#Starting miRDeep2
/home/shared/mirdeep2/bin/miRDeep2.pl /home/shared/8TB_HDD_01/sam/data/P_evermanni/sRNAseq/mirtrace.config.output/qc_passed_reads.all.collapsed/20230809-peve-miRNA-mirdeep2-no_spaces-sRNA-POR-73-S1-TP2.flexbar_trim.20230621_1.fasta /home/shared/8TB_HDD_01/sam/data/P_evermanni/genomes/Porites_evermanni_v1.fa 20230809-peve-miRNA-mirdeep2-no_spaces-sRNA-POR-73-S1-TP2.flexbar_trim.20230621_1.fasta.arf none none none

miRDeep2 started at 15:16:11


mkdir mirdeep_runs/run_09_08_2023_t_15_16_11

readline() on closed filehandle IN at /home/shared/mirdeep2/bin/miRDeep2.pl line 315.
Use of uninitialized value $line in scalar chomp at /home/shared/mirdeep2/bin/miRDeep2.pl line 316.
Use of uninitialized value $line in pattern match (m//) at /home/shared/mirdeep2/bin/miRDeep2.pl line 317.
Error: The first line of file /home/shared/8TB_HDD_01/sam/data/P_evermanni/sRNAseq/mirtrace.config.output/qc_passed_reads.all.collapsed/20230809-peve-miRNA-mirdeep2-no_spaces-sRNA-POR-73-S1-TP2.flexbar_trim.20230621_1.fasta does not start with '>identifier'
Reads file /home/shared/8TB_HDD_01/sam/data/P_evermanni/sRNAseq/mirtrace.config.output/qc_passed_reads.all.collapsed/20230809-peve-miRNA-mirdeep2-no_spaces-sRNA-POR-73-S1-TP2.flexbar_trim.20230621_1.fasta is not a valid fasta file