# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[2..45]--> unknown_A (26) <--[0..22]--> unknown_B (7) <--[0..2]--> unknown_C (17) <--[6..8]--> unknown_D (13) <--[14..49]--> unknown_F (19) <--[0..3]--> unknown_G (68) <--[11..40]--> unknown_H (56) <--[0..26]--> unknown_I (21) <--[35..198]--> unknown_K (13) <--[2..18]--> unknown_L (36) <--[10..16]--> unknown_M (22) <--[30..449]--
# fly version. Using default transition matrix.
# Looks like ./tmp/Contig1614120180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 3199, name = Contig16141) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370SYK.prfl --predictionStart=0  --predictionEnd=20851  --species=fly ./tmp/Contig1614120180911_busco_2432604931_.temp