# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), # Using native and syntenically mapped cDNA alignments to improve de novo gene finding # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 # No extrinsic information on sequences given. # Initialising the parameters using config directory /augustus/config/ ... # Using protein profile unknown # --[0..151]--> unknown_A (15) <--[16..28]--> unknown_C (36) <--[2..38]--> unknown_D (34) <--[0..2]--> unknown_E (22) <--[4..22]--> unknown_F (23) <--[5..7]--> unknown_G (19) <--[32..58]--> unknown_L (7) <--[9..32]--> unknown_M (14) <--[17..45]--> unknown_O (40) <--[0..27]--> unknown_P (39) <--[0..2]--> unknown_Q (18) <--[1..3]--> unknown_R (32) <--[0..2]--> unknown_S (34) <--[8..16]--> unknown_U (12) <--[2..14]--> unknown_V (27) <--[4..24]--> unknown_W (36) <--[3..13]--> unknown_X (49) <--[1..12]--> unknown_Y (33) <--[1..69]--> unknown_Z (14) <--[11..76]--> unknown_AB (35) <--[3..50]-- # fly version. Using default transition matrix. # Looks like ./tmp/Contig88420180911_busco_2432604931_.temp is in fasta format. # We have hints for 0 sequences and for 0 of the sequences in the input set. # # ----- prediction on sequence number 1 (length = 20462, name = Contig884) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 1 on both strands # start gene g1 Contig884 AUGUSTUS gene 654 20405 0.01 - . g1 Contig884 AUGUSTUS transcript 654 20405 0.01 - . g1.t1 Contig884 AUGUSTUS tts 654 654 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 654 957 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 2175 2264 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS stop_codon 2184 2186 . - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 2265 6036 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 6151 6928 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 7055 7136 0.13 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 7253 7608 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 7629 8492 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 8597 10076 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 10171 10440 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 10541 10829 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 11054 11678 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 11817 12358 0.34 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 12424 12742 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 12854 13238 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 13303 13439 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 13538 14105 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 14322 14716 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 14787 15769 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 15844 16478 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 16527 17212 0.36 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 17321 17462 0.76 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 17535 18693 0.42 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 18779 18882 0.04 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 18984 19145 0.04 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS intron 19238 20286 0.01 - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 2184 2264 0.01 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 6037 6150 0.01 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 6037 6150 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 6929 7054 0.03 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 6929 7054 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 7137 7252 0.13 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 7137 7252 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 7609 7628 0.01 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 7609 7628 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 8493 8596 0.31 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 8493 8596 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 10077 10170 0.11 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 10077 10170 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 10441 10540 0.01 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 10441 10540 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 10830 11053 0.01 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 10830 11053 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 11679 11816 0.19 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 11679 11816 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 12359 12423 0.14 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 12359 12423 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 12743 12853 0.01 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 12743 12853 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 13239 13302 0.01 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 13239 13302 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 13440 13537 0.01 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 13440 13537 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 14106 14321 0.09 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 14106 14321 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 