Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R1.fastq.gz... 56df3baea4d0e9042b150f9e625f35ee /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.343s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.746s] Opening the output file... [1.311s] Loading query sequences... [106.792s] Masking queries... [31.782s] Algorithm: Double-indexed Building query histograms... [21.3s] Loading reference sequences... [29.5s] Masking reference... [31.917s] Initializing dictionary... [0.081s] Initializing temporary storage... [0.017s] Building reference histograms... [32.695s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.726s] Building query seed array... [2.637s] Computing hash join... [5.508s] Masking low complexity seeds... [0.317s] Searching alignments... [432.836s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.614s] Building query seed array... [2.95s] Computing hash join... [5.402s] Masking low complexity seeds... [0.32s] Searching alignments... [180.69s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.559s] Building query seed array... [3.069s] Computing hash join... [5.402s] Masking low complexity seeds... [0.322s] Searching alignments... [140.158s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.981s] Building query seed array... [2.563s] Computing hash join... [5.31s] Masking low complexity seeds... [0.323s] Searching alignments... [134.418s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.376s] Building query seed array... [2.354s] Computing hash join... [5.212s] Masking low complexity seeds... [0.313s] Searching alignments... [190.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.079s] Building query seed array... [2.609s] Computing hash join... [5.125s] Masking low complexity seeds... [0.297s] Searching alignments... [160.692s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.131s] Building query seed array... [2.735s] Computing hash join... [5.143s] Masking low complexity seeds... [0.293s] Searching alignments... [116.75s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.243s] Building query seed array... [2.414s] Computing hash join... [5.153s] Masking low complexity seeds... [0.312s] Searching alignments... [126.207s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.739s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [10.805s] Sorting trace points... [1.383s] Computing alignments... [48.333s] Deallocating buffers... [0.043s] Loading trace points... [0.077s] Sorting trace points... [1.586s] Computing alignments... [48.7s] Deallocating buffers... [0.03s] Loading trace points... [0.081s] Sorting trace points... [1.897s] Computing alignments... [48.701s] Deallocating buffers... [0.033s] Loading trace points... [0.083s] Sorting trace points... [1.926s] Computing alignments... [52.326s] Deallocating buffers... [0.041s] Loading trace points... [0.002s] Sorting trace points... [1.324s] Computing alignments... [49.666s] Deallocating buffers... [0.035s] Loading trace points... [0.043s] Sorting trace points... [1.778s] Computing alignments... [49.06s] Deallocating buffers... [0.038s] Loading trace points... [0.481s] Sorting trace points... [1.474s] Computing alignments... [48.562s] Deallocating buffers... [0.035s] Loading trace points... [0.082s] Sorting trace points... [1.806s] Computing alignments... [51.284s] Deallocating buffers... [0.04s] Loading trace points... [0.07s] Sorting trace points... [1.786s] Computing alignments... [49.284s] Deallocating buffers... [0.038s] Loading trace points... [0.062s] Sorting trace points... [1.868s] Computing alignments... [49.465s] Deallocating buffers... [0.039s] Loading trace points... [0.055s] Sorting trace points... [1.515s] Computing alignments... [50.773s] Deallocating buffers... [0.037s] Loading trace points... [0.086s] Sorting trace points... [1.762s] Computing alignments... [51.225s] Deallocating buffers... [0.036s] Loading trace points... [0.079s] Sorting trace points... [1.851s] Computing alignments... [49.136s] Deallocating buffers... [0.038s] Loading trace points... [0.061s] Sorting trace points... [1.86s] Computing alignments... [50.132s] Deallocating buffers... [0.034s] Loading trace points... [0.079s] Sorting trace points... [1.842s] Computing alignments... [49.526s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.724s] Computing alignments... [50.128s] Deallocating buffers... [0.025s] Loading trace points... [0s] [836.446s] Deallocating reference... [0.059s] Loading reference sequences... [29.524s] Masking reference... [30.904s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.81s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.73s] Building query seed array... [2.601s] Computing hash join... [5.357s] Masking low complexity seeds... [0.316s] Searching alignments... [413.826s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.459s] Building query seed array... [2.944s] Computing hash join... [5.377s] Masking low complexity seeds... [0.33s] Searching alignments... [177.203s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.058s] Building query seed array... [3.106s] Computing hash join... [5.381s] Masking low complexity seeds... [0.314s] Searching alignments... [135.822s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.123s] Building query seed array... [2.506s] Computing hash join... [5.309s] Masking low complexity seeds... [0.31s] Searching alignments... [133.163s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.324s] Building query seed array... [2.306s] Computing hash join... [5.11s] Masking low complexity seeds... [0.3s] Searching alignments... [200.828s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.367s] Building query seed array... [2.682s] Computing hash join... [5.159s] Masking low complexity seeds... [0.303s] Searching alignments... [157.085s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.951s] Building query seed array... [2.735s] Computing hash join... [5.224s] Masking low complexity seeds... [0.299s] Searching alignments... [113.567s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.234s] Building query seed array... [2.312s] Computing hash join... [5.201s] Masking low complexity seeds... [0.304s] Searching alignments... [120.852s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.601s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.718s] Sorting trace points... [1.903s] Computing alignments... [51.82s] Deallocating buffers... [0.037s] Loading trace points... [0.062s] Sorting trace points... [1.84s] Computing alignments... [50.972s] Deallocating buffers... [0.034s] Loading trace points... [0.069s] Sorting trace points... [1.78s] Computing alignments... [51.969s] Deallocating buffers... [0.023s] Loading trace points... [0.058s] Sorting trace points... [1.897s] Computing alignments... [56.562s] Deallocating buffers... [0.04s] Loading trace points... [0.067s] Sorting trace points... [1.808s] Computing alignments... [53.47s] Deallocating buffers... [0.041s] Loading trace points... [0.08s] Sorting trace points... [1.853s] Computing alignments... [52.006s] Deallocating buffers... [0.027s] Loading trace points... [0.035s] Sorting trace points... [1.43s] Computing alignments... [52.561s] Deallocating buffers... [0.036s] Loading trace points... [0.076s] Sorting trace points... [1.582s] Computing alignments... [54.891s] Deallocating buffers... [0.039s] Loading trace points... [0.058s] Sorting trace points... [1.829s] Computing alignments... [52.997s] Deallocating buffers... [0.032s] Loading trace points... [0.079s] Sorting trace points... [1.827s] Computing alignments... [52.693s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.611s] Computing alignments... [53.899s] Deallocating buffers... [0.034s] Loading trace points... [0.055s] Sorting trace points... [2.015s] Computing alignments... [55.033s] Deallocating buffers... [0.025s] Loading trace points... [0.055s] Sorting trace points... [1.873s] Computing alignments... [52.713s] Deallocating buffers... [0.036s] Loading trace points... [0.068s] Sorting trace points... [1.784s] Computing alignments... [53.448s] Deallocating buffers... [0.026s] Loading trace points... [0.083s] Sorting trace points... [1.869s] Computing alignments... [52.689s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.861s] Computing alignments... [53.77s] Deallocating buffers... [0.039s] Loading trace points... [0s] [891.492s] Deallocating reference... [0.072s] Loading reference sequences... [29.759s] Masking reference... [30.879s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.338s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.298s] Building query seed array... [2.652s] Computing hash join... [5.34s] Masking low complexity seeds... [0.319s] Searching alignments... [421.403s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.416s] Building query seed array... [3.007s] Computing hash join... [5.312s] Masking low complexity seeds... [0.339s] Searching alignments... [174.841s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.326s] Building query seed array... [3.061s] Computing hash join... [5.306s] Masking low complexity seeds... [0.317s] Searching alignments... [135.818s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.185s] Building query seed array... [2.498s] Computing hash join... [5.36s] Masking low complexity seeds... [0.308s] Searching alignments... [134.715s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.87s] Building query seed array... [2.274s] Computing hash join... [5.14s] Masking low complexity seeds... [0.296s] Searching alignments... [189.405s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.572s] Building query seed array... [2.68s] Computing hash join... [5.108s] Masking low complexity seeds... [0.295s] Searching alignments... [155.61s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.529s] Building query seed array... [2.764s] Computing hash join... [5.191s] Masking low complexity seeds... [0.308s] Searching alignments... [114.223s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.248s] Building query seed array... [2.342s] Computing hash join... [5.196s] Masking low complexity seeds... [0.307s] Searching alignments... [115.887s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.73s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.725s] Sorting trace points... [1.783s] Computing alignments... [51.123s] Deallocating buffers... [0.036s] Loading trace points... [0.067s] Sorting trace points... [1.854s] Computing alignments... [49.575s] Deallocating buffers... [0.033s] Loading trace points... [0.048s] Sorting trace points... [1.749s] Computing alignments... [51.027s] Deallocating buffers... [0.023s] Loading trace points... [0.098s] Sorting trace points... [1.943s] Computing alignments... [55.213s] Deallocating buffers... [0.035s] Loading trace points... [0.056s] Sorting trace points... [1.887s] Computing alignments... [52.295s] Deallocating buffers... [0.039s] Loading trace points... [0.104s] Sorting trace points... [1.401s] Computing alignments... [50.824s] Deallocating buffers... [0.036s] Loading trace points... [0.076s] Sorting trace points... [1.304s] Computing alignments... [51.396s] Deallocating buffers... [0.035s] Loading trace points... [0.04s] Sorting trace points... [1.909s] Computing alignments... [53.734s] Deallocating buffers... [0.035s] Loading trace points... [0.049s] Sorting trace points... [1.557s] Computing alignments... [52.715s] Deallocating buffers... [0.037s] Loading trace points... [0.072s] Sorting trace points... [1.458s] Computing alignments... [51.326s] Deallocating buffers... [0.036s] Loading trace points... [0.065s] Sorting trace points... [1.889s] Computing alignments... [52.554s] Deallocating buffers... [0.04s] Loading trace points... [0.044s] Sorting trace points... [1.972s] Computing alignments... [53.294s] Deallocating buffers... [0.034s] Loading trace points... [0.047s] Sorting trace points... [1.813s] Computing alignments... [52.446s] Deallocating buffers... [0.034s] Loading trace points... [0.475s] Sorting trace points... [1.818s] Computing alignments... [52.738s] Deallocating buffers... [0.039s] Loading trace points... [0.064s] Sorting trace points... [1.798s] Computing alignments... [51.866s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.456s] Computing alignments... [52.813s] Deallocating buffers... [0.037s] Loading trace points... [0s] [874.212s] Deallocating reference... [0.076s] Loading reference sequences... [29.691s] Masking reference... [30.859s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.55s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.141s] Building query seed array... [2.603s] Computing hash join... [5.395s] Masking low complexity seeds... [0.314s] Searching alignments... [420.74s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.604s] Building query seed array... [2.962s] Computing hash join... [5.35s] Masking low complexity seeds... [0.319s] Searching alignments... [175.205s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.857s] Building query seed array... [3.029s] Computing hash join... [5.267s] Masking low complexity seeds... [0.318s] Searching alignments... [140.042s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.873s] Building query seed array... [2.585s] Computing hash join... [5.338s] Masking low complexity seeds... [0.322s] Searching alignments... [137.133s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.156s] Building query seed array... [2.386s] Computing hash join... [5.137s] Masking low complexity seeds... [0.301s] Searching alignments... [189.897s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.697s] Building query seed array... [2.73s] Computing hash join... [5.194s] Masking low complexity seeds... [0.309s] Searching alignments... [154.718s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.148s] Building query seed array... [2.763s] Computing hash join... [5.143s] Masking low complexity seeds... [0.306s] Searching alignments... [118.03s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.222s] Building query seed array... [2.37s] Computing hash join... [5.105s] Masking low complexity seeds... [0.298s] Searching alignments... [120.819s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.743s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.04s] Sorting trace points... [1.793s] Computing alignments... [53.426s] Deallocating buffers... [0.038s] Loading trace points... [0.105s] Sorting trace points... [1.848s] Computing alignments... [51.894s] Deallocating buffers... [0.033s] Loading trace points... [0.063s] Sorting trace points... [1.383s] Computing alignments... [53.611s] Deallocating buffers... [0.039s] Loading trace points... [0.075s] Sorting trace points... [1.623s] Computing alignments... [58.093s] Deallocating buffers... [0.037s] Loading trace points... [0.068s] Sorting trace points... [1.715s] Computing alignments... [54.894s] Deallocating buffers... [0.035s] Loading trace points... [0.057s] Sorting trace points... [1.395s] Computing alignments... [53.253s] Deallocating buffers... [0.038s] Loading trace points... [0.066s] Sorting trace points... [1.47s] Computing alignments... [54.272s] Deallocating buffers... [0.036s] Loading trace points... [0.094s] Sorting trace points... [1.567s] Computing alignments... [56.229s] Deallocating buffers... [0.036s] Loading trace points... [0.07s] Sorting trace points... [1.392s] Computing alignments... [54.842s] Deallocating buffers... [0.028s] Loading trace points... [0.001s] Sorting trace points... [1.545s] Computing alignments... [54.066s] Deallocating buffers... [0.036s] Loading trace points... [0.051s] Sorting trace points... [1.924s] Computing alignments... [55.375s] Deallocating buffers... [0.035s] Loading trace points... [0.057s] Sorting trace points... [1.427s] Computing alignments... [56.312s] Deallocating buffers... [0.036s] Loading trace points... [0.082s] Sorting trace points... [1.729s] Computing alignments... [54.592s] Deallocating buffers... [0.035s] Loading trace points... [0.06s] Sorting trace points... [1.875s] Computing alignments... [55.404s] Deallocating buffers... [0.026s] Loading trace points... [0.057s] Sorting trace points... [1.598s] Computing alignments... [53.907s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.859s] Computing alignments... [55.598s] Deallocating buffers... [0.038s] Loading trace points... [0s] [913.517s] Deallocating reference... [0.069s] Loading reference sequences... [29.356s] Masking reference... [30.855s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.548s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.35s] Building query seed array... [2.627s] Computing hash join... [5.371s] Masking low complexity seeds... [0.316s] Searching alignments... [416.469s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.457s] Building query seed array... [2.994s] Computing hash join... [5.304s] Masking low complexity seeds... [0.32s] Searching alignments... [176.972s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.389s] Building query seed array... [3.064s] Computing hash join... [5.299s] Masking low complexity seeds... [0.336s] Searching alignments... [136.379s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.459s] Building query seed array... [2.657s] Computing hash join... [5.51s] Masking low complexity seeds... [0.309s] Searching alignments... [135.191s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.108s] Building query seed array... [2.353s] Computing hash join... [5.191s] Masking low complexity seeds... [0.316s] Searching alignments... [193.682s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.146s] Building query seed array... [2.623s] Computing hash join... [5.219s] Masking low complexity seeds... [0.301s] Searching alignments... [155.406s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.275s] Building query seed array... [2.783s] Computing hash join... [5.161s] Masking low complexity seeds... [0.3s] Searching alignments... [115.261s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.986s] Building query seed array... [2.32s] Computing hash join... [5.169s] Masking low complexity seeds... [0.301s] Searching alignments... [122.224s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.727s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.612s] Sorting trace points... [1.791s] Computing alignments... [56.988s] Deallocating buffers... [0.045s] Loading trace points... [0.75s] Sorting trace points... [1.889s] Computing alignments... [54.562s] Deallocating buffers... [0.047s] Loading trace points... [0.072s] Sorting trace points... [1.844s] Computing alignments... [55.98s] Deallocating buffers... [0.039s] Loading trace points... [0.087s] Sorting trace points... [1.896s] Computing alignments... [60.754s] Deallocating buffers... [0.044s] Loading trace points... [0.079s] Sorting trace points... [1.874s] Computing alignments... [57.683s] Deallocating buffers... [0.048s] Loading trace points... [0.044s] Sorting trace points... [1.832s] Computing alignments... [55.92s] Deallocating buffers... [0.048s] Loading trace points... [0.056s] Sorting trace points... [1.87s] Computing alignments... [56.74s] Deallocating buffers... [0.039s] Loading trace points... [0.062s] Sorting trace points... [1.937s] Computing alignments... [59.604s] Deallocating buffers... [0.052s] Loading trace points... [0.068s] Sorting trace points... [1.632s] Computing alignments... [58.605s] Deallocating buffers... [0.045s] Loading trace points... [0.071s] Sorting trace points... [1.631s] Computing alignments... [56.676s] Deallocating buffers... [0.043s] Loading trace points... [0.049s] Sorting trace points... [1.603s] Computing alignments... [58.37s] Deallocating buffers... [0.039s] Loading trace points... [0.056s] Sorting trace points... [1.596s] Computing alignments... [59.233s] Deallocating buffers... [0.036s] Loading trace points... [0.07s] Sorting trace points... [1.532s] Computing alignments... [58.511s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [1.715s] Computing alignments... [58.308s] Deallocating buffers... [0.051s] Loading trace points... [0.064s] Sorting trace points... [1.372s] Computing alignments... [57.022s] Deallocating buffers... [0.043s] Loading trace points... [0s] Sorting trace points... [1.674s] Computing alignments... [58.355s] Deallocating buffers... [0.05s] Loading trace points... [0s] [964.089s] Deallocating reference... [0.079s] Loading reference sequences... [29.632s] Masking reference... [32.518s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.326s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.395s] Building query seed array... [2.556s] Computing hash join... [5.335s] Masking low complexity seeds... [0.313s] Searching alignments... [419.691s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.975s] Building query seed array... [2.969s] Computing hash join... [5.382s] Masking low complexity seeds... [0.318s] Searching alignments... [179.709s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.861s] Building query seed array... [3.027s] Computing hash join... [5.421s] Masking low complexity seeds... [0.322s] Searching alignments... [136.579s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.267s] Building query seed array... [2.571s] Computing hash join... [5.29s] Masking low complexity seeds... [0.326s] Searching alignments... [133.5s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.028s] Building query seed array... [2.412s] Computing hash join... [5.162s] Masking low complexity seeds... [0.3s] Searching alignments... [202.51s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.248s] Building query seed array... [2.656s] Computing hash join... [5.171s] Masking low complexity seeds... [0.309s] Searching alignments... [154.818s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.029s] Building query seed array... [2.706s] Computing hash join... [5.153s] Masking low complexity seeds... [0.3s] Searching alignments... [113.472s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.118s] Building query seed array... [2.308s] Computing hash join... [5.064s] Masking low complexity seeds... [0.301s] Searching alignments... [120.811s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.624s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [9.854s] Sorting trace points... [1.832s] Computing alignments... [47.337s] Deallocating buffers... [0.036s] Loading trace points... [0.055s] Sorting trace points... [1.824s] Computing alignments... [47.326s] Deallocating buffers... [0.037s] Loading trace points... [0.051s] Sorting trace points... [1.883s] Computing alignments... [47.262s] Deallocating buffers... [0.038s] Loading trace points... [0.078s] Sorting trace points... [1.669s] Computing alignments... [51.485s] Deallocating buffers... [0.036s] Loading trace points... [0.046s] Sorting trace points... [1.826s] Computing alignments... [48.878s] Deallocating buffers... [0.033s] Loading trace points... [0.06s] Sorting trace points... [1.804s] Computing alignments... [47.791s] Deallocating buffers... [0.033s] Loading trace points... [0.002s] Sorting trace points... [1.669s] Computing alignments... [47.443s] Deallocating buffers... [0.038s] Loading trace points... [0.067s] Sorting trace points... [1.888s] Computing alignments... [50.115s] Deallocating buffers... [0.039s] Loading trace points... [0.047s] Sorting trace points... [1.855s] Computing alignments... [47.976s] Deallocating buffers... [0.023s] Loading trace points... [0.069s] Sorting trace points... [1.86s] Computing alignments... [48.632s] Deallocating buffers... [0.033s] Loading trace points... [0.079s] Sorting trace points... [1.454s] Computing alignments... [49.875s] Deallocating buffers... [0.026s] Loading trace points... [0.096s] Sorting trace points... [1.929s] Computing alignments... [50.218s] Deallocating buffers... [0.034s] Loading trace points... [0.098s] Sorting trace points... [1.854s] Computing alignments... [48.178s] Deallocating buffers... [0.032s] Loading trace points... [0.065s] Sorting trace points... [1.862s] Computing alignments... [49.295s] Deallocating buffers... [0.033s] Loading trace points... [0.081s] Sorting trace points... [1.607s] Computing alignments... [48.495s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.795s] Computing alignments... [49.301s] Deallocating buffers... [0.034s] Loading trace points... [0s] [819.608s] Deallocating reference... [0.075s] Loading reference sequences... [29.748s] Masking reference... [32.121s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.091s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.724s] Building query seed array... [2.578s] Computing hash join... [5.431s] Masking low complexity seeds... [0.324s] Searching alignments... [417.148s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.323s] Building query seed array... [2.971s] Computing hash join... [5.416s] Masking low complexity seeds... [0.33s] Searching alignments... [175.448s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.359s] Building query seed array... [3.064s] Computing hash join... [5.238s] Masking low complexity seeds... [0.319s] Searching alignments... [137.756s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.883s] Building query seed array... [2.535s] Computing hash join... [5.346s] Masking low complexity seeds... [0.32s] Searching alignments... [136.992s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.888s] Building query seed array... [2.368s] Computing hash join... [5.107s] Masking low complexity seeds... [0.295s] Searching alignments... [190.63s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.057s] Building query seed array... [2.638s] Computing hash join... [5.187s] Masking low complexity seeds... [0.297s] Searching alignments... [163.584s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.049s] Building query seed array... [2.73s] Computing hash join... [5.103s] Masking low complexity seeds... [0.311s] Searching alignments... [114.986s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.888s] Building query seed array... [2.311s] Computing hash join... [5.107s] Masking low complexity seeds... [0.306s] Searching alignments... [119.64s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.661s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.752s] Sorting trace points... [1.856s] Computing alignments... [47.376s] Deallocating buffers... [0.033s] Loading trace points... [0.103s] Sorting trace points... [1.807s] Computing alignments... [47.612s] Deallocating buffers... [0.037s] Loading trace points... [0.059s] Sorting trace points... [1.844s] Computing alignments... [47.443s] Deallocating buffers... [0.033s] Loading trace points... [0.075s] Sorting trace points... [1.4s] Computing alignments... [51.522s] Deallocating buffers... [0.038s] Loading trace points... [0.055s] Sorting trace points... [1.825s] Computing alignments... [49.266s] Deallocating buffers... [0.033s] Loading trace points... [0.094s] Sorting trace points... [1.854s] Computing alignments... [48.068s] Deallocating buffers... [0.038s] Loading trace points... [0.047s] Sorting trace points... [1.324s] Computing alignments... [47.744s] Deallocating buffers... [0.036s] Loading trace points... [0.047s] Sorting trace points... [1.9s] Computing alignments... [50.213s] Deallocating buffers... [0.039s] Loading trace points... [0.071s] Sorting trace points... [1.83s] Computing alignments... [48.033s] Deallocating buffers... [0.038s] Loading trace points... [0.07s] Sorting trace points... [1.785s] Computing alignments... [48.729s] Deallocating buffers... [0.033s] Loading trace points... [0.072s] Sorting trace points... [1.952s] Computing alignments... [49.999s] Deallocating buffers... [0.025s] Loading trace points... [0.083s] Sorting trace points... [1.506s] Computing alignments... [50.87s] Deallocating buffers... [0.039s] Loading trace points... [0.067s] Sorting trace points... [1.893s] Computing alignments... [48.449s] Deallocating buffers... [0.034s] Loading trace points... [0.079s] Sorting trace points... [1.385s] Computing alignments... [49.644s] Deallocating buffers... [0.036s] Loading trace points... [0.092s] Sorting trace points... [1.731s] Computing alignments... [48.642s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.874s] Computing alignments... [49.427s] Deallocating buffers... [0.034s] Loading trace points... [0s] [822.26s] Deallocating reference... [0.076s] Loading reference sequences... [29.531s] Masking reference... [30.861s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.486s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.969s] Building query seed array... [2.571s] Computing hash join... [5.327s] Masking low complexity seeds... [0.313s] Searching alignments... [416.226s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.242s] Building query seed array... [2.926s] Computing hash join... [5.262s] Masking low complexity seeds... [0.323s] Searching alignments... [173.54s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.053s] Building query seed array... [3.084s] Computing hash join... [5.359s] Masking low complexity seeds... [0.321s] Searching alignments... [136.956s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.355s] Building query seed array... [2.551s] Computing hash join... [5.306s] Masking low complexity seeds... [0.327s] Searching alignments... [132.956s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.658s] Building query seed array... [2.289s] Computing hash join... [5.191s] Masking low complexity seeds... [0.296s] Searching alignments... [190.718s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.29s] Building query seed array... [2.655s] Computing hash join... [5.259s] Masking low complexity seeds... [0.304s] Searching alignments... [152.409s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.543s] Building query seed array... [2.738s] Computing hash join... [5.148s] Masking low complexity seeds... [0.302s] Searching alignments... [115.705s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.067s] Building query seed array... [2.313s] Computing hash join... [5.123s] Masking low complexity seeds... [0.293s] Searching alignments... [121.445s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.726s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [9.974s] Sorting trace points... [1.236s] Computing alignments... [46.089s] Deallocating buffers... [0.035s] Loading trace points... [0.051s] Sorting trace points... [1.357s] Computing alignments... [46.562s] Deallocating buffers... [0.036s] Loading trace points... [0.047s] Sorting trace points... [1.323s] Computing alignments... [46.558s] Deallocating buffers... [0.033s] Loading trace points... [0.05s] Sorting trace points... [1.892s] Computing alignments... [50.15s] Deallocating buffers... [0.04s] Loading trace points... [0.057s] Sorting trace points... [1.766s] Computing alignments... [47.786s] Deallocating buffers... [0.029s] Loading trace points... [0.064s] Sorting trace points... [1.505s] Computing alignments... [46.928s] Deallocating buffers... [0.034s] Loading trace points... [0.087s] Sorting trace points... [1.872s] Computing alignments... [46.311s] Deallocating buffers... [0.034s] Loading trace points... [0.047s] Sorting trace points... [1.919s] Computing alignments... [48.889s] Deallocating buffers... [0.034s] Loading trace points... [0.057s] Sorting trace points... [1.796s] Computing alignments... [47.129s] Deallocating buffers... [0.033s] Loading trace points... [0.052s] Sorting trace points... [1.706s] Computing alignments... [47.495s] Deallocating buffers... [0.029s] Loading trace points... [0.066s] Sorting trace points... [1.832s] Computing alignments... [48.57s] Deallocating buffers... [0.04s] Loading trace points... [0.001s] Sorting trace points... [1.982s] Computing alignments... [48.901s] Deallocating buffers... [0.04s] Loading trace points... [0.001s] Sorting trace points... [1.86s] Computing alignments... [47.096s] Deallocating buffers... [0.029s] Loading trace points... [0.085s] Sorting trace points... [1.929s] Computing alignments... [48.066s] Deallocating buffers... [0.034s] Loading trace points... [0.07s] Sorting trace points... [1.778s] Computing alignments... [47.24s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.838s] Computing alignments... [47.953s] Deallocating buffers... [0.033s] Loading trace points... [0s] [800.678s] Deallocating reference... [0.078s] Loading reference sequences... [31.307s] Masking reference... [30.849s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.928s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.279s] Building query seed array... [2.552s] Computing hash join... [5.367s] Masking low complexity seeds... [0.327s] Searching alignments... [419.491s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.799s] Building query seed array... [2.977s] Computing hash join... [5.504s] Masking low complexity seeds... [0.314s] Searching alignments... [182.487s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.44s] Building query seed array... [3.042s] Computing hash join... [5.237s] Masking low complexity seeds... [0.323s] Searching alignments... [140.047s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.93s] Building query seed array... [2.566s] Computing hash join... [5.365s] Masking low complexity seeds... [0.331s] Searching alignments... [136.483s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.015s] Building query seed array... [2.418s] Computing hash join... [5.228s] Masking low complexity seeds... [0.311s] Searching alignments... [197.776s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.364s] Building query seed array... [2.688s] Computing hash join... [5.044s] Masking low complexity seeds... [0.287s] Searching alignments... [156.09s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.52s] Building query seed array... [2.834s] Computing hash join... [5.145s] Masking low complexity seeds... [0.298s] Searching alignments... [115.351s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.26s] Building query seed array... [2.384s] Computing hash join... [5.09s] Masking low complexity seeds... [0.304s] Searching alignments... [124.545s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.711s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [9.819s] Sorting trace points... [1.875s] Computing alignments... [55.053s] Deallocating buffers... [0.041s] Loading trace points... [0.057s] Sorting trace points... [1.766s] Computing alignments... [52.522s] Deallocating buffers... [0.042s] Loading trace points... [0.086s] Sorting trace points... [1.577s] Computing alignments... [54.288s] Deallocating buffers... [0.038s] Loading trace points... [0.085s] Sorting trace points... [1.903s] Computing alignments... [58.751s] Deallocating buffers... [0.041s] Loading trace points... [0.058s] Sorting trace points... [1.841s] Computing alignments... [56.008s] Deallocating buffers... [0.034s] Loading trace points... [0.093s] Sorting trace points... [1.852s] Computing alignments... [53.953s] Deallocating buffers... [0.043s] Loading trace points... [0.059s] Sorting trace points... [1.562s] Computing alignments... [55.556s] Deallocating buffers... [0.04s] Loading trace points... [0.056s] Sorting trace points... [1.447s] Computing alignments... [57.635s] Deallocating buffers... [0.041s] Loading trace points... [0.062s] Sorting trace points... [1.481s] Computing alignments... [56.625s] Deallocating buffers... [0.045s] Loading trace points... [0.08s] Sorting trace points... [1.536s] Computing alignments... [54.719s] Deallocating buffers... [0.033s] Loading trace points... [0.066s] Sorting trace points... [1.757s] Computing alignments... [56.466s] Deallocating buffers... [0.044s] Loading trace points... [0.04s] Sorting trace points... [1.978s] Computing alignments... [57.132s] Deallocating buffers... [0.048s] Loading trace points... [0.043s] Sorting trace points... [1.889s] Computing alignments... [56.042s] Deallocating buffers... [0.043s] Loading trace points... [0.077s] Sorting trace points... [1.882s] Computing alignments... [56.097s] Deallocating buffers... [0.039s] Loading trace points... [0.062s] Sorting trace points... [1.496s] Computing alignments... [54.907s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.838s] Computing alignments... [56.25s] Deallocating buffers... [0.047s] Loading trace points... [0s] [931.193s] Deallocating reference... [0.077s] Loading reference sequences... [29.849s] Masking reference... [30.863s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.423s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.459s] Building query seed array... [2.565s] Computing hash join... [5.434s] Masking low complexity seeds... [0.318s] Searching alignments... [420.822s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.395s] Building query seed array... [2.92s] Computing hash join... [5.331s] Masking low complexity seeds... [0.327s] Searching alignments... [180.194s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.447s] Building query seed array... [3.053s] Computing hash join... [5.327s] Masking low complexity seeds... [0.329s] Searching alignments... [135.857s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.065s] Building query seed array... [2.536s] Computing hash join... [5.233s] Masking low complexity seeds... [0.325s] Searching alignments... [133.829s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.885s] Building query seed array... [2.385s] Computing hash join... [5.089s] Masking low complexity seeds... [0.312s] Searching alignments... [190.509s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.464s] Building query seed array... [2.662s] Computing hash join... [5.146s] Masking low complexity seeds... [0.313s] Searching alignments... [155.774s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.097s] Building query seed array... [2.808s] Computing hash join... [5.185s] Masking low complexity seeds... [0.299s] Searching alignments... [114.886s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.705s] Building query seed array... [2.281s] Computing hash join... [5.213s] Masking low complexity seeds... [0.309s] Searching alignments... [116.237s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.761s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.781s] Sorting trace points... [1.85s] Computing alignments... [44.974s] Deallocating buffers... [0.023s] Loading trace points... [0.089s] Sorting trace points... [1.799s] Computing alignments... [45.261s] Deallocating buffers... [0.032s] Loading trace points... [0.07s] Sorting trace points... [1.739s] Computing alignments... [45.78s] Deallocating buffers... [0.033s] Loading trace points... [0.071s] Sorting trace points... [1.469s] Computing alignments... [49.207s] Deallocating buffers... [0.037s] Loading trace points... [0.084s] Sorting trace points... [1.76s] Computing alignments... [46.735s] Deallocating buffers... [0.024s] Loading trace points... [0.072s] Sorting trace points... [1.819s] Computing alignments... [45.778s] Deallocating buffers... [0.035s] Loading trace points... [0.002s] Sorting trace points... [1.755s] Computing alignments... [45.375s] Deallocating buffers... [0.033s] Loading trace points... [0.06s] Sorting trace points... [1.807s] Computing alignments... [47.966s] Deallocating buffers... [0.035s] Loading trace points... [0.057s] Sorting trace points... [1.377s] Computing alignments... [46.269s] Deallocating buffers... [0.033s] Loading trace points... [0.059s] Sorting trace points... [1.87s] Computing alignments... [46.417s] Deallocating buffers... [0.033s] Loading trace points... [0.076s] Sorting trace points... [1.469s] Computing alignments... [47.324s] Deallocating buffers... [0.026s] Loading trace points... [0.081s] Sorting trace points... [1.889s] Computing alignments... [48.14s] Deallocating buffers... [0.034s] Loading trace points... [0.05s] Sorting trace points... [1.605s] Computing alignments... [46.214s] Deallocating buffers... [0.038s] Loading trace points... [0.064s] Sorting trace points... [1.891s] Computing alignments... [46.824s] Deallocating buffers... [0.038s] Loading trace points... [0.579s] Sorting trace points... [1.79s] Computing alignments... [46.422s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.856s] Computing alignments... [46.927s] Deallocating buffers... [0.034s] Loading trace points... [0s] [785.193s] Deallocating reference... [0.073s] Loading reference sequences... [31.269s] Masking reference... [31.129s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.707s] Allocating buffers... [0.001s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.319s] Building query seed array... [2.584s] Computing hash join... [5.313s] Masking low complexity seeds... [0.321s] Searching alignments... [417.857s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.41s] Building query seed array... [2.986s] Computing hash join... [5.383s] Masking low complexity seeds... [0.319s] Searching alignments... [177.578s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.393s] Building query seed array... [3.022s] Computing hash join... [5.298s] Masking low complexity seeds... [0.323s] Searching alignments... [135.82s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.215s] Building query seed array... [2.537s] Computing hash join... [5.378s] Masking low complexity seeds... [0.319s] Searching alignments... [136.856s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.323s] Building query seed array... [2.382s] Computing hash join... [5.236s] Masking low complexity seeds... [0.312s] Searching alignments... [195.253s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.295s] Building query seed array... [2.648s] Computing hash join... [5.053s] Masking low complexity seeds... [0.306s] Searching alignments... [154.163s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.466s] Building query seed array... [2.786s] Computing hash join... [5.227s] Masking low complexity seeds... [0.302s] Searching alignments... [117.581s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.675s] Building query seed array... [2.385s] Computing hash join... [5.088s] Masking low complexity seeds... [0.307s] Searching alignments... [123.13s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.654s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [9.873s] Sorting trace points... [1.888s] Computing alignments... [55.335s] Deallocating buffers... [0.032s] Loading trace points... [0.061s] Sorting trace points... [1.611s] Computing alignments... [54.219s] Deallocating buffers... [0.037s] Loading trace points... [0.073s] Sorting trace points... [1.769s] Computing alignments... [55.252s] Deallocating buffers... [0.033s] Loading trace points... [0.067s] Sorting trace points... [2.011s] Computing alignments... [60.29s] Deallocating buffers... [0.035s] Loading trace points... [0.057s] Sorting trace points... [1.564s] Computing alignments... [57.431s] Deallocating buffers... [0.037s] Loading trace points... [0.001s] Sorting trace points... [1.92s] Computing alignments... [54.922s] Deallocating buffers... [0.038s] Loading trace points... [0.056s] Sorting trace points... [1.779s] Computing alignments... [56.512s] Deallocating buffers... [0.043s] Loading trace points... [0.071s] Sorting trace points... [1.967s] Computing alignments... [58.549s] Deallocating buffers... [0.034s] Loading trace points... [0.075s] Sorting trace points... [1.58s] Computing alignments... [57.154s] Deallocating buffers... [0.034s] Loading trace points... [0.101s] Sorting trace points... [1.467s] Computing alignments... [56.234s] Deallocating buffers... [0.036s] Loading trace points... [0.043s] Sorting trace points... [1.843s] Computing alignments... [57.344s] Deallocating buffers... [0.04s] Loading trace points... [0.072s] Sorting trace points... [1.969s] Computing alignments... [58.465s] Deallocating buffers... [0.035s] Loading trace points... [0.132s] Sorting trace points... [1.535s] Computing alignments... [57.577s] Deallocating buffers... [0.029s] Loading trace points... [0.078s] Sorting trace points... [1.872s] Computing alignments... [57.393s] Deallocating buffers... [0.034s] Loading trace points... [0.001s] Sorting trace points... [1.611s] Computing alignments... [56.27s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.473s] Computing alignments... [57.699s] Deallocating buffers... [0.036s] Loading trace points... [0s] [949.975s] Deallocating reference... [0.074s] Loading reference sequences... [29.552s] Masking reference... [30.856s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.746s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.395s] Building query seed array... [2.641s] Computing hash join... [5.299s] Masking low complexity seeds... [0.316s] Searching alignments... [420.002s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.181s] Building query seed array... [2.788s] Computing hash join... [5.45s] Masking low complexity seeds... [0.318s] Searching alignments... [176.055s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.446s] Building query seed array... [3.039s] Computing hash join... [5.228s] Masking low complexity seeds... [0.325s] Searching alignments... [137.03s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [2.569s] Computing hash join... [5.359s] Masking low complexity seeds... [0.322s] Searching alignments... [135.354s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.025s] Building query seed array... [2.354s] Computing hash join... [5.085s] Masking low complexity seeds... [0.302s] Searching alignments... [194.724s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.987s] Building query seed array... [2.712s] Computing hash join... [5.034s] Masking low complexity seeds... [0.298s] Searching alignments... [158.176s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.187s] Building query seed array... [2.815s] Computing hash