# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /augustus/config/ ...
# Using protein profile unknown
# --[33..161]--> unknown_A (24) <--[0..2]--> unknown_B (12) <--[0..4]--> unknown_C (65) <--[1..5]--> unknown_D (51) <--[0..17]--> unknown_E (15) <--[0..2]--> unknown_F (67) <--[0..12]--> unknown_G (15) <--[0..21]--> unknown_H (18) <--[0..2]--> unknown_I (10) <--[7..12]--> unknown_K (17) <--[0..6]--> unknown_L (12) <--[0..1]--> unknown_M (15) <--[11..18]--> unknown_O (51) <--[2..8]--> unknown_P (56) <--[0..3]--> unknown_Q (31) <--[0..6]--> unknown_R (23) <--[0..3]--> unknown_S (25) <--[0..6]--> unknown_T (74) <--[0..1]--> unknown_U (82) <--[0..2]--> unknown_V (98) <--[50..460]--
# BUSCO_20180911_busco_2432604931 version. Using default transition matrix.
# admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0)
# Looks like ./tmp/Contig2209020180911_busco_2432604931_.temp is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 60995, name = Contig22090) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
# start gene g1
Contig22090	AUGUSTUS	gene	34479	34748	0.5	-	.	g1
Contig22090	AUGUSTUS	transcript	34479	34748	0.5	-	.	g1.t1
Contig22090	AUGUSTUS	stop_codon	34479	34481	.	-	0	transcript_id "g1.t1"; gene_id "g1";
Contig22090	AUGUSTUS	CDS	34479	34748	0.5	-	0	transcript_id "g1.t1"; gene_id "g1";
Contig22090	AUGUSTUS	start_codon	34746	34748	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# coding sequence = [atgaggaactgcctgccgtactgcaataagtctacccaccctgagtcaccaagcagcagcacctcacagtgtctgtctg
# gtgctcaacacttgttcacagcaagtgctcgaaccactaacagcccaaacaggtgtggcgccgattccagtctgaagcagttcacacaggctcagaca
# ggcgtggactcaaacaaggggggacctagcagtaataggccagcaggagaaccatctgaccagacactgccggatagattgtgtttacagtga]
# protein sequence = [MRNCLPYCNKSTHPESPSSSTSQCLSGAQHLFTASARTTNSPNRCGADSSLKQFTQAQTGVDSNKGGPSSNRPAGEPS
# DQTLPDRLCLQ]
# end gene g1
###
# start gene g2
Contig22090	AUGUSTUS	gene	34860	58259	0.01	-	.	g2
Contig22090	AUGUSTUS	transcript	34860	58259	0.01	-	.	g2.t1
Contig22090	AUGUSTUS	stop_codon	34860	34862	.	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	34980	35267	0.35	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	35288	37260	0.52	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	37378	38175	0.36	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	38223	38331	0.43	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	38490	38856	0.39	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	38916	39189	0.59	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	39309	39981	0.81	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	40110	41275	0.48	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	41360	42499	0.46	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	42539	44534	0.39	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	44663	44778	0.85	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	44885	47123	0.7	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	47237	48307	0.15	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	48395	48750	0.26	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	48824	49100	0.88	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	49233	49456	0.85	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	49606	50548	0.48	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	50658	52459	0.26	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	52566	57098	0.13	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	intron	57242	58082	0.2	-	.	