14717 14786 0.01 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 14717 14786 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 15770 15843 0.02 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 15770 15843 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 16479 16526 0.3 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 16479 16526 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 17213 17320 0.72 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 17213 17320 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 17463 17534 0.47 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 17463 17534 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 18694 18778 0.03 - 1 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 18694 18778 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 18883 18983 0.04 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 18883 18983 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 19146 19237 0.06 - 2 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 19146 19237 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS CDS 20287 20326 0.01 - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS exon 20287 20405 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS start_codon 20324 20326 . - 0 transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS tss 20405 20405 . - . transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 2214 2264 1.08 - 0 target "unknown_AB[19..35]"; target_start 742; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 6037 6090 4.03 - 0 target "unknown_AB[1..18]"; target_start 742; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 6941 6982 3.27 - 0 target "unknown_Z[1..14]"; target_start 704; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 7164 7252 3.26 - 2 target "unknown_Y[4..33]"; target_start 638; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 7609 7618 2.01 - 0 target "unknown_Y[1..4]"; target_start 638; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 8510 8596 5.48 - 0 target "unknown_X[21..49]"; target_start 580; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 10077 10136 3.86 - 0 target "unknown_X[1..20]"; target_start 580; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 10146 10170 2.54 - 1 target "unknown_W[28..36]"; target_start 541; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 10441 10523 4.74 - 0 target "unknown_W[1..28]"; target_start 541; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 10849 10929 2.94 - 0 target "unknown_V[1..27]"; target_start 502; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 10954 10989 2.66 - 0 target "unknown_U[1..12]"; target_start 482; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 11014 11053 5.16 - 1 target "unknown_S[21..34]"; target_start 440; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 11679 11740 3.46 - 0 target "unknown_S[1..21]"; target_start 440; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 11744 11816 8.9 - 1 target "unknown_R[8..32]"; target_start 407; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 12359 12381 3.95 - 0 target "unknown_R[1..8]"; target_start 407; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 12385 12423 5.5 - 0 target "unknown_Q[6..18]"; target_start 388; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 12743 12757 5.06 - 0 target "unknown_Q[1..5]"; target_start 388; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 12764 12853 6.01 - 0 target "unknown_P[10..39]"; target_start 347; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 13239 13265 6.47 - 0 target "unknown_P[1..9]"; target_start 347; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 13272 13302 3.33 - 1 target "unknown_O[30..40]"; target_start 305; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 13440 13528 3.45 - 0 target "unknown_O[1..30]"; target_start 305; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 14169 14210 4.61 - 0 target "unknown_M[1..14]"; target_start 267; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 14241 14261 3.9 - 0 target "unknown_L[1..7]"; target_start 250; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 14765 14786 4.08 - 1 target "unknown_G[12..19]"; target_start 195; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 15770 15804 2.92 - 0 target "unknown_G[1..12]"; target_start 195; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 15823 15843 2.48 - 0 target "unknown_F[17..23]"; target_start 166; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 16479 16526 5.35 - 0 target "unknown_F[1..16]"; target_start 166; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 17228 17293 3.57 - 0 target "unknown_E[1..22]"; target_start 139; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 17300 17320 3.56 - 0 target "unknown_D[28..34]"; target_start 103; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 17463 17534 3.46 - 0 target "unknown_D[4..27]"; target_start 103; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 18694 18702 5.31 - 0 target "unknown_D[1..3]"; target_start 103; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 18709 18778 4.03 - 1 target "unknown_C[13..36]"; target_start 65; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 