACTTAGA-GA--TTT------T-------AG-CA---T-T--TTTA--TTgggg
gi|2951 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA-----T--TTCA--TTGC-G-TCTG
gi|2954 : GGGCGAA-G-CC-CCC-GGAAGCTGAAA-GG--TTT------T-------GG-CA---T-T--TTCA--TTgg
gi|2955 : GGGCGAA-G-GA-ACC-GGAAGCTGAGA-TA--TTT------T-------AG-CA---T-T--TTCA--TGGG-G-TCTG
gi|2956 : GGGCGAA-G-CC-CCC-GGAAGCTGACA-GG--TTT------T-------AG-CA---C-TTATTCA--TTGG-G-TTTgag
gi|2957 : GGGCGAA-G-CC-CCC-GGAAGTTGAAA-GAT-TTT------T-------AG-CA---T-T--TTCG--TTGG-G-TATGctgggag
gi|2958 : GGGCGAA-A-CC-CCC-GAAAGCTGAGA-GG--TTT------A-------AG-CA---T-T--TTCA--TTggg
gi|2959 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA---T-T--TTCA--T
gi|2961 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-TT--TTT------T-------AG-CA---T-T--TTCA--TGGG-G-TGTGgctctagggg
gi|2962 : GGGCGAA-G-CC-CCC-GGAGGCTGAGA-GG--TTT------G-------GA-CA---T-T--TTCA--TGGG-G-TCTgag
gi|2963 : GGGCGAA-G-CC-CCA-GGAAGCTGAAA-GG--TTT------T-------GG-CA---T-T--TTCA--TTagag
gi|2964 : GGGCGAG-G-CG-CCC-GAAAGCTGAGA-AA--TTT------T-------AG-TA---T-T--TTCA--TTGG-G-TCTG
gi|2965 : GGGCGAA-G-CC-CGC-GGAAGCTGAGA-GG--TTT------T-------AG-CG---T-T--TTCA--TTg
gi|2966 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------GG-GA---T-T--TTCA--TT
gi|2968 : GGGGGAA-G-CC-CCCCAGAAGCTGAGA-GA--TTT------T-------AT-CA---T-T--TTCA--TTGG-G-
gi|2969 : GGGCGAA-G-CC-CC--GGAAGCTGAGA-TA--TTT------T-------AG-CA---T-T--TTCA---TGG-G-TCTG
gi|2970 : GAGCGAA-G-CC-CCC-GGAAGCTGAGA-GT--TTT------G-------GG-CA---T-T--TTCA--TTgagg
gi|2971 : GGGCAAA-G-CC-CCC-GGAAGCTGAAA-GG--TTT------T-------AA-CA---T-T--TTCA--TT
gi|2972 : GGGCGAC-G-CC-CCC-GGGAGTTGAAA-GT--TTT------T-------AG-CA---T-T--TTCA--TAGG-G-TCTG
gi|2973 : GGGTGAA-G-CC-TCC-GGAAGCTGAAA-GA--TTT------C-------AG-CA---T-T--TGTA--TTGG-G-TCTG
gi|2974 : GAGCGAA-G-CC-CCC-GGAAGCTGAGAGGG--TTTACATG-T-------AG-CA---T-T--TTCA--TTGG-G-CCTgg
gi|2975 : GGGCGAA-G-CT-CCC-GGAAGCTGAGA-TA--TTT------T-------AT-CAT--T-T--TTCA--TTGG-G-TCCG
gi|2978 : GGGCGAA-C-CC-TCC-AGAAGCTGAGA-GA--TTT------T-------TG-CA---T-T--TTCG--TTGC-G-TCTGgg
gi|2979 : GGGCGAA-G-CC-CCG-GAAAGCTAACA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGgggg
gi|2980 : GGGCGAA-G-CC-CCC-AGAAGATGAGA-AAT-TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCgggg
gi|2983 : GGGCGAA-G-CC-CC--GGAAGCTGAGA-AA--TTT------T-------AGCCG---T-T--TTCA--TTGC-G-TCTGctggggg
gi|2984 : GGGCGAA-G-CC-CCC-GGAAGCTTAGA--A--TTT------T-------AG-CA---T-T--TTCA--T--G-G-TCTggg
gi|2985 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--ATT------T-------AA-CA---T-T--TTTA--TTaggg
gi|2987 : GGGCGTA-A-CC-CCC-ATACGCTGACA-AG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|2988 : GGGCGAA-G-CC-CC--GGAAGCCCAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGG-A-TCTGg
