# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), # Using native and syntenically mapped cDNA alignments to improve de novo gene finding # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 # No extrinsic information on sequences given. # Initialising the parameters using config directory /augustus/config/ ... # Using protein profile unknown # --[0..264]--> unknown_A (37) <--[2..5]--> unknown_B (28) <--[0..4]--> unknown_C (21) <--[6..8]--> unknown_D (13) <--[10..24]--> unknown_F (12) <--[0..2]--> unknown_G (14) <--[6..15]--> unknown_I (29) <--[0..1]--> unknown_J (28) <--[1..2]--> unknown_K (25) <--[0..5]--> unknown_L (25) <--[0..1]--> unknown_M (20) <--[3..96]--> unknown_N (25) <--[2..25]--> unknown_O (20) <--[0..6]--> unknown_P (8) <--[3..14]--> unknown_Q (24) <--[0..6]--> unknown_R (27) <--[14..58]--> unknown_S (40) <--[0..123]--> unknown_T (13) <--[14..41]--> unknown_V (20) <--[0..3]-- # fly version. Using default transition matrix. # Looks like ./tmp/Contig3487720180911_busco_2432604931_.temp is in fasta format. # We have hints for 0 sequences and for 0 of the sequences in the input set. # # ----- prediction on sequence number 1 (length = 38006, name = Contig34877) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 1 on both strands # start gene g1 Contig34877 AUGUSTUS gene 6736 35784 0.01 + . g1 Contig34877 AUGUSTUS transcript 6736 35784 0.01 + . g1.t1 Contig34877 AUGUSTUS tss 6736 6736 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 6736 6846 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 7513 7652 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS start_codon 7560 7562 . + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 7653 7815 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 7908 8304 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 8420 9068 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 9088 9816 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 9855 9940 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 9958 10089 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 10143 10528 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 10571 10645 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 10677 10741 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 10759 11732 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 11755 12522 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 12538 12646 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 12662 12713 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 12731 12785 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 12797 13023 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 13040 13129 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 13142 13273 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 13297 13593 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 13607 13717 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 13743 14446 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 14471 14573 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 14589 15300 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 15311 15429 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 15469 16337 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 16432 16881 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 17034 17211 0.03 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 17273 17785 0.02 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 18005 18489 0.24 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 18606 18693 0.03 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 18820 18927 0.02 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 19044 23889 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS intron 24125 35563 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 7560 7652 0.06 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 7816 7907 0.01 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 7816 7907 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 8305 8419 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 8305 8419 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 9069 9087 0.01 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 9069 9087 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 9817 9854 0.01 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 9817 9854 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 9941 9957 0.01 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 9941 9957 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 10090 10142 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 10090 10142 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 10529 10570 0.01 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 10529 10570 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 10646 10676 0.01 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 10646 10676 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 10742 10758 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 10742 10758 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 11733 11754 0.01 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 11733 11754 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 12523 12537 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 12523 12537 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 12647 12661 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 12647 12661 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 12714 12730 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 12714 12730 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 12786 12796 0.01 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 12786 12796 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 13024 13039 0.01 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 13024 13039 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 13130 13141 0.01 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 13130 13141 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 13274 13296 0.01 