# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[9..37]--> unknown_B (12) <--[0..24]--> unknown_C (31) <--[0..3]--> unknown_D (14) <--[0..1]--> unknown_E (20) <--[0..1]--> unknown_F (20) <--[4..39]--> unknown_G (32) <--[0..2]--> unknown_H (12) <--[17..29]--> unknown_J (25) <--[0..416]--
# fly version. Using default transition matrix.
# Looks like ./tmp/Contig6524520180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 6354, name = Contig65245) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370VUX.prfl --predictionStart=0  --predictionEnd=24855  --species=fly ./tmp/Contig6524520180911_busco_2432604931_.temp