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	34860	34979	0.57	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	35268	35287	0.59	-	2	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	37261	37377	0.41	-	2	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	38176	38222	0.35	-	1	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	38332	38489	0.35	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	38857	38915	0.42	-	2	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	39190	39308	0.56	-	1	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	39982	40109	0.75	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	41276	41359	0.64	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	42500	42538	0.58	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	44535	44662	0.51	-	2	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	44779	44884	0.85	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	47124	47236	0.46	-	2	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	48308	48394	0.38	-	2	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	48751	48823	1	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	49101	49232	0.86	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	49457	49605	0.69	-	2	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	50549	50657	0.3	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	52460	52565	0.39	-	1	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	57099	57241	0.56	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	CDS	58083	58259	0.16	-	0	transcript_id "g2.t1"; gene_id "g2";
Contig22090	AUGUSTUS	start_codon	58257	58259	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# coding sequence = [atgtttcaacgcttttgtgccgacgagcactggtcttctgtcgttgatgatcatttcacgctttctgtaaagagagaga
# acatggtcctctacggtatggtgcatcatttccacctttcttcctgtaagcggaagagactggtcttctgtcggtatggtgatcgtttcacgcttttt
# gagattgaggttgctagtgtggatgctttccaaggaagagagaaggacttcattattttgtcctgtgtccgatccaacgaacatcaaggaataggctt
# tctgaatgacccaagacgtcttaatgtggctttaactcgggcaagacgaatgggtctgatacctaacaccaccaaaacgttcaaacaagacgatgaga
# caaccagcgcgggctgccttcttacacatcaccacagggcccagcctgcaatgacaaatgatcaaatcgttattatgacgtcagttgacgctaagtca
# cagttctacttgtcacagacaaatgatcgaagcgccattatgacgccagttgatgttatattccttccagggcgacccaaccaaacaaagacaacatt
# aaatccactgttcagttccagtgacccctacacaaacaaagacaacattaatccactgttcagttcaggtgaccctaacacaaacaaaacaacattaa
# tccactgcagtttccagcaacccctgtggaaccacctgttaacttactacaaggaacagaagtgcttggtggagggcccactgaacaatctgaaagaa
# agcatgattcagttcagtaaacctcgcaagctggtcaacacatccaacccgggaggacgatttatgagcaacatcatgtttgatgccagggaggtgat
# gattccagggagtgtgtacgatagaagtaacagaaatgctccagctaacaggggaactgggcgtcgccggggtcagaagcctccacgatacagcaaca
# cacagtcccagcagagatgtatcccagccgttctccagggtccgctgacacaggcccatgtcgatgagtcagccttccagatgaagccagccgggact
# gtcggtctctcccagccagaactctctcaggacagtttcttggcggatgacttcaaatctcaagcagatggcatgctgtcccaagactccacctacca
# gggcgaccgcatgttctatgcatcacagttgtcacagggaaatgaggaactgcctgcgtactgcaataagtctacccaccatgagtcaccaagcagca
# gcactcacagtgtctgtctggtgctcaacacttgttcacagcaagtgctcgaaactaacgccaaacagactggtcttctgtcggttgatgatcatttc