join... [5.142s] Masking low complexity seeds... [0.309s] Searching alignments... [114.582s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.211s] Building query seed array... [2.38s] Computing hash join... [5.053s] Masking low complexity seeds... [0.296s] Searching alignments... [120.12s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.754s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.884s] Sorting trace points... [1.959s] Computing alignments... [55.812s] Deallocating buffers... [0.038s] Loading trace points... [0.077s] Sorting trace points... [1.669s] Computing alignments... [53.037s] Deallocating buffers... [0.044s] Loading trace points... [0.079s] Sorting trace points... [1.911s] Computing alignments... [55.335s] Deallocating buffers... [0.043s] Loading trace points... [0.049s] Sorting trace points... [1.951s] Computing alignments... [59.618s] Deallocating buffers... [0.045s] Loading trace points... [0.001s] Sorting trace points... [1.852s] Computing alignments... [56.819s] Deallocating buffers... [0.04s] Loading trace points... [0.065s] Sorting trace points... [1.398s] Computing alignments... [54.583s] Deallocating buffers... [0.039s] Loading trace points... [0.071s] Sorting trace points... [1.377s] Computing alignments... [55.947s] Deallocating buffers... [0.042s] Loading trace points... [0.083s] Sorting trace points... [1.741s] Computing alignments... [58.176s] Deallocating buffers... [0.042s] Loading trace points... [0.102s] Sorting trace points... [1.846s] Computing alignments... [57.258s] Deallocating buffers... [0.046s] Loading trace points... [0.058s] Sorting trace points... [1.755s] Computing alignments... [55.891s] Deallocating buffers... [0.046s] Loading trace points... [0.082s] Sorting trace points... [1.421s] Computing alignments... [56.87s] Deallocating buffers... [0.045s] Loading trace points... [0.077s] Sorting trace points... [1.447s] Computing alignments... [57.845s] Deallocating buffers... [0.046s] Loading trace points... [0.078s] Sorting trace points... [1.862s] Computing alignments... [57.135s] Deallocating buffers... [0.046s] Loading trace points... [0.061s] Sorting trace points... [1.697s] Computing alignments... [56.841s] Deallocating buffers... [0.035s] Loading trace points... [0.065s] Sorting trace points... [1.462s] Computing alignments... [55.834s] Deallocating buffers... [0.046s] Loading trace points... [0s] Sorting trace points... [1.787s] Computing alignments... [57.298s] Deallocating buffers... [0.047s] Loading trace points... [0s] [942.997s] Deallocating reference... [0.078s] Loading reference sequences... [29.779s] Masking reference... [31.252s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.161s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.019s] Building query seed array... [2.516s] Computing hash join... [5.385s] Masking low complexity seeds... [0.325s] Searching alignments... [416.836s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.692s] Building query seed array... [2.948s] Computing hash join... [5.36s] Masking low complexity seeds... [0.319s] Searching alignments... [177.447s] Deallocating memory... [0.003s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.411s] Building query seed array... [3.068s] Computing hash join... [5.36s] Masking low complexity seeds... [0.32s] Searching alignments... [138.846s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.048s] Building query seed array... [2.514s] Computing hash join... [5.274s] Masking low complexity seeds... [0.323s] Searching alignments... [134.515s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.881s] Building query seed array... [2.36s] Computing hash join... [5.249s] Masking low complexity seeds... [0.306s] Searching alignments... [191.053s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.664s] Building query seed array... [2.679s] Computing hash join... [5.158s] Masking low complexity seeds... [0.306s] Searching alignments... [155.485s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.402s] Building query seed array... [2.844s] Computing hash join... [5.157s] Masking low complexity seeds... [0.312s] Searching alignments... [113.123s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.861s] Building query seed array... [2.368s] Computing hash join... [5.139s] Masking low complexity seeds... [0.313s] Searching alignments... [120.733s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.727s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.929s] Sorting trace points... [1.849s] Computing alignments... [53.257s] Deallocating buffers... [0.034s] Loading trace points... [0.089s] Sorting trace points... [1.636s] Computing alignments... [51.594s] Deallocating buffers... [0.034s] Loading trace points... [0.046s] Sorting trace points... [1.764s] Computing alignments... [53.471s] Deallocating buffers... [0.025s] Loading trace points... [0.067s] Sorting trace points... [1.612s] Computing alignments... [57.889s] Deallocating buffers... [0.039s] Loading trace points... [0.076s] Sorting trace points... [1.834s] Computing alignments... [54.964s] Deallocating buffers... [0.039s] Loading trace points... [0.072s] Sorting trace points... [1.863s] Computing alignments... [52.881s] Deallocating buffers... [0.032s] Loading trace points... [0.054s] Sorting trace points... [1.611s] Computing alignments... [53.732s] Deallocating buffers... [0.034s] Loading trace points... [0.062s] Sorting trace points... [1.847s] Computing alignments... [56.263s] Deallocating buffers... [0.034s] Loading trace points... [0.051s] Sorting trace points... [1.832s] Computing alignments... [54.864s] Deallocating buffers... [0.033s] Loading trace points... [0.056s] Sorting trace points... [1.864s] Computing alignments... [53.747s] Deallocating buffers... [0.038s] Loading trace points... [0.09s] Sorting trace points... [1.937s] Computing alignments... [55.045s] Deallocating buffers... [0.04s] Loading trace points... [0.037s] Sorting trace points... [2.019s] Computing alignments... [55.966s] Deallocating buffers... [0.03s] Loading trace points... [1.264s] Sorting trace points... [1.778s] Computing alignments... [54.944s] Deallocating buffers... [0.024s] Loading trace points... [0.089s] Sorting trace points... [1.517s] Computing alignments... [55.031s] Deallocating buffers... [0.037s] Loading trace points... [0.074s] Sorting trace points... [1.803s] Computing alignments... [53.612s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.823s] Computing alignments... [55.323s] Deallocating buffers... [0.033s] Loading trace points... [0s] [913.876s] Deallocating reference... [0.07s] Loading reference sequences... [25.208s] Masking reference... [25.285s] Initializing dictionary... [0.064s] Initializing temporary storage... [0.009s] Building reference histograms... [26.044s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.441s] Building query seed array... [2.614s] Computing hash join... [4.462s] Masking low complexity seeds... [0.304s] Searching alignments... [333.091s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.116s] Building query seed array... [2.844s] Computing hash join... [4.477s] Masking low complexity seeds... [0.299s] Searching alignments... [145.099s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.715s] Building query seed array... [3.028s] Computing hash join... [4.53s] Masking low complexity seeds... [0.307s] Searching alignments... [112.1s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.226s] Building query seed array... [2.568s] Computing hash join... [4.491s] Masking low complexity seeds... [0.305s] Searching alignments... [110.177s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.264s] Building query seed array... [2.37s] Computing hash join... [4.273s] Masking low complexity seeds... [0.298s] Searching alignments... [155.058s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.115s] Building query seed array... [2.74s] Computing hash join... [4.334s] Masking low complexity seeds... [0.29s] Searching alignments... [126.697s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.277s] Building query seed array... [2.837s] Computing hash join... [4.302s] Masking low complexity seeds... [0.286s] Searching alignments... [92.629s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.048s] Building query seed array... [2.366s] Computing hash join... [4.319s] Masking low complexity seeds... [0.299s] Searching alignments... [96.22s] Deallocating memory... [0s] Deallocating buffers... [0.121s] Clearing query masking... [1.674s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.887s] Sorting trace points... [1.509s] Computing alignments... [41.451s] Deallocating buffers... [0.032s] Loading trace points... [0.001s] Sorting trace points... [1.118s] Computing alignments... [40.347s] Deallocating buffers... [0.022s] Loading trace points... [0.058s] Sorting trace points... [1.501s] Computing alignments... [41.328s] Deallocating buffers... [0.026s] Loading trace points... [0.072s] Sorting trace points... [1.572s] Computing alignments... [44.389s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.132s] Computing alignments... [42.499s] Deallocating buffers... [0.022s] Loading trace points... [0.059s] Sorting trace points... [1.497s] Computing alignments... [41.065s] Deallocating buffers... [0.031s] Loading trace points... [0.075s] Sorting trace points... [1.089s] Computing alignments... [41.419s] Deallocating buffers... [0.029s] Loading trace points... [0.065s] Sorting trace points... [1.145s] Computing alignments... [43.38s] Deallocating buffers... [0.031s] Loading trace points... [0.052s] Sorting trace points... [1.156s] Computing alignments... [42.234s] Deallocating buffers... [0.03s] Loading trace points... [0.062s] Sorting trace points... [1.527s] Computing alignments... [41.839s] Deallocating buffers... [0.021s] Loading trace points... [0.075s] Sorting trace points... [1.363s] Computing alignments... [42.909s] Deallocating buffers... [0.032s] Loading trace points... [0.916s] Sorting trace points... [1.496s] Computing alignments... [43.412s] Deallocating buffers... [0.027s] Loading trace points... [0.069s] Sorting trace points... [1.236s] Computing alignments... [41.885s] Deallocating buffers... [0.03s] Loading trace points... [0.048s] Sorting trace points... [1.248s] Computing alignments... [42.168s] Deallocating buffers... [0.031s] Loading trace points... [0.067s] Sorting trace points... [1.161s] Computing alignments... [41.521s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.5s] Computing alignments... [42.732s] Deallocating buffers... [0.027s] Loading trace points... [0s] [706.953s] Deallocating reference... [0.061s] Loading reference sequences... [0.074s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2572.65s] [2572.68s] Deallocating queries... [0.07s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.446s] [4.442s] Closing the database... [0s] Cleaning up... [0s] Total time = 38493.3s Reported 3051931451 pairwise alignments, 3051931451 HSPs. 3547598 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R1.fastq.gz complete: CH07-04.trimmed.R1.blastx.meganized.daa Now MEGANizing CH07-04.trimmed.R1.blastx.meganized.daa MoTTY X11 proxy: Authorisation not recognised In case you are trying to start a graphical application with "sudo", read this article in order to avoid this issue: https://blog.mobatek.net/post/how-to-keep-X11-display-after-su-or-sudo/ Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-04.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (229.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,369.4s) Total reads: 3,547,598 With hits: 3,547,598 Alignments: 2,376,536,610 Assig. Taxonomy: 2,339,634 Assig. SEED: 98,393 Assig. EGGNOG: 33,593 Assig. GTDB: 232,777 Assig. EC: 365,990 Assig. INTERPRO2GO: 959,455 MinSupport set to: 1773 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 6,500 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.1s) Min-supp. changes: 5,007 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7.4s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 204 Class. SEED: 511 Class. EGGNOG: 1,805 Class. GTDB: 67 Class. EC: 2,568 Class. INTERPRO2GO: 8,907 Total time: 5,628s Peak memory: 34.5 of 195.3G MEGANization of CH07-04.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R2.fastq.gz... 8d33239af41e1b99abea99bc637cfeda /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.322s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.744s] Opening the output file... [1.144s] Loading query sequences... [105.556s] Masking queries... [31.977s] Algorithm: Double-indexed Building query histograms... [24.472s] Loading reference sequences... [29.176s] Masking reference... [30.843s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.01s] Building reference histograms... [33.111s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.096s] Building query seed array... [2.59s] Computing hash join... [5.397s] Masking low complexity seeds... [0.315s] Searching alignments... [439.069s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.038s] Building query seed array... [2.982s] Computing hash join... [5.527s] Masking low complexity seeds... [0.319s] Searching alignments... [181.731s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.699s] Building query seed array... [3.086s] Computing hash join... [5.362s] Masking low complexity seeds... [0.316s] Searching alignments... [139.925s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.007s] Building query seed array... [2.517s] Computing hash join... [5.401s] Masking low complexity seeds... [0.32s] Searching alignments... [136.993s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.198s] Building query seed array... [2.279s] Computing hash join... [5.104s] Masking low complexity seeds... [0.297s] Searching alignments... [206.536s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.381s] Building query seed array... [2.689s] Computing hash join... [5.152s] Masking low complexity seeds... [0.313s] Searching alignments... [158.134s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.225s] Building query seed array... [2.743s] Computing hash join... [5.197s] Masking low complexity seeds... [0.297s] Searching alignments... [119.501s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.449s] Building query seed array... [2.36s] Computing hash join... [5.209s] Masking low complexity seeds... [0.308s] Searching alignments... [124.787s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.742s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.094s] Sorting trace points... [1.894s] Computing alignments... [49.582s] Deallocating buffers... [0.033s] Loading trace points... [0.069s] Sorting trace points... [1.882s] Computing alignments... [49.767s] Deallocating buffers... [0.033s] Loading trace points... [0.044s] Sorting trace points... [1.351s] Computing alignments... [49.653s] Deallocating buffers... [0.036s] Loading trace points... [0.085s] Sorting trace points... [1.78s] Computing alignments... [52.591s] Deallocating buffers... [0.026s] Loading trace points... [0.067s] Sorting trace points... [1.958s] Computing alignments... [51.455s] Deallocating buffers... [0.039s] Loading trace points... [0.114s] Sorting trace points... [1.802s] Computing alignments... [50.46s] Deallocating buffers... [0.032s] Loading trace points... [0.061s] Sorting trace points... [1.739s] Computing alignments... [49.92s] Deallocating buffers... [0.033s] Loading trace points... [0.068s] Sorting trace points... [1.502s] Computing alignments... [51.26s] Deallocating buffers... [0.038s] Loading trace points... [0.054s] Sorting trace points... [1.862s] Computing alignments... [50.702s] Deallocating buffers... [0.034s] Loading trace points... [0.1s] Sorting trace points... [1.91s] Computing alignments... [50.698s] Deallocating buffers... [0.036s] Loading trace points... [0.057s] Sorting trace points... [1.833s] Computing alignments... [50.534s] Deallocating buffers... [0.023s] Loading trace points... [0.041s] Sorting trace points... [1.789s] Computing alignments... [50.439s] Deallocating buffers... [0.039s] Loading trace points... [0.066s] Sorting trace points... [1.884s] Computing alignments... [50.011s] Deallocating buffers... [0.039s] Loading trace points... [0.089s] Sorting trace points... [1.964s] Computing alignments... [50.276s] Deallocating buffers... [0.039s] Loading trace points... [0.081s] Sorting trace points... [1.857s] Computing alignments... [48.753s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.411s] Computing alignments... [49.102s] Deallocating buffers... [0.035s] Loading trace points... [0s] [845.357s] Deallocating reference... [0.072s] Loading reference sequences... [29.549s] Masking reference... [30.946s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.543s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.429s] Building query seed array... [2.595s] Computing hash join... [5.374s] Masking low complexity seeds... [0.316s] Searching alignments... [426.83s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.222s] Building query seed array... [2.864s] Computing hash join... [5.389s] Masking low complexity seeds... [0.317s] Searching alignments... [182.237s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.386s] Building query seed array... [3.097s] Computing hash join... [5.392s] Masking low complexity seeds... [0.318s] Searching alignments... [145.933s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.016s] Building query seed array... [2.568s] Computing hash join... [5.446s] Masking low complexity seeds... [0.311s] Searching alignments... [137.573s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.173s] Building query seed array... [2.32s] Computing hash join... [5.172s] Masking low complexity seeds... [0.299s] Searching alignments... [196.998s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.159s] Building query seed array... [2.666s] Computing hash join... [5.058s] Masking low complexity seeds... [0.295s] Searching alignments... [162.467s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.331s] Building query seed array... [2.743s] Computing hash join... [5.098s] Masking low complexity seeds... [0.302s] Searching alignments... [117.787s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.897s] Building query seed array... [2.33s] Computing hash join... [5.007s] Masking low complexity seeds... [0.301s] Searching alignments... [122.491s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.729s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.099s] Sorting trace points... [1.979s] Computing alignments... [53.312s] Deallocating buffers... [0.035s] Loading trace points... [0.063s] Sorting trace points... [1.827s] Computing alignments... [52.658s] Deallocating buffers... [0.033s] Loading trace points... [0.075s] Sorting trace points... [1.827s] Computing alignments... [53.375s] Deallocating buffers... [0.037s] Loading trace points... [0.094s] Sorting trace points... [1.75s] Computing alignments... [56.61s] Deallocating buffers... [0.029s] Loading trace points... [0.067s] Sorting trace points... [1.95s] Computing alignments... [54.303s] Deallocating buffers... [0.037s] Loading trace points... [0.068s] Sorting trace points... [1.499s] Computing alignments... [54.157s] Deallocating buffers... [0.036s] Loading trace points... [0.075s] Sorting trace points... [1.874s] Computing alignments... [53.688s] Deallocating buffers... [0.031s] Loading trace points... [1.594s] Sorting trace points... [1.795s] Computing alignments... [54.099s] Deallocating buffers... [0.034s] Loading trace points... [0.073s] Sorting trace points... [1.432s] Computing alignments... [54.856s] Deallocating buffers... [0.037s] Loading trace points... [0.086s] Sorting trace points... [1.846s] Computing alignments... [54.989s] Deallocating buffers... [0.044s] Loading trace points... [0.063s] Sorting trace points... [1.846s] Computing alignments... [53.24s] Deallocating buffers... [0.029s] Loading trace points... [0.079s] Sorting trace points... [1.861s] Computing alignments... [54.442s] Deallocating buffers... [0.039s] Loading trace points... [0.053s] Sorting trace points... [1.893s] Computing alignments... [52.895s] Deallocating buffers... [0.033s] Loading trace points... [0.057s] Sorting trace points... [1.419s] Computing alignments... [53.411s] Deallocating buffers... [0.041s] Loading trace points... [0.048s] Sorting trace points... [1.844s] Computing alignments... [52.184s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.714s] Computing alignments... [52.295s] Deallocating buffers... [0.033s] Loading trace points... [0s] [902.153s] Deallocating reference... [0.074s] Loading reference sequences... [29.515s] Masking reference... [32.066s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.122s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.015s] Building query seed array... [2.487s] Computing hash join... [5.291s] Masking low complexity seeds... [0.318s] Searching alignments... [435.318s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.567s] Building query seed array... [2.883s] Computing hash join... [5.315s] Masking low complexity seeds... [0.323s] Searching alignments... [181.165s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.991s] Building query seed array... [3.047s] Computing hash join... [5.389s] Masking low complexity seeds... [0.321s] Searching alignments... [141.707s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.969s] Building query seed array... [2.576s] Computing hash join... [5.317s] Masking low complexity seeds... [0.314s] Searching alignments... [138.811s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.033s] Building query seed array... [2.317s] Computing hash join... [5.054s] Masking low complexity seeds... [0.295s] Searching alignments... [208.604s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.445s] Building query seed array... [2.663s] Computing hash join... [5.12s] Masking low complexity seeds... [0.308s] Searching alignments... [158.389s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.326s] Building query seed array... [2.774s] Computing hash join... [5.151s] Masking low complexity seeds... [0.305s] Searching alignments... [117.558s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.792s] Building query seed array... [2.342s] Computing hash join... [5.111s] Masking low complexity seeds... [0.296s] Searching alignments... [124.433s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.617s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.102s] Sorting trace points... [1.922s] Computing alignments... [51.92s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.841s] Computing alignments... [52.297s] Deallocating buffers... [0.028s] Loading trace points... [0.06s] Sorting trace points... [1.865s] Computing alignments... [52.343s] Deallocating buffers... [0.039s] Loading trace points... [0.085s] Sorting trace points... [1.496s] Computing alignments... [55.555s] Deallocating buffers... [0.03s] Loading trace points... [0.085s] Sorting trace points... [1.961s] Computing alignments... [52.81s] Deallocating buffers... [0.034s] Loading trace points... [0.052s] Sorting trace points... [1.592s] Computing alignments... [52.904s] Deallocating buffers... [0.027s] Loading trace points... [0.059s] Sorting trace points... [1.838s] Computing alignments... [52.26s] Deallocating buffers... [0.023s] Loading trace points... [0.075s] Sorting trace points... [1.988s] Computing alignments... [52.921s] Deallocating buffers... [0.025s] Loading trace points... [0.068s] Sorting trace points... [1.853s] Computing alignments... [53.835s] Deallocating buffers... [0.039s] Loading trace points... [0.038s] Sorting trace points... [1.433s] Computing alignments... [53.662s] Deallocating buffers... [0.027s] Loading trace points... [0.082s] Sorting trace points... [1.418s] Computing alignments... [52.308s] Deallocating buffers... [0.037s] Loading trace points... [0.072s] Sorting trace points... [1.868s] Computing alignments... [52.532s] Deallocating buffers... [0.034s] Loading trace points... [0.001s] Sorting trace points... [1.879s] Computing alignments... [51.814s] Deallocating buffers... [0.033s] Loading trace points... [0.086s] Sorting trace points... [1.825s] Computing alignments... [52.148s] Deallocating buffers... [0.033s] Loading trace points... [0.074s] Sorting trace points... [1.911s] Computing alignments... [50.777s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.782s] Computing alignments... [51.741s] Deallocating buffers... [0.035s] Loading trace points... [0s] [881.864s] Deallocating reference... [0.079s] Loading reference sequences... [29.427s] Masking reference... [32.224s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.869s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.215s] Building query seed array... [2.643s] Computing hash join... [5.35s] Masking low complexity seeds... [0.317s] Searching alignments... [439.991s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.64s] Building query seed array... [2.945s] Computing hash join... [5.354s] Masking low complexity seeds... [0.319s] Searching alignments... [182.977s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.183s] Building query seed array... [3.025s] Computing hash join... [5.346s] Masking low complexity seeds... [0.313s] Searching alignments... [142.992s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.072s] Building query seed array... [2.518s] Computing hash join... [5.266s] Masking low complexity seeds... [0.309s] Searching alignments... [136.2s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.634s] Building query seed array... [2.36s] Computing hash join... [5.186s] Masking low complexity seeds... [0.294s] Searching alignments... [199.641s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.091s] Building query seed array... [2.59s] Computing hash join... [5.022s] Masking low complexity seeds... [0.294s] Searching alignments... [159.248s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.13s] Building query seed array... [2.794s] Computing hash join... [5.148s] Masking low complexity seeds... [0.304s] Searching alignments... [119.952s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.737s] Building query seed array... [2.383s] Computing hash join... [5.221s] Masking low complexity seeds... [0.298s] Searching alignments... [126.784s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.686s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.151s] Sorting trace points... [1.987s] Computing alignments... [54.352s] Deallocating buffers... [0.033s] Loading trace points... [0.071s] Sorting trace points... [1.878s] Computing alignments... [54.023s] Deallocating buffers... [0.048s] Loading trace points... [0.074s] Sorting trace points... [1.896s] Computing alignments... [55.064s] Deallocating buffers... [0.037s] Loading trace points... [0.068s] Sorting trace points... [1.532s] Computing alignments... [58.486s] Deallocating buffers... [0.04s] Loading trace points... [0.048s] Sorting trace points... [1.752s] Computing alignments... [55.175s] Deallocating buffers... [0.039s] Loading trace points... [0.074s] Sorting trace points... [1.693s] Computing alignments... [55.723s] Deallocating buffers... [0.038s] Loading trace points... [0.049s] Sorting trace points... [1.804s] Computing alignments... [54.814s] Deallocating buffers... [0.048s] Loading trace points... [0.072s] Sorting trace points... [1.512s] Computing alignments... [55.002s] Deallocating buffers... [0.038s] Loading trace points... [0.389s] Sorting trace points... [1.799s] Computing alignments... [56.168s] Deallocating buffers... [0.035s] Loading trace points... [0.078s] Sorting trace points... [1.933s] Computing alignments... [56.699s] Deallocating buffers... [0.034s] Loading trace points... [0.06s] Sorting trace points... [1.877s] Computing alignments... [54.998s] Deallocating buffers... [0.037s] Loading trace points... [0.093s] Sorting trace points... [1.944s] Computing alignments... [55.316s] Deallocating buffers... [0.039s] Loading trace points... [0.072s] Sorting trace points... [1.946s] Computing alignments... [54.751s] Deallocating buffers... [0.035s] Loading trace points... [0.062s] Sorting trace points... [1.47s] Computing alignments... [54.639s] Deallocating buffers... [0.038s] Loading trace points... [0.061s] Sorting trace points... [1.396s] Computing alignments... [53.568s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.652s] Computing alignments... [53.701s] Deallocating buffers... [0.034s] Loading trace points... [0s] [922.741s] Deallocating reference... [0.075s] Loading reference sequences... [240.616s] Masking reference... [30.848s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.907s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.993s] Building query seed array... [2.551s] Computing hash join... [5.369s] Masking low complexity seeds... [0.325s] Searching alignments... [434.749s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.463s] Building query seed array... [2.909s] Computing hash join... [5.266s] Masking low complexity seeds... [0.317s] Searching alignments... [183.364s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.018s] Building query seed array... [3.115s] Computing hash join... [5.295s] Masking low complexity seeds... [0.316s] Searching alignments... [139.031s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.735s] Building query seed array... [2.519s] Computing hash join... [5.355s] Masking low complexity seeds... [0.317s] Searching alignments... [138.017s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.89s] Building query seed array... [2.342s] Computing hash join... [5.086s] Masking low complexity seeds... [0.293s] Searching alignments... [206.137s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.38s] Building query seed array... [2.682s] Computing hash join... [5.166s] Masking low complexity seeds... [0.293s] Searching alignments... [160.337s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.949s] Building query seed array... [2.83s] Computing hash join... [5.063s] Masking low complexity seeds... [0.303s] Searching alignments... [117.949s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.915s] Building query seed array... [2.361s] Computing hash join... [5.15s] Masking low complexity seeds... [0.301s] Searching alignments... [124.483s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [1.667s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.149s] Sorting trace points... [1.975s] Computing alignments... [57.34s] Deallocating buffers... [0.047s] Loading trace points... [0.058s] Sorting trace points... [1.898s] Computing alignments... [57.575s] Deallocating buffers... [0.042s] Loading trace points... [0.068s] Sorting trace points... [1.858s] Computing alignments... [58.405s] Deallocating buffers... [0.046s] Loading trace points... [0.071s] Sorting trace points... [1.45s] Computing alignments... [62.06s] Deallocating buffers... [0.047s] Loading trace points... [0.076s] Sorting trace points... [2.021s] Computing alignments... [57.987s] Deallocating buffers... [0.047s] Loading trace points... [0.066s] Sorting trace points... [1.809s] Computing alignments... [59.005s] Deallocating buffers... [0.041s] Loading trace points... [0.002s] Sorting trace points... [1.69s] Computing alignments... [58.316s] Deallocating buffers... [0.054s] Loading trace points... [0.051s] Sorting trace points... [1.741s] Computing alignments... [58.507s] Deallocating buffers... [0.04s] Loading trace points... [0.071s] Sorting trace points... [1.943s] Computing alignments... [59.24s] Deallocating buffers... [0.053s] Loading trace points... [0.06s] Sorting trace points... [1.615s] Computing alignments... [59.533s] Deallocating buffers... [0.041s] Loading trace points... [0.043s] Sorting trace points... [1.43s] Computing alignments... [57.92s] Deallocating buffers... [0.053s] Loading trace points... [0.091s] Sorting trace points... [1.432s] Computing alignments... [58.306s] Deallocating buffers... [0.052s] Loading trace points... [0.071s] Sorting trace points... [1.653s] Computing alignments... [57.869s] Deallocating buffers... [0.056s] Loading trace points... [0.055s] Sorting trace points... [1.498s] Computing alignments... [57.455s] Deallocating buffers... [0.043s] Loading trace points... [0.058s] Sorting trace points... [1.482s] Computing alignments... [56.112s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [1.827s] Computing alignments... [57.273s] Deallocating buffers... [0.045s] Loading trace points... [0s] [972.075s] Deallocating reference... [0.072s] Loading reference sequences... [250.229s] Masking reference... [30.852s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [34.208s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.244s] Building query seed array... [2.659s] Computing hash join... [5.407s] Masking low complexity seeds... [0.319s] Searching alignments... [427.295s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.917s] Building query seed array... [2.942s] Computing hash join... [5.328s] Masking low complexity seeds... [0.321s] Searching alignments... [178.884s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.63s] Building query seed array... [3.114s] Computing hash join... [5.37s] Masking low complexity seeds... [0.331s] Searching alignments... [141.553s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.135s] Building query seed array... [2.531s] Computing hash join... [5.265s] Masking low complexity seeds... [0.32s] Searching alignments... [134.947s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.911s] Building query seed array... [2.404s] Computing hash join... [5.17s] Masking low complexity seeds... [0.303s] Searching alignments... [204.162s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.153s] Building query seed array... [2.693s] Computing hash join... [5.187s] Masking low complexity seeds... [0.296s] Searching alignments... [160.967s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.43s] Building query seed array... [2.812s] Computing hash join... [5.194s] Masking low complexity seeds... [0.292s] Searching alignments... [117.741s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.124s] Building query seed array... [2.414s] Computing hash join... [5.105s] Masking low complexity seeds... [0.304s] Searching alignments... [125.008s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.712s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.789s] Sorting trace points... [1.902s] Computing alignments... [48.14s] Deallocating buffers... [0.039s] Loading trace points... [0.057s] Sorting trace points... [1.796s] Computing alignments... [48.994s] Deallocating buffers... [0.029s] Loading trace points... [0.066s] Sorting trace points... [1.369s] Computing alignments... [48.018s] Deallocating buffers... [0.036s] Loading trace points... [0.579s] Sorting trace points... [1.745s] Computing alignments... [51.389s] Deallocating buffers... [0.041s] Loading trace points... [0.066s] Sorting trace points... [1.891s] Computing alignments... [50.216s] Deallocating buffers... [0.039s] Loading trace points... [0.062s] Sorting trace points... [1.818s] Computing alignments... [49.065s] Deallocating buffers... [0.023s] Loading trace points... [0.072s] Sorting trace points... [1.789s] Computing alignments... [48.779s] Deallocating buffers... [0.038s] Loading trace points... [0.045s] Sorting trace points... [1.464s] Computing alignments... [50.106s] Deallocating buffers... [0.038s] Loading trace points... [0.063s] Sorting trace points... [1.447s] Computing alignments... [49.515s] Deallocating buffers... [0.037s] Loading trace points... [0.061s] Sorting trace points... [1.889s] Computing alignments... [49.811s] Deallocating buffers... [0.034s] Loading trace points... [0.067s] Sorting trace points... [1.876s] Computing alignments... [49.737s] Deallocating buffers... [0.039s] Loading trace points... [0.074s] Sorting trace points... [1.367s] Computing alignments... [49.392s] Deallocating buffers... [0.037s] Loading trace points... [0.046s] Sorting trace points... [1.554s] Computing alignments... [49.219s] Deallocating buffers... [0.035s] Loading trace points... [0.076s] Sorting trace points... [1.589s] Computing alignments... [49.758s] Deallocating buffers... [0.035s] Loading trace points... [0.049s] Sorting trace points... [1.443s] Computing alignments... [47.989s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.458s] Computing alignments... [48.081s] Deallocating buffers... [0.035s] Loading trace points... [0s] [827.452s] Deallocating reference... [0.068s] Loading reference sequences... [31.823s] Masking reference... [31.728s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.103s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.308s] Building query seed array... [2.54s] Computing hash join... [5.342s] Masking low complexity seeds... [0.319s] Searching alignments... [430.024s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.741s] Building query seed array... [2.885s] Computing hash join... [5.299s] Masking low complexity seeds... [0.324s] Searching alignments... [181.008s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.431s] Building query seed array... [3.02s] Computing hash join... [5.344s] Masking low complexity seeds... [0.321s] Searching alignments... [137.03s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.844s] Building query seed array... [2.535s] Computing hash join... [5.35s] Masking low complexity seeds... [0.32s] Searching alignments... [138.502s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.906s] Building query seed array... [2.229s] Computing hash join... [5.081s] Masking low complexity seeds... [0.296s] Searching alignments... [199.314s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.891s] Building query seed array... [2.652s] Computing hash join... [5.147s] Masking low complexity seeds... [0.288s] Searching alignments... [160.816s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.401s] Building query seed array... [2.801s] Computing hash join... [5.114s] Masking low complexity seeds... [0.297s] Searching alignments... [123.384s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.052s] Building query seed array... [2.367s] Computing hash join... [5.181s] Masking low complexity seeds... [0.3s] Searching alignments... [125.537s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.669s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.074s] Sorting trace points... [1.99s] Computing alignments... [48.318s] Deallocating buffers... [0.039s] Loading trace points... [0.045s] Sorting trace points... [1.846s] Computing alignments... [49.036s] Deallocating buffers... [0.038s] Loading trace points... [0.067s] Sorting trace points... [1.872s] Computing alignments... [48.429s] Deallocating buffers... [0.029s] Loading trace points... [0.093s] Sorting trace points... [1.419s] Computing alignments... [51.074s] Deallocating buffers... [0.038s] Loading trace points... [0.079s] Sorting trace points... [1.938s] Computing alignments... [50.107s] Deallocating buffers... [0.034s] Loading trace points... [0.085s] Sorting trace points... [1.747s] Computing alignments... [49.251s] Deallocating buffers... [0.038s] Loading trace points... [0.075s] Sorting trace points... [1.89s] Computing alignments... [48.55s] Deallocating buffers... [0.036s] Loading trace points... [0.051s] Sorting trace points... [1.944s] Computing alignments... [50.478s] Deallocating buffers... [0.035s] Loading trace points... [0.068s] Sorting trace points... [1.806s] Computing alignments... [49.523s] Deallocating buffers... [0.034s] Loading trace points... [0.07s] Sorting trace points... [1.519s] Computing alignments... [49.873s] Deallocating buffers... [0.037s] Loading trace points... [0.001s] Sorting trace points... [1.373s] Computing alignments... [49.782s] Deallocating buffers... [0.036s] Loading trace points... [0.061s] Sorting trace points... [1.868s] Computing alignments... [49.451s] Deallocating buffers... [0.023s] Loading trace points... [0.055s] Sorting trace points... [1.849s] Computing alignments... [49.502s] Deallocating buffers... [0.034s] Loading trace points... [0.001s] Sorting trace points... [1.85s] Computing alignments... [49.898s] Deallocating buffers... [0.034s] Loading trace points... [0.048s] Sorting trace points... [1.711s] Computing alignments... [48.035s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.416s] Computing alignments... [48.299s] Deallocating buffers... [0.036s] Loading trace points... [0s] [829.2s] Deallocating reference... [0.075s] Loading reference sequences... [30.686s] Masking reference... [30.866s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.382s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.265s] Building query seed array... [2.556s] Computing hash join... [5.417s] Masking low complexity seeds... [0.325s] Searching alignments... [431.801s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.514s] Building query seed array... [2.918s] Computing hash join... [5.363s] Masking low complexity seeds... [0.321s] Searching alignments... [178.253s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.077s] Building query seed array... [3.018s] Computing hash join... [5.359s] Masking low complexity seeds... [0.314s] Searching alignments... [141.553s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.03s] Building query seed array... [2.466s] Computing hash join... [5.314s] Masking low complexity seeds... [0.317s] Searching alignments... [135.265s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.057s] Building query seed array... [2.359s] Computing hash join... [5.193s] Masking low complexity seeds... [0.305s] Searching alignments... [205.602s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.349s] Building query seed array... [2.683s] Computing hash join... [5.075s] Masking low complexity seeds... [0.299s] Searching alignments... [160.454s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.31s] Building query seed array... [2.8s] Computing hash join... [5.13s] Masking low complexity seeds... [0.304s] Searching alignments... [118.977s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.824s] Building query seed array... [2.409s] Computing hash join... [5.093s] Masking low complexity seeds... [0.309s] Searching alignments... [124.46s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.664s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.092s] Sorting trace points... [1.835s] Computing alignments... [47.462s] Deallocating buffers... [0.036s] Loading trace points... [0.085s] Sorting trace points... [1.452s] Computing alignments... [47.263s] Deallocating buffers... [0.035s] Loading trace points... [0.057s] Sorting trace points... [1.854s] Computing alignments... [47.115s] Deallocating buffers... [0.033s] Loading trace points... [0.001s] Sorting trace points... [1.915s] Computing alignments... [49.762s] Deallocating buffers... [0.04s] Loading trace points... [0.058s] Sorting trace points... [1.418s] Computing alignments... [48.657s] Deallocating buffers... [0.037s] Loading trace points... [0.064s] Sorting trace points... [1.343s] Computing alignments... [47.872s] Deallocating buffers... [0.026s] Loading trace points... [0.055s] Sorting trace points... [1.464s] Computing alignments... [47.255s] Deallocating buffers... [0.034s] Loading trace points... [0.074s] Sorting trace points... [1.871s] Computing alignments... [48.588s] Deallocating buffers... [0.035s] Loading trace points... [0.057s] Sorting trace points... [1.895s] Computing alignments... [48.138s] Deallocating buffers... [0.038s] Loading trace points... [0.081s] Sorting trace points... [1.833s] Computing alignments... [48.375s] Deallocating buffers... [0.034s] Loading trace points... [0.059s] Sorting trace points... [1.644s] Computing alignments... [48.177s] Deallocating buffers... [0.038s] Loading trace points... [0.052s] Sorting trace points... [1.462s] Computing alignments... [48.058s] Deallocating buffers... [0.035s] Loading trace points... [0.07s] Sorting trace points... [1.731s] Computing alignments... [47.553s] Deallocating buffers... [0.034s] Loading trace points... [0.066s] Sorting trace points... [1.798s] Computing alignments... [47.936s] Deallocating buffers... [0.037s] Loading trace points... [0.09s] Sorting trace points... [1.876s] Computing alignments... [46.49s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.786s] Computing alignments... [46.731s] Deallocating buffers... [0.033s] Loading trace points... [0s] [804.229s] Deallocating reference... [0.075s] Loading reference sequences... [30.041s] Masking reference... [30.879s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [33.787s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.555s] Building query seed array... [2.491s] Computing hash join... [5.312s] Masking low complexity seeds... [0.314s] Searching alignments... [439.429s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.816s] Building query seed array... [2.998s] Computing hash join... [5.303s] Masking low complexity seeds... [0.306s] Searching alignments... [182.379s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.374s] Building query seed array... [3.073s] Computing hash join... [5.405s] Masking low complexity seeds... [0.326s] Searching alignments... [143.918s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.839s] Building query seed array... [2.6s] Computing hash join... [5.296s] Masking low complexity seeds... [0.311s] Searching alignments... [136.02s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.812s] Building query seed array... [2.31s] Computing hash join... [5.072s] Masking low complexity seeds... [0.302s] Searching alignments... [212.539s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.386s] Building