# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[0..28]--> unknown_A (30) <--[0..13]--> unknown_B (9) <--[1..3]--> unknown_C (32) <--[0..18]--> unknown_D (21) <--[1..23]--> unknown_E (30) <--[1..14]--> unknown_F (13) <--[0..11]--> unknown_G (22) <--[0..1]--> unknown_H (13) <--[3..12]--> unknown_I (69) <--[0..17]--> unknown_J (26) <--[0..1]--> unknown_K (6) <--[12..88]--
# fly version. Using default transition matrix.
# Looks like ./tmp/Contig8757120180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 9756, name = Contig87571) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370H3E.prfl --predictionStart=0  --predictionEnd=28211  --species=fly ./tmp/Contig8757120180911_busco_2432604931_.temp