gi|2991 : GGGCGAA-T-CC-CCC-GGAAGCTTAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TAGG-gagg
gi|2992 : GGCCAAA-G-CC-CCC-AGAAACTGAGA-TG--TTT------T-------AG-CA---T-T--TTCA--TTGT-G-TCCGactggagg
gi|2993 : GGACGAA-G-CC-CCC-GAAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCggg
gi|2994 : GGGTGAA-G-TC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-TA---T-T--TTCG--TT
gi|2995 : GGGCGAA-G-CC-CCC-AGAAGCCGAGA-GG--TTT------T-------AG-CA---T-C--TTCA--
gi|2996 : GGGCGAA-G-CC-CC--GAAAGCTGAGA-AA--TTT------T-------AG-CA-----T--TTCA--TTGC-G-TCTG
gi|2998 : GGGCGAA-A-CC-CCG-AAAAGCTGAGA-GA--TTT------T-------AG-CA---T-T--TCCA--TTGC-G-TTTGggg
gi|2999 : GGGCAAA-G-GC-CCC-GGAAGCTAAGA-TA--TTT------T-------AG-CA---T-T--TTCA--GTGG-G-CCTGggg
gi|3000 : GGGCGAA-G-CC-TCT-GGAGGCTGGGA-GG--TTT------T-------AG-CA---T-T--TTTA--TTggag
gi|3001 : GGGCGAAAG-GC-CCC-GGGGGCTGAGA-GG--TTT------T-------GG-CAT--T-T--TTCA--TTGG-G-TCT
gi|3002 : GGGCGAA-G-CC-CC--GGAAGCTGAGA-AG---TT------T-------GG-CA---T-T--TTCA--TTGG-ag
gi|3003 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AAATTTT------T-------AG-CA---T-T--TTTA--TTGactggagg
gi|3004 : GGGCGAA-G-CT-CC--GGAAGCTGAGA-GA---TT------T-------AG-CA---T-T--TTC---TTGG-G-TCTGcatcgggg
gi|3007 : GGGCGAA-G-TC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--g
gi|3008 : GGGCGAA-G-CC-CGC-GGAAGCTGAGC-GG--TTT------T-------AG-TG---T-T--TTCA--TT
gi|3010 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GC--TTT------TTTTAATAAG-CA---T-T--TTCA---TAG-G-TCTG
gi|3011 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GA--CTTTTTTAAT-------AG-CA---T-T--TTCA--TAGG-GTTCTGaagg
gi|3012 : GGGCGAA-G-TC-CCC-GAAA-TTGAAA-GG--TTT------C-------GG-CA---T-T--TTCA--TTGG-T-TCTGaagg
gi|3013 : GGGCGAA-G-CC-CCC-GG-AGCTGAGT-GGA-GTT------T-------AG-CA---T-T--TTCA--TTGGCG-TCTggag
gi|3014 : GGACGAA-G-CC-CC--GAAAGCTGAGA-GA--TTT--------------AG-CA---T-T--TTCA--TTGC-G-TCtggg
gi|3015 : GGGCGAA-G-CG-CCC-GGAAGCTGAGA-GA--TTT------T-------AG-CA---T-C--TTTA--CTgggggg
gi|3016 : GGGTGAA-G-CAACCC-GGAAGCTGAGA-GA--TTT------T-------AG-TAT--T-T--TTTA--TTGC-G-TCTG
gi|3017 : GGGCGAG-G-CC-CCT-GGAAGCTGATA-TA--TTT------T-------AG-CA---T-T--TACA--TTGA-G-TCTggg
gi|3018 : GGGGGAA-G-CC-CCC-GGAAGCTGAGA-AA--ATT------T-------TG-CA---T-TG-TTCA--TTGC-G-TCTGtggg
gi|3020 : GGGCGAA-G-TC-CCC-GAAA-CTGAGA-GG--TTT------T-------AA-CACTGT-T--TTCAATTTGG-G-Tgg
gi|3060 : GGCAAA-G-CT-CCC-GGAAGCTAAGA-GA--TTT------T-------AG-CA---T-T--TTCG--TTGG-G-TCTGtcctggggg
gi|3062 : GGCGAA-G-CC-CCC-GGAAGCTGAGA-GT--TTT------T-------AG-CA---T-T--TTGA--TTgggg
gi|3063 : GGCGAA-G-CC-CCC-GGAAGCTGAGA-GT--TTT------T-------AG-CA---T-T--TTGA--TT
gi|3064 : GGCGAA-G-CC-CCT-TGAAGCTGAGA-GG--TTT------T-------AT-CA---T-T--TGCA--TTGG-A-T
