# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), # Using native and syntenically mapped cDNA alignments to improve de novo gene finding # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 # No extrinsic information on sequences given. # Initialising the parameters using config directory /augustus/config/ ... # Using protein profile unknown # --[10..1078]--> unknown_B (56) <--[178..549]--> unknown_E (10) <--[0..1]--> unknown_F (47) <--[0..1]--> unknown_G (52) <--[0..8]--> unknown_H (82) <--[0..9]--> unknown_I (26) <--[0..19]--> unknown_J (10) <--[0..1]--> unknown_K (28) <--[0..5]--> unknown_L (8) <--[0..3]--> unknown_M (46) <--[151..1224]--> unknown_S (34) <--[0..1]--> unknown_T (64) <--[0..1]--> unknown_U (97) <--[10..91]--> unknown_W (16) <--[0..1]--> unknown_X (33) <--[8..76]--> unknown_Y (23) <--[0..1458]-- # fly version. Using default transition matrix. # Looks like ./tmp/Contig3218720180911_busco_2432604931_.temp is in fasta format. # We have hints for 0 sequences and for 0 of the sequences in the input set. # # ----- prediction on sequence number 1 (length = 42471, name = Contig32187) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 1 on both strands # start gene g1 Contig32187 AUGUSTUS gene 4456 37327 0.01 + . g1 Contig32187 AUGUSTUS transcript 4456 37327 0.01 + . g1.t1 Contig32187 AUGUSTUS tss 4456 4456 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 4456 4599 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 5825 6432 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS start_codon 6025 6027 . + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 6433 6549 0.88 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 6650 8783 0.5 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 8939 10234 0.37 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 10376 10958 0.95 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 11226 11344 0.86 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 11477 11699 0.88 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 11827 11931 1 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 12058 12497 0.89 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 12662 12778 0.89 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 12878 13117 0.13 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 13296 13409 0.81 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 13547 13804 0.02 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 13916 15373 0.01 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 15626 15864 0.85 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 16002 16089 0.71 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 16277 16592 0.67 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 16794 16888 0.94 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 16971 17092 0.55 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 17186 17277 0.54 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 17371 19849 0.58 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 20048 20145 0.97 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 20256 21161 0.9 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 21322 21410 1 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 21581 21672 1 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 21870 22377 0.96 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 22697 22909 0.86 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 23090 23319 0.33 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 23398 23502 0.33 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 25480 27779 0.82 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 27816 27924 0.99 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 28082 28624 0.99 