# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[0..139]--> unknown_A (12) <--[0..13]--> unknown_B (33) <--[1..14]--> unknown_C (25) <--[9..17]--> unknown_E (13) <--[2..56]--> unknown_F (23) <--[8..26]--> unknown_H (25) <--[3..4]--> unknown_I (18) <--[0..40]--> unknown_J (19) <--[1..4]--> unknown_K (17) <--[1..30]--> unknown_L (14) <--[8..76]--> unknown_M (46) <--[5..87]--> unknown_N (28) <--[0..14]--> unknown_O (19) <--[3..15]--> unknown_P (8) <--[0..3]--> unknown_Q (15) <--[0..1]--
# BUSCO_20180911_busco_2432604931 version. Using default transition matrix.
# admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0)
# Looks like ./tmp/Contig9711220180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 10023, name = Contig97112) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG09370B65.prfl --predictionStart=0  --predictionEnd=20572  --species=BUSCO_20180911_busco_2432604931 ./tmp/Contig9711220180911_busco_2432604931_.temp