Bismark

Bismark Processing Report

/gscratch/scrubbed/samwhite/data/O_lurida/BSseq/whole_genome_BSseq_reads/20180830_trimgalore/8_ACTTGA_L001_R1_001_trimmed.fq.gz

Data processed at 22:57 on 2018-10-16


Alignment

Sequences analysed in total 14269815
Single-end alignments with a unique best hit 7189168
Sequences without alignments under any condition 2182397
Sequences that did not map uniquely 4898250
Genomic sequence context not extractable (edges of chromosomes) 5024

Cytosine Methylation

Total C's analysed 55645916
Methylated C's in CpG context 1989732
Methylated C's in CHG context 163325
Methylated C's in CHH context 1904554
Methylated C's in Unknown context 35445
Unmethylated C's in CpG context 6151369
Unmethylated C's in CHG context 10732784
Unmethylated C's in CHH context 34704152
Unmethylated C's in Unknown context 190719
Percentage methylation (CpG context) 24.4%
Percentage methylation (CHG context) 1.5%
Percentage methylation (CHH context) 5.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3432533 original top strand
CTOT 160954 complementary to original top strand
CTOB 160420 complementary to original bottom strand
OB 3430237 original bottom strand