# acgctttctgctagtcaggtgagaacagtcaggcagacaaagtcaggtgaagaacatgtcagggctaggcacagtcagagccaggctagtcagtcagg
# caacagtcagagtcaagctagtcaggtgaacgaacagtcaggtcaggctagtcaggtagaacagtcaggcagacaaagtcaggtagaacagtcagggc
# taggccagtcagagccagcagtcagtgtgatttcatctaacataggannnnnnnnnnnnnnnnnnnnnnnnnccgctgaacatctgaaagagcatgat
# ggtcagttcagtaaacctcgcaagctgtggtcaacacatccacccggaggacgatttatgagcaacatcatgtttgatcgccagggaggtgatgttcc
# agggagtgtaacagaaatgctccagctaacaggaactgggcgcgccggggtcagacctccacgatacagcaacacacagcccagcagagtaactccca
# gatacagtcaggcaacagtcagagtcaaggctagtcaggttgagaacagtcaggtcaggctagtcagtcaggtgagaacagtcagagccaggcacagt
# cagaacaggctagtcagatgtatcccagccgttctcccagggtccgctgacacagggccccatgtcgatgagtcagcccttccagatgagccagccgg
# gactgtccggtctctcccagccagaactctctcagaggataatgcaatgtctaaagacagtttcttggcggatgacttcaaatctcaagcagatggca
# tgctgtcccaagactccacctaccagggcgaccgcatgttctatgcatcacagttgtcacagggtccatttaattag]
# protein sequence = [MFQRFCADEHWSSVVDDHFTLSVKRENMVLYGMVHHFHLSSCKRKRLVFCRYGDRFTLFEIEVASVDAFQGREKDFII
# LSCVRSNEHQGIGFLNDPRRLNVALTRARRMGLIPNTTKTFKQDDETTSAGCLLTHHHRAQPAMTNDQIVIMTSVDAKSQFYLSQTNDRSAIMTPVDV
# IFLPGRPNQTKTTLNPLFSSSDPYTNKDNINPLFSSGDPNTNKTTLIHCSFQQPLWNHLLTYYKEQKCLVEGPLNNLKESMIQFSKPRKLVNTSNPGG
# RFMSNIMFDAREVMIPGSVYDRSNRNAPANRGTGRRRGQKPPRYSNTQSQQRCIPAVLQGPLTQAHVDESAFQMKPAGTVGLSQPELSQDSFLADDFK
# SQADGMLSQDSTYQGDRMFYASQLSQGNEELPAYCNKSTHHESPSSSTHSVCLVLNTCSQQVLETNAKQTGLLSVDDHFTLSASQVRTVRQTKSGEEH
# VRARHSQSQASQSGNSQSQASQVNEQSGQASQVEQSGRQSQVEQSGLGQSEPAVSVISSNIGXXXXXXXXXAEHLKEHDGQFSKPRKLWSTHPPGGRF
# MSNIMFDRQGGDVPGSVTEMLQLTGTGRAGVRPPRYSNTQPSRVTPRYSQATVRVKASQVENSQVRLVSQVRTVRARHSQNRLVRCIPAVLPGSADTG
# PHVDESALPDEPAGTVRSLPARTLSEDNAMSKDSFLADDFKSQADGMLSQDSTYQGDRMFYASQLSQGPFN]
# end gene g2
###
# start gene g3
Contig22090	AUGUSTUS	gene	60219	73527	0.01	-	.	g3
Contig22090	AUGUSTUS	transcript	60219	73527	0.01	-	.	g3.t1
Contig22090	AUGUSTUS	stop_codon	60219	60221	.	-	0	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	60371	61825	0.88	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	61846	62678	0.43	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	62703	62862	0.47	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	62970	63491	0.39	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	63508	63767	0.4	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	63834	63965	0.69	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	64094	64450	0.96	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	64520	66489	0.97	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	66647	66900	1	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	67019	67332	1	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	67547	67771	0.91	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	67916	69969	0.68	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	70054	72455	0.06	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	intron	72559	73519	0.08	-	.	