gi|3065 : GACGAA-G-CC-CC--GGAAGCTGAGA-GG--TCT------T-------AG-CA---T-T--TTCA--TTgtagg
gi|3066 : GGAGAA-A-CC-CC--GGAAGCTAAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTG
gi|3067 : GGCGAA-G-CC-CCC-GTAAGCTGAGA-GA--TTT------T-------GG-CA---T-T--TTCA--TTggg
gi|3068 : GGGGAA-G-CC-CCC-G-AAGCTGAGA-GG--TTT------T-------AG-TA---T-T--TTCA--TTttgaaattggggg
gi|3076 : GCGAA---TC-TCC-GGAAACTGA-A-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|3077 : GCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCT--TT
gi|3078 : GCGAA-G-CT-CCC-GGAAGCTTGGA-GA--ATT------T-------AG-CA---TCT--TTCA--TTGG-G-TTTG
gi|3087 : AA-G-CC-CCC-GGAAGCGGAGA-GG--TTT------T-------AG-TA---T-T--TTAA--TTGG-G-TCTGggg
gi|3088 : AA-G-CC-CCC-GGAAACAGAGA-GA--TTT------T-------AG-CA---T-T--TTCT--TTGG-G-TCTGgggg
gi|3091 : A-G-CC-CCC-GAAAGCCGAGA-TA--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGgagg
gi|3092 : A-G-CC-CCC-GGAAACTGAGA-GG--TTTTGAA--T-------AA-CA---T-T--TTCA--TTGA-G-TCTgtgg
gi|3095 : -G-CC-CCT-GGAAGCTGAGA-GG--ATT------T-------AG-CA---T-T--TTCA--TTGC-A-TTTGagggg
blockSeqs : AT TTTTAA TTTAATA CTG
blockSeqs : T ACATG . T
blockSeqs : T TGAA . T
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blockSeqs : . . . .
blockSeqCons :
originalCons : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
finalCons : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
Alignments
lowQualScore : 0 0 0 0 0 22 333333 1111111 0 111 0 00 00 0 0
lowQualScore : . . . . . .. ...... ....... . ... . .. .. . .
lowQualScore : 4 4 4 4 4 22 000000 3333333 4 999 4 99 66 5 6
consensus : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
Reference ( family-148 ) : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|2910 : GGGCAAA-G-TC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCT
gi|2911 : GGGCGAA-G-CC-CCC-GGAAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGaggg
gi|2912 : GGGTGAA-G-CC-CCC-GGAAACTGAGG-GG--GTT------T-------AG-CA---T-T--TTCA--TTGA-G-TCT
gi|2913 : GGGCGAA-G-CC-CCC-GGAAACTGAGA-GG--TTT------T-------AG-CA---T-T--TTC---TTGG-G-CCCGagggg
gi|2914 : GGGCGAA-G-CC-CTC-GAAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TCGG-G-TCTG
gi|2915 : GGGCGAA-G-CC-CCC-GGAAGATGAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGg
gi|2916 : GGGCGAA-G-CC-CCC-GGAAGCTACGA-AA--TGT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGgggg
gi|2919 : GGGCGAA-G-CC-CCC-AGAAGCTGAGA-GA--TTT------T-------AG-CA---T-T--TTCT--TTGG-G-TCTGgggg
gi|2921 : GGACGAA-G-CC-TTC-GGAAACTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCCG
gi|2922 : GGGCAAA-G-CC-CCC-GGGAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGggg
gi|2924 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--GTT------T-------AG-TA---T-T--TCCA--TTGC-G-TCTGag
