# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[0..130]--> unknown_A (7) <--[12..29]--> unknown_C (18) <--[0..16]--> unknown_D (25) <--[2..43]--> unknown_E (41) <--[0..16]--> unknown_F (19) <--[4..38]--> unknown_G (24) <--[18..59]--> unknown_H (26) <--[19..35]--> unknown_K (14) <--[0..2]--> unknown_L (13) <--[4..36]--> unknown_M (13) <--[10..32]--> unknown_N (11) <--[0..2]--> unknown_O (45) <--[0..18]--> unknown_P (46) <--[65..186]--> unknown_V (17) <--[19..79]--> unknown_Y (18) <--[31..177]--> unknown_AA (14) <--[0..9]--
# BUSCO_20180911_busco_2432604931 version. Using default transition matrix.
# admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0)
# Looks like ./tmp/Contig8286920180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 5753, name = Contig82869) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370KM9.prfl --predictionStart=0  --predictionEnd=22796  --species=BUSCO_20180911_busco_2432604931 ./tmp/Contig8286920180911_busco_2432604931_.temp