query seed array... [2.654s] Computing hash join... [5.166s] Masking low complexity seeds... [0.313s] Searching alignments... [161.228s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.457s] Building query seed array... [2.788s] Computing hash join... [5.142s] Masking low complexity seeds... [0.303s] Searching alignments... [118.95s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.833s] Building query seed array... [2.448s] Computing hash join... [5.14s] Masking low complexity seeds... [0.31s] Searching alignments... [127.577s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.682s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.089s] Sorting trace points... [1.923s] Computing alignments... [55.424s] Deallocating buffers... [0.038s] Loading trace points... [0.049s] Sorting trace points... [1.813s] Computing alignments... [55.441s] Deallocating buffers... [0.039s] Loading trace points... [0.059s] Sorting trace points... [1.565s] Computing alignments... [55.779s] Deallocating buffers... [0.041s] Loading trace points... [0.052s] Sorting trace points... [1.995s] Computing alignments... [59.89s] Deallocating buffers... [0.04s] Loading trace points... [0.097s] Sorting trace points... [1.518s] Computing alignments... [55.933s] Deallocating buffers... [0.04s] Loading trace points... [0.073s] Sorting trace points... [1.995s] Computing alignments... [56.751s] Deallocating buffers... [0.035s] Loading trace points... [0.07s] Sorting trace points... [1.855s] Computing alignments... [55.952s] Deallocating buffers... [0.039s] Loading trace points... [0.049s] Sorting trace points... [1.509s] Computing alignments... [56.283s] Deallocating buffers... [0.042s] Loading trace points... [0.07s] Sorting trace points... [1.957s] Computing alignments... [57.182s] Deallocating buffers... [0.037s] Loading trace points... [0.043s] Sorting trace points... [1.873s] Computing alignments... [57.622s] Deallocating buffers... [0.041s] Loading trace points... [0.002s] Sorting trace points... [1.751s] Computing alignments... [55.286s] Deallocating buffers... [0.042s] Loading trace points... [0.059s] Sorting trace points... [1.889s] Computing alignments... [56.241s] Deallocating buffers... [0.03s] Loading trace points... [0.057s] Sorting trace points... [1.537s] Computing alignments... [55.798s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.644s] Computing alignments... [55.564s] Deallocating buffers... [0.042s] Loading trace points... [0.048s] Sorting trace points... [1.869s] Computing alignments... [54.208s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [1.773s] Computing alignments... [54.911s] Deallocating buffers... [0.039s] Loading trace points... [0s] [938.316s] Deallocating reference... [0.081s] Loading reference sequences... [34.014s] Masking reference... [31.53s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.785s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.236s] Building query seed array... [2.619s] Computing hash join... [5.355s] Masking low complexity seeds... [0.325s] Searching alignments... [430.449s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.695s] Building query seed array... [2.951s] Computing hash join... [5.289s] Masking low complexity seeds... [0.323s] Searching alignments... [181.401s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.556s] Building query seed array... [3.022s] Computing hash join... [5.43s] Masking low complexity seeds... [0.322s] Searching alignments... [138.196s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.069s] Building query seed array... [2.455s] Computing hash join... [5.259s] Masking low complexity seeds... [0.324s] Searching alignments... [134.626s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.174s] Building query seed array... [2.316s] Computing hash join... [5.107s] Masking low complexity seeds... [0.311s] Searching alignments... [200.367s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.571s] Building query seed array... [2.645s] Computing hash join... [5.067s] Masking low complexity seeds... [0.297s] Searching alignments... [158.426s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.239s] Building query seed array... [2.785s] Computing hash join... [5.068s] Masking low complexity seeds... [0.294s] Searching alignments... [117.195s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.751s] Building query seed array... [2.41s] Computing hash join... [5.115s] Masking low complexity seeds... [0.311s] Searching alignments... [125.201s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.707s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.091s] Sorting trace points... [1.952s] Computing alignments... [46.663s] Deallocating buffers... [0.036s] Loading trace points... [0.541s] Sorting trace points... [1.905s] Computing alignments... [46.174s] Deallocating buffers... [0.024s] Loading trace points... [0.061s] Sorting trace points... [1.857s] Computing alignments... [46.253s] Deallocating buffers... [0.038s] Loading trace points... [0.045s] Sorting trace points... [1.927s] Computing alignments... [48.958s] Deallocating buffers... [0.035s] Loading trace points... [0.076s] Sorting trace points... [1.896s] Computing alignments... [47.74s] Deallocating buffers... [0.037s] Loading trace points... [0.078s] Sorting trace points... [1.405s] Computing alignments... [46.783s] Deallocating buffers... [0.037s] Loading trace points... [0.095s] Sorting trace points... [1.535s] Computing alignments... [46.393s] Deallocating buffers... [0.037s] Loading trace points... [0.047s] Sorting trace points... [1.636s] Computing alignments... [47.861s] Deallocating buffers... [0.038s] Loading trace points... [0.078s] Sorting trace points... [1.909s] Computing alignments... [47.14s] Deallocating buffers... [0.033s] Loading trace points... [0.062s] Sorting trace points... [1.881s] Computing alignments... [47.307s] Deallocating buffers... [0.034s] Loading trace points... [0.073s] Sorting trace points... [1.633s] Computing alignments... [47.043s] Deallocating buffers... [0.035s] Loading trace points... [0.073s] Sorting trace points... [1.915s] Computing alignments... [47.104s] Deallocating buffers... [0.034s] Loading trace points... [0.789s] Sorting trace points... [1.384s] Computing alignments... [46.467s] Deallocating buffers... [0.036s] Loading trace points... [0.095s] Sorting trace points... [1.37s] Computing alignments... [46.916s] Deallocating buffers... [0.036s] Loading trace points... [0.055s] Sorting trace points... [1.475s] Computing alignments... [45.688s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.801s] Computing alignments... [45.702s] Deallocating buffers... [0.023s] Loading trace points... [0s] [790.593s] Deallocating reference... [0.06s] Loading reference sequences... [29.721s] Masking reference... [30.841s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [33.556s] Allocating buffers... [0.001s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.1s] Building query seed array... [2.546s] Computing hash join... [5.379s] Masking low complexity seeds... [0.313s] Searching alignments... [433.865s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.42s] Building query seed array... [2.959s] Computing hash join... [5.32s] Masking low complexity seeds... [0.315s] Searching alignments... [182.285s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.154s] Building query seed array... [2.998s] Computing hash join... [5.239s] Masking low complexity seeds... [0.322s] Searching alignments... [140.422s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.922s] Building query seed array... [2.513s] Computing hash join... [5.243s] Masking low complexity seeds... [0.321s] Searching alignments... [137.878s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.898s] Building query seed array... [2.38s] Computing hash join... [5.04s] Masking low complexity seeds... [0.31s] Searching alignments... [202.916s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.488s] Building query seed array... [2.675s] Computing hash join... [5.13s] Masking low complexity seeds... [0.295s] Searching alignments... [161.478s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.615s] Building query seed array... [2.775s] Computing hash join... [5.094s] Masking low complexity seeds... [0.293s] Searching alignments... [118.72s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.949s] Building query seed array... [2.388s] Computing hash join... [5.015s] Masking low complexity seeds... [0.305s] Searching alignments... [125.152s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [1.663s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.138s] Sorting trace points... [1.984s] Computing alignments... [56.745s] Deallocating buffers... [0.035s] Loading trace points... [0.123s] Sorting trace points... [1.82s] Computing alignments... [57.544s] Deallocating buffers... [0.031s] Loading trace points... [0.071s] Sorting trace points... [1.855s] Computing alignments... [56.705s] Deallocating buffers... [0.033s] Loading trace points... [0.08s] Sorting trace points... [1.5s] Computing alignments... [60.925s] Deallocating buffers... [0.038s] Loading trace points... [0.096s] Sorting trace points... [1.997s] Computing alignments... [58.18s] Deallocating buffers... [0.034s] Loading trace points... [0.079s] Sorting trace points... [1.364s] Computing alignments... [58.113s] Deallocating buffers... [0.036s] Loading trace points... [0.077s] Sorting trace points... [1.467s] Computing alignments... [56.688s] Deallocating buffers... [0.036s] Loading trace points... [0.056s] Sorting trace points... [1.885s] Computing alignments... [58.093s] Deallocating buffers... [0.041s] Loading trace points... [0.075s] Sorting trace points... [1.471s] Computing alignments... [58.802s] Deallocating buffers... [0.035s] Loading trace points... [0.069s] Sorting trace points... [1.696s] Computing alignments... [59.07s] Deallocating buffers... [0.038s] Loading trace points... [0.05s] Sorting trace points... [1.877s] Computing alignments... [57.361s] Deallocating buffers... [0.032s] Loading trace points... [0.059s] Sorting trace points... [1.931s] Computing alignments... [57.169s] Deallocating buffers... [0.039s] Loading trace points... [0.05s] Sorting trace points... [1.949s] Computing alignments... [57.406s] Deallocating buffers... [0.033s] Loading trace points... [0.078s] Sorting trace points... [1.927s] Computing alignments... [57.503s] Deallocating buffers... [0.034s] Loading trace points... [0.076s] Sorting trace points... [1.401s] Computing alignments... [55.577s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.785s] Computing alignments... [56.545s] Deallocating buffers... [0.038s] Loading trace points... [0s] [962.203s] Deallocating reference... [0.069s] Loading reference sequences... [247.945s] Masking reference... [31.028s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.523s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.617s] Building query seed array... [2.658s] Computing hash join... [5.358s] Masking low complexity seeds... [0.32s] Searching alignments... [431.293s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.417s] Building query seed array... [2.992s] Computing hash join... [5.29s] Masking low complexity seeds... [0.318s] Searching alignments... [182.316s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.439s] Building query seed array... [3.07s] Computing hash join... [5.222s] Masking low complexity seeds... [0.315s] Searching alignments... [144.081s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.815s] Building query seed array... [2.457s] Computing hash join... [5.335s] Masking low complexity seeds... [0.324s] Searching alignments... [140.205s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.657s] Building query seed array... [2.269s] Computing hash join... [5.122s] Masking low complexity seeds... [0.305s] Searching alignments... [206.654s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.629s] Building query seed array... [2.714s] Computing hash join... [5.097s] Masking low complexity seeds... [0.311s] Searching alignments... [159.001s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.107s] Building query seed array... [2.76s] Computing hash join... [5.088s] Masking low complexity seeds... [0.297s] Searching alignments... [118.773s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.022s] Building query seed array... [2.317s] Computing hash join... [5.208s] Masking low complexity seeds... [0.3s] Searching alignments... [123.426s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.646s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [10.093s] Sorting trace points... [1.931s] Computing alignments... [56.839s] Deallocating buffers... [0.039s] Loading trace points... [0.059s] Sorting trace points... [1.934s] Computing alignments... [56.377s] Deallocating buffers... [0.036s] Loading trace points... [0.001s] Sorting trace points... [1.447s] Computing alignments... [56.643s] Deallocating buffers... [0.041s] Loading trace points... [0.082s] Sorting trace points... [1.588s] Computing alignments... [60.583s] Deallocating buffers... [0.041s] Loading trace points... [0.091s] Sorting trace points... [1.892s] Computing alignments... [56.746s] Deallocating buffers... [0.028s] Loading trace points... [0.067s] Sorting trace points... [1.454s] Computing alignments... [57.555s] Deallocating buffers... [0.039s] Loading trace points... [0.056s] Sorting trace points... [1.668s] Computing alignments... [56.79s] Deallocating buffers... [0.04s] Loading trace points... [0.069s] Sorting trace points... [1.91s] Computing alignments... [57.679s] Deallocating buffers... [0.045s] Loading trace points... [0.048s] Sorting trace points... [1.86s] Computing alignments... [57.931s] Deallocating buffers... [0.037s] Loading trace points... [0.077s] Sorting trace points... [1.9s] Computing alignments... [58.401s] Deallocating buffers... [0.039s] Loading trace points... [0.062s] Sorting trace points... [1.842s] Computing alignments... [56.327s] Deallocating buffers... [0.042s] Loading trace points... [0.065s] Sorting trace points... [1.923s] Computing alignments... [56.478s] Deallocating buffers... [0.038s] Loading trace points... [0.064s] Sorting trace points... [1.918s] Computing alignments... [56.189s] Deallocating buffers... [0.036s] Loading trace points... [0.053s] Sorting trace points... [1.437s] Computing alignments... [56.343s] Deallocating buffers... [0.042s] Loading trace points... [0.092s] Sorting trace points... [1.699s] Computing alignments... [54.91s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.637s] Computing alignments... [56.159s] Deallocating buffers... [0.04s] Loading trace points... [0s] [951.683s] Deallocating reference... [0.08s] Loading reference sequences... [35.475s] Masking reference... [31.09s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.179s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.367s] Building query seed array... [2.538s] Computing hash join... [5.313s] Masking low complexity seeds... [0.313s] Searching alignments... [435.113s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.64s] Building query seed array... [2.856s] Computing hash join... [5.305s] Masking low complexity seeds... [0.316s] Searching alignments... [182.731s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.211s] Building query seed array... [3.098s] Computing hash join... [5.301s] Masking low complexity seeds... [0.318s] Searching alignments... [138.278s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.077s] Building query seed array... [2.576s] Computing hash join... [5.273s] Masking low complexity seeds... [0.319s] Searching alignments... [135.591s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.368s] Building query seed array... [2.386s] Computing hash join... [5.133s] Masking low complexity seeds... [0.311s] Searching alignments... [199.075s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.389s] Building query seed array... [2.687s] Computing hash join... [5.172s] Masking low complexity seeds... [0.304s] Searching alignments... [156.798s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.079s] Building query seed array... [2.81s] Computing hash join... [5.223s] Masking low complexity seeds... [0.311s] Searching alignments... [120.368s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.782s] Building query seed array... [2.395s] Computing hash join... [5.221s] Masking low complexity seeds... [0.301s] Searching alignments... [128.775s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.786s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.047s] Sorting trace points... [1.833s] Computing alignments... [54.276s] Deallocating buffers... [0.036s] Loading trace points... [0.053s] Sorting trace points... [1.877s] Computing alignments... [54.1s] Deallocating buffers... [0.038s] Loading trace points... [0.058s] Sorting trace points... [1.565s] Computing alignments... [54.352s] Deallocating buffers... [0.034s] Loading trace points... [0.058s] Sorting trace points... [1.851s] Computing alignments... [58.125s] Deallocating buffers... [0.037s] Loading trace points... [0.063s] Sorting trace points... [1.689s] Computing alignments... [55.168s] Deallocating buffers... [0.032s] Loading trace points... [0.079s] Sorting trace points... [1.626s] Computing alignments... [55.272s] Deallocating buffers... [0.035s] Loading trace points... [0.076s] Sorting trace points... [1.583s] Computing alignments... [54.582s] Deallocating buffers... [0.033s] Loading trace points... [0.047s] Sorting trace points... [1.774s] Computing alignments... [55.33s] Deallocating buffers... [0.039s] Loading trace points... [0.067s] Sorting trace points... [1.559s] Computing alignments... [56.278s] Deallocating buffers... [0.038s] Loading trace points... [0.052s] Sorting trace points... [1.8s] Computing alignments... [56.054s] Deallocating buffers... [0.039s] Loading trace points... [0.001s] Sorting trace points... [1.913s] Computing alignments... [54.758s] Deallocating buffers... [0.04s] Loading trace points... [0.087s] Sorting trace points... [1.936s] Computing alignments... [55.068s] Deallocating buffers... [0.035s] Loading trace points... [0.077s] Sorting trace points... [1.898s] Computing alignments... [54.666s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.901s] Computing alignments... [54.822s] Deallocating buffers... [0.039s] Loading trace points... [0.053s] Sorting trace points... [1.587s] Computing alignments... [53.206s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.434s] Computing alignments... [54.131s] Deallocating buffers... [0.036s] Loading trace points... [0s] [919.525s] Deallocating reference... [0.073s] Loading reference sequences... [23.632s] Masking reference... [25.094s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [27.171s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.739s] Building query seed array... [2.608s] Computing hash join... [4.452s] Masking low complexity seeds... [0.311s] Searching alignments... [346.779s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.907s] Building query seed array... [2.882s] Computing hash join... [4.488s] Masking low complexity seeds... [0.308s] Searching alignments... [145.99s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.288s] Building query seed array... [2.988s] Computing hash join... [4.427s] Masking low complexity seeds... [0.299s] Searching alignments... [113.572s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.348s] Building query seed array... [2.573s] Computing hash join... [4.412s] Masking low complexity seeds... [0.296s] Searching alignments... [110.332s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.282s] Building query seed array... [2.371s] Computing hash join... [4.294s] Masking low complexity seeds... [0.294s] Searching alignments... [159.611s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.273s] Building query seed array... [2.694s] Computing hash join... [4.243s] Masking low complexity seeds... [0.287s] Searching alignments... [129.698s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.939s] Building query seed array... [2.767s] Computing hash join... [4.302s] Masking low complexity seeds... [0.296s] Searching alignments... [97.414s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.147s] Building query seed array... [2.408s] Computing hash join... [4.282s] Masking low complexity seeds... [0.283s] Searching alignments... [98.8s] Deallocating memory... [0s] Deallocating buffers... [0.118s] Clearing query masking... [1.76s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.353s] Sorting trace points... [1.643s] Computing alignments... [42.16s] Deallocating buffers... [0.031s] Loading trace points... [0.059s] Sorting trace points... [1.341s] Computing alignments... [41.244s] Deallocating buffers... [0.031s] Loading trace points... [0.049s] Sorting trace points... [1.256s] Computing alignments... [42.206s] Deallocating buffers... [0.028s] Loading trace points... [0.055s] Sorting trace points... [1.336s] Computing alignments... [44.832s] Deallocating buffers... [0.033s] Loading trace points... [0.002s] Sorting trace points... [1.559s] Computing alignments... [42.83s] Deallocating buffers... [0.027s] Loading trace points... [0.079s] Sorting trace points... [1.497s] Computing alignments... [42.866s] Deallocating buffers... [0.027s] Loading trace points... [0.076s] Sorting trace points... [1.511s] Computing alignments... [42.695s] Deallocating buffers... [0.027s] Loading trace points... [0.046s] Sorting trace points... [1.506s] Computing alignments... [42.695s] Deallocating buffers... [0.032s] Loading trace points... [0.069s] Sorting trace points... [1.125s] Computing alignments... [43.069s] Deallocating buffers... [0.03s] Loading trace points... [0.085s] Sorting trace points... [1.408s] Computing alignments... [43.048s] Deallocating buffers... [0.029s] Loading trace points... [0.598s] Sorting trace points... [1.541s] Computing alignments... [42.243s] Deallocating buffers... [0.031s] Loading trace points... [0.062s] Sorting trace points... [1.33s] Computing alignments... [43.184s] Deallocating buffers... [0.023s] Loading trace points... [0.07s] Sorting trace points... [1.417s] Computing alignments... [42.221s] Deallocating buffers... [0.032s] Loading trace points... [0.054s] Sorting trace points... [1.377s] Computing alignments... [42.036s] Deallocating buffers... [0.031s] Loading trace points... [0.052s] Sorting trace points... [1.526s] Computing alignments... [41.613s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.115s] Computing alignments... [41.49s] Deallocating buffers... [0.029s] Loading trace points... [0s] [713.212s] Deallocating reference... [0.061s] Loading reference sequences... [0.082s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2576.3s] [2576.3s] Deallocating queries... [0.077s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.743s] [4.629s] Closing the database... [0s] Cleaning up... [0s] Total time = 39891.1s Reported 3061215345 pairwise alignments, 3061215345 HSPs. 3572438 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R2.fastq.gz complete: CH07-04.trimmed.R2.blastx.meganized.daa Now MEGANizing CH07-04.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-04.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (237.2s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,563.2s) Total reads: 3,572,438 With hits: 3,572,438 Alignments: 2,396,785,437 Assig. Taxonomy: 2,339,971 Assig. SEED: 99,094 Assig. EGGNOG: 34,528 Assig. GTDB: 235,973 Assig. EC: 368,437 Assig. INTERPRO2GO: 958,566 MinSupport set to: 1786 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 6,332 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.5s) Min-supp. changes: 4,999 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.5s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 201 Class. SEED: 512 Class. EGGNOG: 1,822 Class. GTDB: 66 Class. EC: 2,568 Class. INTERPRO2GO: 8,920 Total time: 5,827s Peak memory: 33.6 of 195.3G MEGANization of CH07-04.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R1.fastq.gz... db6739f62a769bc9ea66f3d0192f1d3b /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.292s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.744s] Opening the output file... [2.678s] Loading query sequences... [87.892s] Masking queries... [24.602s] Algorithm: Double-indexed Building query histograms... [19.035s] Loading reference sequences... [29.655s] Masking reference... [30.828s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [33.352s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.144s] Building query seed array... [2.143s] Computing hash join... [5.12s] Masking low complexity seeds... [0.198s] Searching alignments... [713.4s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.256s] Building query seed array... [2.33s] Computing hash join... [4.882s] Masking low complexity seeds... [0.194s] Searching alignments... [303.793s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.426s] Building query seed array... [2.541s] Computing hash join... [4.913s] Masking low complexity seeds... [0.191s] Searching alignments... [233.322s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.042s] Building query seed array... [2.064s] Computing hash join... [4.869s] Masking low complexity seeds... [0.189s] Searching alignments... [227.613s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.919s] Building query seed array... [1.943s] Computing hash join... [4.779s] Masking low complexity seeds... [0.171s] Searching alignments... [348.78s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.326s] Building query seed array... [2.271s] Computing hash join... [4.778s] Masking low complexity seeds... [0.179s] Searching alignments... [258.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.315s] Building query seed array... [2.378s] Computing hash join... [4.69s] Masking low complexity seeds... [0.18s] Searching alignments... [187.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.952s] Building query seed array... [1.975s] Computing hash join... [4.718s] Masking low complexity seeds... [0.174s] Searching alignments... [197.6s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.494s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [14.126s] Sorting trace points... [2.71s] Computing alignments... [82.156s] Deallocating buffers... [0.058s] Loading trace points... [0.082s] Sorting trace points... [2.607s] Computing alignments... [85.767s] Deallocating buffers... [0.048s] Loading trace points... [0.043s] Sorting trace points... [2.099s] Computing alignments... [84.266s] Deallocating buffers... [0.054s] Loading trace points... [0.107s] Sorting trace points... [2.887s] Computing alignments... [87.117s] Deallocating buffers... [0.043s] Loading trace points... [0.074s] Sorting trace points... [1.986s] Computing alignments... [83.478s] Deallocating buffers... [0.055s] Loading trace points... [0.107s] Sorting trace points... [1.902s] Computing alignments... [82.396s] Deallocating buffers... [0.049s] Loading trace points... [0.091s] Sorting trace points... [2.719s] Computing alignments... [84.521s] Deallocating buffers... [0.056s] Loading trace points... [0.085s] Sorting trace points... [2.834s] Computing alignments... [85.372s] Deallocating buffers... [0.059s] Loading trace points... [0.065s] Sorting trace points... [1.992s] Computing alignments... [84.004s] Deallocating buffers... [0.053s] Loading trace points... [0.086s] Sorting trace points... [2.759s] Computing alignments... [85.361s] Deallocating buffers... [0.046s] Loading trace points... [0.06s] Sorting trace points... [2.18s] Computing alignments... [85.931s] Deallocating buffers... [0.054s] Loading trace points... [0.072s] Sorting trace points... [2.819s] Computing alignments... [86.534s] Deallocating buffers... [0.058s] Loading trace points... [0.049s] Sorting trace points... [2.737s] Computing alignments... [84.5s] Deallocating buffers... [0.036s] Loading trace points... [0.099s] Sorting trace points... [2.071s] Computing alignments... [86.713s] Deallocating buffers... [0.053s] Loading trace points... [0.064s] Sorting trace points... [2.015s] Computing alignments... [84.903s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [2.87s] Computing alignments... [87.289s] Deallocating buffers... [0.064s] Loading trace points... [0s] [1415.69s] Deallocating reference... [0.07s] Loading reference sequences... [30.188s] Masking reference... [32.232s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.048s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.111s] Building query seed array... [2.159s] Computing hash join... [4.988s] Masking low complexity seeds... [0.194s] Searching alignments... [707.174s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.494s] Building query seed array... [2.451s] Computing hash join... [4.926s] Masking low complexity seeds... [0.19s] Searching alignments... [300.068s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.493s] Building query seed array... [2.57s] Computing hash join... [4.984s] Masking low complexity seeds... [0.191s] Searching alignments... [225.04s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.152s] Building query seed array... [2.073s] Computing hash join... [4.896s] Masking low complexity seeds... [0.185s] Searching alignments... [224.894s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.29s] Building query seed array... [1.896s] Computing hash join... [4.712s] Masking low complexity seeds... [0.176s] Searching alignments... [331.035s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.002s] Building query seed array... [2.261s] Computing hash join... [4.777s] Masking low complexity seeds... [0.187s] Searching alignments... [255.984s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.148s] Building query seed array... [2.29s] Computing hash join... [4.754s] Masking low complexity seeds... [0.191s] Searching alignments... [187.165s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.936s] Building query seed array... [2s] Computing hash join... [4.833s] Masking low complexity seeds... [0.193s] Searching alignments... [194.671s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.473s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.084s] Sorting trace points... [2.719s] Computing alignments... [86.706s] Deallocating buffers... [0.075s] Loading trace points... [0.058s] Sorting trace points... [2.379s] Computing alignments... [89.907s] Deallocating buffers... [0.075s] Loading trace points... [0.058s] Sorting trace points... [2.002s] Computing alignments... [89.007s] Deallocating buffers... [0.079s] Loading trace points... [0.08s] Sorting trace points... [2.8s] Computing alignments... [91.239s] Deallocating buffers... [0.07s] Loading trace points... [0.075s] Sorting trace points... [2.688s] Computing alignments... [88.11s] Deallocating buffers... [0.083s] Loading trace points... [0.068s] Sorting trace points... [2.741s] Computing alignments... [86.521s] Deallocating buffers... [0.078s] Loading trace points... [0.091s] Sorting trace points... [2.191s] Computing alignments... [90.241s] Deallocating buffers... [0.078s] Loading trace points... [0.045s] Sorting trace points... [1.99s] Computing alignments... [90.024s] Deallocating buffers... [0.07s] Loading trace points... [0.061s] Sorting trace points... [2.103s] Computing alignments... [88.058s] Deallocating buffers... [0.079s] Loading trace points... [0.062s] Sorting trace points... [2.739s] Computing alignments... [88.758s] Deallocating buffers... [0.065s] Loading trace points... [0.05s] Sorting trace points... [2.46s] Computing alignments... [90.277s] Deallocating buffers... [0.07s] Loading trace points... [0.045s] Sorting trace points... [2.352s] Computing alignments... [89.51s] Deallocating buffers... [0.082s] Loading trace points... [0.083s] Sorting trace points... [2.309s] Computing alignments... [88.062s] Deallocating buffers... [0.068s] Loading trace points... [0.039s] Sorting trace points... [2.056s] Computing alignments... [91.663s] Deallocating buffers... [0.091s] Loading trace points... [0.101s] Sorting trace points... [2.302s] Computing alignments... [88.986s] Deallocating buffers... [0.077s] Loading trace points... [0s] Sorting trace points... [2.439s] Computing alignments... [92.469s] Deallocating buffers... [0.074s] Loading trace points... [0s] [1484.12s] Deallocating reference... [0.068s] Loading reference sequences... [29.787s] Masking reference... [30.862s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.908s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.119s] Building query seed array... [2.161s] Computing hash join... [4.913s] Masking low complexity seeds... [0.186s] Searching alignments... [713.847s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.258s] Building query seed array... [2.422s] Computing hash join... [4.864s] Masking low complexity seeds... [0.187s] Searching alignments... [302.823s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.918s] Building query seed array... [2.491s] Computing hash join... [4.95s] Masking low complexity seeds... [0.191s] Searching alignments... [226.768s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.167s] Building query seed array... [2.07s] Computing hash join... [4.945s] Masking low complexity seeds... [0.188s] Searching alignments... [225.868s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.059s] Building query seed array... [1.904s] Computing hash join... [4.785s] Masking low complexity seeds... [0.179s] Searching alignments... [336.71s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.205s] Building query seed array... [2.21s] Computing hash join... [4.793s] Masking low complexity seeds... [0.172s] Searching alignments... [261.363s] Deallocating memory... [0.004s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.377s] Building query seed array... [2.335s] Computing hash join... [4.833s] Masking low complexity seeds... [0.178s] Searching alignments... [188.291s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.94s] Building query seed array... [2.002s] Computing hash join... [4.737s] Masking low complexity seeds... [0.174s] Searching alignments... [200.313s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.422s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.944s] Sorting trace points... [2.655s] Computing alignments... [87.013s] Deallocating buffers... [0.076s] Loading trace points... [0.065s] Sorting trace points... [2.303s] Computing alignments... [90.797s] Deallocating buffers... [0.077s] Loading trace points... [0.002s] Sorting trace points... [2.784s] Computing alignments... [88.84s] Deallocating buffers... [0.073s] Loading trace points... [0.075s] Sorting trace points... [2.807s] Computing alignments... [91.176s] Deallocating buffers... [0.074s] Loading trace points... [0.107s] Sorting trace points... [2.109s] Computing alignments... [87.916s] Deallocating buffers... [0.077s] Loading trace points... [0.085s] Sorting trace points... [2.286s] Computing alignments... [85.979s] Deallocating buffers... [0.066s] Loading trace points... [0.07s] Sorting trace points... [2.656s] Computing alignments... [89.929s] Deallocating buffers... [0.086s] Loading trace points... [0.076s] Sorting trace points... [2.78s] Computing alignments... [90.316s] Deallocating buffers... [0.068s] Loading trace points... [0.059s] Sorting trace points... [2.26s] Computing alignments... [87.707s] Deallocating buffers... [0.074s] Loading trace points... [0.806s] Sorting trace points... [2.064s] Computing alignments... [88.752s] Deallocating buffers... [0.063s] Loading trace points... [0.088s] Sorting trace points... [2.702s] Computing alignments... [89.956s] Deallocating buffers... [0.075s] Loading trace points... [0.082s] Sorting trace points... [2.625s] Computing alignments... [89.344s] Deallocating buffers... [0.064s] Loading trace points... [0.051s] Sorting trace points... [2.661s] Computing alignments... [88.972s] Deallocating buffers... [0.078s] Loading trace points... [0.103s] Sorting trace points... [2.167s] Computing alignments... [90.886s] Deallocating buffers... [0.053s] Loading trace points... [0.064s] Sorting trace points... [2.796s] Computing alignments... [88.989s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [2.341s] Computing alignments... [92.029s] Deallocating buffers... [0.073s] Loading trace points... [0s] [1485.54s] Deallocating reference... [0.075s] Loading reference sequences... [29.411s] Masking reference... [30.832s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.674s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.408s] Building query seed array... [2.139s] Computing hash join... [4.942s] Masking low complexity seeds... [0.188s] Searching alignments... [716.046s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.858s] Building query seed array... [2.436s] Computing hash join... [4.942s] Masking low complexity seeds... [0.195s] Searching alignments... [301.788s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.33s] Building query seed array... [2.547s] Computing hash join... [4.909s] Masking low complexity seeds... [0.18s] Searching alignments... [226.273s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.257s] Building query seed array... [2.111s] Computing hash join... [4.871s] Masking low complexity seeds... [0.191s] Searching alignments... [228.34s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.033s] Building query seed array... [1.904s] Computing hash join... [4.776s] Masking low complexity seeds... [0.169s] Searching alignments... [337.128s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.275s] Building query seed array... [2.192s] Computing hash join... [4.688s] Masking low complexity seeds... [0.176s] Searching alignments... [260.731s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.972s] Building query seed array... [2.346s] Computing hash join... [4.752s] Masking low complexity seeds... [0.179s] Searching alignments... [190.19s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.674s] Building query seed array... [1.957s] Computing hash join... [4.731s] Masking low complexity seeds... [0.172s] Searching alignments... [201.645s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.47s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.176s] Sorting trace points... [2.838s] Computing alignments... [83.621s] Deallocating buffers... [0.06s] Loading trace points... [0.058s] Sorting trace points... [2.837s] Computing alignments... [88.245s] Deallocating buffers... [0.057s] Loading trace points... [0.071s] Sorting trace points... [2.707s] Computing alignments... [86.583s] Deallocating buffers... [0.058s] Loading trace points... [0.07s] Sorting trace points... [2.144s] Computing alignments... [88.775s] Deallocating buffers... [0.055s] Loading trace points... [0.061s] Sorting trace points... [2.392s] Computing alignments... [86.283s] Deallocating buffers... [0.056s] Loading trace points... [0.096s] Sorting trace points... [2.609s] Computing alignments... [84.249s] Deallocating buffers... [0.058s] Loading trace points... [0.07s] Sorting trace points... [2.431s] Computing alignments... [87.432s] Deallocating buffers... [0.057s] Loading trace points... [0.086s] Sorting trace points... [2.787s] Computing alignments... [87.688s] Deallocating buffers... [0.05s] Loading trace points... [0.068s] Sorting trace points... [2.413s] Computing alignments... [86.21s] Deallocating buffers... [0.051s] Loading trace points... [0.078s] Sorting trace points... [2.235s] Computing alignments... [87.133s] Deallocating buffers... [0.058s] Loading trace points... [0.066s] Sorting trace points... [2.502s] Computing alignments... [87.777s] Deallocating buffers... [0.053s] Loading trace points... [0.087s] Sorting trace points... [2.883s] Computing alignments... [87.525s] Deallocating buffers... [0.057s] Loading trace points... [0.002s] Sorting trace points... [2.572s] Computing alignments... [86.553s] Deallocating buffers... [0.051s] Loading trace points... [0.075s] Sorting trace points... [2.721s] Computing alignments... [88.851s] Deallocating buffers... [0.041s] Loading trace points... [0.076s] Sorting trace points... [2.348s] Computing alignments... [86.477s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [2.102s] Computing alignments... [89.909s] Deallocating buffers... [0.066s] Loading trace points... [0s] [1450s] Deallocating reference... [0.077s] Loading reference sequences... [241.425s] Masking reference... [30.9s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.091s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.729s] Building query seed array... [2.104s] Computing hash join... [4.903s] Masking low complexity seeds... [0.189s] Searching alignments... [705.986s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.222s] Building query seed array... [2.382s] Computing hash join... [4.945s] Masking low complexity seeds... [0.196s] Searching alignments... [302.592s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.447s] Building query seed array... [2.591s] Computing hash join... [4.917s] Masking low complexity seeds... [0.193s] Searching alignments... [227.847s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.189s] Building query seed array... [2.033s] Computing hash join... [5.194s] Masking low complexity seeds... [0.201s] Searching alignments... [228.982s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.26s] Building query seed array... [1.915s] Computing hash join... [4.789s] Masking low complexity seeds... [0.179s] Searching alignments... [329.351s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.255s] Building query seed array... [2.243s] Computing hash join... [4.713s] Masking low complexity seeds... [0.18s] Searching alignments... [263.405s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.205s] Building query seed array... [2.332s] Computing hash join... [4.849s] Masking low complexity seeds... [0.173s] Searching alignments... [189.054s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.739s] Building query seed array... [1.918s] Computing hash join... [4.694s] Masking low complexity seeds... [0.175s] Searching alignments... [194.459s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.537s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.251s] Sorting trace points... [2.602s] Computing alignments... [90.101s] Deallocating buffers... [0.067s] Loading trace points... [0.042s] Sorting trace points... [2.334s] Computing alignments... [93.615s] Deallocating buffers... [0.063s] Loading trace points... [0.073s] Sorting trace points... [2.263s] Computing alignments... [92.113s] Deallocating buffers... [0.069s] Loading trace points... [0.058s] Sorting trace points... [2.709s] Computing alignments... [94.158s] Deallocating buffers... [0.068s] Loading trace points... [0.057s] Sorting trace points... [2.01s] Computing alignments... [91.365s] Deallocating buffers... [0.07s] Loading trace points... [0.052s] Sorting trace points... [2.431s] Computing alignments... [89.31s] Deallocating buffers... [0.061s] Loading trace points... [0.048s] Sorting trace points... [1.998s] Computing alignments... [92.932s] Deallocating buffers... [0.071s] Loading trace points... [0.118s] Sorting trace points... [2.15s] Computing alignments... [93.544s] Deallocating buffers... [0.074s] Loading trace points... [0.056s] Sorting trace points... [2.003s] Computing alignments... [91.055s] Deallocating buffers... [0.061s] Loading trace points... [0.054s] Sorting trace points... [2.033s] Computing alignments... [92.092s] Deallocating buffers... [0.071s] Loading trace points... [0.058s] Sorting trace points... [2.071s] Computing alignments... [93.233s] Deallocating buffers... [0.069s] Loading trace points... [0.062s] Sorting trace points... [2.756s] Computing alignments... [92.361s] Deallocating buffers... [0.069s] Loading trace points... [0.071s] Sorting trace points... [2.214s] Computing alignments... [92.076s] Deallocating buffers... [0.067s] Loading trace points... [0.066s] Sorting trace points... [2.549s] Computing alignments... [94.293s] Deallocating buffers... [0.059s] Loading trace points... [0.061s] Sorting trace points... [2.82s] Computing alignments... [92.611s] Deallocating buffers... [0.075s] Loading trace points... [0s] Sorting trace points... [2.523s] Computing alignments... [96.283s] Deallocating buffers... [0.073s] Loading trace points... [0s] [1534.96s] Deallocating reference... [0.076s] Loading reference sequences... [251.349s] Masking reference... [31.354s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.665s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.591s] Building query seed array... [2.134s] Computing hash join... [5.005s] Masking low complexity seeds... [0.196s] Searching alignments... [706.684s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.526s] Building query seed array... [2.427s] Computing hash join... [4.901s] Masking low complexity seeds... [0.188s] Searching alignments... [296.389s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.419s] Building query seed array... [2.554s] Computing hash join... [4.898s] Masking low complexity seeds... [0.183s] Searching alignments... [227.637s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.93s] Building query seed array... [2.068s] Computing hash join... [4.802s] Masking low complexity seeds... [0.188s] Searching alignments... [227.975s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.924s] Building query seed array... [1.978s] Computing hash join... [4.87s] Masking low complexity seeds... [0.182s] Searching alignments... [336.251s] Deallocating memory... [0.001s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.297s] Building query seed