gi|2925 : GGGCGAA-G-CC-CTT-GGAAGCGGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTggg
gi|2926 : GGGCGAA-GTCC-CCC-GGACGCTGAGA-TG--TTT------T-------AG-CA---T-T--TTTA--TTGG-G-TCTGagagg
gi|2927 : GGGCGAA-G-CC-TCC-GGAAGCTGAGA-GG--TTT------T-------GG-CA---T-T--TTCA--TTgggg
gi|2929 : GGGCGAA-G-CC-CCC-GGA-GCTGAGA-GA--TTT------T-------AG-CA---T-T--TTTA--TTGG-G-TCTG
gi|2930 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA---T-T--TTC---TTGC-G-TCTG
gi|2931 : GGGCGAA-G-CC-CCC-GTAAGCTAAGA-AA--TTT------T-------AG-CA---C-T--TTCA--TTGC-G-TCTGgggg
gi|2933 : GGGCGAA-T-TC-CCC-GGAAGCTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTgggg
gi|2934 : GGGCAAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCaagg
gi|2936 : GGGCGAA-T-CT-CCC-GGAAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGgggggg
gi|2937 : GGGCAAA-G-CC-CCA-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TTTG-G-
gi|2940 : GGGCGAA-G-CC-CCC-TGAAGCTGAGA-GA--TTT------T-------AG-CA---C-T--TTCT--TTGG-G-TCTGaaatggggg
gi|2941 : GGGCGAA-G-CC-CCC-GGAAACTGAGA-GG--CTT------T-------AG-CA---T-T--TTgagg
gi|2943 : GGGCAAA-G-CC-CCC-GGAAACTGAAA-GG--TTT------T-------AG-CA---T-T--TTCA--TT-G-G-TCTG
gi|2944 : GGGCGAA-G--C-CCC-GGAAACTGAAA-GGT-TTT------T-------AG-CA---T-T--TTCA--CTGG-G-TCTGgag
gi|2945 : GGACGAA-G-CC-CCC-GGGAACTGAGA-GA--TTT------T-------AA-CA-----T--TTCA--TTGG-G-TCCG
gi|2946 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--ATT------T-------AG-CA---T-T--TTCA--TTGC-T-TCTGggg
gi|2947 : GGGCGAA-G-TC-CTC-GAAAGCTGAAA-GA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCtggg
gi|2948 : GGACAAA-G-CC-CCC-GGAGGCCGAGA-GG--TTT------T-------AG-CA---T-T--TTTA--TTGT-G-TCTGgggggg
gi|2949 : GGGCGAA-G-CC-CCC-AGAAACTTAGA-GA--TTT------T-------AG-CA---T-T--TTTA--TTgggg
gi|2951 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA-----T--TTCA--TTGC-G-TCTG
gi|2954 : GGGCGAA-G-CC-CCC-GGAAGCTGAAA-GG--TTT------T-------GG-CA---T-T--TTCA--TTgg
gi|2955 : GGGCGAA-G-GA-ACC-GGAAGCTGAGA-TA--TTT------T-------AG-CA---T-T--TTCA--TGGG-G-TCTG
gi|2956 : GGGCGAA-G-CC-CCC-GGAAGCTGACA-GG--TTT------T-------AG-CA---C-TTATTCA--TTGG-G-TTTgag
gi|2957 : GGGCGAA-G-CC-CCC-GGAAGTTGAAA-GAT-TTT------T-------AG-CA---T-T--TTCG--TTGG-G-TATGctgggag
gi|2958 : GGGCGAA-A-CC-CCC-GAAAGCTGAGA-GG--TTT------A-------AG-CA---T-T--TTCA--TTggg
gi|2959 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AA--TTT------T-------AG-CA---T-T--TTCA--T
gi|2961 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-TT--TTT------T-------AG-CA---T-T--TTCA--TGGG-G-TGTGgctctagggg
gi|2962 : GGGCGAA-G-CC-CCC-GGAGGCTGAGA-GG--TTT------G-------GA-CA---T-T--TTCA--TGGG-G-TCTgag
gi|2963 : GGGCGAA-G-CC-CCA-GGAAGCTGAAA-GG--TTT------T-------GG-CA---T-T--TTCA--TTagag