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 28843 28979 0.98 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 29211 29354 0.98 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 29643 34095 0.28 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 34277 35825 0.94 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS intron 35928 36014 0.93 + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 6025 6432 0.38 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 6550 6649 0.87 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 6550 6649 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 8784 8938 0.51 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 8784 8938 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 10235 10375 0.45 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 10235 10375 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 10959 11225 1 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 10959 11225 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 11345 11476 0.86 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 11345 11476 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 11700 11826 0.99 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 11700 11826 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 11932 12057 1 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 11932 12057 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 12498 12661 0.89 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 12498 12661 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 12779 12877 0.89 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 12779 12877 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 13118 13295 0.13 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 13118 13295 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 13410 13546 0.85 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 13410 13546 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 13805 13915 0.02 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 13805 13915 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 15374 15625 0.96 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 15374 15625 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 15865 16001 0.84 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 15865 16001 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 16090 16276 0.66 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 16090 16276 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 16593 16793 0.83 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 16593 16793 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 16889 16970 0.94 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 16889 16970 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 17093 17185 0.52 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 17093 17185 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 17278 17370 0.71 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 17278 17370 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 19850 20047 0.87 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 19850 20047 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 20146 20255 0.97 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 20146 20255 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 21162 21321 0.9 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 21162 21321 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 21411 21580 1 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 21411 21580 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 21673 21869 1 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 21673 21869 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 