# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[0..43]--> unknown_A (13) <--[0..2]--> unknown_B (10) <--[0..1]--> unknown_C (14) <--[0..1]--> unknown_D (11) <--[1..18]--> unknown_E (36) <--[9..62]--> unknown_G (21) <--[7..12]--> unknown_H (9) <--[0..9]--> unknown_I (14) <--[2..79]--> unknown_J (14) <--[29..474]--> unknown_M (12) <--[9..18]--> unknown_N (17) <--[10..38]--> unknown_P (32) <--[0..1]--> unknown_Q (19) <--[1..40]--
# fly version. Using default transition matrix.
# Looks like ./tmp/Contig1811720180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 5448, name = Contig18117) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370PN3.prfl --predictionStart=0  --predictionEnd=20869  --species=fly ./tmp/Contig1811720180911_busco_2432604931_.temp