array... [2.213s] Computing hash join... [4.729s] Masking low complexity seeds... [0.177s] Searching alignments... [261.705s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.332s] Building query seed array... [2.32s] Computing hash join... [4.78s] Masking low complexity seeds... [0.176s] Searching alignments... [186.729s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.937s] Building query seed array... [1.978s] Computing hash join... [4.72s] Masking low complexity seeds... [0.175s] Searching alignments... [193.114s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.492s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.031s] Sorting trace points... [2.682s] Computing alignments... [86.551s] Deallocating buffers... [0.05s] Loading trace points... [0.054s] Sorting trace points... [2.394s] Computing alignments... [91.413s] Deallocating buffers... [0.062s] Loading trace points... [0.276s] Sorting trace points... [2.733s] Computing alignments... [88.913s] Deallocating buffers... [0.058s] Loading trace points... [0.001s] Sorting trace points... [2.294s] Computing alignments... [92.085s] Deallocating buffers... [0.057s] Loading trace points... [0.082s] Sorting trace points... [2.614s] Computing alignments... [88.317s] Deallocating buffers... [0.055s] Loading trace points... [0.001s] Sorting trace points... [2.663s] Computing alignments... [85.787s] Deallocating buffers... [0.057s] Loading trace points... [0.18s] Sorting trace points... [2.7s] Computing alignments... [89.054s] Deallocating buffers... [0.049s] Loading trace points... [0.002s] Sorting trace points... [2.776s] Computing alignments... [90.218s] Deallocating buffers... [0.054s] Loading trace points... [0.075s] Sorting trace points... [2.69s] Computing alignments... [88.152s] Deallocating buffers... [0.048s] Loading trace points... [0.047s] Sorting trace points... [2.733s] Computing alignments... [89.028s] Deallocating buffers... [0.046s] Loading trace points... [0.091s] Sorting trace points... [2.684s] Computing alignments... [90.077s] Deallocating buffers... [0.051s] Loading trace points... [0.055s] Sorting trace points... [2.216s] Computing alignments... [90.788s] Deallocating buffers... [0.047s] Loading trace points... [0.057s] Sorting trace points... [2.178s] Computing alignments... [89.193s] Deallocating buffers... [0.056s] Loading trace points... [0.064s] Sorting trace points... [2.209s] Computing alignments... [91.845s] Deallocating buffers... [0.057s] Loading trace points... [0.062s] Sorting trace points... [2.655s] Computing alignments... [89.509s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [2.033s] Computing alignments... [92.058s] Deallocating buffers... [0.054s] Loading trace points... [0s] [1489.25s] Deallocating reference... [0.074s] Loading reference sequences... [34.566s] Masking reference... [31.593s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.3s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.365s] Building query seed array... [2.178s] Computing hash join... [4.975s] Masking low complexity seeds... [0.191s] Searching alignments... [707.138s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.673s] Building query seed array... [2.46s] Computing hash join... [4.906s] Masking low complexity seeds... [0.184s] Searching alignments... [303.412s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.647s] Building query seed array... [2.551s] Computing hash join... [4.916s] Masking low complexity seeds... [0.184s] Searching alignments... [225.233s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.041s] Building query seed array... [2.088s] Computing hash join... [4.936s] Masking low complexity seeds... [0.19s] Searching alignments... [220.839s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.155s] Building query seed array... [1.951s] Computing hash join... [4.778s] Masking low complexity seeds... [0.177s] Searching alignments... [332.594s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.517s] Building query seed array... [2.209s] Computing hash join... [4.785s] Masking low complexity seeds... [0.18s] Searching alignments... [257.88s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.211s] Building query seed array... [2.362s] Computing hash join... [4.782s] Masking low complexity seeds... [0.173s] Searching alignments... [187.958s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [1.932s] Computing hash join... [4.869s] Masking low complexity seeds... [0.177s] Searching alignments... [191.774s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [1.555s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.168s] Sorting trace points... [2.645s] Computing alignments... [87.055s] Deallocating buffers... [0.05s] Loading trace points... [0.077s] Sorting trace points... [2.79s] Computing alignments... [91.978s] Deallocating buffers... [0.048s] Loading trace points... [0.074s] Sorting trace points... [2.08s] Computing alignments... [89.401s] Deallocating buffers... [0.055s] Loading trace points... [0.001s] Sorting trace points... [2.695s] Computing alignments... [92.355s] Deallocating buffers... [0.051s] Loading trace points... [0.083s] Sorting trace points... [2.75s] Computing alignments... [90.014s] Deallocating buffers... [0.057s] Loading trace points... [0.003s] Sorting trace points... [2.801s] Computing alignments... [86.628s] Deallocating buffers... [0.056s] Loading trace points... [0.073s] Sorting trace points... [2.378s] Computing alignments... [89.856s] Deallocating buffers... [0.054s] Loading trace points... [0.039s] Sorting trace points... [2.761s] Computing alignments... [91.204s] Deallocating buffers... [0.059s] Loading trace points... [0.123s] Sorting trace points... [2.674s] Computing alignments... [89.303s] Deallocating buffers... [0.047s] Loading trace points... [0.06s] Sorting trace points... [2.617s] Computing alignments... [90.394s] Deallocating buffers... [0.058s] Loading trace points... [0.001s] Sorting trace points... [2.709s] Computing alignments... [90.608s] Deallocating buffers... [0.06s] Loading trace points... [0.596s] Sorting trace points... [2.893s] Computing alignments... [91.561s] Deallocating buffers... [0.052s] Loading trace points... [0.068s] Sorting trace points... [2.111s] Computing alignments... [89.91s] Deallocating buffers... [0.051s] Loading trace points... [0.085s] Sorting trace points... [2.207s] Computing alignments... [91.84s] Deallocating buffers... [0.05s] Loading trace points... [0.072s] Sorting trace points... [2.107s] Computing alignments... [89.325s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [2.516s] Computing alignments... [93.41s] Deallocating buffers... [0.054s] Loading trace points... [0s] [1502.06s] Deallocating reference... [0.071s] Loading reference sequences... [34.736s] Masking reference... [31.047s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [33.099s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.51s] Building query seed array... [2.136s] Computing hash join... [4.869s] Masking low complexity seeds... [0.182s] Searching alignments... [714.513s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.517s] Building query seed array... [2.498s] Computing hash join... [4.926s] Masking low complexity seeds... [0.192s] Searching alignments... [304.291s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.545s] Building query seed array... [2.496s] Computing hash join... [4.829s] Masking low complexity seeds... [0.196s] Searching alignments... [226.751s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.907s] Building query seed array... [2.082s] Computing hash join... [4.868s] Masking low complexity seeds... [0.187s] Searching alignments... [222.944s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.104s] Building query seed array... [1.963s] Computing hash join... [4.829s] Masking low complexity seeds... [0.178s] Searching alignments... [337.504s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.322s] Building query seed array... [2.24s] Computing hash join... [4.832s] Masking low complexity seeds... [0.178s] Searching alignments... [257.401s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.252s] Building query seed array... [2.349s] Computing hash join... [4.742s] Masking low complexity seeds... [0.185s] Searching alignments... [187.037s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.896s] Building query seed array... [1.984s] Computing hash join... [4.783s] Masking low complexity seeds... [0.181s] Searching alignments... [192.94s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.506s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.096s] Sorting trace points... [2.773s] Computing alignments... [82.986s] Deallocating buffers... [0.049s] Loading trace points... [0.061s] Sorting trace points... [1.978s] Computing alignments... [87.536s] Deallocating buffers... [0.056s] Loading trace points... [0.083s] Sorting trace points... [2.504s] Computing alignments... [85.713s] Deallocating buffers... [0.055s] Loading trace points... [0.108s] Sorting trace points... [2.815s] Computing alignments... [88.186s] Deallocating buffers... [0.058s] Loading trace points... [0.071s] Sorting trace points... [2.741s] Computing alignments... [85.218s] Deallocating buffers... [0.056s] Loading trace points... [0.08s] Sorting trace points... [2.639s] Computing alignments... [82.85s] Deallocating buffers... [0.055s] Loading trace points... [0.08s] Sorting trace points... [2.327s] Computing alignments... [86.38s] Deallocating buffers... [0.054s] Loading trace points... [0.087s] Sorting trace points... [2.707s] Computing alignments... [87.017s] Deallocating buffers... [0.063s] Loading trace points... [0.064s] Sorting trace points... [2.564s] Computing alignments... [84.369s] Deallocating buffers... [0.055s] Loading trace points... [0.094s] Sorting trace points... [2.122s] Computing alignments... [86.734s] Deallocating buffers... [0.053s] Loading trace points... [0.066s] Sorting trace points... [2.75s] Computing alignments... [87.151s] Deallocating buffers... [0.036s] Loading trace points... [0.085s] Sorting trace points... [2.276s] Computing alignments... [87.534s] Deallocating buffers... [0.056s] Loading trace points... [0.114s] Sorting trace points... [2.987s] Computing alignments... [85.696s] Deallocating buffers... [0.034s] Loading trace points... [0.15s] Sorting trace points... [1.957s] Computing alignments... [87.994s] Deallocating buffers... [0.05s] Loading trace points... [0.071s] Sorting trace points... [1.986s] Computing alignments... [85.751s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [2.696s] Computing alignments... [88.744s] Deallocating buffers... [0.054s] Loading trace points... [0s] [1435.94s] Deallocating reference... [0.071s] Loading reference sequences... [29.681s] Masking reference... [30.861s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.634s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.555s] Building query seed array... [2.173s] Computing hash join... [4.923s] Masking low complexity seeds... [0.181s] Searching alignments... [718.082s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.464s] Building query seed array... [2.475s] Computing hash join... [4.91s] Masking low complexity seeds... [0.19s] Searching alignments... [302.109s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.733s] Building query seed array... [2.552s] Computing hash join... [4.886s] Masking low complexity seeds... [0.187s] Searching alignments... [229.335s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.519s] Building query seed array... [2.086s] Computing hash join... [4.832s] Masking low complexity seeds... [0.189s] Searching alignments... [226.664s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.972s] Building query seed array... [1.937s] Computing hash join... [4.875s] Masking low complexity seeds... [0.18s] Searching alignments... [348.879s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.396s] Building query seed array... [2.177s] Computing hash join... [4.821s] Masking low complexity seeds... [0.179s] Searching alignments... [264.744s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.234s] Building query seed array... [2.363s] Computing hash join... [4.858s] Masking low complexity seeds... [0.189s] Searching alignments... [186.241s] Deallocating memory... [0.013s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.776s] Building query seed array... [1.965s] Computing hash join... [4.774s] Masking low complexity seeds... [0.173s] Searching alignments... [197.083s] Deallocating memory... [0s] Deallocating buffers... [0.128s] Clearing query masking... [1.414s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.982s] Sorting trace points... [2.646s] Computing alignments... [84.773s] Deallocating buffers... [0.054s] Loading trace points... [0.093s] Sorting trace points... [2.486s] Computing alignments... [88.494s] Deallocating buffers... [0.059s] Loading trace points... [0.064s] Sorting trace points... [2.183s] Computing alignments... [87.689s] Deallocating buffers... [0.06s] Loading trace points... [0.047s] Sorting trace points... [2.446s] Computing alignments... [89.542s] Deallocating buffers... [0.052s] Loading trace points... [0.112s] Sorting trace points... [2.06s] Computing alignments... [87.216s] Deallocating buffers... [0.062s] Loading trace points... [0.042s] Sorting trace points... [2.008s] Computing alignments... [84.292s] Deallocating buffers... [0.058s] Loading trace points... [0.068s] Sorting trace points... [2.237s] Computing alignments... [87.333s] Deallocating buffers... [0.07s] Loading trace points... [0.052s] Sorting trace points... [2.891s] Computing alignments... [88.081s] Deallocating buffers... [0.062s] Loading trace points... [0.002s] Sorting trace points... [2.051s] Computing alignments... [85.811s] Deallocating buffers... [0.061s] Loading trace points... [0.071s] Sorting trace points... [2.437s] Computing alignments... [87.542s] Deallocating buffers... [0.067s] Loading trace points... [0.066s] Sorting trace points... [2.518s] Computing alignments... [88.288s] Deallocating buffers... [0.051s] Loading trace points... [0.08s] Sorting trace points... [2.505s] Computing alignments... [88.058s] Deallocating buffers... [0.06s] Loading trace points... [0.073s] Sorting trace points... [2.568s] Computing alignments... [86.205s] Deallocating buffers... [0.059s] Loading trace points... [0s] Sorting trace points... [2.671s] Computing alignments... [89.994s] Deallocating buffers... [0.06s] Loading trace points... [0.087s] Sorting trace points... [2.664s] Computing alignments... [86.905s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [2.75s] Computing alignments... [90.329s] Deallocating buffers... [0.055s] Loading trace points... [0s] [1456.29s] Deallocating reference... [0.074s] Loading reference sequences... [29.485s] Masking reference... [30.859s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.332s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.316s] Building query seed array... [2.165s] Computing hash join... [5.001s] Masking low complexity seeds... [0.188s] Searching alignments... [709.995s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.253s] Building query seed array... [2.482s] Computing hash join... [4.931s] Masking low complexity seeds... [0.193s] Searching alignments... [308.528s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.867s] Building query seed array... [2.623s] Computing hash join... [4.984s] Masking low complexity seeds... [0.2s] Searching alignments... [226.215s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.998s] Building query seed array... [2.109s] Computing hash join... [4.921s] Masking low complexity seeds... [0.184s] Searching alignments... [225.079s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.01s] Building query seed array... [1.948s] Computing hash join... [4.837s] Masking low complexity seeds... [0.181s] Searching alignments... [334.453s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.453s] Building query seed array... [2.204s] Computing hash join... [4.717s] Masking low complexity seeds... [0.169s] Searching alignments... [268.439s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.363s] Building query seed array... [2.313s] Computing hash join... [4.653s] Masking low complexity seeds... [0.171s] Searching alignments... [187.495s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.113s] Building query seed array... [1.969s] Computing hash join... [5.663s] Masking low complexity seeds... [0.194s] Searching alignments... [196.184s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.448s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.034s] Sorting trace points... [2.617s] Computing alignments... [76.55s] Deallocating buffers... [0.034s] Loading trace points... [0.07s] Sorting trace points... [2.787s] Computing alignments... [79.427s] Deallocating buffers... [0.05s] Loading trace points... [0.095s] Sorting trace points... [2.714s] Computing alignments... [78.65s] Deallocating buffers... [0.04s] Loading trace points... [0.001s] Sorting trace points... [2.596s] Computing alignments... [81.083s] Deallocating buffers... [0.051s] Loading trace points... [0.063s] Sorting trace points... [2.738s] Computing alignments... [77.398s] Deallocating buffers... [0.052s] Loading trace points... [0s] Sorting trace points... [2.635s] Computing alignments... [76.598s] Deallocating buffers... [0.046s] Loading trace points... [0.073s] Sorting trace points... [2.756s] Computing alignments... [78.405s] Deallocating buffers... [0.048s] Loading trace points... [0.002s] Sorting trace points... [2.376s] Computing alignments... [79.667s] Deallocating buffers... [0.047s] Loading trace points... [0.066s] Sorting trace points... [2.658s] Computing alignments... [77.353s] Deallocating buffers... [0.049s] Loading trace points... [0.056s] Sorting trace points... [2.736s] Computing alignments... [78.892s] Deallocating buffers... [0.057s] Loading trace points... [0.082s] Sorting trace points... [2.78s] Computing alignments... [79.568s] Deallocating buffers... [0.056s] Loading trace points... [0.07s] Sorting trace points... [2.359s] Computing alignments... [80.507s] Deallocating buffers... [0.06s] Loading trace points... [0.071s] Sorting trace points... [2.465s] Computing alignments... [78.182s] Deallocating buffers... [0.045s] Loading trace points... [0.072s] Sorting trace points... [2.246s] Computing alignments... [80.125s] Deallocating buffers... [0.051s] Loading trace points... [0.076s] Sorting trace points... [2.855s] Computing alignments... [78.966s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [2.764s] Computing alignments... [81.018s] Deallocating buffers... [0.05s] Loading trace points... [0s] [1320.18s] Deallocating reference... [0.073s] Loading reference sequences... [33.353s] Masking reference... [31.826s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.732s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.234s] Building query seed array... [2.15s] Computing hash join... [4.961s] Masking low complexity seeds... [0.181s] Searching alignments... [705.774s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.106s] Building query seed array... [2.421s] Computing hash join... [4.916s] Masking low complexity seeds... [0.191s] Searching alignments... [306.486s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.775s] Building query seed array... [2.61s] Computing hash join... [4.881s] Masking low complexity seeds... [0.192s] Searching alignments... [228.794s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.34s] Building query seed array... [2.09s] Computing hash join... [4.891s] Masking low complexity seeds... [0.186s] Searching alignments... [229.618s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.967s] Building query seed array... [1.969s] Computing hash join... [4.744s] Masking low complexity seeds... [0.172s] Searching alignments... [336.559s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.454s] Building query seed array... [2.239s] Computing hash join... [4.652s] Masking low complexity seeds... [0.179s] Searching alignments... [259.56s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.319s] Building query seed array... [2.383s] Computing hash join... [4.796s] Masking low complexity seeds... [0.185s] Searching alignments... [186.171s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.961s] Building query seed array... [1.971s] Computing hash join... [4.769s] Masking low complexity seeds... [0.171s] Searching alignments... [205.075s] Deallocating memory... [0s] Deallocating buffers... [0.132s] Clearing query masking... [1.366s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.003s] Sorting trace points... [2.777s] Computing alignments... [91.442s] Deallocating buffers... [0.054s] Loading trace points... [0.001s] Sorting trace points... [2.242s] Computing alignments... [96.529s] Deallocating buffers... [0.058s] Loading trace points... [0.07s] Sorting trace points... [2.324s] Computing alignments... [94.513s] Deallocating buffers... [0.063s] Loading trace points... [0.054s] Sorting trace points... [2.657s] Computing alignments... [97.302s] Deallocating buffers... [0.058s] Loading trace points... [0.044s] Sorting trace points... [2.533s] Computing alignments... [94.1s] Deallocating buffers... [0.057s] Loading trace points... [0.085s] Sorting trace points... [1.989s] Computing alignments... [91.75s] Deallocating buffers... [0.049s] Loading trace points... [0.068s] Sorting trace points... [2.75s] Computing alignments... [95.214s] Deallocating buffers... [0.051s] Loading trace points... [0.057s] Sorting trace points... [2.683s] Computing alignments... [95.637s] Deallocating buffers... [0.061s] Loading trace points... [0.067s] Sorting trace points... [2.69s] Computing alignments... [93.003s] Deallocating buffers... [0.056s] Loading trace points... [0.063s] Sorting trace points... [2.807s] Computing alignments... [95.022s] Deallocating buffers... [0.056s] Loading trace points... [0.073s] Sorting trace points... [2.882s] Computing alignments... [95.927s] Deallocating buffers... [0.067s] Loading trace points... [0.058s] Sorting trace points... [2.507s] Computing alignments... [95.641s] Deallocating buffers... [0.064s] Loading trace points... [0.068s] Sorting trace points... [2.605s] Computing alignments... [93.626s] Deallocating buffers... [0.063s] Loading trace points... [0.053s] Sorting trace points... [2.304s] Computing alignments... [96.902s] Deallocating buffers... [0.067s] Loading trace points... [0.046s] Sorting trace points... [2.744s] Computing alignments... [95.281s] Deallocating buffers... [0.063s] Loading trace points... [0s] Sorting trace points... [2.476s] Computing alignments... [98.916s] Deallocating buffers... [0.058s] Loading trace points... [0s] [1577.67s] Deallocating reference... [0.078s] Loading reference sequences... [249.64s] Masking reference... [31.361s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.424s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.501s] Building query seed array... [2.202s] Computing hash join... [4.863s] Masking low complexity seeds... [0.188s] Searching alignments... [713.01s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.01s] Building query seed array... [2.462s] Computing hash join... [4.873s] Masking low complexity seeds... [0.185s] Searching alignments... [305.718s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.029s] Building query seed array... [2.552s] Computing hash join... [4.896s] Masking low complexity seeds... [0.196s] Searching alignments... [226.651s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.212s] Building query seed array... [2.09s] Computing hash join... [4.923s] Masking low complexity seeds... [0.197s] Searching alignments... [227.767s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.023s] Building query seed array... [1.924s] Computing hash join... [4.839s] Masking low complexity seeds... [0.182s] Searching alignments... [333.842s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.543s] Building query seed array... [2.241s] Computing hash join... [4.701s] Masking low complexity seeds... [0.174s] Searching alignments... [261.674s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.214s] Building query seed array... [2.291s] Computing hash join... [4.791s] Masking low complexity seeds... [0.18s] Searching alignments... [190.862s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.163s] Building query seed array... [1.989s] Computing hash join... [4.715s] Masking low complexity seeds... [0.176s] Searching alignments... [198.766s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.478s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.049s] Sorting trace points... [2.745s] Computing alignments... [89.071s] Deallocating buffers... [0.057s] Loading trace points... [0.058s] Sorting trace points... [2.263s] Computing alignments... [92.455s] Deallocating buffers... [0.064s] Loading trace points... [0.053s] Sorting trace points... [2.572s] Computing alignments... [91.923s] Deallocating buffers... [0.063s] Loading trace points... [0.084s] Sorting trace points... [2.879s] Computing alignments... [94.004s] Deallocating buffers... [0.07s] Loading trace points... [0.067s] Sorting trace points... [2.548s] Computing alignments... [90.645s] Deallocating buffers... [0.057s] Loading trace points... [0.09s] Sorting trace points... [2.79s] Computing alignments... [88.881s] Deallocating buffers... [0.062s] Loading trace points... [0.063s] Sorting trace points... [2.511s] Computing alignments... [92.145s] Deallocating buffers... [0.049s] Loading trace points... [0.061s] Sorting trace points... [2.432s] Computing alignments... [92.889s] Deallocating buffers... [0.071s] Loading trace points... [0.065s] Sorting trace points... [2.761s] Computing alignments... [91.107s] Deallocating buffers... [0.055s] Loading trace points... [0.091s] Sorting trace points... [2.672s] Computing alignments... [91.622s] Deallocating buffers... [0.056s] Loading trace points... [0.07s] Sorting trace points... [2.832s] Computing alignments... [92.507s] Deallocating buffers... [0.057s] Loading trace points... [0.081s] Sorting trace points... [2.883s] Computing alignments... [92.612s] Deallocating buffers... [0.051s] Loading trace points... [0.049s] Sorting trace points... [2.833s] Computing alignments... [91.197s] Deallocating buffers... [0.068s] Loading trace points... [0.064s] Sorting trace points... [2.83s] Computing alignments... [93.86s] Deallocating buffers... [0.062s] Loading trace points... [0.06s] Sorting trace points... [2.426s] Computing alignments... [91.678s] Deallocating buffers... [0.063s] Loading trace points... [0s] Sorting trace points... [2.923s] Computing alignments... [95.564s] Deallocating buffers... [0.055s] Loading trace points... [0s] [1531.16s] Deallocating reference... [0.06s] Loading reference sequences... [35.437s] Masking reference... [30.925s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [31.978s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.885s] Building query seed array... [2.256s] Computing hash join... [4.899s] Masking low complexity seeds... [0.206s] Searching alignments... [710.544s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.459s] Building query seed array... [2.452s] Computing hash join... [4.928s] Masking low complexity seeds... [0.191s] Searching alignments... [301.489s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.546s] Building query seed array... [2.554s] Computing hash join... [5.04s] Masking low complexity seeds... [0.194s] Searching alignments... [227.864s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.267s] Building query seed array... [2.136s] Computing hash join... [4.926s] Masking low complexity seeds... [0.19s] Searching alignments... [223.793s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.751s] Building query seed array... [1.947s] Computing hash join... [4.823s] Masking low complexity seeds... [0.185s] Searching alignments... [334.94s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.18s] Building query seed array... [2.262s] Computing hash join... [4.704s] Masking low complexity seeds... [0.172s] Searching alignments... [255.526s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.975s] Building query seed array... [2.332s] Computing hash join... [4.827s] Masking low complexity seeds... [0.18s] Searching alignments... [186.688s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.082s] Building query seed array... [1.966s] Computing hash join... [4.674s] Masking low complexity seeds... [0.187s] Searching alignments... [193.342s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [1.455s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.085s] Sorting trace points... [2.746s] Computing alignments... [83.787s] Deallocating buffers... [0.056s] Loading trace points... [0.057s] Sorting trace points... [1.977s] Computing alignments... [87.47s] Deallocating buffers... [0.038s] Loading trace points... [0.075s] Sorting trace points... [2.015s] Computing alignments... [85.984s] Deallocating buffers... [0.055s] Loading trace points... [0.067s] Sorting trace points... [2.892s] Computing alignments... [88.335s] Deallocating buffers... [0.058s] Loading trace points... [0.076s] Sorting trace points... [2.572s] Computing alignments... [85.132s] Deallocating buffers... [0.05s] Loading trace points... [0.05s] Sorting trace points... [2.765s] Computing alignments... [83.585s] Deallocating buffers... [0.048s] Loading trace points... [0.055s] Sorting trace points... [2.057s] Computing alignments... [85.807s] Deallocating buffers... [0.052s] Loading trace points... [0.049s] Sorting trace points... [2.182s] Computing alignments... [86.865s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [2.693s] Computing alignments... [85.31s] Deallocating buffers... [0.048s] Loading trace points... [0.049s] Sorting trace points... [2.811s] Computing alignments... [86.478s] Deallocating buffers... [0.06s] Loading trace points... [0.044s] Sorting trace points... [2.639s] Computing alignments... [86.869s] Deallocating buffers... [0.051s] Loading trace points... [0.001s] Sorting trace points... [2.811s] Computing alignments... [87.308s] Deallocating buffers... [0.048s] Loading trace points... [0.06s] Sorting trace points... [2.723s] Computing alignments... [85.372s] Deallocating buffers... [0.048s] Loading trace points... [0.075s] Sorting trace points... [2.649s] Computing alignments... [87.801s] Deallocating buffers... [0.048s] Loading trace points... [0.063s] Sorting trace points... [2.754s] Computing alignments... [86.07s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [2.747s] Computing alignments... [88.939s] Deallocating buffers... [0.059s] Loading trace points... [0s] [1437.91s] Deallocating reference... [0.069s] Loading reference sequences... [23.598s] Masking reference... [24.997s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [26.922s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.529s] Building query seed array... [2.188s] Computing hash join... [4.042s] Masking low complexity seeds... [0.181s] Searching alignments... [571.889s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.163s] Building query seed array... [2.444s] Computing hash join... [4.058s] Masking low complexity seeds... [0.181s] Searching alignments... [245.502s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.633s] Building query seed array... [2.485s] Computing hash join... [4.078s] Masking low complexity seeds... [0.181s] Searching alignments... [178.833s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.214s] Building query seed array... [2.089s] Computing hash join... [4.117s] Masking low complexity seeds... [0.177s] Searching alignments... [182.635s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.166s] Building query seed array... [1.93s] Computing hash join... [3.914s] Masking low complexity seeds... [0.166s] Searching alignments... [279.602s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.962s] Building query seed array... [2.227s] Computing hash join... [3.892s] Masking low complexity seeds... [0.171s] Searching alignments... [206.058s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.086s] Building query seed array... [2.342s] Computing hash join... [3.968s] Masking low complexity seeds... [0.175s] Searching alignments... [150.917s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.257s] Building query seed array... [1.994s] Computing hash join... [3.953s] Masking low complexity seeds... [0.163s] Searching alignments... [158.19s] Deallocating memory... [0s] Deallocating buffers... [0.119s] Clearing query masking... [1.496s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.527s] Sorting trace points... [2.357s] Computing alignments... [64.938s] Deallocating buffers... [0.045s] Loading trace points... [0.13s] Sorting trace points... [1.994s] Computing alignments... [67.715s] Deallocating buffers... [0.039s] Loading trace points... [0.154s] Sorting trace points... [2.039s] Computing alignments... [67.114s] Deallocating buffers... [0.04s] Loading trace points... [0.059s] Sorting trace points... [1.749s] Computing alignments... [68.856s] Deallocating buffers... [0.042s] Loading trace points... [0.081s] Sorting trace points... [1.759s] Computing alignments... [66.439s] Deallocating buffers... [0.038s] Loading trace points... [0.055s] Sorting trace points... [1.711s] Computing alignments... [65.046s] Deallocating buffers... [0.043s] Loading trace points... [0.191s] Sorting trace points... [1.817s] Computing alignments... [67.659s] Deallocating buffers... [0.043s] Loading trace points... [0.07s] Sorting trace points... [2.244s] Computing alignments... [67.879s] Deallocating buffers... [0.046s] Loading trace points... [0.053s] Sorting trace points... [2.237s] Computing alignments... [66.354s] Deallocating buffers... [0.039s] Loading trace points... [0.055s] Sorting trace points... [1.74s] Computing alignments... [67.328s] Deallocating buffers... [0.044s] Loading trace points... [0.064s] Sorting trace points... [2.353s] Computing alignments... [68.023s] Deallocating buffers... [0.04s] Loading trace points... [0.048s] Sorting trace points... [1.959s] Computing alignments... [67.777s] Deallocating buffers... [0.046s] Loading trace points... [0.065s] Sorting trace points... [2.191s] Computing alignments... [66.73s] Deallocating buffers... [0.04s] Loading trace points... [0.001s] Sorting trace points... [2.12s] Computing alignments... [68.594s] Deallocating buffers... [0.046s] Loading trace points... [0.06s] Sorting trace points... [2.279s] Computing alignments... [66.96s] Deallocating buffers... [0.046s] Loading trace points... [0s] Sorting trace points... [2.207s] Computing alignments... [69.374s] Deallocating buffers... [0.047s] Loading trace points... [0s] [1122.95s] Deallocating reference... [0.056s] Loading reference sequences... [0.083s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [4878.44s] [4878.44s] Deallocating queries... [0.057s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.126s] [4.711s] Closing the database... [0s] Cleaning up... [0s] Total time = 63144.5s Reported 5809215200 pairwise alignments, 5809215200 HSPs. 5278696 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R1.fastq.gz complete: CH07-06.trimmed.R1.blastx.meganized.daa Now MEGANizing CH07-06.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-06.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (209.2s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9,263.0s) Total reads: 5,278,696 With hits: 5,278,696 Alignments: 3,954,294,940 Assig. Taxonomy: 3,073,076 Assig. SEED: 136,255 Assig. EGGNOG: 65,672 Assig. GTDB: 347,080 Assig. EC: 503,528 Assig. INTERPRO2GO: 1,399,367 MinSupport set to: 2639 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 5,893 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (23.2s) Min-supp. changes: 3,970 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.8s) Binning reads Syncing 100% (0.5s) Class. Taxonomy: 160 Class. SEED: 494 Class. EGGNOG: 1,720 Class. GTDB: 60 Class. EC: 2,367 Class. INTERPRO2GO: 8,767 Total time: 9,516s Peak memory: 47.1 of 195.3G MEGANization of CH07-06.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R2.fastq.gz... 8b977eafb61d9c99f69b99e8ae5fafcc /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.323s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.733s] Opening the output file... [1.931s] Loading query sequences... [88.596s] Masking queries... [24.64s] Algorithm: Double-indexed Building query histograms... [18.693s] Loading reference sequences... [29.573s] Masking reference... [31.075s] Initializing dictionary... [1.031s] Initializing temporary storage... [0.012s] Building reference histograms... [33.469s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.333s] Building query seed array... [2.187s] Computing hash join... [5.093s] Masking low complexity seeds... [0.185s] Searching alignments... [750.715s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.766s] Building query seed array... [2.437s] Computing hash join... [4.941s] Masking low complexity seeds... [0.187s] Searching alignments... [306.534s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.154s] Building query seed array... [2.502s] Computing hash join... [4.856s] Masking low complexity seeds... [0.174s] Searching alignments... [232.691s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.262s] Building query seed array... [2.1s] Computing hash join... [4.956s] Masking low complexity seeds... [0.183s] Searching alignments... [231.781s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.711s] Building query seed array... [1.932s] Computing hash join... [4.724s] Masking low complexity seeds... [0.17s] Searching alignments... [360.265s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.559s] Building query seed array... [2.25s] Computing hash join... [4.696s] Masking low complexity seeds... [0.161s] Searching alignments... [265.999s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.183s] Building query seed array... [2.287s] Computing hash join... [4.704s] Masking low complexity seeds... [0.177s] Searching alignments... [196.612s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.835s] Building query seed array... [1.962s] Computing hash join... [4.802s] Masking low complexity seeds... [0.17s] Searching alignments... [209.455s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.491s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [14.476s] Sorting trace points... [2.737s] Computing alignments... [86.259s] Deallocating buffers... [0.048s] Loading trace points... [0.095s] Sorting trace points... [2.436s] Computing alignments... [87.456s] Deallocating buffers... [0.059s] Loading trace points... [0.001s] Sorting trace points... [2.774s] Computing alignments... [84.688s] Deallocating buffers... [0.049s] Loading trace points... [0.074s] Sorting trace points... [2.898s] Computing alignments... [87.493s] Deallocating buffers... [0.053s] Loading trace points... [0.064s] Sorting trace points... [2.57s] Computing alignments... [86.581s] Deallocating buffers... [0.051s] Loading trace points... [0.118s] Sorting trace points... [2.683s] Computing alignments... [83.391s] Deallocating buffers... [0.058s] Loading trace points... [0.063s] Sorting trace points... [2.589s] Computing alignments... [84.711s] Deallocating buffers... [0.035s] Loading trace points... [0.074s] Sorting trace points... [2.554s] Computing alignments... [86.805s] Deallocating buffers... [0.051s] Loading trace points... [0.069s] Sorting trace points... [2.808s] Computing alignments... [85.518s] Deallocating buffers... [0.05s] Loading trace points... [0.081s] Sorting trace points... [2.8s] Computing alignments... [86.062s] Deallocating buffers... [0.051s] Loading trace points... [0.075s] Sorting trace points... [2.754s] Computing alignments... [87.417s] Deallocating buffers... [0.05s] Loading trace points... [0.059s] Sorting trace points... [2.15s] Computing alignments... [87.581s] Deallocating buffers... [0.053s] Loading trace points... [0.001s] Sorting trace points... [2.835s] Computing alignments... [85.794s] Deallocating buffers... [0.049s] Loading trace points... [0.059s] Sorting trace points... [2.817s] Computing alignments... [87.479s] Deallocating buffers... [0.057s] Loading trace points... [0.057s] Sorting trace points... [2.706s] Computing alignments... [84.135s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [2.739s] Computing alignments... [84.513s] Deallocating buffers... [0.053s] Loading trace points... [0s] [1435.04s] Deallocating reference... [0.074s] Loading reference sequences... [30.475s] Masking reference... [31.359s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.237s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.328s] Building query seed array... [2.169s] Computing hash join... [4.896s] Masking low complexity seeds... [0.181s] Searching alignments... [737.721s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.449s] Building query seed array... [2.421s] Computing hash join... [4.847s] Masking low complexity seeds... [0.185s] Searching alignments... [309.577s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.479s] Building query seed array... [2.557s] Computing hash join... [4.891s] Masking low complexity seeds... [0.182s] Searching alignments... [230.5s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.075s] Building query seed array... [2.133s] Computing hash join... [4.871s] Masking low complexity seeds... [0.19s] Searching alignments... [232.127s] Deallocating memory... [0.002s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.375s] Building query seed array... [1.931s] Computing hash join... [4.785s] Masking low complexity seeds... [0.173s] Searching alignments... [347.347s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.709s] Building query seed array... [2.222s] Computing hash join... [4.66s] Masking low complexity seeds... [0.167s] Searching alignments... [266.369s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.235s] Building query seed array... [2.297s] Computing hash join... [4.762s] Masking low complexity seeds... [0.171s] Searching alignments... [191.921s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.082s] Building query seed array... [1.934s] Computing hash join... [4.686s] Masking low complexity seeds... [0.166s] Searching alignments... [201.775s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.475s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.519s] Sorting trace points... [2.736s] Computing alignments... [91.405s] Deallocating buffers... [0.071s] Loading trace points... [0.071s] Sorting trace points... [2.798s] Computing alignments... [92.628s] Deallocating buffers... [0.072s] Loading trace points... [0.064s] Sorting trace points... [2.727s] Computing alignments... [89.999s] Deallocating buffers... [0.073s] Loading trace points... [0.038s] Sorting trace points... [2.988s] Computing alignments... [92.532s] Deallocating buffers... [0.069s] Loading trace points... [0.055s] Sorting trace points... [2.8s] Computing alignments... [92.159s] Deallocating buffers... [0.068s] Loading trace points... [0.078s] Sorting trace points... [2.074s] Computing alignments... [86.681s] Deallocating buffers... [0.072s] Loading trace points... [0.079s] Sorting trace points... [2.06s] Computing alignments... [88.595s] Deallocating buffers... [0.074s] Loading trace points... [0.002s] Sorting trace points... [2.463s] Computing alignments... [92.192s] Deallocating buffers... [0.061s] Loading trace points... [0.001s] Sorting trace points... [2.115s] Computing alignments... [90.845s] Deallocating buffers... [0.07s] Loading trace points... [0.076s] Sorting trace points... [2.478s] Computing alignments... [90.972s] Deallocating buffers... [0.067s] Loading trace points... [0.117s] Sorting trace points... [2.601s] Computing alignments... [92.085s] Deallocating buffers... [0.072s] Loading trace points... [0.039s] Sorting trace points... [2.106s] Computing alignments... [92.496s] Deallocating buffers... [0.067s] Loading trace points... [0.053s] Sorting trace points... [2.091s] Computing alignments... [91.405s] Deallocating buffers... [0.074s] Loading trace points... [0.082s] Sorting trace points... [2.378s] Computing alignments... [93.065s] Deallocating buffers... [0.065s] Loading trace points... [0.002s] Sorting trace points... [2.516s] Computing alignments... [87.444s] Deallocating buffers... [0.07s] Loading trace points... [0s] Sorting trace points... [2.138s] Computing alignments... [89.52s] Deallocating buffers... [0.073s] Loading trace points... [0s] [1509.53s] Deallocating reference... [0.088s] Loading reference sequences... [29.486s] Masking reference... [30.864s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [33.572s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.58s] Building query seed array... [2.074s] Computing hash join... [4.98s] Masking low complexity seeds... [0.182s] Searching alignments... [743.991s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.464s] Building query seed array... [2.43s] Computing hash join... [4.921s] Masking low complexity seeds... [0.182s] Searching alignments... [313.101s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.607s] Building query seed array... [2.549s] Computing hash join... [4.768s] Masking low complexity seeds... [0.182s] Searching alignments... [234.155s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.128s] Building query seed array... [2.119s] Computing hash join... [4.844s] Masking low complexity seeds... [0.179s] Searching alignments... [227.825s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.144s] Building query seed array... [1.916s] Computing