File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated CpHs	Unmethylated CpHs	Methylated CHHs	Unmethylated CHHs
1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam	9365330	4770425	1416833	3174539	3533	652251	4118174	31894941	1239120	3318608	82084	6024406	958945	20271778
2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam	11879398	6006625	1790583	4077846	4344	903038	5103587	39513583	1497289	4117264	163165	7365910	1435751	24934204
3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam	11758842	5986586	1785999	3982084	4173	945387	5041199	38961268	1510643	4047966	95015	7366258	1160492	24780894
4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam	11560658	5900055	1722818	3933721	4064	838058	5061997	39023656	1531736	4015128	91732	7348362	1111531	24925167
5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam	12502181	6330449	1895891	4271452	4389	999180	5331269	41205887	1566626	4328418	117370	7785820	1337497	26070156
6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.bam	12409649	6218679	1972814	4213535	4621	943804	5274875	40707650	1503732	4307883	142180	7630427	1433591	25689837
7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam	10253191	5188963	1560465	3499988	3775	666551	4522412	34904133	1310861	3658964	81490	6588698	1027628	22236492
8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam	14269815	7184144	2182397	4898250	5024	1129326	6054818	46826991	1634958	5063044	133107	8842568	1462077	29691237