# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[4..89]--> unknown_A (23) <--[8..32]--> unknown_C (10) <--[13..101]--> unknown_E (13) <--[9..14]--> unknown_G (13) <--[1..9]--> unknown_H (35) <--[10..46]--> unknown_I (15) <--[2..6]--> unknown_J (26) <--[12..125]--> unknown_L (44) <--[6..32]--> unknown_N (33) <--[0..166]--
# BUSCO_20180911_busco_2432604931 version. Using default transition matrix.
# admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0)
# Looks like ./tmp/Contig13683620180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 3919, name = Contig136836) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370QI4.prfl --predictionStart=0  --predictionEnd=21887  --species=BUSCO_20180911_busco_2432604931 ./tmp/Contig13683620180911_busco_2432604931_.temp