22378 22696 0.86 + 1 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 22378 22696 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 22910 23089 0.96 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 22910 23089 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 23320 23397 0.33 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 23320 23397 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 23503 25479 0.12 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 23503 25479 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 27780 27815 0.99 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 27780 27815 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 27925 28081 1 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 27925 28081 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 28625 28842 0.98 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 28625 28842 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 28980 29210 0.99 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 28980 29210 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 29355 29642 0.95 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 29355 29642 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 34096 34276 0.49 + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 34096 34276 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 35826 35927 0.95 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 35826 35927 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS CDS 36015 36931 0.8 + 2 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS exon 36015 37327 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS stop_codon 36929 36931 . + 0 transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS tts 37327 37327 . + . transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 10274 10375 3.4 + 0 target "unknown_B[1..34]"; target_start 234; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 10959 11024 4.44 + 0 target "unknown_B[35..56]"; target_start 234; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 12875 12877 0.664 + 0 target "unknown_E[1..1]"; target_start 572; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 13118 13144 5.49 + 0 target "unknown_E[2..10]"; target_start 572; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 13145 13285 9.83 + 0 target "unknown_F[1..47]"; target_start 582; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 13289 13295 5.88 + 0 target "unknown_G[1..3]"; target_start 630; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 13410 13546 10.5 + 1 target "unknown_G[3..49]"; target_start 629; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 13805 13816 13.5 + 0 target "unknown_G[49..52]"; target_start 630; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 13817 13915 9.33 + 0 target "unknown_H[1..33]"; target_start 682; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 15374 15520 11.1 + 0 target "unknown_H[34..82]"; target_start 682; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 15521 15598 6.46 + 0 target "unknown_I[1..26]"; target_start 764; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 15599 15625 5.87 + 0 target "unknown_J[1..9]"; target_start 790; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 15865 15867 9.42 + 0 target "unknown_J[10..10]"; target_start 790; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 15868 15951 7.22 + 0 target "unknown_K[1..28]"; target_start 800; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 15967 15990 9.83 + 0 target "unknown_L[1..8]"; target_start 833; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 16000 16001 1 + 0 target "unknown_M[1..1]"; target_start 844; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 