hash join... [4.665s] Masking low complexity seeds... [0.17s] Searching alignments... [354.178s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.553s] Building query seed array... [2.259s] Computing hash join... [4.638s] Masking low complexity seeds... [0.169s] Searching alignments... [268.943s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.24s] Building query seed array... [2.3s] Computing hash join... [4.703s] Masking low complexity seeds... [0.176s] Searching alignments... [196.741s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.012s] Building query seed array... [1.99s] Computing hash join... [4.763s] Masking low complexity seeds... [0.176s] Searching alignments... [201.371s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.451s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.284s] Sorting trace points... [2.767s] Computing alignments... [91.647s] Deallocating buffers... [0.07s] Loading trace points... [0.082s] Sorting trace points... [2.017s] Computing alignments... [92.566s] Deallocating buffers... [0.062s] Loading trace points... [0.1s] Sorting trace points... [2.049s] Computing alignments... [88.959s] Deallocating buffers... [0.053s] Loading trace points... [0.1s] Sorting trace points... [2.958s] Computing alignments... [91.974s] Deallocating buffers... [0.058s] Loading trace points... [0.178s] Sorting trace points... [2.683s] Computing alignments... [92.349s] Deallocating buffers... [0.076s] Loading trace points... [0.086s] Sorting trace points... [2.5s] Computing alignments... [87.454s] Deallocating buffers... [0.059s] Loading trace points... [0.056s] Sorting trace points... [2.042s] Computing alignments... [89.044s] Deallocating buffers... [0.065s] Loading trace points... [0.074s] Sorting trace points... [2.048s] Computing alignments... [92.428s] Deallocating buffers... [0.066s] Loading trace points... [0.071s] Sorting trace points... [2.313s] Computing alignments... [89.874s] Deallocating buffers... [0.071s] Loading trace points... [0.07s] Sorting trace points... [2.437s] Computing alignments... [90.731s] Deallocating buffers... [0.06s] Loading trace points... [0.65s] Sorting trace points... [2.766s] Computing alignments... [91.706s] Deallocating buffers... [0.067s] Loading trace points... [0.079s] Sorting trace points... [2.973s] Computing alignments... [91.686s] Deallocating buffers... [0.063s] Loading trace points... [0.097s] Sorting trace points... [2.692s] Computing alignments... [90.311s] Deallocating buffers... [0.063s] Loading trace points... [0.066s] Sorting trace points... [2.827s] Computing alignments... [92.22s] Deallocating buffers... [0.069s] Loading trace points... [0.068s] Sorting trace points... [2.08s] Computing alignments... [88.063s] Deallocating buffers... [0.075s] Loading trace points... [0s] Sorting trace points... [2.798s] Computing alignments... [89.448s] Deallocating buffers... [0.08s] Loading trace points... [0s] [1507.64s] Deallocating reference... [0.078s] Loading reference sequences... [30.776s] Masking reference... [30.885s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.503s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.531s] Building query seed array... [2.138s] Computing hash join... [5.123s] Masking low complexity seeds... [0.184s] Searching alignments... [752.3s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.561s] Building query seed array... [2.433s] Computing hash join... [4.856s] Masking low complexity seeds... [0.174s] Searching alignments... [316.712s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.859s] Building query seed array... [2.523s] Computing hash join... [4.794s] Masking low complexity seeds... [0.175s] Searching alignments... [233.034s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.236s] Building query seed array... [2.112s] Computing hash join... [4.955s] Masking low complexity seeds... [0.184s] Searching alignments... [230.037s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.121s] Building query seed array... [1.925s] Computing hash join... [4.787s] Masking low complexity seeds... [0.169s] Searching alignments... [361.127s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.452s] Building query seed array... [2.216s] Computing hash join... [4.714s] Masking low complexity seeds... [0.167s] Searching alignments... [269.104s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.469s] Building query seed array... [2.329s] Computing hash join... [4.731s] Masking low complexity seeds... [0.169s] Searching alignments... [195.532s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.158s] Building query seed array... [2.038s] Computing hash join... [4.704s] Masking low complexity seeds... [0.167s] Searching alignments... [206.731s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.475s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.606s] Sorting trace points... [2.152s] Computing alignments... [88.86s] Deallocating buffers... [0.053s] Loading trace points... [0.111s] Sorting trace points... [2.825s] Computing alignments... [90.883s] Deallocating buffers... [0.069s] Loading trace points... [0.099s] Sorting trace points... [2.672s] Computing alignments... [87.887s] Deallocating buffers... [0.06s] Loading trace points... [0.108s] Sorting trace points... [2.136s] Computing alignments... [90.529s] Deallocating buffers... [0.06s] Loading trace points... [0.075s] Sorting trace points... [2.586s] Computing alignments... [89.767s] Deallocating buffers... [0.053s] Loading trace points... [0.097s] Sorting trace points... [2.018s] Computing alignments... [85.235s] Deallocating buffers... [0.054s] Loading trace points... [0.287s] Sorting trace points... [2.747s] Computing alignments... [86.414s] Deallocating buffers... [0.058s] Loading trace points... [0.082s] Sorting trace points... [2.787s] Computing alignments... [89.088s] Deallocating buffers... [0.049s] Loading trace points... [0.063s] Sorting trace points... [2.088s] Computing alignments... [87.874s] Deallocating buffers... [0.054s] Loading trace points... [0.143s] Sorting trace points... [2.434s] Computing alignments... [89.323s] Deallocating buffers... [0.058s] Loading trace points... [0.052s] Sorting trace points... [2.775s] Computing alignments... [89.591s] Deallocating buffers... [0.054s] Loading trace points... [0.074s] Sorting trace points... [2.862s] Computing alignments... [90.104s] Deallocating buffers... [0.051s] Loading trace points... [0.08s] Sorting trace points... [2.084s] Computing alignments... [88.158s] Deallocating buffers... [0.057s] Loading trace points... [0.057s] Sorting trace points... [2.675s] Computing alignments... [90.251s] Deallocating buffers... [0.052s] Loading trace points... [0.073s] Sorting trace points... [2.731s] Computing alignments... [85.572s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [2.28s] Computing alignments... [87.14s] Deallocating buffers... [0.038s] Loading trace points... [0s] [1473.51s] Deallocating reference... [0.076s] Loading reference sequences... [243.693s] Masking reference... [30.995s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [34.019s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.382s] Building query seed array... [2.09s] Computing hash join... [4.844s] Masking low complexity seeds... [0.181s] Searching alignments... [736.077s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.455s] Building query seed array... [2.367s] Computing hash join... [4.97s] Masking low complexity seeds... [0.191s] Searching alignments... [308.791s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.659s] Building query seed array... [2.481s] Computing hash join... [4.899s] Masking low complexity seeds... [0.186s] Searching alignments... [233.907s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.897s] Building query seed array... [2.075s] Computing hash join... [4.938s] Masking low complexity seeds... [0.183s] Searching alignments... [235.925s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.202s] Building query seed array... [1.952s] Computing hash join... [4.812s] Masking low complexity seeds... [0.172s] Searching alignments... [344.697s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.24s] Building query seed array... [2.278s] Computing hash join... [4.695s] Masking low complexity seeds... [0.17s] Searching alignments... [268.059s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.876s] Building query seed array... [2.35s] Computing hash join... [4.819s] Masking low complexity seeds... [0.172s] Searching alignments... [194.136s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.122s] Building query seed array... [2.006s] Computing hash join... [4.72s] Masking low complexity seeds... [0.179s] Searching alignments... [200.331s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.492s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.57s] Sorting trace points... [2.874s] Computing alignments... [95.482s] Deallocating buffers... [0.072s] Loading trace points... [0.07s] Sorting trace points... [2.136s] Computing alignments... [96.448s] Deallocating buffers... [0.066s] Loading trace points... [0.085s] Sorting trace points... [2.051s] Computing alignments... [92.851s] Deallocating buffers... [0.071s] Loading trace points... [0.057s] Sorting trace points... [2.493s] Computing alignments... [95.066s] Deallocating buffers... [0.07s] Loading trace points... [0.063s] Sorting trace points... [2.581s] Computing alignments... [94.869s] Deallocating buffers... [0.06s] Loading trace points... [0.092s] Sorting trace points... [2.752s] Computing alignments... [90.746s] Deallocating buffers... [0.071s] Loading trace points... [0.052s] Sorting trace points... [2.042s] Computing alignments... [92.705s] Deallocating buffers... [0.055s] Loading trace points... [0.183s] Sorting trace points... [2.128s] Computing alignments... [95.137s] Deallocating buffers... [0.072s] Loading trace points... [0.063s] Sorting trace points... [2.306s] Computing alignments... [93.574s] Deallocating buffers... [0.07s] Loading trace points... [0.069s] Sorting trace points... [2.564s] Computing alignments... [94.182s] Deallocating buffers... [0.076s] Loading trace points... [0.048s] Sorting trace points... [2.067s] Computing alignments... [95.329s] Deallocating buffers... [0.073s] Loading trace points... [0.066s] Sorting trace points... [2.836s] Computing alignments... [94.247s] Deallocating buffers... [0.063s] Loading trace points... [0.093s] Sorting trace points... [2.661s] Computing alignments... [95.075s] Deallocating buffers... [0.065s] Loading trace points... [0.066s] Sorting trace points... [2.499s] Computing alignments... [96.18s] Deallocating buffers... [0.073s] Loading trace points... [0.072s] Sorting trace points... [2.566s] Computing alignments... [91.307s] Deallocating buffers... [0.069s] Loading trace points... [0s] Sorting trace points... [1.986s] Computing alignments... [93.156s] Deallocating buffers... [0.077s] Loading trace points... [0s] [1561.74s] Deallocating reference... [0.076s] Loading reference sequences... [249.217s] Masking reference... [31.133s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.347s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.318s] Building query seed array... [2.162s] Computing hash join... [5.015s] Masking low complexity seeds... [0.184s] Searching alignments... [737.858s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.274s] Building query seed array... [2.46s] Computing hash join... [4.909s] Masking low complexity seeds... [0.187s] Searching alignments... [314.183s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.387s] Building query seed array... [2.543s] Computing hash join... [4.918s] Masking low complexity seeds... [0.184s] Searching alignments... [229.005s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.006s] Building query seed array... [2.048s] Computing hash join... [4.892s] Masking low complexity seeds... [0.184s] Searching alignments... [233.476s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.28s] Building query seed array... [1.916s] Computing hash join... [4.65s] Masking low complexity seeds... [0.17s] Searching alignments... [341.418s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.213s] Building query seed array... [2.15s] Computing hash join... [4.771s] Masking low complexity seeds... [0.174s] Searching alignments... [275.074s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.681s] Building query seed array... [2.32s] Computing hash join... [4.753s] Masking low complexity seeds... [0.173s] Searching alignments... [192.306s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.848s] Building query seed array... [1.912s] Computing hash join... [4.719s] Masking low complexity seeds... [0.166s] Searching alignments... [206.095s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.46s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [14.496s] Sorting trace points... [2.932s] Computing alignments... [92.152s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [2.692s] Computing alignments... [93.02s] Deallocating buffers... [0.051s] Loading trace points... [0.043s] Sorting trace points... [2.727s] Computing alignments... [90.18s] Deallocating buffers... [0.061s] Loading trace points... [0.001s] Sorting trace points... [2.096s] Computing alignments... [92.65s] Deallocating buffers... [0.056s] Loading trace points... [0.121s] Sorting trace points... [2.487s] Computing alignments... [91.965s] Deallocating buffers... [0.057s] Loading trace points... [0.072s] Sorting trace points... [2.222s] Computing alignments... [89.166s] Deallocating buffers... [0.052s] Loading trace points... [0.081s] Sorting trace points... [2.8s] Computing alignments... [89.521s] Deallocating buffers... [0.049s] Loading trace points... [0.061s] Sorting trace points... [2.856s] Computing alignments... [93.039s] Deallocating buffers... [0.05s] Loading trace points... [0.067s] Sorting trace points... [2.711s] Computing alignments... [90.631s] Deallocating buffers... [0.058s] Loading trace points... [0.056s] Sorting trace points... [2.846s] Computing alignments... [91.561s] Deallocating buffers... [0.059s] Loading trace points... [0.087s] Sorting trace points... [2.863s] Computing alignments... [92.502s] Deallocating buffers... [0.052s] Loading trace points... [0.065s] Sorting trace points... [2.854s] Computing alignments... [91.882s] Deallocating buffers... [0.055s] Loading trace points... [0.052s] Sorting trace points... [2.179s] Computing alignments... [91.733s] Deallocating buffers... [0.052s] Loading trace points... [0.07s] Sorting trace points... [2.66s] Computing alignments... [92.909s] Deallocating buffers... [0.059s] Loading trace points... [0.092s] Sorting trace points... [2.824s] Computing alignments... [88.267s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [2.552s] Computing alignments... [90.179s] Deallocating buffers... [0.046s] Loading trace points... [0s] [1520.02s] Deallocating reference... [0.06s] Loading reference sequences... [33.804s] Masking reference... [31.167s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.755s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.398s] Building query seed array... [2.116s] Computing hash join... [4.831s] Masking low complexity seeds... [0.18s] Searching alignments... [744.848s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.314s] Building query seed array... [2.394s] Computing hash join... [4.911s] Masking low complexity seeds... [0.182s] Searching alignments... [308.511s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.361s] Building query seed array... [2.482s] Computing hash join... [4.902s] Masking low complexity seeds... [0.184s] Searching alignments... [235.668s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.456s] Building query seed array... [2.112s] Computing hash join... [4.876s] Masking low complexity seeds... [0.178s] Searching alignments... [232.955s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.122s] Building query seed array... [1.921s] Computing hash join... [4.717s] Masking low complexity seeds... [0.173s] Searching alignments... [351.933s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.046s] Building query seed array... [2.221s] Computing hash join... [4.64s] Masking low complexity seeds... [0.176s] Searching alignments... [269.43s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.315s] Building query seed array... [2.242s] Computing hash join... [4.721s] Masking low complexity seeds... [0.165s] Searching alignments... [194.321s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.966s] Building query seed array... [2.061s] Computing hash join... [4.688s] Masking low complexity seeds... [0.174s] Searching alignments... [202.417s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.494s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.343s] Sorting trace points... [2.81s] Computing alignments... [93.053s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [2.492s] Computing alignments... [93.388s] Deallocating buffers... [0.05s] Loading trace points... [0.051s] Sorting trace points... [2.873s] Computing alignments... [90.625s] Deallocating buffers... [0.06s] Loading trace points... [0.002s] Sorting trace points... [2.872s] Computing alignments... [93.157s] Deallocating buffers... [0.052s] Loading trace points... [0.137s] Sorting trace points... [2.662s] Computing alignments... [92.588s] Deallocating buffers... [0.051s] Loading trace points... [0.045s] Sorting trace points... [1.945s] Computing alignments... [89.528s] Deallocating buffers... [0.068s] Loading trace points... [1.154s] Sorting trace points... [2.041s] Computing alignments... [90.344s] Deallocating buffers... [0.057s] Loading trace points... [0.108s] Sorting trace points... [2.77s] Computing alignments... [93.977s] Deallocating buffers... [0.057s] Loading trace points... [0.078s] Sorting trace points... [2.066s] Computing alignments... [91.046s] Deallocating buffers... [0.055s] Loading trace points... [0.04s] Sorting trace points... [2.793s] Computing alignments... [92.323s] Deallocating buffers... [0.049s] Loading trace points... [0.066s] Sorting trace points... [2.33s] Computing alignments... [93.4s] Deallocating buffers... [0.053s] Loading trace points... [0.059s] Sorting trace points... [3.062s] Computing alignments... [92.091s] Deallocating buffers... [0.05s] Loading trace points... [0.059s] Sorting trace points... [2.505s] Computing alignments... [91.998s] Deallocating buffers... [0.057s] Loading trace points... [0.06s] Sorting trace points... [2.676s] Computing alignments... [93.475s] Deallocating buffers... [0.049s] Loading trace points... [0.076s] Sorting trace points... [2.108s] Computing alignments... [88.422s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [2.403s] Computing alignments... [91.127s] Deallocating buffers... [0.051s] Loading trace points... [0s] [1528.22s] Deallocating reference... [0.071s] Loading reference sequences... [29.642s] Masking reference... [30.877s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.138s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.595s] Building query seed array... [2.118s] Computing hash join... [5.005s] Masking low complexity seeds... [0.181s] Searching alignments... [732.28s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.327s] Building query seed array... [2.424s] Computing hash join... [4.863s] Masking low complexity seeds... [0.183s] Searching alignments... [309.074s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.357s] Building query seed array... [2.518s] Computing hash join... [4.931s] Masking low complexity seeds... [0.184s] Searching alignments... [233.179s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.238s] Building query seed array... [2.111s] Computing hash join... [4.889s] Masking low complexity seeds... [0.184s] Searching alignments... [230.932s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.673s] Building query seed array... [1.995s] Computing hash join... [4.734s] Masking low complexity seeds... [0.182s] Searching alignments... [342.723s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.604s] Building query seed array... [2.261s] Computing hash join... [4.691s] Masking low complexity seeds... [0.171s] Searching alignments... [266.948s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.387s] Building query seed array... [2.359s] Computing hash join... [4.742s] Masking low complexity seeds... [0.168s] Searching alignments... [194.157s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.656s] Building query seed array... [1.976s] Computing hash join... [4.749s] Masking low complexity seeds... [0.169s] Searching alignments... [200.49s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.489s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.27s] Sorting trace points... [2.718s] Computing alignments... [88.336s] Deallocating buffers... [0.045s] Loading trace points... [0.086s] Sorting trace points... [2.253s] Computing alignments... [90.029s] Deallocating buffers... [0.038s] Loading trace points... [0.135s] Sorting trace points... [2.731s] Computing alignments... [86.776s] Deallocating buffers... [0.05s] Loading trace points... [0.104s] Sorting trace points... [2.799s] Computing alignments... [89.276s] Deallocating buffers... [0.051s] Loading trace points... [0.066s] Sorting trace points... [2.796s] Computing alignments... [88.299s] Deallocating buffers... [0.057s] Loading trace points... [0.08s] Sorting trace points... [2.751s] Computing alignments... [85.034s] Deallocating buffers... [0.049s] Loading trace points... [0.063s] Sorting trace points... [2.593s] Computing alignments... [85.962s] Deallocating buffers... [0.049s] Loading trace points... [0.066s] Sorting trace points... [2.091s] Computing alignments... [88.685s] Deallocating buffers... [0.053s] Loading trace points... [0.062s] Sorting trace points... [2.101s] Computing alignments... [86.956s] Deallocating buffers... [0.052s] Loading trace points... [0.073s] Sorting trace points... [1.985s] Computing alignments... [88.198s] Deallocating buffers... [0.054s] Loading trace points... [0.059s] Sorting trace points... [2.864s] Computing alignments... [89.009s] Deallocating buffers... [0.049s] Loading trace points... [0.055s] Sorting trace points... [2.692s] Computing alignments... [88.76s] Deallocating buffers... [0.05s] Loading trace points... [0.646s] Sorting trace points... [2.743s] Computing alignments... [87.679s] Deallocating buffers... [0.047s] Loading trace points... [0.064s] Sorting trace points... [2.805s] Computing alignments... [90.033s] Deallocating buffers... [0.049s] Loading trace points... [0.063s] Sorting trace points... [2.383s] Computing alignments... [84.972s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [2.689s] Computing alignments... [86.833s] Deallocating buffers... [0.05s] Loading trace points... [0s] [1462.62s] Deallocating reference... [0.075s] Loading reference sequences... [34.906s] Masking reference... [30.868s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.315s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.263s] Building query seed array... [2.125s] Computing hash join... [4.892s] Masking low complexity seeds... [0.18s] Searching alignments... [744.891s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.295s] Building query seed array... [2.392s] Computing hash join... [4.841s] Masking low complexity seeds... [0.191s] Searching alignments... [319.632s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.977s] Building query seed array... [2.547s] Computing hash join... [4.9s] Masking low complexity seeds... [0.183s] Searching alignments... [231.823s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.985s] Building query seed array... [2.037s] Computing hash join... [4.831s] Masking low complexity seeds... [0.186s] Searching alignments... [232.767s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.07s] Building query seed array... [2.001s] Computing hash join... [4.79s] Masking low complexity seeds... [0.171s] Searching alignments... [362.847s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.487s] Building query seed array... [2.205s] Computing hash join... [4.673s] Masking low complexity seeds... [0.167s] Searching alignments... [272.242s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.469s] Building query seed array... [2.302s] Computing hash join... [4.731s] Masking low complexity seeds... [0.174s] Searching alignments... [197.335s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.908s] Building query seed array... [2.003s] Computing hash join... [4.693s] Masking low complexity seeds... [0.17s] Searching alignments... [201.847s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.373s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.628s] Sorting trace points... [2.766s] Computing alignments... [89.813s] Deallocating buffers... [0.063s] Loading trace points... [0.053s] Sorting trace points... [2.029s] Computing alignments... [91.092s] Deallocating buffers... [0.059s] Loading trace points... [0.063s] Sorting trace points... [2.46s] Computing alignments... [87.998s] Deallocating buffers... [0.062s] Loading trace points... [0.059s] Sorting trace points... [2.294s] Computing alignments... [90.039s] Deallocating buffers... [0.062s] Loading trace points... [0.046s] Sorting trace points... [2.754s] Computing alignments... [90.067s] Deallocating buffers... [0.063s] Loading trace points... [0.067s] Sorting trace points... [2.61s] Computing alignments... [85.434s] Deallocating buffers... [0.054s] Loading trace points... [0.094s] Sorting trace points... [2.651s] Computing alignments... [86.715s] Deallocating buffers... [0.056s] Loading trace points... [0.001s] Sorting trace points... [2.834s] Computing alignments... [90.396s] Deallocating buffers... [0.056s] Loading trace points... [0.078s] Sorting trace points... [2.74s] Computing alignments... [88.198s] Deallocating buffers... [0.058s] Loading trace points... [0.109s] Sorting trace points... [2.36s] Computing alignments... [89.472s] Deallocating buffers... [0.058s] Loading trace points... [0.085s] Sorting trace points... [2.17s] Computing alignments... [90.984s] Deallocating buffers... [0.059s] Loading trace points... [0.927s] Sorting trace points... [2.158s] Computing alignments... [89.307s] Deallocating buffers... [0.047s] Loading trace points... [0.047s] Sorting trace points... [2.149s] Computing alignments... [88.74s] Deallocating buffers... [0.059s] Loading trace points... [0.078s] Sorting trace points... [1.998s] Computing alignments... [91.408s] Deallocating buffers... [0.06s] Loading trace points... [0.076s] Sorting trace points... [2.284s] Computing alignments... [85.901s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [2.211s] Computing alignments... [87.9s] Deallocating buffers... [0.059s] Loading trace points... [0s] [1479.39s] Deallocating reference... [0.077s] Loading reference sequences... [29.587s] Masking reference... [31.511s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.492s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.218s] Building query seed array... [2.123s] Computing hash join... [4.977s] Masking low complexity seeds... [0.18s] Searching alignments... [735.828s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.341s] Building query seed array... [2.364s] Computing hash join... [4.924s] Masking low complexity seeds... [0.181s] Searching alignments... [311.844s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.748s] Building query seed array... [2.538s] Computing hash join... [4.838s] Masking low complexity seeds... [0.186s] Searching alignments... [231.827s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.078s] Building query seed array... [2.034s] Computing hash join... [4.85s] Masking low complexity seeds... [0.181s] Searching alignments... [229.266s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.937s] Building query seed array... [1.922s] Computing hash join... [4.658s] Masking low complexity seeds... [0.168s] Searching alignments... [348.979s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.444s] Building query seed array... [2.191s] Computing hash join... [4.679s] Masking low complexity seeds... [0.172s] Searching alignments... [272.939s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.257s] Building query seed array... [2.313s] Computing hash join... [4.684s] Masking low complexity seeds... [0.178s] Searching alignments... [192.133s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.907s] Building query seed array... [1.983s] Computing hash join... [4.787s] Masking low complexity seeds... [0.174s] Searching alignments... [205.428s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.45s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.374s] Sorting trace points... [2.815s] Computing alignments... [80.516s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [2.683s] Computing alignments... [81.34s] Deallocating buffers... [0.049s] Loading trace points... [0.044s] Sorting trace points... [2.257s] Computing alignments... [79.609s] Deallocating buffers... [0.051s] Loading trace points... [0.001s] Sorting trace points... [2.065s] Computing alignments... [82.147s] Deallocating buffers... [0.041s] Loading trace points... [0.094s] Sorting trace points... [2.543s] Computing alignments... [80.208s] Deallocating buffers... [0.05s] Loading trace points... [0.056s] Sorting trace points... [2.127s] Computing alignments... [78.523s] Deallocating buffers... [0.054s] Loading trace points... [0.087s] Sorting trace points... [2.777s] Computing alignments... [78.735s] Deallocating buffers... [0.057s] Loading trace points... [0.06s] Sorting trace points... [2.868s] Computing alignments... [81.417s] Deallocating buffers... [0.049s] Loading trace points... [0.075s] Sorting trace points... [2.803s] Computing alignments... [79.512s] Deallocating buffers... [0.049s] Loading trace points... [0.002s] Sorting trace points... [2.694s] Computing alignments... [80.509s] Deallocating buffers... [0.05s] Loading trace points... [0.06s] Sorting trace points... [2.726s] Computing alignments... [80.955s] Deallocating buffers... [0.058s] Loading trace points... [0.119s] Sorting trace points... [2.856s] Computing alignments... [81.691s] Deallocating buffers... [0.046s] Loading trace points... [0.075s] Sorting trace points... [2.763s] Computing alignments... [80.025s] Deallocating buffers... [0.057s] Loading trace points... [0.067s] Sorting trace points... [2.609s] Computing alignments... [82.163s] Deallocating buffers... [0.052s] Loading trace points... [0.081s] Sorting trace points... [2.812s] Computing alignments... [78.543s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [2.668s] Computing alignments... [79.518s] Deallocating buffers... [0.045s] Loading trace points... [0s] [1343.6s] Deallocating reference... [0.07s] Loading reference sequences... [29.622s] Masking reference... [30.944s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [33.827s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.332s] Building query seed array... [2.218s] Computing hash join... [4.908s] Masking low complexity seeds... [0.184s] Searching alignments... [738.128s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.644s] Building query seed array... [2.435s] Computing hash join... [4.894s] Masking low complexity seeds... [0.183s] Searching alignments... [309.719s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.921s] Building query seed array... [2.501s] Computing hash join... [4.846s] Masking low complexity seeds... [0.175s] Searching alignments... [229.423s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.992s] Building query seed array... [2.174s] Computing hash join... [4.838s] Masking low complexity seeds... [0.181s] Searching alignments... [230.77s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.985s] Building query seed array... [1.91s] Computing hash join... [4.697s] Masking low complexity seeds... [0.172s] Searching alignments... [356.785s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.181s] Building query seed array... [2.191s] Computing hash join... [4.81s] Masking low complexity seeds... [0.177s] Searching alignments... [265.661s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.401s] Building query seed array... [2.283s] Computing hash join... [4.669s] Masking low complexity seeds... [0.175s] Searching alignments... [194.216s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.852s] Building query seed array... [1.966s] Computing hash join... [4.678s] Masking low complexity seeds... [0.169s] Searching alignments... [202.043s] Deallocating memory... [0s] Deallocating buffers... [0.153s] Clearing query masking... [1.486s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.502s] Sorting trace points... [2.79s] Computing alignments... [98.06s] Deallocating buffers... [0.065s] Loading trace points... [0.051s] Sorting trace points... [2.754s] Computing alignments... [99.031s] Deallocating buffers... [0.06s] Loading trace points... [0.499s] Sorting trace points... [2.343s] Computing alignments... [94.833s] Deallocating buffers... [0.059s] Loading trace points... [0.073s] Sorting trace points... [2.603s] Computing alignments... [98.455s] Deallocating buffers... [0.061s] Loading trace points... [0.045s] Sorting trace points... [2.02s] Computing alignments... [97.157s] Deallocating buffers... [0.06s] Loading trace points... [0.074s] Sorting trace points... [2.294s] Computing alignments... [92.865s] Deallocating buffers... [0.054s] Loading trace points... [0.001s] Sorting trace points... [2.427s] Computing alignments... [95.135s] Deallocating buffers... [0.063s] Loading trace points... [0.069s] Sorting trace points... [2.233s] Computing alignments... [98.194s] Deallocating buffers... [0.062s] Loading trace points... [0.049s] Sorting trace points... [2.343s] Computing alignments... [96.159s] Deallocating buffers... [0.059s] Loading trace points... [0.049s] Sorting trace points... [2.276s] Computing alignments... [96.629s] Deallocating buffers... [0.063s] Loading trace points... [0.055s] Sorting trace points... [2.761s] Computing alignments... [97.367s] Deallocating buffers... [0.067s] Loading trace points... [0.075s] Sorting trace points... [2.669s] Computing alignments... [97.077s] Deallocating buffers... [0.055s] Loading trace points... [0.055s] Sorting trace points... [2.487s] Computing alignments... [96.735s] Deallocating buffers... [0.058s] Loading trace points... [0.074s] Sorting trace points... [2.606s] Computing alignments... [98.553s] Deallocating buffers... [0.066s] Loading trace points... [0.07s] Sorting trace points... [2.478s] Computing alignments... [94.347s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [2.639s] Computing alignments... [96.189s] Deallocating buffers... [0.067s] Loading trace points... [0s] [1603.33s] Deallocating reference... [0.076s] Loading reference sequences... [240.046s] Masking reference... [30.848s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.253s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.735s] Building query seed array... [2.114s] Computing hash join... [4.924s] Masking low complexity seeds... [0.186s] Searching alignments... [742.677s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.201s] Building query seed array... [2.487s] Computing hash join... [4.857s] Masking low complexity seeds... [0.178s] Searching alignments... [312.703s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.471s] Building query seed array... [2.486s] Computing hash join... [4.857s] Masking low complexity seeds... [0.186s] Searching alignments... [230.14s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.961s] Building query seed array... [2.043s] Computing hash join... [4.824s] Masking low complexity seeds... [0.18s] Searching alignments... [232.572s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.463s] Building query seed array... [1.916s] Computing hash join... [4.772s] Masking low complexity seeds... [0.183s] Searching alignments... [349.479s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.048s] Building query seed array... [2.164s] Computing hash join... [4.633s] Masking low complexity seeds... [0.17s] Searching alignments... [269.406s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.304s] Building query seed array... [2.325s] Computing hash join... [4.751s] Masking low complexity seeds... [0.169s] Searching alignments... [197.413s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.913s] Building query seed array... [1.92s] Computing hash join... [4.713s] Masking low complexity seeds... [0.171s] Searching alignments... [206.065s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.481s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.53s] Sorting trace points... [2.936s] Computing alignments... [94.48s] Deallocating buffers... [0.054s] Loading trace points... [0.091s] Sorting trace points... [2.7s] Computing alignments... [96.51s] Deallocating buffers... [0.053s] Loading trace points... [0.002s] Sorting trace points... [2.722s] Computing alignments... [92.21s] Deallocating buffers... [0.063s] Loading trace points... [0.093s] Sorting trace points... [2.384s] Computing alignments... [95.109s] Deallocating buffers... [0.052s] Loading trace points... [0.06s] Sorting trace points... [2.315s] Computing alignments... [94.863s] Deallocating buffers... [0.061s] Loading trace points... [0.08s] Sorting trace points... [2.378s] Computing alignments... [90.586s] Deallocating buffers... [0.061s] Loading trace points... [0.079s] Sorting trace points... [2.402s] Computing alignments... [91.875s] Deallocating buffers... [0.048s] Loading trace points... [0.079s] Sorting trace points... [2.19s] Computing alignments... [95.688s] Deallocating buffers... [0.061s] Loading trace points... [0.145s] Sorting trace points... [2.298s] Computing alignments... [93.466s] Deallocating buffers... [0.054s] Loading trace points... [0.069s] Sorting trace points... [2.048s] Computing alignments... [94.346s] Deallocating buffers... [0.063s] Loading trace points... [0.123s] Sorting trace points... [2.093s] Computing alignments... [94.685s] Deallocating buffers... [0.064s] Loading trace points... [0.08s] Sorting trace points... [2.732s] Computing alignments... [94.504s] Deallocating buffers... [0.058s] Loading trace points... [0.002s] Sorting trace points... [2.726s] Computing alignments... [93.99s] Deallocating buffers... [0.055s] Loading trace points... [0.079s] Sorting trace points... [2.138s] Computing alignments... [95.319s] Deallocating buffers... [0.058s] Loading trace points... [0.076s] Sorting trace points... [2.764s] Computing alignments... [90.683s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [2.646s] Computing alignments... [92.601s] Deallocating buffers... [0.056s] Loading trace points... [0s] [1557s] Deallocating reference... [0.076s] Loading reference sequences... [29.611s] Masking reference... [30.847s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.853s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.587s] Building query seed array... [2.167s] Computing hash join... [4.92s] Masking low complexity seeds... [0.179s] Searching alignments... [743.9s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12s] Building query seed array... [2.476s] Computing hash join... [4.833s] Masking low complexity seeds... [0.19s] Searching alignments... [311.106s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.299s] Building query seed array... [2.562s] Computing hash join... [4.966s] Masking low complexity seeds... [0.182s] Searching alignments... [235.716s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.005s] Building query seed array... [2.1s] Computing hash join... [4.862s] Masking low complexity seeds... [0.184s] Searching alignments... [231.32s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.798s] Building query seed array... [1.955s] Computing hash join... [4.698s] Masking low complexity seeds... [0.18s] Searching alignments... [359.259s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.365s] Building query seed array... [2.172s] Computing hash join... [4.71s] Masking low complexity seeds... [0.18s] Searching alignments... [270.589s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.812s] Building query seed array... [2.286s] Computing hash join... [4.672s] Masking low complexity seeds... [0.171s] Searching alignments... [193.31s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.824s] Building query seed array... [1.941s] Computing hash join... [4.71s] Masking low complexity seeds... [0.166s] Searching alignments... [204.655s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.515s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.701s] Sorting trace points... [2.754s] Computing alignments... [88.661s] Deallocating buffers... [0.05s] Loading trace points... [0.052s] Sorting trace points... [2.723s] Computing alignments... [89.31s] Deallocating buffers... [0.05s] Loading trace points... [0.04s] Sorting trace points... [2.802s] Computing alignments... [86.81s] Deallocating buffers... [0.05s] Loading trace points... [0.047s] Sorting trace points... [2.439s] Computing alignments... [89.42s] Deallocating buffers... [0.053s] Loading trace points... [0.002s] Sorting trace points... [2.744s] Computing alignments... [88.569s] Deallocating buffers... [0.044s] Loading trace points... [0.082s] Sorting trace points... [2.198s] Computing alignments... [84.95s] Deallocating buffers... [0.057s] Loading trace points... [0.087s] Sorting trace points... [2.745s] Computing alignments... [86.6s] Deallocating buffers... [0.048s] Loading trace points... [0.07s] Sorting trace points... [2.15s] Computing alignments... [89.215s] Deallocating buffers... [0.054s] Loading trace points... [0.083s] Sorting trace points... [2.746s] Computing alignments... [87.595s] Deallocating buffers... [0.05s] Loading trace points... [0.045s] Sorting trace points... [2.216s] Computing alignments... [88.472s] Deallocating buffers... [0.055s] Loading trace points... [0.085s] Sorting trace points... [2.208s] Computing alignments... [88.432s] Deallocating buffers... [0.055s] Loading trace points... [0.045s] Sorting trace points... [2.508s] Computing alignments... [88.579s] Deallocating buffers... [0.053s] Loading trace points... [0.054s] Sorting trace points... [2.174s] Computing alignments... [88.142s] Deallocating buffers... [0.06s] Loading trace points... [0.082s] Sorting trace points... [2.786s] Computing alignments... [89.498s] Deallocating buffers... [0.048s] Loading trace points... [0.288s] Sorting trace points... [2.804s] Computing alignments... [86.036s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [2.786s] Computing alignments... [86.726s] Deallocating buffers... [0.049s] Loading trace points... [0s] [1464.52s] Deallocating reference... [0.071s] Loading reference sequences... [23.829s] Masking reference... [25.043s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [27.217s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.63s] Building query seed array... [2.136s] Computing hash join... [4.119s] Masking low complexity seeds... [0.171s] Searching alignments... [595.769s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.759s] Building query seed array... [2.412s] Computing hash join... [4.009s] Masking low complexity seeds... [0.178s] Searching alignments... [250.124s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.715s] Building query seed array... [2.591s] Computing hash join... [4.038s] Masking low complexity seeds... [0.172s] Searching alignments... [186.803s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.427s] Building query seed array... [2.081s] Computing hash join... [4.048s] Masking low complexity seeds... [0.176s] Searching alignments... [188.109s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.442s] Building query seed array... [1.967s] Computing hash join... [3.955s] Masking low complexity seeds... [0.163s] Searching alignments... [289.198s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.708s] Building query seed array... [2.212s] Computing hash join... [3.888s] Masking low complexity seeds... [0.156s] Searching alignments... [213.041s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.213s] Building query seed array... [2.301s] Computing hash join... [3.965s] Masking low complexity seeds... [0.161s] Searching alignments... [155.266s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.921s] Building query seed array... [1.909s] Computing hash join... [3.924s] Masking low complexity seeds... [0.17s] Searching alignments... [161.054s] Deallocating memory... [0s] Deallocating buffers... [0.121s] Clearing query masking... [1.506s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.995s] Sorting trace points... [2.307s] Computing alignments... [68.96s] Deallocating buffers... [0.041s] Loading trace points... [0.072s] Sorting trace points... [1.72s] Computing alignments... [69.951s] Deallocating buffers... [0.043s] Loading trace points... [0.105s] Sorting trace points... [2.326s] Computing alignments... [68.094s] Deallocating buffers... [0.046s] Loading trace points... [0.053s] Sorting trace points... [1.903s] Computing alignments... [69.597s] Deallocating buffers... [0.047s] Loading trace points... [0.047s] Sorting trace points... [1.817s] Computing alignments... [68.961s] Deallocating buffers... [0.04s] Loading trace points... [0.065s] Sorting trace points... [2.246s] Computing alignments... [65.906s] Deallocating buffers... [0.039s] Loading trace points... [0.077s] Sorting trace points... [1.725s] Computing alignments... [66.898s] Deallocating buffers... [0.04s] Loading trace points... [0.003s] Sorting trace points... [2.313s] Computing alignments... [69.36s] Deallocating buffers... [0.04s] Loading trace points... [0.001s] Sorting trace points... [2.278s] Computing alignments... [68.036s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.992s] Computing alignments... [68.596s] Deallocating buffers... [0.046s] Loading trace points... [0.067s] Sorting trace points... [1.827s] Computing alignments... [69.084s] Deallocating buffers... [0.046s] Loading trace points... [0.055s] Sorting trace points... [2.42s] Computing alignments... [69.569s] Deallocating buffers... [0.048s] Loading trace points... [0.067s] Sorting trace points... [1.845s] Computing alignments... [68.293s] Deallocating buffers... [0.041s] Loading trace points... [0.085s] Sorting trace points... [1.637s] Computing alignments... [70.112s] Deallocating buffers... [0.043s] Loading trace points... [0.002s] Sorting trace points... [2.247s] Computing alignments... [66.014s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [2.073s] Computing alignments... [67.495s] Deallocating buffers... [0.04s] Loading trace points... [0s] [1141.07s] Deallocating reference... [0.058s] Loading reference sequences... [0.094s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [4904.31s] [4904.31s] Deallocating queries... [0.058s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.041s] [3.853s] Closing the database... [0s] Cleaning up... [0s] Total time = 64706.1s Reported 5902561781 pairwise alignments, 5902561781 HSPs. 5326628 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R2.fastq.gz complete: CH07-06.trimmed.R2.blastx.meganized.daa Now MEGANizing CH07-06.