Bismark

Bismark Processing Report

/gscratch/scrubbed/samwhite/data/O_lurida/BSseq/whole_genome_BSseq_reads/20180830_trimgalore/3_TTAGGC_L001_R1_001_trimmed.fq.gz

Data processed at 22:57 on 2018-10-16


Alignment

Sequences analysed in total 11758842
Single-end alignments with a unique best hit 5990759
Sequences without alignments under any condition 1785999
Sequences that did not map uniquely 3982084
Genomic sequence context not extractable (edges of chromosomes) 4173

Cytosine Methylation

Total C's analysed 46552752
Methylated C's in CpG context 1822887
Methylated C's in CHG context 133866
Methylated C's in CHH context 1612255
Methylated C's in Unknown context 29448
Unmethylated C's in CpG context 5101412
Unmethylated C's in CHG context 8920601
Unmethylated C's in CHH context 28961731
Unmethylated C's in Unknown context 168244
Percentage methylation (CpG context) 26.3%
Percentage methylation (CHG context) 1.5%
Percentage methylation (CHH context) 5.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2868663 original top strand
CTOT 125147 complementary to original top strand
CTOB 126934 complementary to original bottom strand
OB 2865842 original bottom strand