gi|2964 : GGGCGAG-G-CG-CCC-GAAAGCTGAGA-AA--TTT------T-------AG-TA---T-T--TTCA--TTGG-G-TCTG
gi|2965 : GGGCGAA-G-CC-CGC-GGAAGCTGAGA-GG--TTT------T-------AG-CG---T-T--TTCA--TTg
gi|2966 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------GG-GA---T-T--TTCA--TT
gi|2968 : GGGGGAA-G-CC-CCCCAGAAGCTGAGA-GA--TTT------T-------AT-CA---T-T--TTCA--TTGG-G-
gi|2969 : GGGCGAA-G-CC-CC--GGAAGCTGAGA-TA--TTT------T-------AG-CA---T-T--TTCA---TGG-G-TCTG
gi|2970 : GAGCGAA-G-CC-CCC-GGAAGCTGAGA-GT--TTT------G-------GG-CA---T-T--TTCA--TTgagg
gi|2971 : GGGCAAA-G-CC-CCC-GGAAGCTGAAA-GG--TTT------T-------AA-CA---T-T--TTCA--TT
gi|2972 : GGGCGAC-G-CC-CCC-GGGAGTTGAAA-GT--TTT------T-------AG-CA---T-T--TTCA--TAGG-G-TCTG
gi|2973 : GGGTGAA-G-CC-TCC-GGAAGCTGAAA-GA--TTT------C-------AG-CA---T-T--TGTA--TTGG-G-TCTG
gi|2974 : GAGCGAA-G-CC-CCC-GGAAGCTGAGAGGG--TTTACATG-T-------AG-CA---T-T--TTCA--TTGG-G-CCTgg
gi|2975 : GGGCGAA-G-CT-CCC-GGAAGCTGAGA-TA--TTT------T-------AT-CAT--T-T--TTCA--TTGG-G-TCCG
gi|2978 : GGGCGAA-C-CC-TCC-AGAAGCTGAGA-GA--TTT------T-------TG-CA---T-T--TTCG--TTGC-G-TCTGgg
gi|2979 : GGGCGAA-G-CC-CCG-GAAAGCTAACA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTGgggg
gi|2980 : GGGCGAA-G-CC-CCC-AGAAGATGAGA-AAT-TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCgggg
gi|2983 : GGGCGAA-G-CC-CC--GGAAGCTGAGA-AA--TTT------T-------AGCCG---T-T--TTCA--TTGC-G-TCTGctggggg
gi|2984 : GGGCGAA-G-CC-CCC-GGAAGCTTAGA--A--TTT------T-------AG-CA---T-T--TTCA--T--G-G-TCTggg
gi|2985 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GG--ATT------T-------AA-CA---T-T--TTTA--TTaggg
gi|2987 : GGGCGTA-A-CC-CCC-ATACGCTGACA-AG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|2988 : GGGCGAA-G-CC-CC--GGAAGCCCAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGG-A-TCTGg
gi|2991 : GGGCGAA-T-CC-CCC-GGAAGCTTAGA-GG--TTT------T-------AG-CA---T-T--TTCA--TAGG-gagg
gi|2992 : GGCCAAA-G-CC-CCC-AGAAACTGAGA-TG--TTT------T-------AG-CA---T-T--TTCA--TTGT-G-TCCGactggagg
gi|2993 : GGACGAA-G-CC-CCC-GAAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCggg
gi|2994 : GGGTGAA-G-TC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-TA---T-T--TTCG--TT
gi|2995 : GGGCGAA-G-CC-CCC-AGAAGCCGAGA-GG--TTT------T-------AG-CA---T-C--TTCA--
gi|2996 : GGGCGAA-G-CC-CC--GAAAGCTGAGA-AA--TTT------T-------AG-CA-----T--TTCA--TTGC-G-TCTG
gi|2998 : GGGCGAA-A-CC-CCG-AAAAGCTGAGA-GA--TTT------T-------AG-CA---T-T--TCCA--TTGC-G-TTTGggg
gi|2999 : GGGCAAA-G-GC-CCC-GGAAGCTAAGA-TA--TTT------T-------AG-CA---T-T--TTCA--GTGG-G-CCTGggg
gi|3000 : GGGCGAA-G-CC-TCT-GGAGGCTGGGA-GG--TTT------T-------AG-CA---T-T--TTTA--TTggag
gi|3001 : GGGCGAAAG-GC-CCC-GGGGGCTGAGA-GG--TTT------T-------GG-CAT--T-T--TTCA--TTGG-G-TCT
gi|3002 : GGGCGAA-G-CC-CC--GGAAGCTGAGA-AG---TT------T-------GG-CA---T-T--TTCA--TTGG-ag
