# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[2..74]--> unknown_A (12) <--[0..2]--> unknown_B (6) <--[15..33]--> unknown_D (26) <--[2..26]--> unknown_E (19) <--[18..37]--> unknown_G (19) <--[1..5]--> unknown_H (23) <--[3..29]--> unknown_I (28) <--[21..46]--> unknown_K (16) <--[0..3]--> unknown_L (28) <--[0..26]--> unknown_M (10) <--[1..1]--> unknown_N (24) <--[43..113]--> unknown_Q (22) <--[56..104]--> unknown_U (42) <--[0..3]--> unknown_V (26) <--[0..12]--> unknown_W (22) <--[1..16]--> unknown_X (28) <--[5..9]--> unknown_Y (24) <--[1..7]--> unknown_Z (12) <--[1..5]--> unknown_AA (16) <--[8..36]--> unknown_AC (61) <--[0..1]--> unknown_AD (49) <--[0..124]--
# BUSCO_20180911_busco_2432604931 version. Using default transition matrix.
# admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0)
# Looks like ./tmp/Contig19564020180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 3234, name = Contig195640) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG093707VN.prfl --predictionStart=0  --predictionEnd=23046  --species=BUSCO_20180911_busco_2432604931 ./tmp/Contig19564020180911_busco_2432604931_.temp