# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), # Using native and syntenically mapped cDNA alignments to improve de novo gene finding # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 # No extrinsic information on sequences given. # Initialising the parameters using config directory /augustus/config/ ... # Using protein profile unknown # --[0..99]--> unknown_A (15) <--[1..23]--> unknown_B (11) <--[0..1]--> unknown_C (24) <--[1..11]--> unknown_D (10) <--[0..2]--> unknown_E (26) <--[2..15]--> unknown_F (13) <--[3..8]--> unknown_G (43) <--[1..7]--> unknown_H (42) <--[0..1]--> unknown_I (16) <--[2..4]--> unknown_J (37) <--[0..326]-- # BUSCO_20180911_busco_2432604931 version. Using default transition matrix. # admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0) # Looks like ./tmp/Contig13785320180911_busco_2432604931_.temp is in fasta format. # We have hints for 0 sequences and for 0 of the sequences in the input set. # # ----- prediction on sequence number 1 (length = 4145, name = Contig137853) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 1 on both strands # (none) # command line: # /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370O51.prfl --predictionStart=0 --predictionEnd=22168 --species=BUSCO_20180911_busco_2432604931 ./tmp/Contig13785320180911_busco_2432604931_.temp