gi|3003 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-AAATTTT------T-------AG-CA---T-T--TTTA--TTGactggagg
gi|3004 : GGGCGAA-G-CT-CC--GGAAGCTGAGA-GA---TT------T-------AG-CA---T-T--TTC---TTGG-G-TCTGcatcgggg
gi|3007 : GGGCGAA-G-TC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--g
gi|3008 : GGGCGAA-G-CC-CGC-GGAAGCTGAGC-GG--TTT------T-------AG-TG---T-T--TTCA--TT
gi|3010 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GC--TTT------TTTTAATAAG-CA---T-T--TTCA---TAG-G-TCTG
gi|3011 : GGGCGAA-G-CC-CCC-GGAAGCTGAGA-GA--CTTTTTTAAT-------AG-CA---T-T--TTCA--TAGG-GTTCTGaagg
gi|3012 : GGGCGAA-G-TC-CCC-GAAA-TTGAAA-GG--TTT------C-------GG-CA---T-T--TTCA--TTGG-T-TCTGaagg
gi|3013 : GGGCGAA-G-CC-CCC-GG-AGCTGAGT-GGA-GTT------T-------AG-CA---T-T--TTCA--TTGGCG-TCTggag
gi|3014 : GGACGAA-G-CC-CC--GAAAGCTGAGA-GA--TTT--------------AG-CA---T-T--TTCA--TTGC-G-TCtggg
gi|3015 : GGGCGAA-G-CG-CCC-GGAAGCTGAGA-GA--TTT------T-------AG-CA---T-C--TTTA--CTgggggg
gi|3016 : GGGTGAA-G-CAACCC-GGAAGCTGAGA-GA--TTT------T-------AG-TAT--T-T--TTTA--TTGC-G-TCTG
gi|3017 : GGGCGAG-G-CC-CCT-GGAAGCTGATA-TA--TTT------T-------AG-CA---T-T--TACA--TTGA-G-TCTggg
gi|3018 : GGGGGAA-G-CC-CCC-GGAAGCTGAGA-AA--ATT------T-------TG-CA---T-TG-TTCA--TTGC-G-TCTGtggg
gi|3020 : GGGCGAA-G-TC-CCC-GAAA-CTGAGA-GG--TTT------T-------AA-CACTGT-T--TTCAATTTGG-G-Tgg
gi|3060 : GGCAAA-G-CT-CCC-GGAAGCTAAGA-GA--TTT------T-------AG-CA---T-T--TTCG--TTGG-G-TCTGtcctggggg
gi|3062 : GGCGAA-G-CC-CCC-GGAAGCTGAGA-GT--TTT------T-------AG-CA---T-T--TTGA--TTgggg
gi|3063 : GGCGAA-G-CC-CCC-GGAAGCTGAGA-GT--TTT------T-------AG-CA---T-T--TTGA--TT
gi|3064 : GGCGAA-G-CC-CCT-TGAAGCTGAGA-GG--TTT------T-------AT-CA---T-T--TGCA--TTGG-A-T
gi|3065 : GACGAA-G-CC-CC--GGAAGCTGAGA-GG--TCT------T-------AG-CA---T-T--TTCA--TTgtagg
gi|3066 : GGAGAA-A-CC-CC--GGAAGCTAAGA-AA--TTT------T-------AG-CA---T-T--TTCA--TTGC-G-TCTG
gi|3067 : GGCGAA-G-CC-CCC-GTAAGCTGAGA-GA--TTT------T-------GG-CA---T-T--TTCA--TTggg
gi|3068 : GGGGAA-G-CC-CCC-G-AAGCTGAGA-GG--TTT------T-------AG-TA---T-T--TTCA--TTttgaaattggggg
gi|3076 : GCGAA---TC-TCC-GGAAACTGA-A-GG--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTG
gi|3077 : GCGAA-G-CC-CCC-GGAAGCTGAGA-GG--TTT------T-------AG-CA---T-T--TTCT--TT
gi|3078 : GCGAA-G-CT-CCC-GGAAGCTTGGA-GA--ATT------T-------AG-CA---TCT--TTCA--TTGG-G-TTTG
gi|3087 : AA-G-CC-CCC-GGAAGCGGAGA-GG--TTT------T-------AG-TA---T-T--TTAA--TTGG-G-TCTGggg
gi|3088 : AA-G-CC-CCC-GGAAACAGAGA-GA--TTT------T-------AG-CA---T-T--TTCT--TTGG-G-TCTGgggg
gi|3091 : A-G-CC-CCC-GAAAGCCGAGA-TA--TTT------T-------AG-CA---T-T--TTCA--TTGG-G-TCTGgagg
gi|3092 : A-G-CC-CCC-GGAAACTGAGA-GG--TTTTGAA--T-------AA-CA---T-T--TTCA--TTGA-G-TCTgtgg
gi|3095 : -G-CC-CCT-GGAAGCTGAGA-GG--ATT------T-------AG-CA---T-T--TTCA--TTGC-A-TTTGagggg