Bismark

Bismark Processing Report

/gscratch/scrubbed/samwhite/data/O_lurida/BSseq/whole_genome_BSseq_reads/20180830_trimgalore/7_CAGATC_L001_R1_001_trimmed.fq.gz

Data processed at 22:57 on 2018-10-16


Alignment

Sequences analysed in total 10253191
Single-end alignments with a unique best hit 5192738
Sequences without alignments under any condition 1560465
Sequences that did not map uniquely 3499988
Genomic sequence context not extractable (edges of chromosomes) 3775

Cytosine Methylation

Total C's analysed 39971939
Methylated C's in CpG context 1549737
Methylated C's in CHG context 96817
Methylated C's in CHH context 1282992
Methylated C's in Unknown context 23981
Unmethylated C's in CpG context 4197648
Unmethylated C's in CHG context 7683059
Unmethylated C's in CHH context 25161686
Unmethylated C's in Unknown context 133210
Percentage methylation (CpG context) 27.0%
Percentage methylation (CHG context) 1.2%
Percentage methylation (CHH context) 4.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2491190 original top strand
CTOT 102946 complementary to original top strand
CTOB 103523 complementary to original bottom strand
OB 2491304 original bottom strand