Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
26996226 reads; of these:
  26996226 (100.00%) were paired; of these:
    20564349 (76.17%) aligned concordantly 0 times
    6166153 (22.84%) aligned concordantly exactly 1 time
    265724 (0.98%) aligned concordantly >1 times
    ----
    20564349 pairs aligned concordantly 0 times; of these:
      6755459 (32.85%) aligned discordantly 1 time
    ----
    13808890 pairs aligned 0 times concordantly or discordantly; of these:
      27617780 mates make up the pairs; of these:
        12863431 (46.58%) aligned 0 times
        13552957 (49.07%) aligned exactly 1 time
        1201392 (4.35%) aligned >1 times
76.18% overall alignment rate