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	60219	60370	0.82	-	2	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	61826	61845	0.88	-	1	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	62679	62702	0.46	-	1	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	62863	62969	0.96	-	0	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	63492	63507	0.4	-	1	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	63768	63833	0.54	-	1	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	63966	64093	0.96	-	0	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	64451	64519	1	-	0	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	66490	66646	1	-	1	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	66901	67018	1	-	2	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	67333	67546	0.97	-	0	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	67772	67915	0.9	-	0	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	69970	70053	0.42	-	0	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	72456	72558	0.07	-	1	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	CDS	73520	73527	0.1	-	0	transcript_id "g3.t1"; gene_id "g3";
Contig22090	AUGUSTUS	start_codon	73525	73527	.	-	0	transcript_id "g3.t1"; gene_id "g3";
# coding sequence = [atgaactgtctgaggaaagtcaagattgggaatttggccatacgctgggtccacgctatttgtgacattccgattccgt
# tgggacactctactaaattacctgatcctcttaacaatggacaagtactagtgtgtgctccctctaacatcgcagtcgaccaactgaccgaaaagatt
# cacaaaacgggattgaagcatgcggacgtgatctgctgtacctgtgtaggaactggagaccccaggctggccaagatgcagtttagatcagtgctgat
# tgacgagagtacacaagccaccgagccagagtgcatgatccccgtagtgttgggctgtagacagctgattctggtgggtgaccattgccagctgggcc
# ctgtggtgatgtgtaagaaggcagcccgcgctggtttgtctcagtctctgtttgaacgtttggtggtgttaggtatcagacccattcgtctgcaggtc
# cagtacagaatgcaccctgcgcttagtgctttcccatccaacatcttctacgagggctctttacaaaacggagttgctccaggagaccgcactaggaa
# aggccttgacattccttggccgcaaggtgacaagcctatgtttttctacaccacatctggacaagaggaaatttcaagttctggaacttcatatctga
# ataggactgaggctgccaatgttgagaagatcgccaccaggtttttgagatccaatgtgaagccagagcaaatcggtattatcacaccatacgaagga
# cagagggcttacattgtacaatacatgcagtacagcggatctctgaacaagaaattgtatcaggaggcgatttatgagcacatcatgtttgatgccag
# ggaggtgatgattccagggagtgtgacgatagaaaaatgctcccagctaacaggggactgggcgtcgccggggtcagaagcctccacgatacagcaca
# cacagtccaagcagagtaacctcccagtacagtcagggcaacagtcagagtcaaggctagtcagtcagagtcaggctagtcaggtgagaacagtcaga
# gccaggcacaccagtcagaacaggctagtcagtcccttccattggtatgatgtacccgcgtctccgggtccgctgacacaggcccatgtcaatgagtc
# agccttcaatgaagcccagccgggacctgtcggtctctcccagccagaactcttcagaatttggggaaagggcgggtgggggtcaccggacgtaaact
# caggaaatgaggacgcctgcccgtactgcaatagtctacccaccatgatgcaccaagcagcagcacctcacagtgtctgtctggtgctcaccttggtt
# cacagcagtgctcgaccactaaccagcccaaacagtgtggcgccgattccagtctga]
# protein sequence = [MNCLRKVKIGNLAIRWVHAICDIPIPLGHSTKLPDPLNNGQVLVCAPSNIAVDQLTEKIHKTGLKHADVICCTCVGTG
# DPRLAKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG
# SLQNGVAPGDRTRKGLDIPWPQGDKPMFFYTTSGQEEISSSGTSYLNRTEAANVEKIATRFLRSNVKPEQIGIITPYEGQRAYIVQYMQYSGSLNKKL
# YQEAIYEHIMFDAREVMIPGSVTIEKCSQLTGDWASPGSEASTIQHTQSKQSNLPVQSGQQSESRLVSQSQASQVRTVRARHTSQNRLVSPFHWYDVP
# ASPGPLTQAHVNESAFNEAQPGPVGLSQPELFRIWGKGGWGSPDVNSGNEDACPYCNSLPTMMHQAAAPHSVCLVLTLVHSSARPLTSPNSVAPIPV]
# end gene g3
###
# start gene g4
Contig22090	AUGUSTUS	gene	76884	79428	0.18	+	.	g4
Contig22090	AUGUSTUS	transcript	76884	79428	0.18	+	.	g4.t1
Contig22090	AUGUSTUS	start_codon	76884	76886	.	+	0	transcript_id "g4.t1"; gene_id "g4";
Contig22090	AUGUSTUS	intron	76976	77743	0.5	+	.	transcript_id "g4.t1"; gene_id "g4";
Contig22090	AUGUSTUS	intron	77754	79263	0.31	+	.	transcript_id "g4.t1"; gene_id "g4";
Contig22090	AUGUSTUS	CDS	76884	76975	0.55	+	0	transcript_id "g4.t1"; gene_id "g4";
