7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 4522412 lines in total Total number of methylation call strings processed: 4522412 Final Cytosine Methylation Report ================================= Total number of C's analysed: 34904133 Total methylated C's in CpG context: 1310861 Total methylated C's in CHG context: 81490 Total methylated C's in CHH context: 1027628 Total C to T conversions in CpG context: 3658964 Total C to T conversions in CHG context: 6588698 Total C to T conversions in CHH context: 22236492 C methylated in CpG context: 26.4% C methylated in CHG context: 1.2% C methylated in CHH context: 4.4%