# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), # Using native and syntenically mapped cDNA alignments to improve de novo gene finding # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 # No extrinsic information on sequences given. # Initialising the parameters using config directory /augustus/config/ ... # Using protein profile unknown # --[0..64]--> unknown_A (15) <--[9..34]--> unknown_C (20) <--[9..12]--> unknown_E (11) <--[28..89]--> unknown_I (10) <--[28..61]--> unknown_M (23) <--[0..1]--> unknown_N (18) <--[1..16]--> unknown_O (39) <--[3..17]--> unknown_P (13) <--[0..12]--> unknown_Q (16) <--[12..40]--> unknown_S (17) <--[0..1]--> unknown_T (12) <--[1..11]--> unknown_U (24) <--[7..19]--> unknown_W (32) <--[0..26]--> unknown_X (17) <--[0..33]--> unknown_Y (35) <--[0..16]--> unknown_Z (20) <--[0..1]--> unknown_AA (19) <--[1..43]--> unknown_AB (23) <--[0..1]--> unknown_AC (13) <--[9..18]--> unknown_AE (18) <--[0..1]--> unknown_AF (24) <--[0..8]--> unknown_AG (8) <--[0..2]--> unknown_AH (7) <--[0..1]--> unknown_AI (70) <--[29..75]--> unknown_AL (38) <--[48..106]--> unknown_AO (19) <--[1..17]--> unknown_AP (35) <--[0..91]-- # fly version. Using default transition matrix. # Looks like ./tmp/Contig2831420180911_busco_2432604931_.temp is in fasta format. # We have hints for 0 sequences and for 0 of the sequences in the input set. # # ----- prediction on sequence number 1 (length = 32039, name = Contig28314) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 1 on both strands # start gene g1 Contig28314 AUGUSTUS gene 20135 23549 0.02 - . g1 Contig28314 AUGUSTUS transcript 20135 23549 0.02 - . g1.t1 Contig28314 AUGUSTUS tts 20135 20135 . - . transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS exon 20135 21406 . - . transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS stop_codon 21151 21153 . - 0 transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS intron 21407 21933 0.55 - . transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS intron 22128 22478 0.95 - . transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS intron 22874 23232 0.83 - . transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS CDS 21151 21406 0.52 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS CDS 21934 22127 0.8 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS exon 21934 22127 . - . transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS CDS 22479 22873 0.94 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS exon 22479 22873 . - . transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS CDS 23233 23335 0.22 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS exon 23233 23400 . - . transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS start_codon 23333 23335 . - 0 transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS exon 23513 23549 . - . transcript_id "g1.t1"; gene_id "g1"; Contig28314 AUGUSTUS tss 23549 23549 . - . transcript_id "g1.t1"; gene_id "g1"; # coding sequence = [atggaccaaagccaagtcacggacaagatcgagcagatttttgatattcaggggccttccccaagcaaaaaacattgtc # caggagaagagtcttctgacaaaggtatcgatggaaatcatgaagaagagaaaaatgatgatacagagggagttgattatgaggagttaaggcctacc # cttactcacgaagctttgtgtttcctgattgacatgaaactgatgaagcatgtgatcagtcagaatggcgatggccttcacggtctgtcaggaatttc # ccaggaaaatctttcagagctccacggaaatgtattccatgagaagtgtgagaaatgtggccataggtatgaccgctccttctatgtgatggacgatg # agagcagtcagtactatgaggatgtagaggattatgggaaatcggaagtaaagaaaccaaggcatgctaagcggtgtgaaacatgtggattatctcac # agaacgggcaggaagtgtgaacagaagggctgcagtggattcttgatggacactattattaactttggggataatttagaggaggacatactgtccag # agccttcagccaggcctacgaatgtgacctgatgatcggtctaggcaccactcttacggtaacccctgccaacgagctggtggaagttatcaaaaaac # cgcaacgccttgtcatatgtaatagtgctttctttggatttagacaaaagacggattatgataaagactgcctcaggaaactcccgggagccgatcag # agtgtgggcaggaaactcccgggagccgatcagagtgtgggcagtcgtgtgcacggagattgtgacgttttcatgcgggaggtgctcaagaacatcgt # aggagaggaaaaactgaagagctgggagagggacagacaaacgagaatgatcagctataacaagcagcgccaacagactagttaa] # protein