#-----BLAST and Exonerate Statistics Thresholds blast_type=ncbi+ #set to 'ncbi+', 'ncbi' or 'wublast' pcov_blastn=0.8 #Blastn Percent Coverage Threhold EST-Genome Alignments pid_blastn=0.85 #Blastn Percent Identity Threshold EST-Genome Aligments eval_blastn=1e-10 #Blastn eval cutoff bit_blastn=40 #Blastn bit cutoff depth_blastn=0 #Blastn depth cutoff (0 to disable cutoff) pcov_blastx=0.5 #Blastx Percent Coverage Threhold Protein-Genome Alignments pid_blastx=0.4 #Blastx Percent Identity Threshold Protein-Genome Aligments eval_blastx=1e-06 #Blastx eval cutoff bit_blastx=30 #Blastx bit cutoff depth_blastx=0 #Blastx depth cutoff (0 to disable cutoff) pcov_tblastx=0.8 #tBlastx Percent Coverage Threhold alt-EST-Genome Alignments pid_tblastx=0.85 #tBlastx Percent Identity Threshold alt-EST-Genome Aligments eval_tblastx=1e-10 #tBlastx eval cutoff bit_tblastx=40 #tBlastx bit cutoff depth_tblastx=0 #tBlastx depth cutoff (0 to disable cutoff) pcov_rm_blastx=0.5 #Blastx Percent Coverage Threhold For Transposable Element Masking pid_rm_blastx=0.4 #Blastx Percent Identity Threshold For Transposbale Element Masking eval_rm_blastx=1e-06 #Blastx eval cutoff for transposable element masking bit_rm_blastx=30 #Blastx bit cutoff for transposable element masking ep_score_limit=20 #Exonerate protein percent of maximal score threshold en_score_limit=20 #Exonerate nucleotide percent of maximal score threshold