# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), # Using native and syntenically mapped cDNA alignments to improve de novo gene finding # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 # No extrinsic information on sequences given. # Initialising the parameters using config directory /augustus/config/ ... # Using protein profile unknown # --[4..34]--> unknown_A (13) <--[0..1]--> unknown_B (20) <--[0..13]--> unknown_C (65) <--[0..1]--> unknown_D (10) <--[0..7]--> unknown_E (16) <--[0..1]--> unknown_F (30) <--[0..2]--> unknown_G (23) <--[19..40]--> unknown_I (21) <--[0..65]--> unknown_J (14) <--[0..25]--> unknown_K (15) <--[0..1]--> unknown_L (8) <--[0..13]--> unknown_M (15) <--[110..571]--> unknown_P (34) <--[0..24]--> unknown_Q (33) <--[0..2]--> unknown_R (31) <--[4..12]--> unknown_S (34) <--[1..24]--> unknown_T (29) <--[0..1]--> unknown_U (34) <--[1..275]-- # fly version. Using default transition matrix. # Looks like ./tmp/Contig1616820180911_busco_2432604931_.temp is in fasta format. # We have hints for 0 sequences and for 0 of the sequences in the input set. # # ----- prediction on sequence number 1 (length = 57948, name = Contig16168) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 1 on both strands # start gene g1 Contig16168 AUGUSTUS gene 20777 44404 0.01 - . g1 Contig16168 AUGUSTUS transcript 20777 44404 0.01 - . g1.t1 Contig16168 AUGUSTUS tts 20777 20777 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 20777 21066 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS stop_codon 21004 21006 . - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 21067 21249 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 21286 21390 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 21496 21879 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 21954 24658 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 24713 24825 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 24927 26150 0.78 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 26282 27748 0.08 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 27786 28129 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 28230 29136 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 29605 35756 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 35842 35975 0.15 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 36076 36704 0.14 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 36803 36972 0.3 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 37052 38186 0.3 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 38357 38920 0.41 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 39024 40214 0.16 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 40318 40664 0.12 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 40752 42363 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS intron 42516 42647 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 21004 21066 0.01 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 21250 21285 0.01 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 21250 21285 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 21391 21495 0.01 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 21391 21495 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 21880 21953 0.01 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 21880 21953 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 24659 24712 0.01 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 24659 24712 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 24826 24926 0.77 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 24826 24926 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 26151 26281 0.14 