16090 16225 7.12 + 1 target "unknown_M[1..46]"; target_start 844; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 21222 21321 3.86 + 0 target "unknown_S[1..34]"; target_start 1186; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 21411 21412 1 + 2 target "unknown_S[34..34]"; target_start 1186; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 21413 21580 8.35 + 0 target "unknown_T[1..56]"; target_start 1220; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 21673 21696 6.6 + 0 target "unknown_T[57..64]"; target_start 1220; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 21697 21869 7.37 + 0 target "unknown_U[1..58]"; target_start 1284; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 22378 22495 7.84 + 1 target "unknown_U[58..97]"; target_start 1284; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 22667 22696 1.83 + 0 target "unknown_W[1..10]"; target_start 1438; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 22910 22927 4.82 + 0 target "unknown_W[11..16]"; target_start 1438; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 22928 23026 3.58 + 0 target "unknown_X[1..33]"; target_start 1454; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 23075 23089 1.29 + 0 target "unknown_Y[1..5]"; target_start 1503; transcript_id "g1.t1"; gene_id "g1"; Contig32187 AUGUSTUS protein_match 23320 23373 3.85 + 0 target "unknown_Y[6..23]"; target_start 1503; transcript_id "g1.t1"; gene_id "g1"; # coding sequence = [atgctgggaacaagtacttcagcctcagtgtctagtagtagaccattggtagattcaaaacctccggcattaaatttaa # cttttccaaacttgactgcatatgctaatcagtctggtccatctcccaagaagaaagtcaagttagaggaaaagcctgcggccacccaggagatagca # aatcatagaaaattgattttggatctgaagtataaaaatatgatagatataaaagaaccatacatagacaacctgacagaaatgttcttcctacaaaa # cggagggaatttgatggattttcttgcatggaagaaaagaccaactccacagttggttcactttttgaaatccgggagtttggatagtgatgatgaag # aagaaagtagtttggagagaaaaattaataatgaggtgaaggtgatcacatgcagtggaagcaatgtcccattggcaacacctgtagctatatcaacc # actctacctccatctgtagctgccttaaatcaacaagaggactgtttctaccacaactgtgaccacgattactgtctcagctcctgtatcaatgccac # aactccaaagtcatctagccaaggccattacagagagcaaatcttcactggctcagacgtcttctaccaagtccagtgctgctgcctctcccatgtag # caaaaatggtatccaaatatttccaagatcttgaacagagagaaataagagcagagaaggaagaggctttgaaactgaaaaaaatagctagtcaaatg # gctaaacagattcgggaattctggaacaatattgagaaggtggttcagtacaaagcacaagcaagactagaggagaaaagaaagaaagctttggattt # gcacttgaattttattgtggaccaaacggagaaatattccacttggctaactgaaggactaaagaaggaagggacctcgataggaagcgggtccagta # cagtaacgccagcccacagtgatgcgggagacgaagagttcaaaccaaccaaagaagaggaatccgatgatgaagagacgattgaaaaggaagaagct # gaactggatcagcttaataccaaagcagagttggatgctttgcagaaggaaagtgaacttcccattgaggaactcttgaaaacattgccaaaagaagt # tttagaaaatcccgttcccttaccctcagatgtgccagatgaagaggaggagaaagattcagaattcaaagcaactgaagatgagaaagatgaagaag # acacgatagctgagcaggaggaacaagaaaagaaaatagattattccaaggagttaacagatctaaaggatgaaagtgaaatgaccatggatgagtta # tatcagaagtatgcaggagcttacgacagtgactttgaaatgccagaagaagaggaagaagacagtgaagaggaagattcagaggaggaagaggagag # tgatgtcctgaacttattgggaattatgaatgtcatttcaaaattgtctgatttgaatttagaagaagatgaggaggaagaagaagaaagtatggaag # aagacactgcagagaaagatgatgttggactggagtttttaacacagaaagacaatgactctaaatctcagggtgattatgatcaggagggtccaggg # aaagaaattaatgatattgcagcacaggcccaaagtcttcaacccaaaggctacaccctggaaacaacaactgttaaaacagctgtgccattcttgct # gaaacatacattacgagaatatcaacatgttggattagattggcttgccactatgtatgagcaaagactgaatggaattttggctgatgagatgggtc # ttggaaagacaattcagacgattgctctattagctcatttggcctgtgagaaaagtatatggggaccccatttaattgttgttccaacgagtgtaatg # cttaattgggagatggagataaagaaatggtgtccagcattcaaaatactcacatattatggatctctaaaggaaagaaagcttaagagacagggttg # gaccaaaaccaatgcctttcatatctgtataacatcttataagcttgttatacaagaccaccagtctttcagaagaaaaaagtggaaatattttatat # tggatgaggcccagaatataaaaaatttcaagtctcaaagatggcagactcttctcaacttctcaagtcagagacgtctgctgttgactgggacgcct # ctccagaacagtttgatggagttgtggtccctgatgcactttcttatgcctcatgtgttccagtcccatagagaattcaaagaatggtttgctaatcc # tctaacgggaatgattgagggaagtcacgaatacaatgaaagtctcatcaaaagactacacaaggttctgaggccgttcttgttgcgtcgactgaagc # aggatgtggaaaagcagatgcccaagaaatatgaacatgttatcatgtgtcacctttccaagagacaaagatacctttatgatgatttcatggctcag # gcaaagacaaaagaaacacttgccactggacatttcatgagtgtaatcaatatcttaatgcaactgagaaaagtctgcaaccatccaagtctttttga # tccaagaccaattgtatcaccattcaaaacagatggcattaatttcttggttccgtcactggtgctgaattgcttgaattatgatcctttcattgaaa # ttgatttacgctccctgtaccccagcttggctgacatggagttaaatctgccagcttttgtggcacatagagtgaaaaaacttcagactccgaaaaga # ttgattgaggaaatagacagtgaaccagagccgcagagcagtctcccaccaggaaagcttaaaccagttatcttcaagggaatcgcttctgttcaagc # aaccggaagagcatcacccactgctgctgggaaaagtacccctgcttctcctgctgttctatctacagtgaagacagaaacagtgaatggtgttccta # tggagactgtacgtaccccagttacaagtgcaataccttcttcagtaccacagccagtcaaagctcagacacagccagctggagttcagcagcctctc # actttccagattcaccactcggatcagggagcccgtctgatgattcccgcaggtcagctgtcacagttaccagtcaatggcccacccacaataacaac # agttgcttcttcaacctccagtaccttggtaacgagtgtcaatgctcaagtgaagaccactccagcagtacaactgccaaccagcaccactggtataa # ccacttcaaaacctgtcatgagggtttctccactatcctctgtggtgccatccacatccactcaggacccttctgtatccaagccgtccacagcacag # gtgacgacgactatgtcacttaagtcatctaagatgtctgttttgcagtgtgaacctgtgcaaaacaaaagctctccattttacatgcttcatgcttc # acatccttctccctcctacctcagtgagcaaaggagaaccgagttctgccttagacaacacatctcgccaaaaaatgcttgtcttcatcaaatctcct # ccaaaatggctgttcagttcccagagctgcgcttaattcagtatgactgtggaaagctacaagtgatggatacgttgttgagaaaacttaagtcagga # agtcacagagtgctcatcttcacccaaatgaccaaaatgttgaatattttggaagcttttctgaattaccatggtcataggtatcttcgattagatgg # tactaccaaggtggaacagcgacagtttcttatggagcggttcaatgcagacaaagcggataaatttgccttatttatcactcgttcaggaggtattg # gtgtgaacttaaccggagcagatactgtaatattttatgacagtgattggaatccaaccatggatgctcaagcccaagacaggtgtcacaggatagga # cagactagagatgttcacatttacaggttaattagtgaacgaacagttgaagagaacatcttaaagaaggcgaaccagaaaagaatgctaggtgatat # ggctattgagggaggcaacttcactacttccttcttcaaacagcagaccatacaggacttgttcactgaaccatcaggtctacaaagcttggcaactg # aaatatcagaaaaagaaaagatcaaagagactgtgaccgtgaagaaagagatcagagagactgtgactgaggaaactaaagcagggggtgatgctaag # gcagacaccatggtgcagtcagagaagaacatcatggctcagtttgagaaggttttagcaaaggccgaggatgagactgatgtgcaagcaacagatct # tgttaaagctgagcagaaagcagaattggctgagttcgatgaaaacattccatgggacgagagagaagcagagctcaagaaagaggaggaactgtcca # aagtagaacaggaaattgctatgctagacaaggagctttctccagttgagcgctatgcagtcaatttcatggagctggaaatggatccactagaggaa # ttggaaatgggagaggatgacatcgaaaatgtcaagaaagactgggaacttggtcgtctaaaggcattgaaagaggaggaggaaagaagagccgagtt # ggaggaagatgaaatgttgtacatcttctcaagggatgatgcctataaccaggtgaagaaaaagcccaagaaagcccagaaggcaatcaaaacaccag # ccaaagtggtcactccctctcgcattaccccaaacagaaacaaaactaagcaatttaatgatgatgagtacattccatcgtctggcagggctgtaaag # gttacacctaaaatggcagccactaaaacgactatctcccctaggtttggtgttgggcgaaataaaaagtccaacaaagttttagccaaagctgaagc # tgttgtagtgaatgaagagggagaccgtgctatcaatgttacctttaagagtaaacccaaatctgccaaagtaaacaaaaaagtgttcgttgataaca # atgtcacaattcctaatgatgagtctgcatcagatgtagacaccacacccaagttagtacttcaacagaaaaggggtcgtgggaggccctctatcctt # aagcaaaataaagaaacaacacctgaaaaagttgttgcaaccccacaaaagcctgtgatatcaagtattgcttcaccccagaaaatagttcagttatc # acaggctcacatccagcaggtacaagaacagttagcgaaagctcggcaaacctcgaccagtcaaccaaccattgcccagctcatgtaccaagcacatc # agcagcaaccctcaatccagtttgccagacagtcagccccaactttaccccagcaacccattaccagctcacagttgttatctgcctcccaactgcaa # catcttaaacaaataatctcaaaagctgctcatacaaatcttgccaaggttgcaccccccaaatccaatctaacaggcatagtgcagactggtcaaca # aaatttgatacaacagttaagtgtcaagtcaccttcaaaccagcctgccattcagcttgttgggcagacatcggttattgctcaacctcagggtgttg # cagtttctccccaggttgctcaaattgtcaatcaaggtcagggtcagactattcagtacatcacccaacctgctcaggtgaccactgcacggcccact # caggctatacagcaagtggtgtcccataatagtgccggacagcctaccgtacagttcatcaaggtcaactcctcgaacacccagcagcctgtcttgca # gtactgtgtcaacaattctgtcggcaatgcaggtcaagtcagaattcaaggcaatggcccacagaatcagcagggtgtggtattcctccaattaggag # ggggtaaagctatcccagtgtctttaggtcagggatcaccgatgtctgttccaatggccagacttgtagctagtagggctgtaccaaacagcagtcag # aaagttgcccatgttgtacaacagaatgcactgccccaacaatacattgctagaaatattcaaccaacaagaatatcagcacctatatcaaggtttca # gactacagttgtagcaagccagggcaacctagtcccacaaaatagcccactagtttctaaccctcagtcttctggtataccgactgttgtacaacagg # cccggtatagaattcccaaaatcaatcaacagccagttaaagaaagtccaacgacaaacacttcaaccacacctgccccattttggaatcccaatctg # gttattcgtactagaaaagcggtcgctcagcccgaagaacaaagagatgttagtgacaatcttccctttgtgataggaaactccaatccccccacaac # acagaccaatactaatggagggtctcccaatcagtttattagtttactaaaggctggagcaacttctggtcaagtgtccaatgttgtgataaaacaaa # atgctattgtatcctctcaggggaccgttgttgtcttcctctcggatattgatcaggaaaaaatgccgctatgggcgccacctaccccaccgcatgat # gataacgatatctacatagaccagagcctgctgtttctgtatgagcctaatgtgatgccagagacacaacttccaccagtctacatcaagaaggaaca # caaaaaacccaaaattgaatctatcacaacacgccagaaaaaacagcgcaaggaggaacagacaagagtgcccagatcgctgttcgaccgtccttcag # ctcagctattaaagattcgcagagaacacaaacaaaagagtggtcttctcaagcccttccgaccggtgcctccacctatcgtcaaacccaatgtggat # actgcagatcacccagaatggcttatccatgaggactgggctctccttcaggctgtgcaaagtttgtttgatgttcctctgaacttgttggttgtgtc # tcctgcacatcacccaaactgggacctggtggctgatgttgtcaacacctgtagtcgggtgtatcgctctgccaagcagtgtaagaatcgatacgaaa # atgtcattattcccagagaggagggcaggattctctatgatatcaacccaagaaagcagagcaaaaagaccaagggaatatacaagacgaaaaacaat # cgaccaatgaggaccagtcagttgtatatccaagacaacaaccaggcggtgaccatgttgtattcattccggtttgagtcatcgaagcagatagcagg # aaagaggccacctcctttgaaacaaacattggtcaaccccaccttgaaaaatcctaagcatgccacagtgttgtccgagaataacattaactatgacc # atccgctgaatccgatgagtgtggctgagatccgtgctcagcggatacagagggaaaagaaacagagccaggcagctgctcttacgacagcacagtta # attcctcaggcacaagttcagcacatagcccagacagctacagttgctggaacctcaggaacacagctggtaaagactgtgtctgctcctgctagtgg # agttcagatcccggtcagcacggtcaacataaatgtcagtgtaccacaacaaaaaggactggtgggtaaatctgccagtgtgagccaacttccacaag # caaaaatccaacaaattcaacagatgcaaatgaggcatcaactatcaaagcagccacagaaaatcacctcagtaagccagccatttggaaaaggacaa # agttttccactgaatgctgtccagatcattcagcagccggcctcgggcacaggtggacgacagcatttgacctactctctgcaacaaattatgcaaca # aaacaaaggttcaggcatgatcatcacatctcaacccattattaccaccgtaacacagagtcagcaacccacggggcaaatcatgacaaaagttctgg # gtacctcagttcccacaactcatcttcagactttgtctgccacacccatttctgtttctcatgtttcagctgtacaagcttctaatgtaacggctcag # ccagctgcctcgtccatcagcatcacgggagtggccggccaacctgggaaacccctgactgtcacaacagtggcccaggacgccagctcgggtactac # catacaggtgcagccaacagcatcagctcaacaaggatcgcaaactacaacgcaacagttgataccacagacgcaggttgtccaacaggtaccggtag # catcacacacccctcagaaaatcatcacccaaactgcccaccagatacaggtcactccgggaaccatccaacaagtgcagactggcagcattgcccag # actgggtcctccacccccactgctgtcactgtgacgatcaccccggccgctcagtcctctcctagtacgggaacactgattcagcagccagtgatagt # aacccagacagcccaagccacctcccagcccagcacagtcacctcccaggcagccttagcggcagcagcagccctgccagccgcgactgtaacggtgg # catctgctgctcagtccgccagtcttcctcagcagacgacaccaggtactgccaaaccagcggctccgtacgccatgaggacgagaaatcaccccaaa # acatga] # protein sequence = [MLGTSTSASVSSSRPLVDSKPPALNLTFPNLTAYANQSGPSPKKKVKLEEKPAATQEIANHRKLILDLKYKNMIDIKE # PYIDNLTEMFFLQNGGNLMDFLAWKKRPTPQLVHFLKSGSLDSDDEEESSLERKINNEVKVITCSGSNVPLATPVAISTTLPPSVAALNQQEDCFYHN # CDHDYCLSSCINATTPKSSSQGHYREQIFTGSDVFYQVQCCCLSHVAKMVSKYFQDLEQREIRAEKEEALKLKKIASQMAKQIREFWNNIEKVVQYKA # QARLEEKRKKALDLHLNFIVDQTEKYSTWLTEGLKKEGTSIGSGSSTVTPAHSDAGDEEFKPTKEEESDDEETIEKEEAELDQLNTKAELDALQKESE # LPIEELLKTLPKEVLENPVPLPSDVPDEEEEKDSEFKATEDEKDEEDTIAEQEEQEKKIDYSKELTDLKDESEMTMDELYQKYAGAYDSDFEMPEEEE # EDSEEEDSEEEEESDVLNLLGIMNVISKLSDLNLEEDEEEEEESMEEDTAEKDDVGLEFLTQKDNDSKSQGDYDQEGPGKEINDIAAQAQSLQPKGYT # LETTTVKTAVPFLLKHTLREYQHVGLDWLATMYEQRLNGILADEMGLGKTIQTIALLAHLACEKSIWGPHLIVVPTSVMLNWEMEIKKWCPAFKILTY # YGSLKERKLKRQGWTKTNAFHICITSYKLVIQDHQSFRRKKWKYFILDEAQNIKNFKSQRWQTLLNFSSQRRLLLTGTPLQNSLMELWSLMHFLMPHV # FQSHREFKEWFANPLTGMIEGSHEYNESLIKRLHKVLRPFLLRRLKQDVEKQMPKKYEHVIMCHLSKRQRYLYDDFMAQAKTKETLATGHFMSVINIL # MQLRKVCNHPSLFDPRPIVSPFKTDGINFLVPSLVLNCLNYDPFIEIDLRSLYPSLADMELNLPAFVAHRVKKLQTPKRLIEEIDSEPEPQSSLPPGK # LKPVIFKGIASVQATGRASPTAAGKSTPASPAVLSTVKTETVNGVPMETVRTPVTSAIPSSVPQPVKAQTQPAGVQQPLTFQIHHSDQGARLMIPAGQ # LSQLPVNGPPTITTVASSTSSTLVTSVNAQVKTTPAVQLPTSTTGITTSKPVMRVSPLSSVVPSTSTQDPSVSKPSTAQVTTTMSLKSSKMSVLQCEP # VQNKSSPFYMLHASHPSPSYLSEQRRTEFCLRQHISPKNACLHQISSKMAVQFPELRLIQYDCGKLQVMDTLLRKLKSGSHRVLIFTQMTKMLNILEA # FLNYHGHRYLRLDGTTKVEQRQFLMERFNADKADKFALFITRSGGIGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEEN # ILKKANQKRMLGDMAIEGGNFTTSFFKQQTIQDLFTEPSGLQSLATEISEKEKIKETVTVKKEIRETVTEETKAGGDAKADTMVQSEKNIMAQFEKVL # AKAEDETDVQATDLVKAEQKAELAEFDENIPWDEREAELKKEEELSKVEQEIAMLDKELSPVERYAVNFMELEMDPLEELEMGEDDIENVKKDWELGR # LKALKEEEERRAELEEDEMLYIFSRDDAYNQVKKKPKKAQKAIKTPAKVVTPSRITPNRNKTKQFNDDEYIPSSGRAVKVTPKMAATKTTISPRFGVG # RNKKSNKVLAKAEAVVVNEEGDRAINVTFKSKPKSAKVNKKVFVDNNVTIPNDESASDVDTTPKLVLQQKRGRGRPSILKQNKETTPEKVVATPQKPV # ISSIASPQKIVQLSQAHIQQVQEQLAKARQTSTSQPTIAQLMYQAHQQQPSIQFARQSAPTLPQQPITSSQLLSASQLQHLKQIISKAAHTNLAKVAP # PKSNLTGIVQTGQQNLIQQLSVKSPSNQPAIQLVGQTSVIAQPQGVAVSPQVAQIVNQGQGQTIQYITQPAQVTTARPTQAIQQVVSHNSAGQPTVQF # IKVNSSNTQQPVLQYCVNNSVGNAGQVRIQGNGPQNQQGVVFLQLGGGKAIPVSLGQGSPMSVPMARLVASRAVPNSSQKVAHVVQQNALPQQYIARN # IQPTRISAPISRFQTTVVASQGNLVPQNSPLVSNPQSSGIPTVVQQARYRIPKINQQPVKESPTTNTSTTPAPFWNPNLVIRTRKAVAQPEEQRDVSD # NLPFVIGNSNPPTTQTNTNGGSPNQFISLLKAGATSGQVSNVVIKQNAIVSSQGTVVVFLSDIDQEKMPLWAPPTPPHDDNDIYIDQSLLFLYEPNVM # PETQLPPVYIKKEHKKPKIESITTRQKKQRKEEQTRVPRSLFDRPSAQLLKIRREHKQKSGLLKPFRPVPPPIVKPNVDTADHPEWLIHEDWALLQAV # QSLFDVPLNLLVVSPAHHPNWDLVADVVNTCSRVYRSAKQCKNRYENVIIPREEGRILYDINPRKQSKKTKGIYKTKNNRPMRTSQLYIQDNNQAVTM # LYSFRFESSKQIAGKRPPPLKQTLVNPTLKNPKHATVLSENNINYDHPLNPMSVAEIRAQRIQREKKQSQAAALTTAQLIPQAQVQHIAQTATVAGTS # GTQLVKTVSAPASGVQIPVSTVNINVSVPQQKGLVGKSASVSQLPQAKIQQIQQMQMRHQLSKQPQKITSVSQPFGKGQSFPLNAVQIIQQPASGTGG # RQHLTYSLQQIMQQNKGSGMIITSQPIITTVTQSQQPTGQIMTKVLGTSVPTTHLQTLSATPISVSHVSAVQASNVTAQPAASSISITGVAGQPGKPL # TVTTVAQDASSGTTIQVQPTASAQQGSQTTTQQLIPQTQVVQQVPVASHTPQKIITQTAHQIQVTPGTIQQVQTGSIAQTGSSTPTAVTVTITPAAQS # SPSTGTLIQQPVIVTQTAQATSQPSTVTSQAALAAAAALPAATVTVASAAQSASLPQQTTPGTAKPAAPYAMRTRNHPKT] # sequence of block unknown_B 234 [QREIRAEKEEALKLKKIASQMAKQIREFWNNIEKVVQYKAQARLEEKRKKALDLHL] 290 # sequence of block unknown_E 572 [TVKTAVPFLL] 582 # sequence of block unknown_F 582 [KHTLREYQHVGLDWLATMYEQRLNGILADEMGLGKTIQTIALLAHLA] 629 # sequence of block unknown_G 630 [EKSIWGPHLIVVPTSVMLNWEMEIKKWCPAFKILTYYGSLKERKLKRQGWTK] 682 # sequence of block unknown_H 682 [TNAFHICITSYKLVIQDHQSFRRKKWKYFILDEAQNIKNFKSQRWQTLLNFSSQRRLLLTGTPLQNSLMELWSLMHFLMPHV] 764 # sequence of block unknown_I 764 [FQSHREFKEWFANPLTGMIEGSHEYN] 790 # sequence of block unknown_J 790 [ESLIKRLHKV] 800 # sequence of block unknown_K 800 [LRPFLLRRLKQDVEKQMPKKYEHVIMCH] 828 # sequence of block unknown_L 833 [RYLYDDFM] 841 # sequence of block unknown_M 844 [KTKETLATGHFMSVINILMQLRKVCNHPSLFDPRPIVSPFKTDGIN] 890 # sequence of block unknown_S 1186 [LRQHISPKNACLHQISSKMAVQFPELRLIQYDCG] 1220 # sequence of block unknown_T 1220 [KLQVMDTLLRKLKSGSHRVLIFTQMTKMLNILEAFLNYHGHRYLRLDGTTKVEQRQFLMERFNA] 1284 # sequence of block unknown_U 1284 [DKADKFALFITRSGGIGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTSFFKQQ] 1381 # sequence of block unknown_W 1438 [EKNIMAQFEKVLAKAE] 1454 # sequence of block unknown_X 1454 [DETDVQATDLVKAEQKAELAEFDENIPWDEREA] 1487 # sequence of block unknown_Y 1503 [MLDKELSPVERYAVNFMELEMDP] 1526 # end gene g1 ### # command line: # /augustus/bin/augustus --codingseq=1 --proteinprofile=eukaryota_odb9/prfl/EOG093701IQ.prfl --predictionStart=0 --predictionEnd=42471 --species=fly ./tmp/Contig3218720180911_busco_2432604931_.temp