# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[10..108]--> unknown_A (66) <--[3..5]--> unknown_B (27) <--[2..5]--> unknown_C (47) <--[1..46]--> unknown_D (20) <--[0..5]--> unknown_E (24) <--[0..67]--> unknown_F (21) <--[4..13]--> unknown_G (83) <--[16..40]--> unknown_H (12) <--[6..12]--> unknown_I (23) <--[0..2]--> unknown_J (28) <--[0..44]--
# fly version. Using default transition matrix.
# Looks like ./tmp/Contig15245520180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 5303, name = Contig152455) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370CAN.prfl --predictionStart=0  --predictionEnd=25256  --species=fly ./tmp/Contig15245520180911_busco_2432604931_.temp