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 26151 26281 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 27749 27785 0.02 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 27749 27785 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 28130 28229 0.01 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 28130 28229 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 29137 29604 0.01 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 29137 29604 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 35757 35841 0.13 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 35757 35841 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 35976 36075 0.15 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 35976 36075 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 36705 36802 0.93 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 36705 36802 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 36973 37051 0.31 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 36973 37051 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 38187 38356 0.87 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 38187 38356 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 38921 39023 0.41 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 38921 39023 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 40215 40317 0.17 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 40215 40317 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 40665 40751 0.12 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 40665 40751 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 42364 42515 0.01 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 42364 42515 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS CDS 42648 42658 0.03 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 42648 42803 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS start_codon 42656 42658 . - 0 transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS exon 44314 44404 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS tss 44404 44404 . - . transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 21016 21066 10.1 - 0 target "unknown_U[18..34]"; target_start 681; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 21250 21285 8 - 0 target "unknown_U[6..17]"; target_start 681; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 21391 21405 4.9 - 0 target "unknown_U[1..5]"; target_start 681; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 21406 21492 8.6 - 0 target "unknown_T[1..29]"; target_start 652; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 21880 21953 2.12 - 2 target "unknown_S[10..34]"; target_start 617; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 24659 24686 1.28 - 0 target "unknown_S[1..10]"; target_start 617; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 24836 24926 4.17 - 1 target "unknown_R[1..31]"; target_start 574; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 26151 26152 1 - 0 target "unknown_R[1..1]"; target_start 574; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 26153 26251 7.86 - 0 target "unknown_Q[1..33]"; target_start 541; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 26252 26281 8.89 - 0 target "unknown_P[25..34]"; target_start 507; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 27749 27785 5.79 - 1 target "unknown_P[12..24]"; target_start 507; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 28130 28164 4.39 - 0 target "unknown_P[1..12]"; target_start 507; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 35764 35808 4.95 - 0 target "unknown_M[1..15]"; target_start 312; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 35976 