# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[0..203]--> unknown_A (46) <--[0..1]--> unknown_B (26) <--[0..18]--> unknown_C (36) <--[15..36]--> unknown_F (12) <--[2..5]--> unknown_G (14) <--[0..17]--> unknown_H (81) <--[5..9]--> unknown_I (24) <--[0..22]--> unknown_J (15) <--[0..1]--> unknown_K (29) <--[68..223]--> unknown_Q (29) <--[10..60]--
# fly version. Using default transition matrix.
# Looks like ./tmp/Contig1851620180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 24616, name = Contig18516) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370EHZ.prfl --predictionStart=0  --predictionEnd=35336  --species=fly ./tmp/Contig1851620180911_busco_2432604931_.temp