18883 18920 2.94 - 0 target "unknown_C[1..13]"; target_start 65; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 18981 18983 4.03 - 0 target "unknown_A[15..15]"; target_start 30; transcript_id "g1.t1"; gene_id "g1"; Contig884 AUGUSTUS protein_match 19146 19187 3.74 - 0 target "unknown_A[1..14]"; target_start 30; transcript_id "g1.t1"; gene_id "g1"; # coding sequence = [atgtcacgtcgtcgaagagattcaagtgacgaagaagatgtgggacattctgcaagaaaacgcagacgaggatcagaaa # atattgacatagaggagagactggagtccctgatcaccagagtgggcgaaaagagtacctcgtcgttggagagtaacttggaggggctggctagtgta # ctggaggcagaccttgggaattacaaaaccaagataatgaggattctgtgttcctgtgtagtaaaactaccagagaagatggctgtgtacagcactct # gattggactcctgaatgccaagaattacaactgcggaggagagtttgttgaaatgcttgtcagaaatctgaaagaggcactaaagacaggggaatacg # acaatgccaagttgatcgttaggtttatagcagactgcgttaactgccacgtgattgtcgcgggttccttgctgtcgatgtttgacaatttcgtagag # gtgacgctggaagacaacatccctcaggtgcgctctgactggtatgtgtatgcggtcctgtgtgccctgccatgggtggcaaaagagttacatgaaaa # gaaagaagcggagtttaacaaactcttatccactattgataattacatcagtaaaagacagaaaattcatgtcccagccttgagagtgtggacctctg # attttccccacccccaggaggagtatctagactgcctttgggcgcagattaagaatttgaaggccaacaaatggtcagaaaagcagatcacgaggcca # tacctggccttcgatagcgtgttatgtgaggcactccaacacaccctcccccaaataatcccaccctcacacaacgaggaaaacacctatcctcttcc # caaagtggtcttcaggatattcgattatacagatgtacctgagggccccgtgttgccagggagccactccatagagagatatctgatagaggaacaga # tcgacaggattctttgtacaaacttcgtggagcgcaaagactgtgctgcagcgttattaagttttccatccaaaaacaagatcccactgaattacatg # atagtagaggtgatgttttctcagctgtttctgctcccaagacccccctacctggagattttctacggatcattattgatagaactctgtaaactaca # gccgggctccatgccacaagttttagcacaagccactgagatgttgtatgagagaattgacaccatgaatgttgcctgcattgaaaggttctccaact # ggtttgcctaccacttgagcaatttccagttcaggtggagctgggatgactggtcaacctgttgtcagatggacccagaattacccaaacccaaattt # gtcaaggaggtgcttctaaaagctttgaggttgtcctaccaccagcgaatggtagaaactgtccctgacagttttgaagcccttctcccacaaaaacc # tcactctgagttcaaatacgagaaggagggggcagggtcaatgccaggcaccatggtagcccaccaactgatctcctccatcaagtctaagtgtaccc # cggaggaagccatggtgttactcaaagatctccccaacccactcagtgaggaggaaagtgacccgacctaccatccactcagaattgatgtctttgtc # tctgttttacttcaccttggcaacaagtcattcagccattcatttgcagccatagcgaaatttcatcacattttaaagcttctagctgacacagaaga # gggacaaatctggttacttcgtacaatgtttgaagtctggagttcacatcagcagatgatggtggtcctggtagacaagttgctgaagactcagatcg # tagaaccttccgctgtcgccaactggttattctccagcgaaatgcagccagaatttaccaattcttgtctattccacggcaatctctacgtgtgggag # atcatgcatgcaacaattaaaaagatgagtaaacaagtcgacaaactacagcaggacgtggaagatgcaaaggataaactcgatgcagccaaaagaaa # gcaagcagatggattgatggatgatgatgaagatgaagttccaacagatgaaatcattgagaggatggacgagaggcttgaggctgctcagaaccaac # aaaaacgacttttccttatcattttccagaggttcatcatgattctgacagaccatttggcaaagtgtgaagggaatggcatcgactacaatacacct # tggtacaaatgggttattgaacgattgcagcagatatttttactgtcttccgagtgtatttacgattacacaatggcaataaaaatactactgatgat # atattcctgttattttacaaatccctag] # protein sequence = [MSRRRRDSSDEEDVGHSARKRRRGSENIDIEERLESLITRVGEKSTSSLESNLEGLASVLEADLGNYKTKIMRILCSC # VVKLPEKMAVYSTLIGLLNAKNYNCGGEFVEMLVRNLKEALKTGEYDNAKLIVRFIADCVNCHVIVAGSLLSMFDNFVEVTLEDNIPQVRSDWYVYAV # LCALPWVAKELHEKKEAEFNKLLSTIDNYISKRQKIHVPALRVWTSDFPHPQEEYLDCLWAQIKNLKANKWSEKQITRPYLAFDSVLCEALQHTLPQI # IPPSHNEENTYPLPKVVFRIFDYTDVPEGPVLPGSHSIERYLIEEQIDRILCTNFVERKDCAAALLSFPSKNKIPLNYMIVEVMFSQLFLLPRPPYLE # IFYGSLLIELCKLQPGSMPQVLAQATEMLYERIDTMNVACIERFSNWFAYHLSNFQFRWSWDDWSTCCQMDPELPKPKFVKEVLLKALRLSYHQRMVE # TVPDSFEALLPQKPHSEFKYEKEGAGSMPGTMVAHQLISSIKSKCTPEEAMVLLKDLPNPLSEEESDPTYHPLRIDVFVSVLLHLGNKSFSHSFAAIA # KFHHILKLLADTEEGQIWLLRTMFEVWSSHQQMMVVLVDKLLKTQIVEPSAVANWLFSSEMQPEFTNSCLFHGNLYVWEIMHATIKKMSKQVDKLQQD # VEDAKDKLDAAKRKQADGLMDDDEDEVPTDEIIERMDERLEAAQNQQKRLFLIIFQRFIMILTDHLAKCEGNGIDYNTPWYKWVIERLQQIFLLSSEC # IYDYTMAIKILLMIYSCYFTNP] # sequence of block unknown_AB 742 [NTPWYKWVIERLQQIFLLSSECIYDYTMAIKILLM] 777 # sequence of block unknown_Z 704 [RLEAAQNQQKRLFL] 718 # sequence of block unknown_Y 638 [FHGNLYVWEIMHATIKKMSKQVDKLQQDVEDAK] 671 # sequence of block unknown_X 580 [EEGQIWLLRTMFEVWSSHQQMMVVLVDKLLKTQIVEPSAVANWLFSSEM] 629 # sequence of block unknown_W 541 [PLRIDVFVSVLLHLGNKSFSHSFAAIAKFHHILKLL] 577 # sequence of block unknown_V 502 [VAHQLISSIKSKCTPEEAMVLLKDLPN] 529 # sequence of block unknown_U 482 [KPHSEFKYEKEG] 494 # sequence of block unknown_S 440 [QMDPELPKPKFVKEVLLKALRLSYHQRMVETVPD] 474 # sequence of block unknown_R 407 [MNVACIERFSNWFAYHLSNFQFRWSWDDWSTC] 439 # sequence of block unknown_Q 388 [SMPQVLAQATEMLYERID] 406 # sequence of block unknown_P 347 [IPLNYMIVEVMFSQLFLLPRPPYLEIFYGSLLIELCKLQ] 386 # sequence of block unknown_O 305 [LPGSHSIERYLIEEQIDRILCTNFVERKDCAAALLSFPSK] 345 # sequence of block unknown_M 267 [QHTLPQIIPPSHNE] 281 # sequence of block unknown_L 250 [QITRPYL] 257 # sequence of block unknown_G 195 [NKLLSTIDNYISKRQKIHV] 214 # sequence of block unknown_F 166 [VRSDWYVYAVLCALPWVAKELHE] 189 # sequence of block unknown_E 139 [CHVIVAGSLLSMFDNFVEVTLE] 161 # sequence of block unknown_D 103 [GGEFVEMLVRNLKEALKTGEYDNAKLIVRFIADC] 137 # sequence of block unknown_C 65 [NYKTKIMRILCSCVVKLPEKMAVYSTLIGLLNAKNY] 101 # sequence of block unknown_A 30 [EERLESLITRVGEKS] 45 # end gene g1 ### # command line: # /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG093702MJ.prfl --predictionStart=0 --predictionEnd=34324 --species=fly ./tmp/Contig88420180911_busco_2432604931_.temp