sequence = [MDQSQVTDKIEQIFDIQGPSPSKKHCPGEESSDKGIDGNHEEEKNDDTEGVDYEELRPTLTHEALCFLIDMKLMKHVI # SQNGDGLHGLSGISQENLSELHGNVFHEKCEKCGHRYDRSFYVMDDESSQYYEDVEDYGKSEVKKPRHAKRCETCGLSHRTGRKCEQKGCSGFLMDTI # INFGDNLEEDILSRAFSQAYECDLMIGLGTTLTVTPANELVEVIKKPQRLVICNSAFFGFRQKTDYDKDCLRKLPGADQSVGRKLPGADQSVGSRVHG # DCDVFMREVLKNIVGEEKLKSWERDRQTRMISYNKQRQQTS] # end gene g1 ### # start gene g2 Contig28314 AUGUSTUS gene 24420 35476 0.01 + . g2 Contig28314 AUGUSTUS transcript 24420 35476 0.01 + . g2.t1 Contig28314 AUGUSTUS tss 24420 24420 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 24420 24650 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS start_codon 24507 24509 . + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 24651 25718 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 25747 26559 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 26634 26697 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 26741 27566 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 27666 28139 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 28328 28657 0.89 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 28791 29062 0.84 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 29239 29463 0.88 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 29585 29715 0.28 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 29869 30120 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 30135 30187 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 30198 30505 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 30661 30954 0.93 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 31067 31234 0.16 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 31401 32031 0.21 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 32221 32628 0.99 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 32853 33131 0.78 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 33263 33540 0.05 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 33661 33985 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 34059 34403 0.01 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS intron 34592 35172 0.1 + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 24507 24650 0.01 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 25719 25746 0.01 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 25719 25746 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 26560 26633 0.01 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 26560 26633 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 26698 26740 0.01 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 26698 26740 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 27567 27665 0.01 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 27567 27665 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 28140 28327 0.01 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 28140 28327 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 28658 28790 0.89 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 28658 28790 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 29063 29238 0.84 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 29063 29238 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 29464 29584 0.9 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 29464 29584 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 29716 29868 0.28 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 29716 29868 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 30121 30134 0.01 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 30121 30134 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 30188 30197 0.01 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 30188 30197 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 30506 30660 0.93 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 30506 30660 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 30955 31066 0.93 