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-06.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (167.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9,206.5s) Total reads: 5,326,628 With hits: 5,326,628 Alignments: 4,014,647,182 Assig. Taxonomy: 3,079,815 Assig. SEED: 137,352 Assig. EGGNOG: 66,078 Assig. GTDB: 350,814 Assig. EC: 506,967 Assig. INTERPRO2GO: 1,399,459 MinSupport set to: 2663 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,755 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (21.5s) Min-supp. changes: 3,934 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.0s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 166 Class. SEED: 499 Class. EGGNOG: 1,723 Class. GTDB: 61 Class. EC: 2,360 Class. INTERPRO2GO: 8,760 Total time: 9,415s Peak memory: 37 of 195.3G MEGANization of CH07-06.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R1.fastq.gz... ef6519d7c6bf53d00b29f724b2dc8cf7 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.344s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.747s] Opening the output file... [0.034s] Loading query sequences... [131.479s] Masking queries... [33.536s] Algorithm: Double-indexed Building query histograms... [26.889s] Loading reference sequences... [31.596s] Masking reference... [31.973s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.72s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.308s] Building query seed array... [3.031s] Computing hash join... [5.456s] Masking low complexity seeds... [0.214s] Searching alignments... [1872.65s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.385s] Building query seed array... [3.535s] Computing hash join... [5.05s] Masking low complexity seeds... [0.208s] Searching alignments... [838.065s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.285s] Building query seed array... [3.719s] Computing hash join... [5.105s] Masking low complexity seeds... [0.205s] Searching alignments... [607.677s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.141s] Building query seed array... [3.002s] Computing hash join... [5.165s] Masking low complexity seeds... [0.205s] Searching alignments... [621.61s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.351s] Building query seed array... [2.766s] Computing hash join... [4.973s] Masking low complexity seeds... [0.191s] Searching alignments... [871.578s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.573s] Building query seed array... [3.125s] Computing hash join... [4.841s] Masking low complexity seeds... [0.193s] Searching alignments... [691.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.374s] Building query seed array... [3.303s] Computing hash join... [4.884s] Masking low complexity seeds... [0.196s] Searching alignments... [490.878s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.854s] Building query seed array... [2.767s] Computing hash join... [4.914s] Masking low complexity seeds... [0.201s] Searching alignments... [496.354s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.924s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [35.696s] Sorting trace points... [7.686s] Computing alignments... [214.857s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (113341556437) exceeds memory limit. [0.087s] Sorting trace points... [7.499s] Computing alignments... [221.399s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114489268372) exceeds memory limit. [0.059s] Sorting trace points... [7.477s] Computing alignments... [221.77s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (116640882217) exceeds memory limit. [0.063s] Sorting trace points... [6.344s] Computing alignments... [228.269s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (116301625702) exceeds memory limit. [0.081s] Sorting trace points... [6.177s] Computing alignments... [219.157s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (113931268342) exceeds memory limit. [0.057s] Sorting trace points... [7.039s] Computing alignments... [218.368s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114173596447) exceeds memory limit. [0.05s] Sorting trace points... [7.616s] Computing alignments... [219.475s] Deallocating buffers... [0.091s] Loading trace points... Warning: resident size (115941769942) exceeds memory limit. [0.07s] Sorting trace points... [6.859s] Computing alignments... [228.299s] Deallocating buffers... [0.098s] Loading trace points... Warning: resident size (115788171247) exceeds memory limit. [0.963s] Sorting trace points... [5.642s] Computing alignments... [220.364s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (114793351762) exceeds memory limit. [0.067s] Sorting trace points... [5.947s] Computing alignments... [221.478s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (115694488132) exceeds memory limit. [0.06s] Sorting trace points... [5.983s] Computing alignments... [225.039s] Deallocating buffers... [0.116s] Loading trace points... Warning: resident size (117605975167) exceeds memory limit. [0.055s] Sorting trace points... [6.261s] Computing alignments... [233.248s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (117047599822) exceeds memory limit. [0.061s] Sorting trace points... [7.398s] Computing alignments... [221.774s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (115287502537) exceeds memory limit. [0.064s] Sorting trace points... [6.12s] Computing alignments... [222.824s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (115567154362) exceeds memory limit. [0.055s] Sorting trace points... [6.19s] Computing alignments... [223.859s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (116843837542) exceeds memory limit. [0s] Sorting trace points... [7.643s] Computing alignments... [225.243s] Deallocating buffers... [0.145s] Loading trace points... [0s] [3712.96s] Deallocating reference... [0.067s] Loading reference sequences... [35.745s] Masking reference... [31.063s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [33.41s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.285s] Building query seed array... [3.173s] Computing hash join... [5.123s] Masking low complexity seeds... [0.201s] Searching alignments... [1835.44s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.008s] Building query seed array... [3.497s] Computing hash join... [5.145s] Masking low complexity seeds... [0.216s] Searching alignments... [809.962s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.59s] Building query seed array... [3.619s] Computing hash join... [5.075s] Masking low complexity seeds... [0.204s] Searching alignments... [604.41s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.103s] Building query seed array... [3.018s] Computing hash join... [5.015s] Masking low complexity seeds... [0.209s] Searching alignments... [616.335s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.13s] Building query seed array... [2.68s] Computing hash join... [4.861s] Masking low complexity seeds... [0.198s] Searching alignments... [867.609s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.031s] Building query seed array... [3.046s] Computing hash join... [4.945s] Masking low complexity seeds... [0.189s] Searching alignments... [660.352s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.103s] Building query seed array... [3.293s] Computing hash join... [4.932s] Masking low complexity seeds... [0.191s] Searching alignments... [484.049s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.242s] Building query seed array... [2.755s] Computing hash join... [5.004s] Masking low complexity seeds... [0.192s] Searching alignments... [492.537s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [1.959s] Opening temporary output file... [0.022s] Computing alignments... Loading trace points... [35.433s] Sorting trace points... [7.22s] Computing alignments... [226.839s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (112845305257) exceeds memory limit. [0.086s] Sorting trace points... [5.931s] Computing alignments... [231.547s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (113991018532) exceeds memory limit. [0.102s] Sorting trace points... [6.226s] Computing alignments... [231.877s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (116134574452) exceeds memory limit. [0.067s] Sorting trace points... [5.54s] Computing alignments... [239.541s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (115793869282) exceeds memory limit. [0.072s] Sorting trace points... [5.395s] Computing alignments... [228.976s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (113434146667) exceeds memory limit. [0.078s] Sorting trace points... [5.983s] Computing alignments... [228.838s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (113679950977) exceeds memory limit. [0.057s] Sorting trace points... [5.949s] Computing alignments... [230.438s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (115438713232) exceeds memory limit. [0.109s] Sorting trace points... [6.194s] Computing alignments... [241.858s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (115283317582) exceeds memory limit. [0.069s] Sorting trace points... [5.838s] Computing alignments... [231.446s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (114292573822) exceeds memory limit. [0.107s] Sorting trace points... [5.24s] Computing alignments... [230.507s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115186996207) exceeds memory limit. [0.086s] Sorting trace points... [6.205s] Computing alignments... [235.266s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (117087930742) exceeds memory limit. [0.072s] Sorting trace points... [5.566s] Computing alignments... [246.742s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (116531803282) exceeds memory limit. [0.055s] Sorting trace points... [7.328s] Computing alignments... [232.92s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (114782090122) exceeds memory limit. [0.075s] Sorting trace points... [5.774s] Computing alignments... [234.807s] Deallocating buffers... [0.157s] Loading trace points... Warning: resident size (115062106657) exceeds memory limit. [0.057s] Sorting trace points... [7.286s] Computing alignments... [234.064s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (116334287482) exceeds memory limit. [0s] Sorting trace points... [6.242s] Computing alignments... [235.593s] Deallocating buffers... [0.133s] Loading trace points... [0s] [3878.11s] Deallocating reference... [0.069s] Loading reference sequences... [29.974s] Masking reference... [31.015s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.878s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.351s] Building query seed array... [3.112s] Computing hash join... [5.148s] Masking low complexity seeds... [0.205s] Searching alignments... [1867.42s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.317s] Building query seed array... [3.527s] Computing hash join... [5.102s] Masking low complexity seeds... [0.215s] Searching alignments... [826.045s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.179s] Building query seed array... [3.57s] Computing hash join... [5.128s] Masking low complexity seeds... [0.204s] Searching alignments... [601.055s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.147s] Building query seed array... [2.994s] Computing hash join... [5.014s] Masking low complexity seeds... [0.198s] Searching alignments... [612.543s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.811s] Building query seed array... [2.696s] Computing hash join... [4.954s] Masking low complexity seeds... [0.194s] Searching alignments... [864.097s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.451s] Building query seed array... [3.148s] Computing hash join... [4.885s] Masking low complexity seeds... [0.198s] Searching alignments... [666.899s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.527s] Building query seed array... [3.302s] Computing hash join... [4.997s] Masking low complexity seeds... [0.194s] Searching alignments... [486.466s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.838s] Building query seed array... [2.82s] Computing hash join... [4.94s] Masking low complexity seeds... [0.194s] Searching alignments... [497.46s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.088s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [35.508s] Sorting trace points... [7.241s] Computing alignments... [227.035s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (112602433155) exceeds memory limit. [0.079s] Sorting trace points... [6.309s] Computing alignments... [231.097s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (113736449715) exceeds memory limit. [0.066s] Sorting trace points... [5.302s] Computing alignments... [231.275s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (115867864665) exceeds memory limit. [0.067s] Sorting trace points... [6.672s] Computing alignments... [237.877s] Deallocating buffers... [0.161s] Loading trace points... Warning: resident size (115532246040) exceeds memory limit. [0.046s] Sorting trace points... [6.635s] Computing alignments... [229.927s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (113185318590) exceeds memory limit. [0.074s] Sorting trace points... [5.391s] Computing alignments... [227.515s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (113425427205) exceeds memory limit. [0.053s] Sorting trace points... [7.374s] Computing alignments... [227.621s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (115175400555) exceeds memory limit. [0.075s] Sorting trace points... [5.385s] Computing alignments... [240.918s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (115022404905) exceeds memory limit. [0.06s] Sorting trace points... [5.308s] Computing alignments... [229.982s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114038887710) exceeds memory limit. [0.076s] Sorting trace points... [6.988s] Computing alignments... [230.094s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (114928917630) exceeds memory limit. [0.063s] Sorting trace points... [7.53s] Computing alignments... [233.116s] Deallocating buffers... [0.156s] Loading trace points... Warning: resident size (116820758985) exceeds memory limit. [0.066s] Sorting trace points... [7.123s] Computing alignments... [243.961s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (116271009060) exceeds memory limit. [0.076s] Sorting trace points... [5.926s] Computing alignments... [232.319s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (114527547315) exceeds memory limit. [0.075s] Sorting trace points... [5.307s] Computing alignments... [232.524s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (114805193220) exceeds memory limit. [0.048s] Sorting trace points... [6.878s] Computing alignments... [232.853s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (116068524570) exceeds memory limit. [0s] Sorting trace points... [6.447s] Computing alignments... [232.998s] Deallocating buffers... [0.144s] Loading trace points... [0s] [3861.78s] Deallocating reference... [0.07s] Loading reference sequences... [29.47s] Masking reference... [30.99s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.48s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.519s] Building query seed array... [3.064s] Computing hash join... [5.266s] Masking low complexity seeds... [0.202s] Searching alignments... [1881.55s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.281s] Building query seed array... [3.433s] Computing hash join... [4.995s] Masking low complexity seeds... [0.207s] Searching alignments... [820.862s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.288s] Building query seed array... [3.7s] Computing hash join... [5.219s] Masking low complexity seeds... [0.205s] Searching alignments... [605.72s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.993s] Building query seed array... [3.001s] Computing hash join... [5.106s] Masking low complexity seeds... [0.21s] Searching alignments... [624.599s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.927s] Building query seed array... [2.793s] Computing hash join... [4.887s] Masking low complexity seeds... [0.187s] Searching alignments... [879.29s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.129s] Building query seed array... [3.145s] Computing hash join... [4.953s] Masking low complexity seeds... [0.191s] Searching alignments... [669.888s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.373s] Building query seed array... [3.255s] Computing hash join... [4.925s] Masking low complexity seeds... [0.205s] Searching alignments... [491.279s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.097s] Building query seed array... [2.791s] Computing hash join... [4.982s] Masking low complexity seeds... [0.192s] Searching alignments... [500.541s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [2.078s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [35.904s] Sorting trace points... [7.007s] Computing alignments... [220.497s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (113200327954) exceeds memory limit. [0.078s] Sorting trace points... [7.498s] Computing alignments... [226.076s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114341977669) exceeds memory limit. [0.001s] Sorting trace points... [7.439s] Computing alignments... [226.137s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (116489439214) exceeds memory limit. [0.05s] Sorting trace points... [7.739s] Computing alignments... [233.786s] Deallocating buffers... [0.156s] Loading trace points... Warning: resident size (116151578614) exceeds memory limit. [0.057s] Sorting trace points... [6.031s] Computing alignments... [224.598s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (113786487724) exceeds memory limit. [0.076s] Sorting trace points... [7.456s] Computing alignments... [223.007s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (114027298954) exceeds memory limit. [0.072s] Sorting trace points... [7.537s] Computing alignments... [223.956s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (115792930354) exceeds memory limit. [0.065s] Sorting trace points... [7.252s] Computing alignments... [235.304s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (115639515649) exceeds memory limit. [0.063s] Sorting trace points... [6.081s] Computing alignments... [226.906s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (114647254654) exceeds memory limit. [0.001s] Sorting trace points... [7.512s] Computing alignments... [225.428s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (115543528219) exceeds memory limit. [0.038s] Sorting trace points... [7.451s] Computing alignments... [229.981s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (117448556944) exceeds memory limit. [0.048s] Sorting trace points... [6.943s] Computing alignments... [238.431s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (116894972164) exceeds memory limit. [0.087s] Sorting trace points... [5.554s] Computing alignments... [226.598s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115138604134) exceeds memory limit. [0.048s] Sorting trace points... [5.328s] Computing alignments... [228.204s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (115417236919) exceeds memory limit. [0.063s] Sorting trace points... [5.326s] Computing alignments... [228.662s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (116690249914) exceeds memory limit. [0s] Sorting trace points... [5.381s] Computing alignments... [229.165s] Deallocating buffers... [0.145s] Loading trace points... [0s] [3793.2s] Deallocating reference... [0.07s] Loading reference sequences... [241.782s] Masking reference... [31.031s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.395s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.249s] Building query seed array... [3.033s] Computing hash join... [5.239s] Masking low complexity seeds... [0.207s] Searching alignments... [1862.99s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.34s] Building query seed array... [3.434s] Computing hash join... [5s] Masking low complexity seeds... [0.206s] Searching alignments... [822.409s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.146s] Building query seed array... [3.608s] Computing hash join... [5.142s] Masking low complexity seeds... [0.21s] Searching alignments... [600.77s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.003s] Building query seed array... [3.1s] Computing hash join... [5.071s] Masking low complexity seeds... [0.205s] Searching alignments... [611.871s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.399s] Building query seed array... [2.795s] Computing hash join... [5.09s] Masking low complexity seeds... [0.2s] Searching alignments... [870.783s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.278s] Building query seed array... [3.085s] Computing hash join... [4.917s] Masking low complexity seeds... [0.188s] Searching alignments... [671.192s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.319s] Building query seed array... [3.371s] Computing hash join... [4.976s] Masking low complexity seeds... [0.199s] Searching alignments... [488.055s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.295s] Building query seed array... [2.734s] Computing hash join... [4.875s] Masking low complexity seeds... [0.191s] Searching alignments... [499.864s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [2.026s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [35.522s] Sorting trace points... [7.096s] Computing alignments... [236.328s] Deallocating buffers... [0.119s] Loading trace points... Warning: resident size (113085970010) exceeds memory limit. [0.001s] Sorting trace points... [6.95s] Computing alignments... [241.052s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (114232012745) exceeds memory limit. [0.061s] Sorting trace points... [5.257s] Computing alignments... [240.083s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (116381092730) exceeds memory limit. [0.054s] Sorting trace points... [5.995s] Computing alignments... [246.291s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (116041559150) exceeds memory limit. [0.093s] Sorting trace points... [5.445s] Computing alignments... [239.143s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (113675050235) exceeds memory limit. [0.059s] Sorting trace points... [5.619s] Computing alignments... [237.302s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (113918913785) exceeds memory limit. [0.054s] Sorting trace points... [7.127s] Computing alignments... [237.121s] Deallocating buffers... [0.158s] Loading trace points... Warning: resident size (115684720820) exceeds memory limit. [0.039s] Sorting trace points... [5.783s] Computing alignments... [251.643s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (115529992445) exceeds memory limit. [0.049s] Sorting trace points... [5.203s] Computing alignments... [240.552s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (114536872805) exceeds memory limit. [0.068s] Sorting trace points... [5.451s] Computing alignments... [238.336s] Deallocating buffers... [0.111s] Loading trace points... Warning: resident size (115436898920) exceeds memory limit. [0.057s] Sorting trace points... [6.369s] Computing alignments... [243.784s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (117342859430) exceeds memory limit. [0.078s] Sorting trace points... [5.871s] Computing alignments... [255.341s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (116785059980) exceeds memory limit. [0.061s] Sorting trace points... [7.361s] Computing alignments... [242.437s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (115029937160) exceeds memory limit. [0.069s] Sorting trace points... [6.182s] Computing alignments... [242.164s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (115308547340) exceeds memory limit. [0.055s] Sorting trace points... [5.43s] Computing alignments... [242.034s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (116583851750) exceeds memory limit. [0s] Sorting trace points... [5.508s] Computing alignments... [243.117s] Deallocating buffers... [0.15s] Loading trace points... [0s] [4012.03s] Deallocating reference... [0.069s] Loading reference sequences... [247.037s] Masking reference... [30.941s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [31.968s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.475s] Building query seed array... [3.127s] Computing hash join... [5.167s] Masking low complexity seeds... [0.208s] Searching alignments... [1852.37s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.159s] Building query seed array... [3.481s] Computing hash join... [5.106s] Masking low complexity seeds... [0.207s] Searching alignments... [817.358s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.517s] Building query seed array... [3.586s] Computing hash join... [5.063s] Masking low complexity seeds... [0.202s] Searching alignments... [589.977s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.346s] Building query seed array... [3.006s] Computing hash join... [5.165s] Masking low complexity seeds... [0.204s] Searching alignments... [614.674s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.078s] Building query seed array... [2.774s] Computing hash join... [4.85s] Masking low complexity seeds... [0.187s] Searching alignments... [859.927s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.865s] Building query seed array... [3.202s] Computing hash join... [4.914s] Masking low complexity seeds... [0.192s] Searching alignments... [662.031s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.297s] Building query seed array... [3.292s] Computing hash join... [4.925s] Masking low complexity seeds... [0.189s] Searching alignments... [479.646s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.082s] Building query seed array... [2.808s] Computing hash join... [5.07s] Masking low complexity seeds... [0.195s] Searching alignments... [494.516s] Deallocating memory... [0s] Deallocating buffers... [0.151s] Clearing query masking... [2.032s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [35.358s] Sorting trace points... [7.325s] Computing alignments... [226.522s] Deallocating buffers... [0.116s] Loading trace points... Warning: resident size (112692500424) exceeds memory limit. [0.093s] Sorting trace points... [7.285s] Computing alignments... [230.398s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (113831743869) exceeds memory limit. [0.064s] Sorting trace points... [6.215s] Computing alignments... [231.2s] Deallocating buffers... [0.116s] Loading trace points... Warning: resident size (115966663584) exceeds memory limit. [0.049s] Sorting trace points... [5.496s] Computing alignments... [237.819s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (115630248144) exceeds memory limit. [0.058s] Sorting trace points... [5.756s] Computing alignments... [230.858s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (113278510644) exceeds memory limit. [0.126s] Sorting trace points... [6.374s] Computing alignments... [227.142s] Deallocating buffers... [0.119s] Loading trace points... Warning: resident size (113519420934) exceeds memory limit. [0.075s] Sorting trace points... [7.582s] Computing alignments... [226.706s] Deallocating buffers... [0.157s] Loading trace points... Warning: resident size (115273091739) exceeds memory limit. [0.427s] Sorting trace points... [5.736s] Computing alignments... [240.733s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115119251889) exceeds memory limit. [0.083s] Sorting trace points... [7.019s] Computing alignments... [231.294s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (114132661119) exceeds memory limit. [0.043s] Sorting trace points... [6.364s] Computing alignments... [229.777s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (115025380089) exceeds memory limit. [0.125s] Sorting trace points... [6.205s] Computing alignments... [232.882s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (116920954074) exceeds memory limit. [0.443s] Sorting trace points... [5.522s] Computing alignments... [243.313s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (116367213804) exceeds memory limit. [0s] Sorting trace points... [6.222s] Computing alignments... [231.761s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114621938649) exceeds memory limit. [0.055s] Sorting trace points... [6.689s] Computing alignments... [233.29s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114901322289) exceeds memory limit. [0.092s] Sorting trace points... [6.743s] Computing alignments... [233.506s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (116167143114) exceeds memory limit. [0s] Sorting trace points... [6.314s] Computing alignments... [234.157s] Deallocating buffers... [0.14s] Loading trace points... [0s] [3863.49s] Deallocating reference... [0.068s] Loading reference sequences... [29.765s] Masking reference... [30.885s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.757s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.767s] Building query seed array... [3.093s] Computing hash join... [5.146s] Masking low complexity seeds... [0.207s] Searching alignments... [1860.15s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.211s] Building query seed array... [3.503s] Computing hash join... [5.121s] Masking low complexity seeds... [0.209s] Searching alignments... [813.511s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.9s] Building query seed array... [3.769s] Computing hash join... [5.077s] Masking low complexity seeds... [0.205s] Searching alignments... [598.719s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.852s] Building query seed array... [2.904s] Computing hash join... [5.119s] Masking low complexity seeds... [0.209s] Searching alignments... [610.231s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.023s] Building query seed array... [2.775s] Computing hash join... [4.835s] Masking low complexity seeds... [0.195s] Searching alignments... [868.738s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.418s] Building query seed array... [3.098s] Computing hash join... [4.862s] Masking low complexity seeds... [0.189s] Searching alignments... [663.101s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.997s] Building query seed array... [3.179s] Computing hash join... [4.959s] Masking low complexity seeds... [0.191s] Searching alignments... [484.051s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.053s] Building query seed array... [2.755s] Computing hash join... [4.895s] Masking low complexity seeds... [0.195s] Searching alignments... [496.734s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.995s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [35.726s] Sorting trace points... [5.256s] Computing alignments... [227.504s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (112748244050) exceeds memory limit. [0.062s] Sorting trace points... [6.402s] Computing alignments... [232.198s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (113888545445) exceeds memory limit. [0.07s] Sorting trace points... [6.404s] Computing alignments... [232.716s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (116025165695) exceeds memory limit. [0.109s] Sorting trace points... [6.836s] Computing alignments... [241.1s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (115687627550) exceeds memory limit. [0.068s] Sorting trace points... [5.691s] Computing alignments... [233.441s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (113334682220) exceeds memory limit. [0.044s] Sorting trace points... [6.347s] Computing alignments... [229.015s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (113577513500) exceeds memory limit. [0.064s] Sorting trace points... [7.583s] Computing alignments... [229.13s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (115332047840) exceeds memory limit. [0.036s] Sorting trace points... [7.807s] Computing alignments... [244.198s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (115178175980) exceeds memory limit. [0.075s] Sorting trace points... [5.596s] Computing alignments... [232.977s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (114191623385) exceeds memory limit. [0.054s] Sorting trace points... [6.241s] Computing alignments... [232.435s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (115084191740) exceeds memory limit. [0.052s] Sorting trace points... [6.554s] Computing alignments... [235.572s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (116980544360) exceeds memory limit. [0.061s] Sorting trace points... [5.579s] Computing alignments... [247.282s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (116428503890) exceeds memory limit. [0.06s] Sorting trace points... [5.201s] Computing alignments... [233.839s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (114682086365) exceeds memory limit. [0.046s] Sorting trace points... [5.428s] Computing alignments... [235.486s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (114959243255) exceeds memory limit. [0.07s] Sorting trace points... [5.401s] Computing alignments... [236.912s] Deallocating buffers... [0.123s] Loading trace points... Warning: resident size (116226523535) exceeds memory limit. [0s] Sorting trace points... [6.004s] Computing alignments... [236.188s] Deallocating buffers... [0.138s] Loading trace points... [0s] [3897.69s] Deallocating reference... [0.067s] Loading reference sequences... [29.607s] Masking reference... [30.87s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.011s] Building reference histograms... [32.81s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.318s] Building query seed array... [3.167s] Computing hash join... [5.189s] Masking low complexity seeds... [0.21s] Searching alignments... [1850.84s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.594s] Building query seed array... [3.401s] Computing hash join... [5.053s] Masking low complexity seeds... [0.203s] Searching alignments... [816.39s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.194s] Building query seed array... [3.554s] Computing hash join... [5.059s] Masking low complexity seeds... [0.21s] Searching alignments... [597.078s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.157s] Building query seed array... [2.981s] Computing hash join... [5.169s] Masking low complexity seeds... [0.205s] Searching alignments... [619.133s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.217s] Building query seed array... [2.707s] Computing hash join... [4.941s] Masking low complexity seeds... [0.199s] Searching alignments... [864.222s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.609s] Building query seed array... [3.157s] Computing hash join... [4.975s] Masking low complexity seeds... [0.201s] Searching alignments... [655.632s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.168s] Building query seed array... [3.294s] Computing hash join... [5.012s] Masking low complexity seeds... [0.183s] Searching alignments... [479.944s] Deallocating memory... [0.004s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.136s] Building query seed array... [2.864s] Computing hash join... [4.984s] Masking low complexity seeds... [0.207s] Searching alignments... [497.707s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.09s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [35.277s] Sorting trace points... [7.471s] Computing alignments... [218.365s] Deallocating buffers... [0.115s] Loading trace points... Warning: resident size (112456846016) exceeds memory limit. [0.076s] Sorting trace points... [6.507s] Computing alignments... [223.19s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (113585667041) exceeds memory limit. [0.05s] Sorting trace points... [7.218s] Computing alignments... [223.404s] Deallocating buffers... [0.116s] Loading trace points... Warning: resident size (115711396946) exceeds memory limit. [0.062s] Sorting trace points... [5.419s] Computing alignments... [230.407s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (115378918691) exceeds memory limit. [0.082s] Sorting trace points... [5.149s] Computing alignments... [221.393s] Deallocating buffers... [0.123s] Loading trace points... Warning: resident size (113038550936) exceeds memory limit. [0.056s] Sorting trace points... [7.26s] Computing alignments... [220.572s] Deallocating buffers... [0.097s] Loading trace points... Warning: resident size (113278019801) exceeds memory limit. [0.001s] Sorting trace points... [6.058s] Computing alignments... [220.819s] Deallocating buffers... [0.098s] Loading trace points... Warning: resident size (115023836006) exceeds memory limit. [0.041s] Sorting trace points... [7.493s] Computing alignments... [231.088s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (114873285431) exceeds memory limit. [0.041s] Sorting trace points... [5.36s] Computing alignments... [223.373s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (113891173256) exceeds memory limit. [0.056s] Sorting trace points... [6.317s] Computing alignments... [222.117s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (114776762591) exceeds memory limit. [0.055s] Sorting trace points... [5.683s] Computing alignments... [226.37s] Deallocating buffers... [0.117s] Loading trace points... Warning: resident size (116664490901) exceeds memory limit. [0.068s] Sorting trace points... [6.378s] Computing alignments... [235.441s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (116116563671) exceeds memory limit. [0.042s] Sorting trace points... [6.064s] Computing alignments... [223.191s] Deallocating buffers... [0.109s] Loading trace points... Warning: resident size (114376722206) exceeds memory limit. [0.064s] Sorting trace points... [7.143s] Computing alignments... [225.487s] Deallocating buffers... [0.113s] Loading trace points... Warning: resident size (114651732701) exceeds memory limit. [0s] Sorting trace points... [6.785s] Computing alignments... [225.929s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (115911438986) exceeds memory limit. [0s] Sorting trace points... [5.394s] Computing alignments... [226.265s] Deallocating buffers... [0.127s] Loading trace points... [0s] [3737.12s] Deallocating reference... [0.064s] Loading reference sequences... [29.646s] Masking reference... [30.95s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.652s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.166s] Building query seed array... [3.157s] Computing hash join... [5.292s] Masking low complexity seeds... [0.216s] Searching alignments... [1875.95s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.212s] Building query seed array... [3.482s] Computing hash join... [5.054s] Masking low complexity seeds... [0.211s] Searching alignments... [832.229s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.371s] Building query seed array... [3.689s] Computing hash join... [5.086s] Masking low complexity seeds... [0.201s] Searching alignments... [615.419s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.278s] Building query seed array... [3.003s] Computing hash join... [4.997s] Masking low complexity seeds... [0.201s] Searching alignments... [627.838s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.258s] Building query seed array... [2.768s] Computing hash join... [5.006s] Masking low complexity seeds... [0.204s] Searching alignments... [877.108s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.06s] Building query seed array... [3.137s] Computing hash join... [4.981s] Masking low complexity seeds... [0.186s] Searching alignments... [666.818s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.04s] Building query seed array... [3.352s] Computing hash join... [4.963s] Masking low complexity seeds... [0.196s] Searching alignments... [490.851s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.844s] Building query seed array... [2.782s] Computing hash join... [4.968s] Masking low complexity seeds... [0.198s] Searching alignments... [506.116s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.042s] Opening temporary output file... [0.009s] Computing alignments... Loading trace points... [35.662s] Sorting trace points... [7.452s] Computing alignments... [221.443s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (112864695599) exceeds memory limit. [0.045s] Sorting trace points... [6.97s] Computing alignments... [226.179s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114001029059) exceeds memory limit. [0.072s] Sorting trace points... [6.009s] Computing alignments... [226.92s] Deallocating buffers... [0.112s] Loading trace points... Warning: resident size (116138047349) exceeds memory limit. [0.075s] Sorting trace points... [6.069s] Computing alignments... [233.268s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (115800554114) exceeds memory limit. [0.065s] Sorting trace points... [5.972s] Computing alignments... [225.561s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (113446301444) exceeds memory limit. [0.073s] Sorting trace points... [5.685s] Computing alignments... [224.567s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (113686024154) exceeds memory limit. [0.06s] Sorting trace points... [7.339s] Computing alignments... [224.163s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (115442323064) exceeds memory limit. [0.142s] Sorting trace points... [5.523s] Computing alignments... [236.187s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (115289848754) exceeds memory limit. [0.058s] Sorting trace points... [7.128s] Computing alignments... [227.118s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (114305867099) exceeds memory limit. [0.062s] Sorting trace points... [6.305s] Computing alignments... [226.437s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (115199087414) exceeds memory limit. [0.065s] Sorting trace points... [6.725s] Computing alignments... [230.284s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (117094392074) exceeds memory limit. [0.076s] Sorting trace points... [5.635s] Computing alignments... [239.762s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (116541972719) exceeds memory limit. [0.082s] Sorting trace points... [6.627s] Computing alignments... [227.895s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (114791551679) exceeds memory limit. [0.118s] Sorting trace points... [7.22s] Computing alignments... [229.577s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (115070092199) exceeds memory limit. [0.058s] Sorting trace points... [7.514s] Computing alignments... [229.131s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (116338403669) exceeds memory limit. [0s] Sorting trace points... [6.329s] Computing alignments... [229.345s] Deallocating buffers... [0.135s] Loading trace points... [0s] [3801.27s] Deallocating reference... [0.061s] Loading reference sequences... [32.578s] Masking reference... [31.833s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.102s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.545s] Building query seed array... [3.151s] Computing hash join... [5.224s] Masking low complexity seeds... [0.208s] Searching alignments... [1855.32s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.383s] Building query seed array... [3.495s] Computing hash join... [5.074s] Masking low complexity seeds... [0.207s] Searching alignments... [831.72s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.055s] Building query seed array... [3.692s] Computing hash join... [5.147s] Masking low complexity seeds... [0.202s] Searching alignments... [597.191s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.774s] Building query seed array... [3.011s] Computing hash join... [5.096s] Masking low complexity seeds... [0.197s] Searching alignments... [620.811s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.488s] Building query seed array... [2.778s] Computing hash join... [4.983s] Masking low complexity seeds... [0.197s] Searching alignments... [866.137s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.745s] Building query seed array... [3.067s] Computing hash join... [4.903s] Masking low complexity seeds... [0.19s] Searching alignments... [665.996s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.327s] Building query seed array... [3.305s] Computing hash join... [4.92s] Masking low