# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[0..891]--> unknown_A (12) <--[9..16]--> unknown_C (22) <--[5..40]--> unknown_D (20) <--[0..2]--> unknown_E (26) <--[0..23]--> unknown_F (22) <--[2..26]--> unknown_G (23) <--[0..11]--> unknown_H (31) <--[3..107]--> unknown_I (15) <--[0..36]--> unknown_J (17) <--[1..2]--> unknown_K (27) <--[0..1]--> unknown_L (12) <--[0..6]--> unknown_M (13) <--[1..54]--> unknown_N (13) <--[0..17]--> unknown_O (10) <--[0..103]--
# fly version. Using default transition matrix.
# Looks like ./tmp/Contig16370320180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 2232, name = Contig163703) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370J9L.prfl --predictionStart=0  --predictionEnd=21131  --species=fly ./tmp/Contig16370320180911_busco_2432604931_.temp