# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[0..43]--> unknown_A (19) <--[1..19]--> unknown_B (37) <--[0..5]--> unknown_C (40) <--[2..93]--> unknown_D (38) <--[0..36]--> unknown_E (16) <--[0..1]--> unknown_F (23) <--[0..21]--> unknown_G (22) <--[1..38]--> unknown_H (18) <--[0..9]--> unknown_I (15) <--[0..63]--> unknown_J (33) <--[1..5]--> unknown_K (23) <--[12..86]--> unknown_M (54) <--[0..1]--> unknown_N (54) <--[0..20]--
# fly version. Using default transition matrix.
# Looks like ./tmp/Contig17316720180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 4525, name = Contig173167) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370GJ7.prfl --predictionStart=0  --predictionEnd=24482  --species=fly ./tmp/Contig17316720180911_busco_2432604931_.temp