complexity seeds... [0.192s] Searching alignments... [483.253s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.86s] Building query seed array... [2.733s] Computing hash join... [5.046s] Masking low complexity seeds... [0.19s] Searching alignments... [493.581s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [2.036s] Opening temporary output file... [0.028s] Computing alignments... Loading trace points... [35.698s] Sorting trace points... [6.717s] Computing alignments... [198.516s] Deallocating buffers... [0.117s] Loading trace points... Warning: resident size (112699653286) exceeds memory limit. [0.081s] Sorting trace points... [6.733s] Computing alignments... [203.423s] Deallocating buffers... [0.114s] Loading trace points... Warning: resident size (113837955961) exceeds memory limit. [0.056s] Sorting trace points... [6.954s] Computing alignments... [204.162s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (115974363211) exceeds memory limit. [0.069s] Sorting trace points... [7.509s] Computing alignments... [210.469s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (115636564141) exceeds memory limit. [0.069s] Sorting trace points... [7.455s] Computing alignments... [202.612s] Deallocating buffers... [0.112s] Loading trace points... Warning: resident size (113284516561) exceeds memory limit. [0.14s] Sorting trace points... [6.129s] Computing alignments... [201.347s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (113528862481) exceeds memory limit. [0.091s] Sorting trace points... [7.129s] Computing alignments... [201.614s] Deallocating buffers... [0.114s] Loading trace points... Warning: resident size (115282970611) exceeds memory limit. [0.927s] Sorting trace points... [7.622s] Computing alignments... [210.701s] Deallocating buffers... [0.173s] Loading trace points... Warning: resident size (115128397051) exceeds memory limit. [0.078s] Sorting trace points... [5.184s] Computing alignments... [202.901s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (114140142151) exceeds memory limit. [0.046s] Sorting trace points... [6.32s] Computing alignments... [203.785s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115033006681) exceeds memory limit. [0.055s] Sorting trace points... [7.073s] Computing alignments... [207.994s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (116930245711) exceeds memory limit. [0.065s] Sorting trace points... [7.758s] Computing alignments... [215.243s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (116376561271) exceeds memory limit. [0.071s] Sorting trace points... [5.342s] Computing alignments... [205.294s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (114628888651) exceeds memory limit. [0.053s] Sorting trace points... [5.919s] Computing alignments... [206.809s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (114906747466) exceeds memory limit. [0.866s] Sorting trace points... [6.173s] Computing alignments... [206.402s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (116174429041) exceeds memory limit. [0s] Sorting trace points... [5.944s] Computing alignments... [208.357s] Deallocating buffers... [0.131s] Loading trace points... [0s] [3436.18s] Deallocating reference... [0.064s] Loading reference sequences... [29.657s] Masking reference... [30.869s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [33.075s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.895s] Building query seed array... [3.335s] Computing hash join... [5.17s] Masking low complexity seeds... [0.203s] Searching alignments... [1865.42s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.496s] Building query seed array... [3.462s] Computing hash join... [5.22s] Masking low complexity seeds... [0.21s] Searching alignments... [820.058s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.562s] Building query seed array... [3.704s] Computing hash join... [5.166s] Masking low complexity seeds... [0.21s] Searching alignments... [597.594s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.955s] Building query seed array... [2.952s] Computing hash join... [5.071s] Masking low complexity seeds... [0.201s] Searching alignments... [623.015s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.221s] Building query seed array... [2.741s] Computing hash join... [5.069s] Masking low complexity seeds... [0.195s] Searching alignments... [881.283s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.513s] Building query seed array... [3.141s] Computing hash join... [4.873s] Masking low complexity seeds... [0.195s] Searching alignments... [670.175s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.068s] Building query seed array... [3.323s] Computing hash join... [5.028s] Masking low complexity seeds... [0.191s] Searching alignments... [492.762s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.038s] Building query seed array... [2.778s] Computing hash join... [4.975s] Masking low complexity seeds... [0.185s] Searching alignments... [495.377s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [1.912s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [35.406s] Sorting trace points... [7.412s] Computing alignments... [240.241s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (113012677951) exceeds memory limit. [0.078s] Sorting trace points... [6.95s] Computing alignments... [246.102s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114153623146) exceeds memory limit. [0.073s] Sorting trace points... [6.171s] Computing alignments... [246.449s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (116299465321) exceeds memory limit. [0.06s] Sorting trace points... [5.548s] Computing alignments... [254.234s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (115963594636) exceeds memory limit. [0.08s] Sorting trace points... [6.002s] Computing alignments... [244.907s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (113602606186) exceeds memory limit. [0.057s] Sorting trace points... [5.586s] Computing alignments... [242.472s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (113844525886) exceeds memory limit. [0.048s] Sorting trace points... [5.542s] Computing alignments... [242.287s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (115604716366) exceeds memory limit. [0.001s] Sorting trace points... [5.595s] Computing alignments... [258.355s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (115450829086) exceeds memory limit. [0.058s] Sorting trace points... [7.192s] Computing alignments... [244.257s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (114460128661) exceeds memory limit. [0.046s] Sorting trace points... [5.181s] Computing alignments... [246.736s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (115353057016) exceeds memory limit. [0.043s] Sorting trace points... [6.189s] Computing alignments... [249.351s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (117257632516) exceeds memory limit. [0.088s] Sorting trace points... [6.692s] Computing alignments... [259.271s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (116705485741) exceeds memory limit. [0.059s] Sorting trace points... [6.926s] Computing alignments... [246.987s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (114952916941) exceeds memory limit. [0.077s] Sorting trace points... [7.533s] Computing alignments... [246.565s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (115231288096) exceeds memory limit. [0.058s] Sorting trace points... [6.805s] Computing alignments... [247.885s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (116502222376) exceeds memory limit. [0s] Sorting trace points... [5.36s] Computing alignments... [248.672s] Deallocating buffers... [0.145s] Loading trace points... [0s] [4104.03s] Deallocating reference... [0.068s] Loading reference sequences... [243.876s] Masking reference... [31.165s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.519s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.522s] Building query seed array... [3.032s] Computing hash join... [5.178s] Masking low complexity seeds... [0.202s] Searching alignments... [1872.53s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.694s] Building query seed array... [3.471s] Computing hash join... [5.063s] Masking low complexity seeds... [0.203s] Searching alignments... [825.419s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.481s] Building query seed array... [3.614s] Computing hash join... [5.131s] Masking low complexity seeds... [0.206s] Searching alignments... [606.13s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.109s] Building query seed array... [2.975s] Computing hash join... [5.118s] Masking low complexity seeds... [0.207s] Searching alignments... [620.355s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.186s] Building query seed array... [2.774s] Computing hash join... [4.941s] Masking low complexity seeds... [0.188s] Searching alignments... [871.389s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.557s] Building query seed array... [3.102s] Computing hash join... [4.919s] Masking low complexity seeds... [0.19s] Searching alignments... [670.636s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.701s] Building query seed array... [3.313s] Computing hash join... [4.96s] Masking low complexity seeds... [0.193s] Searching alignments... [488.352s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.934s] Building query seed array... [2.874s] Computing hash join... [4.927s] Masking low complexity seeds... [0.185s] Searching alignments... [494.953s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [2.08s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [36.018s] Sorting trace points... [7.285s] Computing alignments... [234.143s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (113342110018) exceeds memory limit. [0.064s] Sorting trace points... [5.245s] Computing alignments... [238.952s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (114493908808) exceeds memory limit. [0.059s] Sorting trace points... [6.744s] Computing alignments... [238.491s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (116650387663) exceeds memory limit. [0.06s] Sorting trace points... [5.612s] Computing alignments... [245.925s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (116308178143) exceeds memory limit. [0.093s] Sorting trace points... [5.729s] Computing alignments... [238.683s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (113934674653) exceeds memory limit. [0.049s] Sorting trace points... [7.058s] Computing alignments... [234.576s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (114181000438) exceeds memory limit. [0.284s] Sorting trace points... [6.336s] Computing alignments... [235.335s] Deallocating buffers... [0.112s] Loading trace points... Warning: resident size (115951018498) exceeds memory limit. [0.054s] Sorting trace points... [5.682s] Computing alignments... [248.954s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115793612218) exceeds memory limit. [0.072s] Sorting trace points... [6.904s] Computing alignments... [238.465s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (114796358353) exceeds memory limit. [0.609s] Sorting trace points... [5.316s] Computing alignments... [237.475s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (115696185643) exceeds memory limit. [0.066s] Sorting trace points... [7.195s] Computing alignments... [241.027s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (117610283683) exceeds memory limit. [0.072s] Sorting trace points... [7.867s] Computing alignments... [253.615s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (117054418378) exceeds memory limit. [0.056s] Sorting trace points... [5.854s] Computing alignments... [240.544s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (115293263758) exceeds memory limit. [0.058s] Sorting trace points... [6.321s] Computing alignments... [243.317s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (115572717433) exceeds memory limit. [0.06s] Sorting trace points... [5.28s] Computing alignments... [240.686s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (116853370558) exceeds memory limit. [0s] Sorting trace points... [7.233s] Computing alignments... [241.459s] Deallocating buffers... [0.131s] Loading trace points... [0s] [3993.27s] Deallocating reference... [0.071s] Loading reference sequences... [30.285s] Masking reference... [30.885s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.992s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.354s] Building query seed array... [3.141s] Computing hash join... [5.172s] Masking low complexity seeds... [0.205s] Searching alignments... [1881.34s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.64s] Building query seed array... [3.497s] Computing hash join... [5.161s] Masking low complexity seeds... [0.21s] Searching alignments... [826.943s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.567s] Building query seed array... [3.7s] Computing hash join... [5.176s] Masking low complexity seeds... [0.201s] Searching alignments... [598.813s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.216s] Building query seed array... [3.047s] Computing hash join... [5.027s] Masking low complexity seeds... [0.206s] Searching alignments... [614.998s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.005s] Building query seed array... [2.793s] Computing hash join... [4.922s] Masking low complexity seeds... [0.19s] Searching alignments... [891.278s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.21s] Building query seed array... [3.159s] Computing hash join... [4.901s] Masking low complexity seeds... [0.188s] Searching alignments... [658.889s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.146s] Building query seed array... [3.283s] Computing hash join... [5.015s] Masking low complexity seeds... [0.193s] Searching alignments... [486.754s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.783s] Building query seed array... [2.846s] Computing hash join... [4.962s] Masking low complexity seeds... [0.206s] Searching alignments... [496.139s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [2.089s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [35.728s] Sorting trace points... [6.326s] Computing alignments... [219.383s] Deallocating buffers... [0.092s] Loading trace points... Warning: resident size (112757841404) exceeds memory limit. [0.08s] Sorting trace points... [7.333s] Computing alignments... [224.828s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (113891478434) exceeds memory limit. [0.076s] Sorting trace points... [6.702s] Computing alignments... [223.978s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (116027752364) exceeds memory limit. [0.736s] Sorting trace points... [5.499s] Computing alignments... [231.722s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (115694154869) exceeds memory limit. [0.06s] Sorting trace points... [6.016s] Computing alignments... [224.35s] Deallocating buffers... [0.123s] Loading trace points... Warning: resident size (113342115119) exceeds memory limit. [0.057s] Sorting trace points... [5.047s] Computing alignments... [222.173s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (113581657064) exceeds memory limit. [0.063s] Sorting trace points... [5.234s] Computing alignments... [222.332s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (115334982659) exceeds memory limit. [0.058s] Sorting trace points... [7.493s] Computing alignments... [232.594s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (115183368464) exceeds memory limit. [0.045s] Sorting trace points... [7.289s] Computing alignments... [223.833s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (114198084794) exceeds memory limit. [0.043s] Sorting trace points... [6.795s] Computing alignments... [225.2s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (115088433389) exceeds memory limit. [0.068s] Sorting trace points... [6.221s] Computing alignments... [228.488s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (116982948014) exceeds memory limit. [0.056s] Sorting trace points... [6.088s] Computing alignments... [235.58s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (116433267539) exceeds memory limit. [0.047s] Sorting trace points... [5.509s] Computing alignments... [225.635s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (114687531224) exceeds memory limit. [0.054s] Sorting trace points... [7.556s] Computing alignments... [226.556s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (114963912719) exceeds memory limit. [0.047s] Sorting trace points... [6.597s] Computing alignments... [227.539s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (116229793334) exceeds memory limit. [0s] Sorting trace points... [7.331s] Computing alignments... [226.248s] Deallocating buffers... [0.147s] Loading trace points... [0s] [3762.86s] Deallocating reference... [0.062s] Loading reference sequences... [23.825s] Masking reference... [26.039s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [25.863s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.505s] Building query seed array... [3.114s] Computing hash join... [4.334s] Masking low complexity seeds... [0.197s] Searching alignments... [1487.26s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.807s] Building query seed array... [3.506s] Computing hash join... [4.304s] Masking low complexity seeds... [0.2s] Searching alignments... [658.968s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.809s] Building query seed array... [3.504s] Computing hash join... [4.302s] Masking low complexity seeds... [0.197s] Searching alignments... [481.061s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.395s] Building query seed array... [3.006s] Computing hash join... [4.242s] Masking low complexity seeds... [0.195s] Searching alignments... [494.18s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.195s] Building query seed array... [2.773s] Computing hash join... [4.1s] Masking low complexity seeds... [0.182s] Searching alignments... [702.028s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.156s] Building query seed array... [3.115s] Computing hash join... [4.038s] Masking low complexity seeds... [0.182s] Searching alignments... [532.317s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.699s] Building query seed array... [3.199s] Computing hash join... [4.122s] Masking low complexity seeds... [0.183s] Searching alignments... [390.634s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.829s] Building query seed array... [2.788s] Computing hash join... [4.083s] Masking low complexity seeds... [0.182s] Searching alignments... [399.043s] Deallocating memory... [0s] Deallocating buffers... [0.117s] Clearing query masking... [1.95s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [29.149s] Sorting trace points... [5.982s] Computing alignments... [170.145s] Deallocating buffers... [0.092s] Loading trace points... [0.052s] Sorting trace points... [5.393s] Computing alignments... [173.759s] Deallocating buffers... [0.095s] Loading trace points... [0.076s] Sorting trace points... [5s] Computing alignments... [174.412s] Deallocating buffers... [0.103s] Loading trace points... [0.055s] Sorting trace points... [4.589s] Computing alignments... [180.234s] Deallocating buffers... [0.11s] Loading trace points... [0.04s] Sorting trace points... [4.608s] Computing alignments... [172.574s] Deallocating buffers... [0.104s] Loading trace points... [0.001s] Sorting trace points... [4.546s] Computing alignments... [171.836s] Deallocating buffers... [0.1s] Loading trace points... [0.054s] Sorting trace points... [4.43s] Computing alignments... [173.148s] Deallocating buffers... [0.109s] Loading trace points... [0.052s] Sorting trace points... [4.642s] Computing alignments... [182.091s] Deallocating buffers... [0.107s] Loading trace points... [0.079s] Sorting trace points... [5.374s] Computing alignments... [173.54s] Deallocating buffers... [0.082s] Loading trace points... [0.091s] Sorting trace points... [4.2s] Computing alignments... [173.601s] Deallocating buffers... [0.103s] Loading trace points... [0.047s] Sorting trace points... [5.546s] Computing alignments... [176.624s] Deallocating buffers... [0.098s] Loading trace points... [0.003s] Sorting trace points... [5.268s] Computing alignments... [184.208s] Deallocating buffers... [0.11s] Loading trace points... [0.064s] Sorting trace points... [5.932s] Computing alignments... [174.549s] Deallocating buffers... [0.095s] Loading trace points... [0.069s] Sorting trace points... [4.731s] Computing alignments... [175.453s] Deallocating buffers... [0.101s] Loading trace points... [0.067s] Sorting trace points... [6.106s] Computing alignments... [175.291s] Deallocating buffers... [0.095s] Loading trace points... [0s] Sorting trace points... [4.841s] Computing alignments... [176.874s] Deallocating buffers... [0.117s] Loading trace points... [0s] [2921.16s] Deallocating reference... [0.055s] Loading reference sequences... [0.089s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [11860.9s] [11860.9s] Deallocating queries... [0.088s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.939s] [3.715s] Closing the database... [0s] Cleaning up... [0s] Total time = 157748s Reported 15687353614 pairwise alignments, 15687353614 HSPs. 9400852 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R1.fastq.gz complete: CH07-08.trimmed.R1.blastx.meganized.daa Now MEGANizing CH07-08.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-08.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (179.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.9s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (23,929.0s) Total reads: 9,400,852 With hits: 9,400,852 Alignments: 10,431,329,042 Assig. Taxonomy: 5,821,863 Assig. SEED: 124,336 Assig. EGGNOG: 23,783 Assig. GTDB: 265,823 Assig. EC: 1,126,063 Assig. INTERPRO2GO: 2,909,457 MinSupport set to: 4700 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,837 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (53.4s) Min-supp. changes: 3,430 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.3s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 156 Class. SEED: 494 Class. EGGNOG: 1,576 Class. GTDB: 48 Class. EC: 2,308 Class. INTERPRO2GO: 8,772 Total time: 24,182s Peak memory: 37.6 of 195.3G MEGANization of CH07-08.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R2.fastq.gz... e48c06c0aaccdd566fa073f89e712a00 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.326s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.742s] Opening the output file... [0s] Loading query sequences... [128.93s] Masking queries... [33.716s] Algorithm: Double-indexed Building query histograms... [26.63s] Loading reference sequences... [29.585s] Masking reference... [30.844s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.788s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.469s] Building query seed array... [3.077s] Computing hash join... [5.419s] Masking low complexity seeds... [0.211s] Searching alignments... [1962s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.397s] Building query seed array... [3.516s] Computing hash join... [5.117s] Masking low complexity seeds... [0.2s] Searching alignments... [857.844s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.588s] Building query seed array... [3.583s] Computing hash join... [5.176s] Masking low complexity seeds... [0.201s] Searching alignments... [636.794s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.669s] Building query seed array... [2.965s] Computing hash join... [4.974s] Masking low complexity seeds... [0.199s] Searching alignments... [636.537s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.883s] Building query seed array... [2.754s] Computing hash join... [4.952s] Masking low complexity seeds... [0.193s] Searching alignments... [930.462s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.003s] Building query seed array... [3.217s] Computing hash join... [4.898s] Masking low complexity seeds... [0.196s] Searching alignments... [709.87s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.355s] Building query seed array... [3.323s] Computing hash join... [4.882s] Masking low complexity seeds... [0.192s] Searching alignments... [499.605s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.2s] Building query seed array... [2.815s] Computing hash join... [5.003s] Masking low complexity seeds... [0.189s] Searching alignments... [523.348s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.069s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [36.626s] Sorting trace points... [7.763s] Computing alignments... [224.308s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (114699849539) exceeds memory limit. [0.052s] Sorting trace points... [7.539s] Computing alignments... [222.969s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (115555842029) exceeds memory limit. [0.073s] Sorting trace points... [7.475s] Computing alignments... [224.335s] Deallocating buffers... [0.123s] Loading trace points... Warning: resident size (117179003714) exceeds memory limit. [0.061s] Sorting trace points... [5.726s] Computing alignments... [229.69s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (116878134809) exceeds memory limit. [0.001s] Sorting trace points... [6.265s] Computing alignments... [224.975s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (115165661159) exceeds memory limit. [0.053s] Sorting trace points... [5.801s] Computing alignments... [221.926s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (115296531554) exceeds memory limit. [0.08s] Sorting trace points... [7.656s] Computing alignments... [223.809s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (116518156484) exceeds memory limit. [0.065s] Sorting trace points... [7.596s] Computing alignments... [228.398s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (116159075894) exceeds memory limit. [0.043s] Sorting trace points... [7.162s] Computing alignments... [222.132s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115288719614) exceeds memory limit. [0.062s] Sorting trace points... [7.653s] Computing alignments... [225.522s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115957856849) exceeds memory limit. [0.166s] Sorting trace points... [6.655s] Computing alignments... [226.692s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (117590857214) exceeds memory limit. [0.082s] Sorting trace points... [7.782s] Computing alignments... [233.551s] Deallocating buffers... [0.095s] Loading trace points... Warning: resident size (117171246569) exceeds memory limit. [0.054s] Sorting trace points... [7.163s] Computing alignments... [225.825s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (115526465834) exceeds memory limit. [0.066s] Sorting trace points... [6.252s] Computing alignments... [226.859s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (115212860024) exceeds memory limit. [0.047s] Sorting trace points... [6.008s] Computing alignments... [225.695s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (115067695829) exceeds memory limit. [0s] Sorting trace points... [6.893s] Computing alignments... [217.706s] Deallocating buffers... [0.121s] Loading trace points... [0s] [3755.47s] Deallocating reference... [0.068s] Loading reference sequences... [33.551s] Masking reference... [31.45s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.713s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.025s] Building query seed array... [3.076s] Computing hash join... [5.086s] Masking low complexity seeds... [0.196s] Searching alignments... [1942.8s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.764s] Building query seed array... [3.42s] Computing hash join... [5.071s] Masking low complexity seeds... [0.197s] Searching alignments... [846.084s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.431s] Building query seed array... [3.62s] Computing hash join... [5.069s] Masking low complexity seeds... [0.197s] Searching alignments... [610.164s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.966s] Building query seed array... [2.96s] Computing hash join... [5.016s] Masking low complexity seeds... [0.2s] Searching alignments... [623.845s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.014s] Building query seed array... [2.768s] Computing hash join... [4.936s] Masking low complexity seeds... [0.193s] Searching alignments... [907.044s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.605s] Building query seed array... [3.197s] Computing hash join... [4.804s] Masking low complexity seeds... [0.183s] Searching alignments... [691.995s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.398s] Building query seed array... [3.268s] Computing hash join... [4.893s] Masking low complexity seeds... [0.193s] Searching alignments... [493.617s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.399s] Building query seed array... [2.83s] Computing hash join... [5.039s] Masking low complexity seeds... [0.198s] Searching alignments... [516.301s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [2.059s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [36.361s] Sorting trace points... [7.942s] Computing alignments... [235.08s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (114201823559) exceeds memory limit. [0.068s] Sorting trace points... [6.874s] Computing alignments... [234.245s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115052687054) exceeds memory limit. [0.096s] Sorting trace points... [6.594s] Computing alignments... [232.051s] Deallocating buffers... [0.163s] Loading trace points... Warning: resident size (116669072234) exceeds memory limit. [0.063s] Sorting trace points... [7.004s] Computing alignments... [241.238s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (116369970974) exceeds memory limit. [0.051s] Sorting trace points... [6.68s] Computing alignments... [236.114s] Deallocating buffers... [0.163s] Loading trace points... Warning: resident size (114663725579) exceeds memory limit. [0.065s] Sorting trace points... [5.448s] Computing alignments... [233.394s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (114795470849) exceeds memory limit. [0.096s] Sorting trace points... [5.45s] Computing alignments... [234.988s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (116010089474) exceeds memory limit. [0.067s] Sorting trace points... [7.574s] Computing alignments... [239.267s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (115652509604) exceeds memory limit. [0.944s] Sorting trace points... [5.33s] Computing alignments... [230.719s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (114787338269) exceeds memory limit. [0.098s] Sorting trace points... [5.892s] Computing alignments... [235.987s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (115449664919) exceeds memory limit. [0.949s] Sorting trace points... [5.568s] Computing alignments... [237.452s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (117070561934) exceeds memory limit. [0.072s] Sorting trace points... [7.228s] Computing alignments... [243.711s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (116654218109) exceeds memory limit. [0.092s] Sorting trace points... [7.273s] Computing alignments... [237.303s] Deallocating buffers... [0.163s] Loading trace points... Warning: resident size (115021339334) exceeds memory limit. [0.066s] Sorting trace points... [7.055s] Computing alignments... [237.766s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (114711771344) exceeds memory limit. [0.061s] Sorting trace points... [6.206s] Computing alignments... [236.163s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (114571483619) exceeds memory limit. [0s] Sorting trace points... [5.143s] Computing alignments... [227.165s] Deallocating buffers... [0.15s] Loading trace points... [0s] [3917.97s] Deallocating reference... [0.071s] Loading reference sequences... [29.507s] Masking reference... [30.959s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.408s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.62s] Building query seed array... [3.138s] Computing hash join... [5.187s] Masking low complexity seeds... [0.2s] Searching alignments... [1957.84s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.339s] Building query seed array... [3.493s] Computing hash join... [5.095s] Masking low complexity seeds... [0.197s] Searching alignments... [847.763s] Deallocating memory... [0.004s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.854s] Building query seed array... [3.508s] Computing hash join... [5.075s] Masking low complexity seeds... [0.2s] Searching alignments... [619.385s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.126s] Building query seed array... [3.002s] Computing hash join... [5.07s] Masking low complexity seeds... [0.205s] Searching alignments... [621.999s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.993s] Building query seed array... [2.759s] Computing hash join... [4.914s] Masking low complexity seeds... [0.186s] Searching alignments... [916.609s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.138s] Building query seed array... [3.129s] Computing hash join... [4.91s] Masking low complexity seeds... [0.195s] Searching alignments... [695.009s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.441s] Building query seed array... [3.283s] Computing hash join... [4.914s] Masking low complexity seeds... [0.187s] Searching alignments... [500.02s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.656s] Building query seed array... [2.884s] Computing hash join... [4.876s] Masking low complexity seeds... [0.186s] Searching alignments... [519.637s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [2.143s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [36.545s] Sorting trace points... [7.565s] Computing alignments... [233.592s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (113951180257) exceeds memory limit. [0.085s] Sorting trace points... [5.75s] Computing alignments... [231.67s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (114795638047) exceeds memory limit. [0.066s] Sorting trace points... [5.432s] Computing alignments... [231.678s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (116403539602) exceeds memory limit. [0.066s] Sorting trace points... [6.13s] Computing alignments... [240.609s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (116108430307) exceeds memory limit. [0.069s] Sorting trace points... [6.998s] Computing alignments... [234.477s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114411078307) exceeds memory limit. [0.068s] Sorting trace points... [6.745s] Computing alignments... [231.614s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (114538837552) exceeds memory limit. [0.094s] Sorting trace points... [6.399s] Computing alignments... [233.332s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (115749428872) exceeds memory limit. [0.076s] Sorting trace points... [7.328s] Computing alignments... [235.792s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (115394332087) exceeds memory limit. [0.077s] Sorting trace points... [6.102s] Computing alignments... [230.339s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114531685912) exceeds memory limit. [0.059s] Sorting trace points... [5.347s] Computing alignments... [234.842s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (115189143142) exceeds memory limit. [0.06s] Sorting trace points... [5.449s] Computing alignments... [237.91s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (116807381737) exceeds memory limit. [0.103s] Sorting trace points... [6.907s] Computing alignments... [240.965s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (116395585147) exceeds memory limit. [0.059s] Sorting trace points... [6.736s] Computing alignments... [234.618s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (114768405487) exceeds memory limit. [0.06s] Sorting trace points... [7.587s] Computing alignments... [235.669s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114459028507) exceeds memory limit. [0.065s] Sorting trace points... [7.432s] Computing alignments... [234.271s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114311654017) exceeds memory limit. [0s] Sorting trace points... [5.144s] Computing alignments... [224.565s] Deallocating buffers... [0.147s] Loading trace points... [0s] [3888.96s] Deallocating reference... [0.07s] Loading reference sequences... [29.702s] Masking reference... [30.863s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.114s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.527s] Building query seed array... [3.046s] Computing hash join... [5.103s] Masking low complexity seeds... [0.196s] Searching alignments... [1966.89s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.527s] Building query seed array... [3.549s] Computing hash join... [5.112s] Masking low complexity seeds... [0.203s] Searching alignments... [845.89s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.755s] Building query seed array... [3.498s] Computing hash join... [5.224s] Masking low complexity seeds... [0.201s] Searching alignments... [623.117s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.223s] Building query seed array... [2.909s] Computing hash join... [5.102s] Masking low complexity seeds... [0.196s] Searching alignments... [634.503s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.265s] Building query seed array... [2.737s] Computing hash join... [5.056s] Masking low complexity seeds... [0.188s] Searching alignments... [921.319s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.619s] Building query seed array... [3.143s] Computing hash join... [4.953s] Masking low complexity seeds... [0.2s] Searching alignments... [707.062s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.246s] Building query seed array... [3.426s] Computing hash join... [4.927s] Masking low complexity seeds... [0.192s] Searching alignments... [499.934s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.73s] Building query seed array... [2.813s] Computing hash join... [4.975s] Masking low complexity seeds... [0.208s] Searching alignments... [519.921s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [2.089s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [36.964s] Sorting trace points... [5.358s] Computing alignments... [228.553s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114559049036) exceeds memory limit. [0.065s] Sorting trace points... [5.663s] Computing alignments... [227.195s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115409760176) exceeds memory limit. [0.08s] Sorting trace points... [6.903s] Computing alignments... [227.161s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (117028606076) exceeds memory limit. [0.083s] Sorting trace points... [5.827s] Computing alignments... [235.728s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (116730378191) exceeds memory limit. [0.073s] Sorting trace points... [6.935s] Computing alignments... [229.296s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115021063466) exceeds memory limit. [0.065s] Sorting trace points... [5.636s] Computing alignments... [226.121s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (115148762921) exceeds memory limit. [0.054s] Sorting trace points... [7.622s] Computing alignments... [229.488s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (116369315681) exceeds memory limit. [0.198s] Sorting trace points... [5.598s] Computing alignments... [231.951s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (116011901171) exceeds memory limit. [0.817s] Sorting trace points... [5.688s] Computing alignments... [224.424s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (115141133156) exceeds memory limit. [0.087s] Sorting trace points... [5.783s] Computing alignments... [229.8s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (115803985211) exceeds memory limit. [0.071s] Sorting trace points... [6.815s] Computing alignments... [231.722s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (117435338966) exceeds memory limit. [0.074s] Sorting trace points... [7.824s] Computing alignments... [236.265s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (117019299071) exceeds memory limit. [0.067s] Sorting trace points... [6.366s] Computing alignments... [231.314s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115377959666) exceeds memory limit. [0.091s] Sorting trace points... [6.834s] Computing alignments... [231.016s] Deallocating buffers... [0.119s] Loading trace points... Warning: resident size (115067164226) exceeds memory limit. [0.073s] Sorting trace points... [7.195s] Computing alignments... [229.473s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114920281376) exceeds memory limit. [0s] Sorting trace points... [7.298s] Computing alignments... [221.857s] Deallocating buffers... [0.119s] Loading trace points... [0s] [3815.86s] Deallocating reference... [0.069s] Loading reference sequences... [243.498s] Masking reference... [31.062s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.244s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.424s] Building query seed array... [3.139s] Computing hash join... [5.151s] Masking low complexity seeds... [0.2s] Searching alignments... [1938.17s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.063s] Building query seed array... [3.458s] Computing hash join... [5.095s] Masking low complexity seeds... [0.2s] Searching alignments... [848.311s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.295s] Building query seed array... [3.639s] Computing hash join... [5.168s] Masking low complexity seeds... [0.209s] Searching alignments... [613.421s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.024s] Building query seed array... [2.959s] Computing hash join... [5.147s] Masking low complexity seeds... [0.203s] Searching alignments... [629.461s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.043s] Building query seed array... [2.761s] Computing hash join... [4.983s] Masking low complexity seeds... [0.191s] Searching alignments... [922.009s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.889s] Building query seed array... [3.163s] Computing hash join... [4.869s] Masking low complexity seeds... [0.186s] Searching alignments... [702.068s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.178s] Building query seed array... [3.365s] Computing hash join... [5.019s] Masking low complexity seeds... [0.189s] Searching alignments... [497.126s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.075s] Building query seed array... [2.806s] Computing hash join... [4.881s] Masking low complexity seeds... [0.185s] Searching alignments... [522.963s] Deallocating memory... [0s] Deallocating buffers... [0.147s] Clearing query masking... [2.004s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [36.429s] Sorting trace points... [7.651s] Computing alignments... [242.596s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (114447528132) exceeds memory limit. [0.057s] Sorting trace points... [6.809s] Computing alignments... [241.759s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (115299316932) exceeds memory limit. [0.056s] Sorting trace points... [5.486s] Computing alignments... [239.575s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (116918944527) exceeds memory limit. [0.049s] Sorting trace points... [7.366s] Computing alignments... [250.54s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (116619984582) exceeds memory limit. [0.002s] Sorting trace points... [5.625s] Computing alignments... [242.678s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (114907031157) exceeds memory limit. [0.278s] Sorting trace points... [5.304s] Computing alignments... [241.285s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (115037371917) exceeds memory limit. [0.07s] Sorting trace points... [7.12s] Computing alignments... [242.789s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (116259318177) exceeds memory limit. [0.077s] Sorting trace points... [7.302s] Computing alignments... [246.876s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (115902641712) exceeds memory limit. [0.069s] Sorting trace points... [7.377s] Computing alignments... [238.962s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (115033593402) exceeds memory limit. [0.079s] Sorting trace points... [6.818s] Computing alignments... [243.839s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (115697708532) exceeds memory limit. [0.086s] Sorting trace points... [5.635s] Computing alignments... [246.865s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (117325805787) exceeds memory limit. [0.343s] Sorting trace points... [6.016s] Computing alignments... [251.075s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (116908745367) exceeds memory limit. [0.061s] Sorting trace points... [6.027s] Computing alignments... [245.221s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115271197212) exceeds memory limit. [0.06s] Sorting trace points... [5.724s] Computing alignments... [244.242s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (114959810127) exceeds memory limit. [0.059s] Sorting trace points... [6.839s] Computing alignments... [244.535s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114816716397) exceeds memory limit. [0s] Sorting trace points... [7.015s] Computing alignments... [233.644s] Deallocating buffers... [0.132s] Loading trace points... [0s] [4040.71s] Deallocating reference... [0.076s] Loading reference sequences... [244.197s] Masking reference... [30.828s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.268s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.023s] Building query seed array... [3.069s] Computing hash join... [5.094s] Masking low