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 13274 13296 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 13594 13606 0.01 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 13594 13606 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 13718 13742 0.01 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 13718 13742 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 14447 14470 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 14447 14470 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 14574 14588 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 14574 14588 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 15301 15310 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 15301 15310 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 15430 15468 0.01 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 15430 15468 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 16338 16431 0.01 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 16338 16431 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 16882 17033 0.01 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 16882 17033 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 17212 17272 0.03 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 17212 17272 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 17786 18004 0.07 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 17786 18004 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 18490 18605 0.05 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 18490 18605 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 18694 18819 0.03 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 18694 18819 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 18928 19043 0.03 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 18928 19043 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 23890 24124 0.01 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 23890 24124 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS CDS 35564 35665 0.01 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS exon 35564 35784 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS stop_codon 35663 35665 . + 0 transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS tts 35784 35784 . + . transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 7614 7652 6.81 + 0 target "unknown_A[1..13]"; target_start 18; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 7816 7887 5.89 + 0 target "unknown_A[14..37]"; target_start 18; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 7900 7907 1.23 + 0 target "unknown_B[1..3]"; target_start 59; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 8305 8380 7.91 + 1 target "unknown_B[3..28]"; target_start 59; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 8381 8419 11.4 + 0 target "unknown_C[1..13]"; target_start 87; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 9069 9087 1.67 + 2 target "unknown_C[14..20]"; target_start 86; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 9817 9821 0.148 + 2 target "unknown_C[20..21]"; target_start 87; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 9843 9854 2.39 + 0 target "unknown_D[1..4]"; target_start 115; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 9941 9957 1.59 + 2 target "unknown_D[5..10]"; target_start 114; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 10090 10099 0.969 + 1 target "unknown_D[10..13]"; target_start 115; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 10136 10142 1.77 + 0 target "unknown_F[1..3]"; target_start 140; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 10529 10557 1.67 + 2 target "unknown_F[3..12]"; target_start 140; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 10558 10570 0.822 + 0 target "unknown_G[1..5]"; target_start 152; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 10646 10674 1.82 + 2 target "unknown_G[5..14]"; target_start 152; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 10758 10758 1 + 0 target "unknown_I[1..1]"; target_start 172; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 11733 11754 1.94 + 1 target "unknown_I[1..8]"; target_start 171; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 12523 12537 1.73 + 0 target "unknown_I[9..13]"; target_start 171; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 12647 12661 1.01 + 0 target "unknown_I[14..18]"; target_start 171; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 12714 12730 1.27 + 0 target "unknown_I[19..24]"; target_start 171; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 12786 12796 0.966 + 1 target "unknown_I[24..28]"; target_start 171; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 13024 13029 0.605 + 0 target "unknown_I[28..29]"; target_start 172; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 13033 13039 0.523 + 0 target "unknown_J[1..3]"; target_start 202; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 13130 13141 0.619 + 1 target "unknown_J[3..7]"; target_start 201; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 13274 13296 1.1 + 1 target "unknown_J[7..15]"; target_start 201; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 13594 13606 0.492 + 2 target "unknown_J[15..19]"; target_start 201; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 13718 13742 1.38 + 1 target "unknown_J[19..27]"; target_start 201; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 14447 14450 0.171 + 1 target "unknown_J[27..28]"; target_start 202; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 14454 14470 1.2 + 0 target "unknown_K[1..6]"; target_start 231; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 14574 14588 1.42 + 0 target "unknown_K[7..11]"; target_start 230; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 15301 15310 1.05 + 0 target "unknown_K[12..15]"; target_start 230; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 15430 15462 1.6 + 0 target "unknown_K[15..25]"; target_start 231; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 15466 15468 0.877 + 0 target "unknown_L[1..1]"; target_start 257; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 16338 16409 5.99 + 0 target "unknown_L[2..25]"; target_start 257; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 16410 16431 3.73 + 0 target "unknown_M[1..8]"; target_start 282; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 16882 16919 4.62 + 2 target "unknown_M[8..20]"; target_start 282; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 16989 17033 7.78 + 0 target "unknown_N[1..15]"; target_start 325; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 17212 17241 3.88 + 0 target "unknown_N[16..25]"; target_start 325; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 17260 17272 5.26 + 0 target "unknown_O[1..5]"; target_start 356; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 17786 17832 7.25 + 2 target "unknown_O[5..20]"; target_start 356; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 17845 17868 13 + 0 target "unknown_P[1..8]"; target_start 380; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 17899 17970 6.66 + 0 target "unknown_Q[1..24]"; target_start 398; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 17971 18004 9.29 + 0 target "unknown_R[1..12]"; target_start 422; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 18490 18536 6.76 + 2 target "unknown_R[12..27]"; target_start 422; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 18745 18819 3.56 + 0 target "unknown_S[1..25]"; target_start 489; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 18928 18972 6.74 + 0 target "unknown_S[26..40]"; target_start 489; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 24065 24103 6.04 + 0 target "unknown_T[1..13]"; target_start 611; transcript_id "g1.t1"; gene_id "g1"; Contig34877 AUGUSTUS protein_match 35603 35662 10.3 + 0 target "unknown_V[1..20]"; target_start 644; transcript_id "g1.t1"; gene_id "g1"; # coding sequence = [atgaatgggcaagggagctgtaaacacatcaatggaaggggagacaaccaagaaagggtggccatattggatgcagggg # cccagtatggcaaggtcattgacaggagagtacgagagctgaatgtagaatctcagattctgccattagacacgccagcatttgcattgaaagaggga # gcttatactgccatcattatatcggggggacctaactctgtctatgctgaagacgctccaaggtacgaccctgatatttttacatgtggactaccagt # gttgggcatctgttatggaatgcagagcttggcactgcggcactttgaagataaaaaaaagtttgtttgctctagagagaagggattctatgaagttc # aaatgatacgtctgcattcagcccacgcattcacacaattggcaataatgacagaatggagcggtcattcggatgagacagaaaaccgaggtccgtcc # tttaccgtaatggtgacgtctccatatgaccacaaaaaacggattaatgctgaacaaagaatttggtgcaaacaattttttttctgggtgattttggg # tgaaactggaacacctatgttggaactgataatcttaaacagtgtgtcttatcatgtgaaattcaccgctcattcaactatgcaacactctcttcagc # gtatagttggtacatacagggggagggggtatctcatgctgagacacggtggccaaagaagttgtatgtgtctgaaatacatcaaggaagtcacagga # gatcacaaagttatagccgtccacatagacaacggcttcatgaggaaaaacgagagccacaatgtggtacagtccctcagcaaaatagggcttaatgt # caaagttataaaagcggcccacactttttataatggttccacttcaatatctgtaaagactggggattcaactccacgtaaacgaaagacagagagac # taaatactgttgtatgtccagaagaaaaaaggaaaatcattggagatacattcatgaaagtagccaacgaagtaatagaggaattaaatttaaaacca # gaggatgtttacttaggccaaggaacgttaaggccagacttgatagagagtgcttcagaaatggccagtggtaaagcggatgccataaaaacgcacca # taatgacacagagctggtgagagagctacgcagacaaggtcgtgtggtggaaccactcaaagatttccacaaagatgaggtccgcaccattgggaaag # acttgggtcttccacatgatcttgtcaatagacaccccttcccagggccgggactttccattcgtgttatatgtgcagaagaaccatatatgtgtaaa # gactttgctgaaactagtgttttgctcaaatttttgttggacttctcaaattcagtgaaaactccacatactttaataacaaggctgaagaacagtac # gtctgaacaggaacaagaacaactgaagcagattagtgaagagtctcagctgttttcctcattgttaccaatcaaaactgtcggtgttcagggagatt # gtaggtcctatagttatgtggtggggatatccagtgatagtgaaccaaactggaagaacctgatggtattagccaaactcataccaagaatctgccat # aatatcaatagcggcgtgttgagcaccctgaggcaggccgactacctggcgacagatgtgttacagaccacagacaccacagccaaactcagccagat # gcctgttattatcatacctgtccacttcgacagggaccctgtcaaaaacattccttcttgtcaaaggtctatagtgattaggacatttataaccaatg # attttatgactgggattgcagccacaccaaatgaacattttcctgctcaggttttgaaccagatggtagaaagaatctccacagtgccaggtatatcc # agagtattgtatgacctgacttccaaacctccaggaaccacagaatgggaatag] # protein sequence = [MNGQGSCKHINGRGDNQERVAILDAGAQYGKVIDRRVRELNVESQILPLDTPAFALKEGAYTAIIISGGPNSVYAEDA # PRYDPDIFTCGLPVLGICYGMQSLALRHFEDKKKFVCSREKGFYEVQMIRLHSAHAFTQLAIMTEWSGHSDETENRGPSFTVMVTSPYDHKKRINAEQ # RIWCKQFFFWVILGETGTPMLELIILNSVSYHVKFTAHSTMQHSLQRIVGTYRGRGYLMLRHGGQRSCMCLKYIKEVTGDHKVIAVHIDNGFMRKNES # HNVVQSLSKIGLNVKVIKAAHTFYNGSTSISVKTGDSTPRKRKTERLNTVVCPEEKRKIIGDTFMKVANEVIEELNLKPEDVYLGQGTLRPDLIESAS # EMASGKADAIKTHHNDTELVRELRRQGRVVEPLKDFHKDEVRTIGKDLGLPHDLVNRHPFPGPGLSIRVICAEEPYMCKDFAETSVLLKFLLDFSNSV # KTPHTLITRLKNSTSEQEQEQLKQISEESQLFSSLLPIKTVGVQGDCRSYSYVVGISSDSEPNWKNLMVLAKLIPRICHNINSGVLSTLRQADYLATD # VLQTTDTTAKLSQMPVIIIPVHFDRDPVKNIPSCQRSIVIRTFITNDFMTGIAATPNEHFPAQVLNQMVERISTVPGISRVLYDLTSKPPGTTEWE] # sequence of block unknown_A 18 [RVAILDAGAQYGKVIDRRVRELNVESQILPLDTPAFA] 55 # sequence of block unknown_B 59 [AYTAIIISGGPNSVYAEDAPRYDPDIFT] 87 # sequence of block unknown_C 87 [CGLPVLGICYGMQSLALRHFE] 108 # sequence of block unknown_D 115 [SREKGFYEVQMIR] 128 # sequence of block unknown_F 140 [MTEWSGHSDETE] 152 # sequence of block unknown_G 152 [NRGPSFTVMVTSPY] 166 # sequence of block unknown_I 172 [NAEQRIWCKQFFFWVILGETGTPMLELII] 201 # sequence of block unknown_J 202 [NSVSYHVKFTAHSTMQHSLQRIVGTYRG] 230 # sequence of block unknown_K 231 [GYLMLRHGGQRSCMCLKYIKEVTGD] 256 # sequence of block unknown_L 257 [KVIAVHIDNGFMRKNESHNVVQSLS] 282 # sequence of block unknown_M 282 [KIGLNVKVIKAAHTFYNGST] 302 # sequence of block unknown_N 325 [CPEEKRKIIGDTFMKVANEVIEELN] 350 # sequence of block unknown_O 356 [YLGQGTLRPDLIESASEMAS] 376 # sequence of block unknown_P 380 [AIKTHHND] 388 # sequence of block unknown_Q 398 [GRVVEPLKDFHKDEVRTIGKDLGL] 422 # sequence of block unknown_R 422 [PHDLVNRHPFPGPGLSIRVICAEEPYM] 449 # sequence of block unknown_S 489 [EQLKQISEESQLFSSLLPIKTVGVQGDCRSYSYVVGISSD] 529 # sequence of block unknown_T 611 [ITNDFMTGIAATP] 624 # sequence of block unknown_V 644 [GISRVLYDLTSKPPGTTEWE] 664 # end gene g1 ### # command line: # /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG093708TP.prfl --predictionStart=0 --predictionEnd=38006 --species=fly ./tmp/Contig3487720180911_busco_2432604931_.temp