Contig22090	AUGUSTUS	CDS	77744	77753	0.35	+	1	transcript_id "g4.t1"; gene_id "g4";
Contig22090	AUGUSTUS	CDS	79264	79428	0.55	+	0	transcript_id "g4.t1"; gene_id "g4";
Contig22090	AUGUSTUS	stop_codon	79426	79428	.	+	0	transcript_id "g4.t1"; gene_id "g4";
# coding sequence = [atgatttgcaacagggggtgggggactaattttgaggcaggcaggaagaagaacgtttatgatgaaagaatctccaaag
# acatagcttgctcgactgaactgggacccagtcaggtgcaagccgttgatacaggacaggcagtttctgtcgtgctcgttaaggttcgtcggacagga
# gcagtgaggagtagacaatctacgctcagcagatctaacaaagctgaggaactatggaaggacaacccagaggcacgctggaggatctag]
# protein sequence = [MICNRGWGTNFEAGRKKNVYDERISKDIACSTELGPSQVQAVDTGQAVSVVLVKVRRTGAVRSRQSTLSRSNKAEELW
# KDNPEARWRI]
# end gene g4
###
# start gene g5
Contig22090	AUGUSTUS	gene	79984	88662	0.07	+	.	g5
Contig22090	AUGUSTUS	transcript	79984	88662	0.07	+	.	g5.t1
Contig22090	AUGUSTUS	start_codon	79984	79986	.	+	0	transcript_id "g5.t1"; gene_id "g5";
Contig22090	AUGUSTUS	intron	80130	82926	0.45	+	.	transcript_id "g5.t1"; gene_id "g5";
Contig22090	AUGUSTUS	intron	83016	84250	0.36	+	.	transcript_id "g5.t1"; gene_id "g5";
Contig22090	AUGUSTUS	intron	84454	88608	0.25	+	.	transcript_id "g5.t1"; gene_id "g5";
Contig22090	AUGUSTUS	CDS	79984	80129	0.73	+	0	transcript_id "g5.t1"; gene_id "g5";
Contig22090	AUGUSTUS	CDS	82927	83015	0.67	+	1	transcript_id "g5.t1"; gene_id "g5";
Contig22090	AUGUSTUS	CDS	84251	84453	0.34	+	2	transcript_id "g5.t1"; gene_id "g5";
Contig22090	AUGUSTUS	CDS	88609	88662	0.23	+	0	transcript_id "g5.t1"; gene_id "g5";
Contig22090	AUGUSTUS	stop_codon	88660	88662	.	+	0	transcript_id "g5.t1"; gene_id "g5";
# coding sequence = [atgctacaataccacgaacctttgacgctgggtgaaactggagctgactcgacaaagctgaaggacgtcgcaacccgga
# caatattgtcagtgcgctgggagtggggctggaacagaagaaggattgcttatttccatctgcccaagaaaacgtttcgaaagaagacgatagaaaca
# acggaaatgtacgagactgataagaacatccatcaacaaataaaacacgagttctcagtagagtgtcccaacggaatcggaatgtcacaaatagcgtg
# gacccagcgtatggccaaattcccaatcttgactttcctcagactgaagaggatctcattggggccgacactcaaggaaccgattatgactatacgga
# atttcacaccatccagacccaatcacagacccaagcttcccaacttgagcatggacaaagtcaaagtgatggccgcagaggcatccattcaaaatggg
# ctggataaaggggttgcatga]
# protein sequence = [MLQYHEPLTLGETGADSTKLKDVATRTILSVRWEWGWNRRRIAYFHLPKKTFRKKTIETTEMYETDKNIHQQIKHEFS
# VECPNGIGMSQIAWTQRMAKFPILTFLRLKRISLGPTLKEPIMTIRNFTPSRPNHRPKLPNLSMDKVKVMAAEASIQNGLDKGVA]
# end gene g5
###
# start gene g6
Contig22090	AUGUSTUS	gene	89306	89512	0.64	-	.	g6
Contig22090	AUGUSTUS	transcript	89306	89512	0.64	-	.	g6.t1
Contig22090	AUGUSTUS	stop_codon	89306	89308	.	-	0	transcript_id "g6.t1"; gene_id "g6";
Contig22090	AUGUSTUS	CDS	89306	89512	0.64	-	0	transcript_id "g6.t1"; gene_id "g6";
Contig22090	AUGUSTUS	start_codon	89510	89512	.	-	0	transcript_id "g6.t1"; gene_id "g6";
# coding sequence = [atggttagaggcacaggctggcacagaggaggacgacgaccgagtcacttggctgggatgaagctaacaggaagactcc
# ggcaaagccacagaagcactccagacagtctctccgcagggggccatctttgtgcaggtcacttcttcgcctttgccctcacaagcatggttgatgat
# gtgatctgtaaacaaaaagaaaaatgttaa]
# protein sequence = [MVRGTGWHRGGRRPSHLAGMKLTGRLRQSHRSTPDSLSAGGHLCAGHFFAFALTSMVDDVICKQKEKC]
# end gene g6
###
# command line:
# /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG093701S0.prfl --predictionStart=29122  --predictionEnd=90116  --species=BUSCO_20180911_busco_2432604931 ./tmp/Contig2209020180911_busco_2432604931_.temp