# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[2..124]--> unknown_A (10) <--[0..6]--> unknown_B (16) <--[0..4]--> unknown_C (22) <--[0..4]--> unknown_D (19) <--[0..13]--> unknown_E (41) <--[0..34]--> unknown_F (22) <--[0..1]--> unknown_G (9) <--[7..9]--> unknown_I (20) <--[12..54]--> unknown_K (27) <--[4..13]--> unknown_L (28) <--[3..8]--> unknown_M (60) <--[0..1]--> unknown_N (91) <--[9..30]--> unknown_P (16) <--[14..100]--> unknown_Q (12) <--[12..175]--> unknown_R (38) <--[20..65]--> unknown_T (19) <--[9..17]--> unknown_U (21) <--[6..43]--
# BUSCO_20180911_busco_2432604931 version. Using default transition matrix.
# admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0)
# Looks like ./tmp/Contig6381520180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 5494, name = Contig63815) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# (none)
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG093707HK.prfl --predictionStart=0  --predictionEnd=24688  --species=BUSCO_20180911_busco_2432604931 ./tmp/Contig6381520180911_busco_2432604931_.temp