# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[14..135]--> unknown_A (11) <--[0..9]--> unknown_B (16) <--[2..36]--> unknown_C (17) <--[1..61]--> unknown_D (18) <--[0..8]--> unknown_E (17) <--[2..12]--> unknown_F (28) <--[0..26]--> unknown_G (21) <--[0..11]--> unknown_H (27) <--[15..45]--> unknown_I (38) <--[8..83]--> unknown_J (16) <--[5..25]--> unknown_K (11) <--[10..27]--
# fly version. Using default transition matrix.
# Looks like ./tmp/Contig3228420180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 16469, name = Contig32284) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370TFO.prfl --predictionStart=0  --predictionEnd=32616  --species=fly ./tmp/Contig3228420180911_busco_2432604931_.temp