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 30955 31066 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 31235 31400 0.16 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 31235 31400 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 32032 32220 0.21 + 1 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 32032 32220 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 32629 32852 0.99 + 1 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 32629 32852 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 33132 33262 0.08 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 33132 33262 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 33541 33660 0.05 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 33541 33660 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 33986 34058 0.01 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 33986 34058 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 34404 34591 0.11 + 2 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 34404 34591 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS CDS 35173 35322 0.13 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS exon 35173 35476 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS stop_codon 35320 35322 . + 0 transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS tts 35476 35476 . + . transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 24519 24563 4.95 + 0 target "unknown_A[1..15]"; target_start 4; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 24597 24650 5.2 + 0 target "unknown_C[1..18]"; target_start 30; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 25719 25724 5.38 + 0 target "unknown_C[19..20]"; target_start 30; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 26565 26597 3.45 + 0 target "unknown_E[1..11]"; target_start 59; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 27575 27604 3.85 + 0 target "unknown_I[1..10]"; target_start 99; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 28175 28243 5.82 + 0 target "unknown_M[1..23]"; target_start 141; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 28247 28300 4.38 + 0 target "unknown_N[1..18]"; target_start 165; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 28304 28327 4.42 + 0 target "unknown_O[1..8]"; target_start 184; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 28658 28750 5.32 + 0 target "unknown_O[9..39]"; target_start 184; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 28763 28790 6.58 + 0 target "unknown_P[1..10]"; target_start 227; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 29063 29073 7.3 + 2 target "unknown_P[10..13]"; target_start 227; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 29077 29124 4.82 + 0 target "unknown_Q[1..16]"; target_start 241; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 29170 29220 4.3 + 0 target "unknown_S[1..17]"; target_start 272; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 29221 29238 7.57 + 0 target "unknown_T[1..6]"; target_start 289; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 29464 29481 6.65 + 0 target "unknown_T[7..12]"; target_start 289; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 29485 29556 4.75 + 0 target "unknown_U[1..24]"; target_start 302; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 29718 29813 3.23 + 0 target "unknown_W[1..32]"; target_start 336; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 29856 29868 0.751 + 0 target "unknown_X[1..5]"; target_start 382; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 30121 30134 3.27 + 1 target "unknown_X[5..10]"; target_start 381; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 30188 30197 1.37 + 2 target "unknown_X[10..13]"; target_start 381; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 30506 30519 2.26 + 2 target "unknown_X[13..17]"; target_start 382; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 30520 30624 4.26 + 0 target "unknown_Y[1..35]"; target_start 399; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 30646 30660 1.15 + 0 target "unknown_Z[1..5]"; target_start 441; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 30955 30999 7.83 + 0 target "unknown_Z[6..20]"; target_start 441; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 31000 31056 6.24 + 0 target "unknown_AA[1..19]"; target_start 461; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 31066 31066 1 + 0 target "unknown_AB[1..1]"; target_start 483; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 31235 31302 4.19 + 2 target "unknown_AB[1..23]"; target_start 483; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 31303 31341 2.33 + 0 target "unknown_AC[1..13]"; target_start 506; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 31369 31400 3.2 + 0 target "unknown_AE[1..11]"; target_start 528; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 32032 32053 3.49 + 1 target "unknown_AE[11..18]"; target_start 528; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 32054 32125 4.82 + 0 target "unknown_AF[1..24]"; target_start 546; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 32126 32149 2.71 + 0 target "unknown_AG[1..8]"; target_start 570; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 32150 32170 8.07 + 0 target "unknown_AH[1..7]"; target_start 578; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 32174 32220 8.51 + 0 target "unknown_AI[1..16]"; target_start 586; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 32629 32791 4.01 + 1 target "unknown_AI[16..70]"; target_start 586; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 33188 33262 6.48 + 0 target "unknown_AL[1..25]"; target_start 695; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 33541 33579 6.8 + 0 target "unknown_AL[26..38]"; target_start 695; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 34421 34477 4.12 + 0 target "unknown_AO[1..19]"; target_start 790; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 34499 34591 2.62 + 0 target "unknown_AP[1..31]"; target_start 816; transcript_id "g2.t1"; gene_id "g2"; Contig28314 AUGUSTUS protein_match 35173 35184 6.68 + 0 target "unknown_AP[32..35]"; target_start 816; transcript_id "g2.t1"; gene_id "g2"; # coding sequence = [atgccaacgggaagcaaaatattttcaggatatcgagcacttggttttgttagcgatcatgtgcctcttgcatctcgat # acaacaagagactaaaagataattacgtaatcacaagcgtggggaaggccttccacacttacaactgttccaagttaggaataaccaacataagtgat # cgacacccagacaacataagctgtatcgccgttaccaatagatacgtgttcactgggtgtggtaaagagaaaatgaaagccagtgattcgattgttgt # catagtgatgaaaggacacacaaatgaagttcacctccttcttccatttggaagccatcttatctccgtggacattcacagtaatctgaagatttggg # atgttgaaaatggaggtgtgtacctggagatggagtttagtaactccacattccacattacggccattatgcaccccagcacgtatctaaacaaagtc # gtcctcgggagcaagcagggcacgcttcaactgtggaacatcctgaaagacaagatgctgtattccttcgatggctggagtagctcagtcacagttct # acagcagtctcctgctgttgacgttattgctgtaggattgtctgacggaaggacgattttacacaacattaaatatgatgagacgataatgcactttc # agcaagactggggaccagtgtcagccatttcattcagaacagatggtcaccctatcatggctacaggaagtacagcgggacacatcgctctttggaat # ttggaggagaaaaagctccagagtcagatcagacacgcccatcagagcacagtgtcgggaatgaattgtctcccttcagaaccactaatggtcacatc # agctgcagacaattcactcaaagtatggatctttgatttacctgatggaggaggtcggttactacgacaacgatcaggtcacagtgcaccaccgaaca # ccattcatcactatgacaacaatggcaaaaatatcttaagtgcaggccaggacagcgtacttcgctcgttttccaccattcacgactctgagagcaaa # agtttgggaagggccagctacaacaagtcagagacgaagaaggcgggacttctccgtgacagacatatgatgcctaccaatgcaccagtgttcgctgc # ggtggaaattgttgagctcacagtgtatatcgcccgggccagtgactgggataacatcgtggcttgtcacaggggactggctcaagtaaccacgtgga # attatcagaggggcaccatgggaaaattccgtctgtgtcacccgcgatttcaggagaaacaataccaatcagccacagcccagtgtgttgatatcagc # agctgtggcaacttttgtgtgattggctacagctctggtcatgtggacaagtacaacctacagtctgggattcacaggggcgccattggggaccgagc # tcacgaatgctgtgtggtaggggtggcagtggacggtatgaaccaggtcctcgtaacggcagggctgaacggagaaatccgcttctggggtttcaaaa # agcaccagaaaatcgacagcatgcacactgagaactacatctcgaaaatcttactacacagagagagttccatgatggctgtagcaatggaaaatttc # cagatcattgtggtggatctcgacactcggcgggtggtgagaaagtttcaaggtcacagtaacaagttgaccgggctgtccttcagtcctgatgctcg # ctggctcatctcgtccgccatggattgtacagtcaggacctgggacttgccctcgggaaggttgattgactgtttcgccgtggagatggctgtgacct # cactctcgatgtcgcccactgcggactttctggtgaccagccacgtggacagtgtgggggtgtacacctggtacaataacaccctcctctcccacgtc # tcactggcccccctctccgacgactaccagccacaggaagtggaactcccagacactcgctccacgggagcagacgacagtcaggaagacaacaacgc # tacagatccagaggcatcggaggattacgcgtctccggaacaattatcgtctgagctggtgaccctgtcgcttctcccgaactctcgctggcagaacc # tccttaacctggacattatcaagatgagaaataaacccaaggagcctccaaaagttcccaaagcagcaccattctttttacccacaattcctggctta # cagcccaagttttctgcccctggtgacacagagcagacagacaagaagtcagacgttgatctttctcggtttaattcacttggtgaactcggacgcag # gttggaggaaggaaaaaaggagcaaagtgcccttggatatctgaaagaactaggaccctctgcggtggataatgagattcggtgtttggggccggaag # cggggggatcagtgaccactatgtgtcttttcctccacatggtcagtgatacactggacacaaagaaggactttgaagtgggcaacgcctacctggga # cttttccttaagattcacggagaaacagtcaccagtcacccagagctgctggaggcgttgagagaagtgaaaggaaagctaaaccacacctggaactc # cgtacaggatttgttcaccctgaatttaactcttttaacacacttaaggacagccaaaatctga] # protein sequence = [MPTGSKIFSGYRALGFVSDHVPLASRYNKRLKDNYVITSVGKAFHTYNCSKLGITNISDRHPDNISCIAVTNRYVFTG # CGKEKMKASDSIVVIVMKGHTNEVHLLLPFGSHLISVDIHSNLKIWDVENGGVYLEMEFSNSTFHITAIMHPSTYLNKVVLGSKQGTLQLWNILKDKM # LYSFDGWSSSVTVLQQSPAVDVIAVGLSDGRTILHNIKYDETIMHFQQDWGPVSAISFRTDGHPIMATGSTAGHIALWNLEEKKLQSQIRHAHQSTVS # GMNCLPSEPLMVTSAADNSLKVWIFDLPDGGGRLLRQRSGHSAPPNTIHHYDNNGKNILSAGQDSVLRSFSTIHDSESKSLGRASYNKSETKKAGLLR # DRHMMPTNAPVFAAVEIVELTVYIARASDWDNIVACHRGLAQVTTWNYQRGTMGKFRLCHPRFQEKQYQSATAQCVDISSCGNFCVIGYSSGHVDKYN # LQSGIHRGAIGDRAHECCVVGVAVDGMNQVLVTAGLNGEIRFWGFKKHQKIDSMHTENYISKILLHRESSMMAVAMENFQIIVVDLDTRRVVRKFQGH # SNKLTGLSFSPDARWLISSAMDCTVRTWDLPSGRLIDCFAVEMAVTSLSMSPTADFLVTSHVDSVGVYTWYNNTLLSHVSLAPLSDDYQPQEVELPDT # RSTGADDSQEDNNATDPEASEDYASPEQLSSELVTLSLLPNSRWQNLLNLDIIKMRNKPKEPPKVPKAAPFFLPTIPGLQPKFSAPGDTEQTDKKSDV # DLSRFNSLGELGRRLEEGKKEQSALGYLKELGPSAVDNEIRCLGPEAGGSVTTMCLFLHMVSDTLDTKKDFEVGNAYLGLFLKIHGETVTSHPELLEA # LREVKGKLNHTWNSVQDLFTLNLTLLTHLRTAKI] # sequence of block unknown_A 4 [SKIFSGYRALGFVSD] 19 # sequence of block unknown_C 30 [LKDNYVITSVGKAFHTYNCS] 50 # sequence of block unknown_E 59 [RHPDNISCIAV] 70 # sequence of block unknown_I 99 [NEVHLLLPFG] 109 # sequence of block unknown_M 141 [FHITAIMHPSTYLNKVVLGSKQG] 164 # sequence of block unknown_N 165 [LQLWNILKDKMLYSFDGW] 183 # sequence of block unknown_O 184 [SSVTVLQQSPAVDVIAVGLSDGRTILHNIKYDETIMHFQ] 223 # sequence of block unknown_P 227 [PVSAISFRTDGHP] 240 # sequence of block unknown_Q 241 [MATGSTAGHIALWNLE] 257 # sequence of block unknown_S 272 [VSGMNCLPSEPLMVTSA] 289 # sequence of block unknown_T 289 [ADNSLKVWIFDL] 301 # sequence of block unknown_U 302 [DGGGRLLRQRSGHSAPPNTIHHYD] 326 # sequence of block unknown_W 336 [QDSVLRSFSTIHDSESKSLGRASYNKSETKKA] 368 # sequence of block unknown_X 382 [VFAAVEIVELTVYIARA] 399 # sequence of block unknown_Y 399 [SDWDNIVACHRGLAQVTTWNYQRGTMGKFRLCHPR] 434 # sequence of block unknown_Z 441 [SATAQCVDISSCGNFCVIGY] 461 # sequence of block unknown_AA 461 [SSGHVDKYNLQSGIHRGAI] 480 # sequence of block unknown_AB 483 [AHECCVVGVAVDGMNQVLVTAGL] 506 # sequence of block unknown_AC 506 [NGEIRFWGFKKHQ] 519 # sequence of block unknown_AE 528 [YISKILLHRESSMMAVAM] 546 # sequence of block unknown_AF 546 [ENFQIIVVDLDTRRVVRKFQGHSN] 570 # sequence of block unknown_AG 570 [KLTGLSFS] 578 # sequence of block unknown_AH 578 [PDARWLI] 585 # sequence of block unknown_AI 586 [SAMDCTVRTWDLPSGRLIDCFAVEMAVTSLSMSPTADFLVTSHVDSVGVYTWYNNTLLSHVSLAPLSDDY] 656 # sequence of block unknown_AL 695 [SSELVTLSLLPNSRWQNLLNLDIIKMRNKPKEPPKVPK] 733 # sequence of block unknown_AO 790 [YLKELGPSAVDNEIRCLGP] 809 # sequence of block unknown_AP 816 [TMCLFLHMVSDTLDTKKDFEVGNAYLGLFLKIHGE] 851 # end gene g2 ### # command line: # /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG093704UY.prfl --predictionStart=8175 --predictionEnd=52785 --species=fly ./tmp/Contig2831420180911_busco_2432604931_.temp