35999 5.22 - 0 target "unknown_L[1..8]"; target_start 293; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 36000 36044 6.16 - 0 target "unknown_K[1..15]"; target_start 278; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 36045 36075 5.6 - 1 target "unknown_J[4..14]"; target_start 264; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 36705 36715 1.52 - 0 target "unknown_J[1..4]"; target_start 264; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 36782 36802 2.47 - 0 target "unknown_I[15..21]"; target_start 221; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 36973 37014 4.74 - 0 target "unknown_I[1..14]"; target_start 221; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 38219 38287 5.57 - 0 target "unknown_G[1..23]"; target_start 175; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 38288 38356 6.46 - 0 target "unknown_F[8..30]"; target_start 145; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 38921 38941 4.29 - 0 target "unknown_F[1..7]"; target_start 145; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 38942 38989 4.98 - 0 target "unknown_E[1..16]"; target_start 129; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 38993 39022 3.33 - 0 target "unknown_D[1..10]"; target_start 118; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 39023 39023 1 - 1 target "unknown_C[65..65]"; target_start 53; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 40215 40317 8.54 - 2 target "unknown_C[31..65]"; target_start 53; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 40665 40751 6.76 - 2 target "unknown_C[2..31]"; target_start 53; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 42364 42367 2.96 - 0 target "unknown_C[1..2]"; target_start 53; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 42368 42427 6.28 - 0 target "unknown_B[1..20]"; target_start 33; transcript_id "g1.t1"; gene_id "g1"; Contig16168 AUGUSTUS protein_match 42428 42466 7.84 - 0 target "unknown_A[1..13]"; target_start 20; transcript_id "g1.t1"; gene_id "g1"; # coding sequence = [atggtgtctcaggaagatgtacaagtgtcgcctgccaaagaaatcaaagcgatcgacagaaaatcagtccacagaatct # gttcagggcaggttgtcctcaccctagcaacggcagtcaaagaactggtagaaaacagcatagatgcaggggcagtcagtgttgaaataaagttgaaa # gactatggactggaatccattgaagttagtgataacgggagtggtgtggaagaaagtaactttgaaggactaaccctaaagcaccatacctcaaagct # tcaggacttcaccgatctaatcaatgtagagacttttggttttcgaggggaagctttaagctccttgtgtgccctcagctcactaactattacaacaa # aacacagtgatgcaagtgttggtacaaaactggaatttgatcacaatggaaagataaagaccaagtcaccccacccccggcagactggaaccacagta # cagctacagaatctgttctccacactgcccgtccgccacaaggaattccagagaaatgtcaaaaaggaattcaataaaatggtccaggtactcaactc # ctactgcatcatcagcactggggtcaggataacctgcacaaaccaacccaagaaaggaactcgatcgacagtggtatccagtaatggaaacaaaacct # taagagagaatatcactgatgtttttggccccaaacagatgcagagtttgtcggagtttgtgaagtatgaccctagtgaagatatattggaagagttc # agtctcaagaataccaaagatatcgctgactgctttagtttggagggctttgtttctaagtgtcagcatggcttaggaaggagtgcaacagacagaca # gtttgtcttcatcaacaaacgaccctgtgattcatcaaagatttcgaaggtgattaatgaagtttaccatctgtacaatcgacaccagtatccctttg # tggctgtcaacatcagcatgaggaaagaaagaagacttgatcaatttgttttcaagacttctcccagaaaaggattgatggacggagtgagggaaatg # gattttccacagcaagagaaatctgattcagaggagcctctaattatactggaagaggacaaaacagcagattctgtagacttaacaaaaggaggaga # aatttcaaagaatcttgcatcagaggatggcttaaaaatggggccagatggagactgtcctaagacagatatcaaaattgtatttcacggtcactctg # accaatcagagataatagaaggtcactctgaccaatcagagataacaaaagcctctgctgcacataatgcagccaccttaggcctaaaatcagaggag # gaaatctcaagctgtaacccattgtgttctaagaaaattaatgacacactctcaacttcccaaaatgaatcaggagaacagaatcttcaatgttcagt # cactggaaaaagaaccagtgacaatgagatgtacaggaaattccgcgctgtgatctctcccaatgagaaccagtctgcagaggaggaactcaacaggg # aaatctcaaaaagcatgtttaaagagatggagatacttggacagttcaaccttggcttcattatagtgaagttggacgatgacttgtttatcgttgac # cagcatgcaactgatgagaagtacaactttgagatgcttcagcagcatacagtgattcaatgtcagaaactgatacaagcccagaacctggaacttac # tgcaagcaatgaaaccattctgaccgacaacctggaggtgttcaagaaaaatggatttgattttatcatagatgaaagtgtacatggtatttattccc # caatgagaggttttgctgaagtttggttactacaatatgtgtgtgttaatatagtatttttaatatttacagacattgaagaactgatttttatgctc # tcggactctccaaacgtgatgtgtcgtccctctcgagttcgtcaaatgtttgcatctagggcctgcagaaaatccatcatgattggcactgcattaaa # gaagtcggaaatgaaaaggctggtgtgccatatgggagaaatagaacaaccttggaactgccctcatgggagacctactatgagacacctcatcaact # tagatatggttccaagatag] # protein sequence = [MVSQEDVQVSPAKEIKAIDRKSVHRICSGQVVLTLATAVKELVENSIDAGAVSVEIKLKDYGLESIEVSDNGSGVEES # NFEGLTLKHHTSKLQDFTDLINVETFGFRGEALSSLCALSSLTITTKHSDASVGTKLEFDHNGKIKTKSPHPRQTGTTVQLQNLFSTLPVRHKEFQRN # VKKEFNKMVQVLNSYCIISTGVRITCTNQPKKGTRSTVVSSNGNKTLRENITDVFGPKQMQSLSEFVKYDPSEDILEEFSLKNTKDIADCFSLEGFVS # KCQHGLGRSATDRQFVFINKRPCDSSKISKVINEVYHLYNRHQYPFVAVNISMRKERRLDQFVFKTSPRKGLMDGVREMDFPQQEKSDSEEPLIILEE # DKTADSVDLTKGGEISKNLASEDGLKMGPDGDCPKTDIKIVFHGHSDQSEIIEGHSDQSEITKASAAHNAATLGLKSEEEISSCNPLCSKKINDTLST # SQNESGEQNLQCSVTGKRTSDNEMYRKFRAVISPNENQSAEEELNREISKSMFKEMEILGQFNLGFIIVKLDDDLFIVDQHATDEKYNFEMLQQHTVI # QCQKLIQAQNLELTASNETILTDNLEVFKKNGFDFIIDESVHGIYSPMRGFAEVWLLQYVCVNIVFLIFTDIEELIFMLSDSPNVMCRPSRVRQMFAS # RACRKSIMIGTALKKSEMKRLVCHMGEIEQPWNCPHGRPTMRHLINLDMVPR] # sequence of block unknown_U 681 [SEMKRLVCHMGEIEQPWNCPHGRPTMRHLINLDM] 715 # sequence of block unknown_T 652 [VMCRPSRVRQMFASRACRKSIMIGTALKK] 681 # sequence of block unknown_S 617 [GFAEVWLLQYVCVNIVFLIFTDIEELIFMLSDSP] 651 # sequence of block unknown_R 574 [QAQNLELTASNETILTDNLEVFKKNGFDFII] 605 # sequence of block unknown_Q 541 [DDDLFIVDQHATDEKYNFEMLQQHTVIQCQKLI] 574 # sequence of block unknown_P 507 [QSAEEELNREISKSMFKEMEILGQFNLGFIIVKL] 541 # sequence of block unknown_M 312 [YNRHQYPFVAVNISM] 327 # sequence of block unknown_L 293 [KRPCDSSK] 301 # sequence of block unknown_K 278 [GLGRSATDRQFVFIN] 293 # sequence of block unknown_J 264 [DCFSLEGFVSKCQH] 278 # sequence of block unknown_I 221 [TLRENITDVFGPKQMQSLSEF] 242 # sequence of block unknown_G 175 [NVKKEFNKMVQVLNSYCIISTGV] 198 # sequence of block unknown_F 145 [KSPHPRQTGTTVQLQNLFSTLPVRHKEFQR] 175 # sequence of block unknown_E 129 [SVGTKLEFDHNGKIKT] 145 # sequence of block unknown_D 118 [SLTITTKHSD] 128 # sequence of block unknown_C 53 [VEIKLKDYGLESIEVSDNGSGVEESNFEGLTLKHHTSKLQDFTDLINVETFGFRGEALSSLCALS] 118 # sequence of block unknown_B 33 [TLATAVKELVENSIDAGAVS] 53 # sequence of block unknown_A 20 [KSVHRICSGQVVL] 33 # end gene g1 ### # start gene g2 Contig16168 AUGUSTUS gene 47435 56563 0.01 + . g2 Contig16168 AUGUSTUS transcript 47435 56563 0.01 + . g2.t1 Contig16168 AUGUSTUS tss 47435 47435 . + . transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS exon 47435 47545 . + . transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS exon 47798 48395 . + . transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS exon 53131 55200 . + . transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS start_codon 53197 53199 . + 0 transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS intron 55201 55704 0.37 + . transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS intron 56032 56288 0.46 + . transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS CDS 53197 55200 0.29 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS CDS 55705 56031 0.56 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS exon 55705 56031 . + . transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS CDS 56289 56366 0.5 + 0 transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS exon 56289 56563 . + . transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS stop_codon 56364 56366 . + 0 transcript_id "g2.t1"; gene_id "g2"; Contig16168 AUGUSTUS tts 56563 56563 . + . transcript_id "g2.t1"; gene_id "g2"; # coding sequence = [atgaagtacaaacaacgcttaattttcatgtctgttgcgtccttgacgctagtgattgtggcgctgtacaaactttccc # aaaaggaaaccgtgactgaaatgataagtaatctccccaagttagcatttccggttattggtgacactctgttaatttcaagcacctgtggagataaa # cctgtgacgtcagattggatggtagatgagatgttagatgaaatgaacttcacaacgaattctagaaaaagtggtggattgtacgttcttcacgaaaa # aagcgcaaacttcaaaagtaatcctaaaagaaacaatgctcccctgcaggtaatcgtggtaccccactcccacaatgatcccggctggttgtggacgc # tggaaacgtactacactgtcagaacaagaagcatcctcaccaacactgttctgtttctagagaaatttccagatttcagaatgatttggacagaaact # atttttctagatatttggtggaaagagagcacccctgatatgcaaaacaagtttaagaacctcgtcaaacagggtaggatcgaaatattatctggagg # ttgggtgtcggtagacgaagctacgacacatctctcggcagttatagatcaactggtagaagggcatttgtggatcaaagaaatccttggggtcattc # ccaatatcagctggtcgatcgacccatttggttactctactagtttaccatatctgtggcataaatctggtatgacggacatgacgatattgcgggtt # catggggcattaaaacagtacatgggccaccgtcacatgatgacctttaactggcgtcaaccatgggacgtgatgggaaaaagcgatatattatgtca # cgtggaaccttacacattgtacaatatcgagtatagttgtggacctgaccaagaggtatgtgctgttatggacttcggtcgccgagccccatttccta # gtgaaaaggatgcacccattgcaattggtaatggtgagagacaagccaaaaatcttcatgaatatgccacaatggtcgcaaaccagtaccgacaaaaa # gcagatcattacaaacatgatgtacttctcatgcctcatggagacgacttcaggtacatcatggatcatgaattccaatcgaactacgataatatgaa # gaaattaatggaccacataaattctagaccagaattaaacattcggatgcggtttggaactgtgggtgattatttcaacgagctgcacaagagtatta # cgaagtctggcaaaccagacacatctttgagtggtgactttttcacatacactgaccgggatgatgaatattggagtggctattacacatcccggcca # tttgacaaacggatgataagatatctgctggaggttttgaaaacagcggagatgttgaccactttcgctgtgtatcgagcaaaacaacaaggctatga # ctacaaacaagttgagaaggttctgaaagatttgcaagaagccagacgcactcatggcctagttcagcaccacgatgccatcacagggacgtctgctc # atccaacagtcgtggactttgaaaatcgtataacaggggccattactttactgcagggtgttatttcaagagacatcgaaagtattttgttaaaagag # tcagcgacaacaaatgtgaatattgtacctattcacgttcaatcaaaacctgaggcacctctagagcgacgagtcatcagcgtatccgattctggaac # ctacgttatttttaccaactcgtacacacagcggcgcaaagattacgttagccttatagtcaactccgttatgattcaggttctggaccagtatggaa # aggaggtacaagtgcagattaatccttgctgggatagccaaaaagatatagccaagaagatattcgaggttgtcttccccgttgaggtaccagcgatg # tcgtttgcaatattcgtattcaaacgatccgaaaacagtaaatcccaatattcgagtgttaagctgattagcagacaaactcgagataactacccaat # ggctgccaacatatttccgataacttctatggcagtcatgcaggattccaaaacgaggctaacggtacacgttgctcaacctttgggaattggaagct # ttaagcctggatcttttgaaatcttaattgatcgtgttccaacctcatcgggcaaaggcctggaggaaccggttgttgacaataagcctactgttagc # aagtttattcttcacatagaggatttcagtaaagaggagttaatgactaaagatcatcgaaaaaggatggttcatccttcaatggaaagcttcctcgg # agctttcaatcaaagaaatacaaagaatgtctttgacatatttacacgaaaaagagaaactctcacaaacttctga] # protein sequence = [MKYKQRLIFMSVASLTLVIVALYKLSQKETVTEMISNLPKLAFPVIGDTLLISSTCGDKPVTSDWMVDEMLDEMNFTT # NSRKSGGLYVLHEKSANFKSNPKRNNAPLQVIVVPHSHNDPGWLWTLETYYTVRTRSILTNTVLFLEKFPDFRMIWTETIFLDIWWKESTPDMQNKFK # NLVKQGRIEILSGGWVSVDEATTHLSAVIDQLVEGHLWIKEILGVIPNISWSIDPFGYSTSLPYLWHKSGMTDMTILRVHGALKQYMGHRHMMTFNWR # QPWDVMGKSDILCHVEPYTLYNIEYSCGPDQEVCAVMDFGRRAPFPSEKDAPIAIGNGERQAKNLHEYATMVANQYRQKADHYKHDVLLMPHGDDFRY # IMDHEFQSNYDNMKKLMDHINSRPELNIRMRFGTVGDYFNELHKSITKSGKPDTSLSGDFFTYTDRDDEYWSGYYTSRPFDKRMIRYLLEVLKTAEML # TTFAVYRAKQQGYDYKQVEKVLKDLQEARRTHGLVQHHDAITGTSAHPTVVDFENRITGAITLLQGVISRDIESILLKESATTNVNIVPIHVQSKPEA # PLERRVISVSDSGTYVIFTNSYTQRRKDYVSLIVNSVMIQVLDQYGKEVQVQINPCWDSQKDIAKKIFEVVFPVEVPAMSFAIFVFKRSENSKSQYSS # VKLISRQTRDNYPMAANIFPITSMAVMQDSKTRLTVHVAQPLGIGSFKPGSFEILIDRVPTSSGKGLEEPVVDNKPTVSKFILHIEDFSKEELMTKDH # RKRMVHPSMESFLGAFNQRNTKNVFDIFTRKRETLTNF] # end gene g2 ### # command line: # /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG093704Q0.prfl --predictionStart=1250 --predictionEnd=62484 --species=fly ./tmp/Contig1616820180911_busco_2432604931_.temp