complexity seeds... [0.201s] Searching alignments... [1921.67s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.088s] Building query seed array... [3.528s] Computing hash join... [5.104s] Masking low complexity seeds... [0.211s] Searching alignments... [848.316s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.523s] Building query seed array... [3.62s] Computing hash join... [5.109s] Masking low complexity seeds... [0.199s] Searching alignments... [610.75s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.954s] Building query seed array... [2.972s] Computing hash join... [5.093s] Masking low complexity seeds... [0.203s] Searching alignments... [632.017s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.073s] Building query seed array... [2.751s] Computing hash join... [4.898s] Masking low complexity seeds... [0.187s] Searching alignments... [904.673s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.717s] Building query seed array... [3.202s] Computing hash join... [4.859s] Masking low complexity seeds... [0.178s] Searching alignments... [691.703s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.444s] Building query seed array... [3.362s] Computing hash join... [4.975s] Masking low complexity seeds... [0.187s] Searching alignments... [496.806s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.068s] Building query seed array... [2.817s] Computing hash join... [4.884s] Masking low complexity seeds... [0.191s] Searching alignments... [517.178s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [2.081s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [36.256s] Sorting trace points... [7.612s] Computing alignments... [232.296s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (114044521621) exceeds memory limit. [0.085s] Sorting trace points... [6.835s] Computing alignments... [232.939s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114891791521) exceeds memory limit. [0.074s] Sorting trace points... [7.581s] Computing alignments... [232.56s] Deallocating buffers... [0.111s] Loading trace points... Warning: resident size (116500305901) exceeds memory limit. [0.081s] Sorting trace points... [5.59s] Computing alignments... [241.202s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (116202467281) exceeds memory limit. [0.063s] Sorting trace points... [5.782s] Computing alignments... [235.309s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (114501942841) exceeds memory limit. [0.096s] Sorting trace points... [5.231s] Computing alignments... [232.516s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (114632145286) exceeds memory limit. [0.068s] Sorting trace points... [6.568s] Computing alignments... [233.438s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (115843569481) exceeds memory limit. [0.052s] Sorting trace points... [6.765s] Computing alignments... [237.256s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (115486496506) exceeds memory limit. [0.055s] Sorting trace points... [5.611s] Computing alignments... [231.109s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (114624889591) exceeds memory limit. [0.079s] Sorting trace points... [7.179s] Computing alignments... [233.924s] Deallocating buffers... [0.119s] Loading trace points... Warning: resident size (115286414461) exceeds memory limit. [0.075s] Sorting trace points... [6.521s] Computing alignments... [237.708s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (116903900866) exceeds memory limit. [0.001s] Sorting trace points... [5.668s] Computing alignments... [242.236s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (116489868376) exceeds memory limit. [0.001s] Sorting trace points... [6.739s] Computing alignments... [235.172s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (114861492481) exceeds memory limit. [0.073s] Sorting trace points... [6.99s] Computing alignments... [235.467s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (114552210091) exceeds memory limit. [0.001s] Sorting trace points... [7.4s] Computing alignments... [234.999s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (114408683401) exceeds memory limit. [0s] Sorting trace points... [6.19s] Computing alignments... [226.351s] Deallocating buffers... [0.135s] Loading trace points... [0s] [3898.01s] Deallocating reference... [0.063s] Loading reference sequences... [31.674s] Masking reference... [32.135s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.966s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.672s] Building query seed array... [3.042s] Computing hash join... [5.108s] Masking low complexity seeds... [0.196s] Searching alignments... [1923.02s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.6s] Building query seed array... [3.543s] Computing hash join... [5.083s] Masking low complexity seeds... [0.208s] Searching alignments... [845.703s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.042s] Building query seed array... [3.631s] Computing hash join... [5.073s] Masking low complexity seeds... [0.199s] Searching alignments... [612.587s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.268s] Building query seed array... [3.006s] Computing hash join... [5.126s] Masking low complexity seeds... [0.204s] Searching alignments... [625.204s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.071s] Building query seed array... [2.767s] Computing hash join... [4.867s] Masking low complexity seeds... [0.194s] Searching alignments... [914.373s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.117s] Building query seed array... [3.138s] Computing hash join... [4.895s] Masking low complexity seeds... [0.193s] Searching alignments... [690.766s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.419s] Building query seed array... [3.243s] Computing hash join... [4.95s] Masking low complexity seeds... [0.189s] Searching alignments... [496.891s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.741s] Building query seed array... [2.808s] Computing hash join... [5.012s] Masking low complexity seeds... [0.196s] Searching alignments... [519.697s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [2.086s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [36.211s] Sorting trace points... [7.833s] Computing alignments... [234.48s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (114101552082) exceeds memory limit. [0.063s] Sorting trace points... [7.59s] Computing alignments... [235.225s] Deallocating buffers... [0.117s] Loading trace points... Warning: resident size (114951541437) exceeds memory limit. [0.076s] Sorting trace points... [7.501s] Computing alignments... [234.52s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (116561828142) exceeds memory limit. [0.075s] Sorting trace points... [6.221s] Computing alignments... [244.606s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (116263942782) exceeds memory limit. [0.087s] Sorting trace points... [7.492s] Computing alignments... [238.143s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (114563942787) exceeds memory limit. [0.082s] Sorting trace points... [5.288s] Computing alignments... [234.472s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114693748137) exceeds memory limit. [0.094s] Sorting trace points... [5.724s] Computing alignments... [236.665s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (115905436572) exceeds memory limit. [0.061s] Sorting trace points... [6.32s] Computing alignments... [239.654s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (115548897237) exceeds memory limit. [0.05s] Sorting trace points... [5.748s] Computing alignments... [233.093s] Deallocating buffers... [0.1s] Loading trace points... Warning: resident size (114685451262) exceeds memory limit. [0.079s] Sorting trace points... [7.389s] Computing alignments... [236.898s] Deallocating buffers... [0.115s] Loading trace points... Warning: resident size (115347417972) exceeds memory limit. [0.062s] Sorting trace points... [7.37s] Computing alignments... [239.312s] Deallocating buffers... [0.156s] Loading trace points... Warning: resident size (116967988617) exceeds memory limit. [0.064s] Sorting trace points... [6.671s] Computing alignments... [244.621s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (116553604707) exceeds memory limit. [0.048s] Sorting trace points... [6.373s] Computing alignments... [238.533s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114923101242) exceeds memory limit. [0.001s] Sorting trace points... [6.93s] Computing alignments... [238.548s] Deallocating buffers... [0.119s] Loading trace points... Warning: resident size (114611736942) exceeds memory limit. [0.048s] Sorting trace points... [7.036s] Computing alignments... [237.629s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (114467786982) exceeds memory limit. [0s] Sorting trace points... [6.123s] Computing alignments... [230.117s] Deallocating buffers... [0.12s] Loading trace points... [0s] [3943.32s] Deallocating reference... [0.067s] Loading reference sequences... [29.611s] Masking reference... [32.232s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.878s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.272s] Building query seed array... [2.993s] Computing hash join... [5.128s] Masking low complexity seeds... [0.195s] Searching alignments... [1929.1s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.296s] Building query seed array... [3.496s] Computing hash join... [5.159s] Masking low complexity seeds... [0.207s] Searching alignments... [842.352s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.141s] Building query seed array... [3.6s] Computing hash join... [5.043s] Masking low complexity seeds... [0.197s] Searching alignments... [617.963s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.029s] Building query seed array... [2.989s] Computing hash join... [4.976s] Masking low complexity seeds... [0.203s] Searching alignments... [619.899s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.455s] Building query seed array... [2.786s] Computing hash join... [4.893s] Masking low complexity seeds... [0.193s] Searching alignments... [917.298s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.401s] Building query seed array... [3.074s] Computing hash join... [4.945s] Masking low complexity seeds... [0.188s] Searching alignments... [690.652s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.122s] Building query seed array... [3.326s] Computing hash join... [4.971s] Masking low complexity seeds... [0.196s] Searching alignments... [499.306s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.835s] Building query seed array... [2.792s] Computing hash join... [4.908s] Masking low complexity seeds... [0.191s] Searching alignments... [518.126s] Deallocating memory... [0s] Deallocating buffers... [0.147s] Clearing query masking... [2.002s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [36.406s] Sorting trace points... [7.881s] Computing alignments... [224.059s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (113801666133) exceeds memory limit. [0.046s] Sorting trace points... [7.325s] Computing alignments... [222.624s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114642931863) exceeds memory limit. [0.078s] Sorting trace points... [6.549s] Computing alignments... [224.212s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (116245042068) exceeds memory limit. [0.002s] Sorting trace points... [6.243s] Computing alignments... [232.194s] Deallocating buffers... [0.111s] Loading trace points... Warning: resident size (115950791433) exceeds memory limit. [0.067s] Sorting trace points... [6.845s] Computing alignments... [225.74s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114259824828) exceeds memory limit. [0.08s] Sorting trace points... [6.941s] Computing alignments... [222.976s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (114388340523) exceeds memory limit. [0.055s] Sorting trace points... [5.427s] Computing alignments... [225.385s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (115593850473) exceeds memory limit. [0.057s] Sorting trace points... [7.157s] Computing alignments... [228.993s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (115240156593) exceeds memory limit. [0.932s] Sorting trace points... [7.446s] Computing alignments... [221.828s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114379647783) exceeds memory limit. [0.048s] Sorting trace points... [7.72s] Computing alignments... [224.543s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (115036068408) exceeds memory limit. [0.116s] Sorting trace points... [7.39s] Computing alignments... [228.413s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (116649789993) exceeds memory limit. [0.062s] Sorting trace points... [6.083s] Computing alignments... [233.652s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (116236813008) exceeds memory limit. [0.045s] Sorting trace points... [6.443s] Computing alignments... [227.687s] Deallocating buffers... [0.119s] Loading trace points... Warning: resident size (114613344063) exceeds memory limit. [0.001s] Sorting trace points... [5.271s] Computing alignments... [227.022s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (114304951278) exceeds memory limit. [0.069s] Sorting trace points... [6.078s] Computing alignments... [227.155s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (114158611083) exceeds memory limit. [0s] Sorting trace points... [5.715s] Computing alignments... [218.122s] Deallocating buffers... [0.122s] Loading trace points... [0s] [3761.29s] Deallocating reference... [0.072s] Loading reference sequences... [33.318s] Masking reference... [31.055s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.101s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.182s] Building query seed array... [3.119s] Computing hash join... [5.171s] Masking low complexity seeds... [0.201s] Searching alignments... [1952.23s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.835s] Building query seed array... [3.392s] Computing hash join... [5.197s] Masking low complexity seeds... [0.201s] Searching alignments... [852.659s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.395s] Building query seed array... [3.572s] Computing hash join... [5.092s] Masking low complexity seeds... [0.199s] Searching alignments... [618.828s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.06s] Building query seed array... [2.973s] Computing hash join... [5.039s] Masking low complexity seeds... [0.195s] Searching alignments... [624.208s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.064s] Building query seed array... [2.826s] Computing hash join... [4.923s] Masking low complexity seeds... [0.188s] Searching alignments... [930.185s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.471s] Building query seed array... [3.136s] Computing hash join... [4.891s] Masking low complexity seeds... [0.182s] Searching alignments... [704.02s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.199s] Building query seed array... [3.305s] Computing hash join... [4.942s] Masking low complexity seeds... [0.192s] Searching alignments... [502.092s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.81s] Building query seed array... [2.853s] Computing hash join... [4.843s] Masking low complexity seeds... [0.196s] Searching alignments... [524.776s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.012s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [36.291s] Sorting trace points... [7.23s] Computing alignments... [229.664s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (114215950071) exceeds memory limit. [0.069s] Sorting trace points... [6.109s] Computing alignments... [229.082s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (115062456186) exceeds memory limit. [0.042s] Sorting trace points... [6.988s] Computing alignments... [225.625s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (116673183111) exceeds memory limit. [0.057s] Sorting trace points... [5.764s] Computing alignments... [235.213s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (116376664866) exceeds memory limit. [0.063s] Sorting trace points... [6.377s] Computing alignments... [228.34s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (114673679061) exceeds memory limit. [0.067s] Sorting trace points... [6.24s] Computing alignments... [225.726s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114800432421) exceeds memory limit. [0.09s] Sorting trace points... [7.379s] Computing alignments... [228.493s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (116016098301) exceeds memory limit. [0.069s] Sorting trace points... [6.77s] Computing alignments... [231.622s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (115661148456) exceeds memory limit. [0.091s] Sorting trace points... [5.456s] Computing alignments... [224.786s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114796999881) exceeds memory limit. [0.059s] Sorting trace points... [5.293s] Computing alignments... [230.303s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115457389041) exceeds memory limit. [1.055s] Sorting trace points... [5.503s] Computing alignments... [232.951s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (117081827391) exceeds memory limit. [0.053s] Sorting trace points... [6.5s] Computing alignments... [237.487s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (116667348471) exceeds memory limit. [0.063s] Sorting trace points... [6.303s] Computing alignments... [231.632s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (115031611146) exceeds memory limit. [0.055s] Sorting trace points... [7.516s] Computing alignments... [231.215s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114722105076) exceeds memory limit. [0.064s] Sorting trace points... [7.104s] Computing alignments... [231.238s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114574944501) exceeds memory limit. [0s] Sorting trace points... [5.492s] Computing alignments... [222.221s] Deallocating buffers... [0.136s] Loading trace points... [0s] [3818.12s] Deallocating reference... [0.088s] Loading reference sequences... [29.71s] Masking reference... [30.856s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.011s] Building reference histograms... [32.515s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.509s] Building query seed array... [3.028s] Computing hash join... [5.21s] Masking low complexity seeds... [0.197s] Searching alignments... [1937.81s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.949s] Building query seed array... [3.518s] Computing hash join... [5.118s] Masking low complexity seeds... [0.206s] Searching alignments... [847.384s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.672s] Building query seed array... [3.618s] Computing hash join... [5.164s] Masking low complexity seeds... [0.197s] Searching alignments... [609.832s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.989s] Building query seed array... [2.977s] Computing hash join... [5.125s] Masking low complexity seeds... [0.207s] Searching alignments... [631.444s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.259s] Building query seed array... [2.704s] Computing hash join... [4.829s] Masking low complexity seeds... [0.185s] Searching alignments... [920.865s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.459s] Building query seed array... [3.241s] Computing hash join... [4.82s] Masking low complexity seeds... [0.182s] Searching alignments... [692.601s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.493s] Building query seed array... [3.3s] Computing hash join... [4.88s] Masking low complexity seeds... [0.188s] Searching alignments... [498.452s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.868s] Building query seed array... [2.794s] Computing hash join... [4.972s] Masking low complexity seeds... [0.196s] Searching alignments... [524.509s] Deallocating memory... [0s] Deallocating buffers... [0.146s] Clearing query masking... [2.007s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [36.612s] Sorting trace points... [6.679s] Computing alignments... [205.708s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (114050190773) exceeds memory limit. [0.105s] Sorting trace points... [5.318s] Computing alignments... [204.813s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (114897434858) exceeds memory limit. [0.067s] Sorting trace points... [7.544s] Computing alignments... [206.162s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (116509933823) exceeds memory limit. [0.09s] Sorting trace points... [7.883s] Computing alignments... [212.045s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (116212580213) exceeds memory limit. [0.998s] Sorting trace points... [5.426s] Computing alignments... [207.574s] Deallocating buffers... [0.123s] Loading trace points... Warning: resident size (114510963578) exceeds memory limit. [0.074s] Sorting trace points... [5.363s] Computing alignments... [205.54s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114642073208) exceeds memory limit. [0.053s] Sorting trace points... [6.319s] Computing alignments... [207.036s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (115854691073) exceeds memory limit. [0.07s] Sorting trace points... [5.571s] Computing alignments... [211.03s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (115498452563) exceeds memory limit. [0.042s] Sorting trace points... [7.61s] Computing alignments... [205.801s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (114633476303) exceeds memory limit. [0.055s] Sorting trace points... [5.538s] Computing alignments... [208.228s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (115293242963) exceeds memory limit. [0.075s] Sorting trace points... [5.161s] Computing alignments... [209.688s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (116913628568) exceeds memory limit. [0.001s] Sorting trace points... [5.475s] Computing alignments... [214.326s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (116498485028) exceeds memory limit. [0.001s] Sorting trace points... [7.694s] Computing alignments... [207.99s] Deallocating buffers... [0.119s] Loading trace points... Warning: resident size (114867473228) exceeds memory limit. [0.073s] Sorting trace points... [5.277s] Computing alignments... [209.371s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114558540593) exceeds memory limit. [0.002s] Sorting trace points... [5.945s] Computing alignments... [207.477s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (114416484728) exceeds memory limit. [0s] Sorting trace points... [7.137s] Computing alignments... [201.905s] Deallocating buffers... [0.143s] Loading trace points... [0s] [3465.16s] Deallocating reference... [0.068s] Loading reference sequences... [29.842s] Masking reference... [32.149s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.009s] Building reference histograms... [32.552s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.347s] Building query seed array... [3.023s] Computing hash join... [5.166s] Masking low complexity seeds... [0.198s] Searching alignments... [1950.14s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.713s] Building query seed array... [3.461s] Computing hash join... [5.096s] Masking low complexity seeds... [0.205s] Searching alignments... [849.157s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.344s] Building query seed array... [3.61s] Computing hash join... [5.138s] Masking low complexity seeds... [0.197s] Searching alignments... [633.948s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.028s] Building query seed array... [3.076s] Computing hash join... [5.041s] Masking low complexity seeds... [0.21s] Searching alignments... [633.961s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.824s] Building query seed array... [2.674s] Computing hash join... [5.043s] Masking low complexity seeds... [0.2s] Searching alignments... [937.486s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.923s] Building query seed array... [3.091s] Computing hash join... [4.975s] Masking low complexity seeds... [0.19s] Searching alignments... [714.445s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.168s] Building query seed array... [3.291s] Computing hash join... [4.973s] Masking low complexity seeds... [0.197s] Searching alignments... [500.816s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.021s] Building query seed array... [2.805s] Computing hash join... [4.852s] Masking low complexity seeds... [0.185s] Searching alignments... [532.124s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.962s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [36.875s] Sorting trace points... [6.84s] Computing alignments... [249.518s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (114371184128) exceeds memory limit. [0.051s] Sorting trace points... [6.117s] Computing alignments... [249.773s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (115221933053) exceeds memory limit. [0.07s] Sorting trace points... [5.725s] Computing alignments... [246.276s] Deallocating buffers... [0.155s] Loading trace points... Warning: resident size (116837855138) exceeds memory limit. [0.001s] Sorting trace points... [5.448s] Computing alignments... [257.566s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (116540620808) exceeds memory limit. [0.089s] Sorting trace points... [7.181s] Computing alignments... [249.439s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (114836714648) exceeds memory limit. [0.07s] Sorting trace points... [5.808s] Computing alignments... [247.429s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114967525943) exceeds memory limit. [0.053s] Sorting trace points... [5.46s] Computing alignments... [251.257s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (116181785438) exceeds memory limit. [0.095s] Sorting trace points... [6.637s] Computing alignments... [254.125s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (115823027303) exceeds memory limit. [0.056s] Sorting trace points... [7.688s] Computing alignments... [245.344s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114955351688) exceeds memory limit. [0.044s] Sorting trace points... [5.381s] Computing alignments... [251.124s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (115617538763) exceeds memory limit. [0.937s] Sorting trace points... [7.093s] Computing alignments... [253.73s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (117246219578) exceeds memory limit. [0.058s] Sorting trace points... [6.254s] Computing alignments... [258.747s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (116830324463) exceeds memory limit. [0.054s] Sorting trace points... [7.498s] Computing alignments... [252.319s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (115193391128) exceeds memory limit. [0s] Sorting trace points... [6.506s] Computing alignments... [252.658s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (114883208108) exceeds memory limit. [0.081s] Sorting trace points... [6.483s] Computing alignments... [250.805s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (114737415728) exceeds memory limit. [0s] Sorting trace points... [7.466s] Computing alignments... [241.167s] Deallocating buffers... [0.126s] Loading trace points... [0s] [4155.72s] Deallocating reference... [0.07s] Loading reference sequences... [241.008s] Masking reference... [30.891s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.298s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.482s] Building query seed array... [3.054s] Computing hash join... [5.218s] Masking low complexity seeds... [0.214s] Searching alignments... [1947.8s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.367s] Building query seed array... [3.468s] Computing hash join... [5.133s] Masking low complexity seeds... [0.2s] Searching alignments... [855.325s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.356s] Building query seed array... [3.608s] Computing hash join... [5.066s] Masking low complexity seeds... [0.204s] Searching alignments... [609.45s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.943s] Building query seed array... [2.965s] Computing hash join... [5.106s] Masking low complexity seeds... [0.202s] Searching alignments... [634.965s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.764s] Building query seed array... [2.789s] Computing hash join... [4.932s] Masking low complexity seeds... [0.189s] Searching alignments... [931.319s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.08s] Building query seed array... [3.121s] Computing hash join... [4.84s] Masking low complexity seeds... [0.179s] Searching alignments... [715.298s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.696s] Building query seed array... [3.393s] Computing hash join... [4.931s] Masking low complexity seeds... [0.189s] Searching alignments... [502.173s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.077s] Building query seed array... [2.839s] Computing hash join... [4.931s] Masking low complexity seeds... [0.189s] Searching alignments... [527.06s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.022s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [36.595s] Sorting trace points... [7.366s] Computing alignments... [241.541s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (114705350240) exceeds memory limit. [0.07s] Sorting trace points... [5.6s] Computing alignments... [241.946s] Deallocating buffers... [0.156s] Loading trace points... Warning: resident size (115563934460) exceeds memory limit. [0.059s] Sorting trace points... [5.457s] Computing alignments... [239.064s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (117189690605) exceeds memory limit. [0.914s] Sorting trace points... [7.291s] Computing alignments... [250.196s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (116888079800) exceeds memory limit. [0.837s] Sorting trace points... [5.514s] Computing alignments... [241.35s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (115172450945) exceeds memory limit. [0.063s] Sorting trace points... [5.829s] Computing alignments... [238.983s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115304825405) exceeds memory limit. [0.081s] Sorting trace points... [6.884s] Computing alignments... [242.589s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (116527244330) exceeds memory limit. [0.085s] Sorting trace points... [5.55s] Computing alignments... [246.081s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (116165746415) exceeds memory limit. [0.078s] Sorting trace points... [5.299s] Computing alignments... [238.29s] Deallocating buffers... [0.161s] Loading trace points... Warning: resident size (115293804260) exceeds memory limit. [0.055s] Sorting trace points... [5.618s] Computing alignments... [241.741s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (115961396735) exceeds memory limit. [0.001s] Sorting trace points... [5.557s] Computing alignments... [245.131s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (117596219120) exceeds memory limit. [0.062s] Sorting trace points... [6.619s] Computing alignments... [249.617s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (117177899300) exceeds memory limit. [0.059s] Sorting trace points... [7.38s] Computing alignments... [243.532s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (115533763115) exceeds memory limit. [0.063s] Sorting trace points... [6.005s] Computing alignments... [244.407s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (115220476970) exceeds memory limit. [0.057s] Sorting trace points... [5.67s] Computing alignments... [244.28s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (115077090245) exceeds memory limit. [0s] Sorting trace points... [5.352s] Computing alignments... [234.645s] Deallocating buffers... [0.131s] Loading trace points... [0s] [4021.81s] Deallocating reference... [0.068s] Loading reference sequences... [29.439s] Masking reference... [30.907s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.723s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.44s] Building query seed array... [3.147s] Computing hash join... [5.184s] Masking low complexity seeds... [0.204s] Searching alignments... [1952.59s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.325s] Building query seed array... [3.427s] Computing hash join... [5.154s] Masking low complexity seeds... [0.206s] Searching alignments... [858.001s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.473s] Building query seed array... [3.601s] Computing hash join... [5.181s] Masking low complexity seeds... [0.2s] Searching alignments... [617.609s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.183s] Building query seed array... [2.997s] Computing hash join... [5.023s] Masking low complexity seeds... [0.199s] Searching alignments... [629.313s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.11s] Building query seed array... [2.773s] Computing hash join... [5.035s] Masking low complexity seeds... [0.188s] Searching alignments... [929.746s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.108s] Building query seed array... [3.172s] Computing hash join... [4.988s] Masking low complexity seeds... [0.193s] Searching alignments... [688.122s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.156s] Building query seed array... [3.448s] Computing hash join... [4.91s] Masking low complexity seeds... [0.186s] Searching alignments... [500.992s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.319s] Building query seed array... [2.756s] Computing hash join... [4.927s] Masking low complexity seeds... [0.185s] Searching alignments... [526.491s] Deallocating memory... [0s] Deallocating buffers... [0.146s] Clearing query masking... [2.022s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [36.971s] Sorting trace points... [7.123s] Computing alignments... [227.319s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (114109319526) exceeds memory limit. [0.06s] Sorting trace points... [5.27s] Computing alignments... [226.659s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (114954962331) exceeds memory limit. [0.067s] Sorting trace points... [5.636s] Computing alignments... [225.846s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (116564010531) exceeds memory limit. [0.075s] Sorting trace points... [5.68s] Computing alignments... [234.626s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (116269571091) exceeds memory limit. [0.102s] Sorting trace points... [7.673s] Computing alignments... [228.322s] Deallocating buffers... [0.114s] Loading trace points... Warning: resident size (114569939436) exceeds memory limit. [0.041s] Sorting trace points... [7.333s] Computing alignments... [224.855s] Deallocating buffers... [0.112s] Loading trace points... Warning: resident size (114697252521) exceeds memory limit. [0.051s] Sorting trace points... [7.218s] Computing alignments... [227.906s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (115908849741) exceeds memory limit. [0.06s] Sorting trace points... [7.234s] Computing alignments... [230.706s] Deallocating buffers... [0.156s] Loading trace points... Warning: resident size (115554292941) exceeds memory limit. [0.064s] Sorting trace points... [5.628s] Computing alignments... [224.615s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114690777636) exceeds memory limit. [0.049s] Sorting trace points... [6.372s] Computing alignments... [228.056s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (115348739466) exceeds memory limit. [0.082s] Sorting trace points... [7.606s] Computing alignments... [231.083s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (116970573171) exceeds memory limit. [0.069s] Sorting trace points... [5.637s] Computing alignments... [234.915s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (116558673201) exceeds memory limit. [0.069s] Sorting trace points... [5.808s] Computing alignments... [229.286s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114927464931) exceeds memory limit. [0.05s] Sorting trace points... [7.347s] Computing alignments... [229.607s] Deallocating buffers... [0.117s] Loading trace points... Warning: resident size (114618177486) exceeds memory limit. [0.053s] Sorting trace points... [6.816s] Computing alignments... [228.986s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (114471680736) exceeds memory limit. [0s] Sorting trace points... [5.696s] Computing alignments... [220.405s] Deallocating buffers... [0.132s] Loading trace points... [0s] [3797.32s] Deallocating reference... [0.064s] Loading reference sequences... [26.345s] Masking reference... [25.501s] Initializing dictionary... [0.064s] Initializing temporary storage... [0.009s] Building reference histograms... [26.546s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.494s] Building query seed array... [3.089s] Computing hash join... [4.39s] Masking low complexity seeds... [0.195s] Searching alignments... [1552.24s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.089s] Building query seed array... [3.492s] Computing hash join... [4.416s] Masking low complexity seeds... [0.195s] Searching alignments... [682.763s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.789s] Building query seed array... [3.655s] Computing hash join... [4.324s] Masking low complexity seeds... [0.19s] Searching alignments... [501.2s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.239s] Building query seed array... [2.998s] Computing hash join... [4.231s] Masking low complexity seeds... [0.188s] Searching alignments... [515.46s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.287s] Building query seed array... [2.737s] Computing hash join... [4.146s] Masking low complexity seeds... [0.187s] Searching alignments... [729.575s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.1s] Building query seed array... [3.19s] Computing hash join... [4.069s] Masking low complexity seeds... [0.18s] Searching alignments... [572.249s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.909s] Building query seed array... [3.313s] Computing hash join... [4.146s] Masking low complexity seeds... [0.185s] Searching alignments... [402.922s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.176s] Building query seed array... [2.761s] Computing hash join... [4.18s] Masking low complexity seeds... [0.18s] Searching alignments... [415.51s] Deallocating memory... [0s] Deallocating buffers... [0.124s] Clearing query masking... [2.053s] Opening temporary output file... [0.047s] Computing alignments... Loading trace points... [29.492s] Sorting trace points... [6.121s] Computing alignments... [175.652s] Deallocating buffers... [0.095s] Loading trace points... [0.041s] Sorting trace points... [5.467s] Computing alignments... [176.072s] Deallocating buffers... [0.101s] Loading trace points... [0.045s] Sorting trace points... [5.301s] Computing alignments... [175.118s] Deallocating buffers... [0.114s] Loading trace points... [0.101s] Sorting trace points... [5.957s] Computing alignments... [181.734s] Deallocating buffers... [0.101s] Loading trace points... [0.059s] Sorting trace points... [6.08s] Computing alignments... [176.172s] Deallocating buffers... [0.115s] Loading trace points... [0.049s] Sorting trace points... [4.954s] Computing alignments... [174.626s] Deallocating buffers... [0.098s] Loading trace points... [0.05s] Sorting trace points... [4.766s] Computing alignments... [176.927s] Deallocating buffers... [0.101s] Loading trace points... [0.044s] Sorting trace points... [6.544s] Computing alignments... [179.87s] Deallocating buffers... [0.099s] Loading trace points... [0.439s] Sorting trace points... [6.014s] Computing alignments... [173.057s] Deallocating buffers... [0.099s] Loading trace points... [0.698s] Sorting trace points... [4.428s] Computing alignments... [177.321s] Deallocating buffers... [0.105s] Loading trace points... [0.374s] Sorting trace points... [5.173s] Computing alignments... [177.927s] Deallocating buffers... [0.102s] Loading trace points... [0.076s] Sorting trace points... [4.618s] Computing alignments... [182.873s] Deallocating buffers... [0.117s] Loading trace points... [0.087s] Sorting trace points... [4.473s] Computing alignments... [177.931s] Deallocating buffers... [0.134s] Loading trace points... [0.078s] Sorting trace points... [5.268s] Computing alignments... [177.454s] Deallocating buffers... [0.109s] Loading trace points... [0.065s] Sorting trace points... [5.855s] Computing alignments... [176.818s] Deallocating buffers... [0.099s] Loading trace points... [0s] Sorting trace points... [4.399s] Computing alignments... [170.974s] Deallocating buffers... [0.109s] Loading trace points... [0s] [2949.44s] Deallocating reference... [0.056s] Loading reference sequences... [0.076s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [11960s] [11960s] Deallocating queries... [0.081s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.879s] [3.651s] Closing the database... [0s] Cleaning up... [0s] Total time = 161828s Reported 15799866706 pairwise alignments, 15799866706 HSPs. 9461735 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R2.fastq.gz complete: CH07-08.trimmed.R2.blastx.meganized.daa Now MEGANizing CH07-08.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-08.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (175.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (22,422.6s) Total reads: 9,461,735 With hits: 9,461,735 Alignments: 10,568,070,652 Assig. Taxonomy: 5,830,846 Assig. SEED: 125,058 Assig. EGGNOG: 24,030 Assig. GTDB: 268,802 Assig. EC: 1,132,067 Assig. INTERPRO2GO: 2,910,271 MinSupport set to: 4730 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 5,698 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (36.4s) Min-supp. changes: 3,425 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.8s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 155 Class. SEED: 493 Class. EGGNOG: 1,579 Class. GTDB: 47 Class. EC: 2,308 Class. INTERPRO2GO: 8,751 Total time: 22,654s Peak memory: 39.9 of 195.3G MEGANization of CH07-08.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-11.trimmed.R1.fastq.gz... deac6506c978661c14fe26a5e5d3ac53 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-11.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-11.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.36s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.784s] Opening the output file... [0s] Loading query sequences... [139.647s] Masking queries... [37.927s] Algorithm: Double-indexed Building query histograms... [32.689s] Loading reference sequences... [31.812s] Masking reference... [32.105s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.208s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.319s] Building query seed array... [3.4s] Computing hash join... [5.41s] Masking low complexity seeds... [0.23s] Searching alignments... [662.112s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.625s] Building query seed array... [3.735s] Computing hash join... [5.311s] Masking low complexity seeds... [0.243s] Searching alignments... [285.775s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.365s] Building query seed array... [3.905s] Computing hash join... [5.323s] Masking low complexity seeds... [0.248s] Searching alignments... [218.954s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.238s] Building query seed array... [3.205s] Computing hash join... [5.211s] Masking low complexity seeds... [0.245s] Searching alignments... [214.581s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.282s] Building query seed array... [2.889s] Computing hash join... [5.008s] Masking low complexity seeds... [0.228s] Searching alignments... [312.546s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.21s] Building query seed array... [3.37s] Computing hash join... [4.994s] Masking low complexity seeds... [0.224s] Searching alignments... [244.222s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.341s] Building query seed array... [3.553s] Computing hash join... [5.041s] Masking low complexity seeds... [0.221s] Searching alignments... [178.549s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.857s] Building query seed array... [2.94s] Computing hash join... [5.07s] Masking low complexity seeds... [0.218s] Searching alignments... [187.476s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [2.223s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.162s] Sorting trace points... [2.439s] Computing alignments... [79.658s] Deallocating buffers... [0.046s] Loading trace points... [0.074s] Sorting trace points... [2.279s] Computing alignments... [79.437s] Deallocating buffers... [0.052s] Loading trace points... [0s] Sorting trace points... [2.286s] Computing alignments... [80.266s] Deallocating buffers... [0.052s] Loading trace points... [0.973s] Sorting trace points... [2.906s] Computing alignments... [83.649s] Deallocating buffers... [0.049s] Loading trace points... [0.001s] Sorting trace points... [2.549s] Computing alignments... [79.145s] Deallocating buffers... [0.054s] Loading trace points... [0.07s] Sorting trace points... [1.893s] Computing alignments... [80.156s] Deallocating buffers... [0.048s] Loading trace points... [0.087s] Sorting trace points... [2.533s] Computing alignments... [80.422s] Deallocating buffers... [0.049s] Loading trace points... [0.077s] Sorting trace points... [2.774s] Computing alignments... [83.392s] Deallocating buffers... [0.056s] Loading trace points... [0.001s] Sorting trace points... [2.337s] Computing alignments... [80.381s] Deallocating buffers... [0.047s] Loading trace points... [0.05s] Sorting trace points... [1.971s] Computing alignments... [81.958s] Deallocating buffers... [0.051s] Loading trace points... [0.049s] Sorting trace points... [2.285s] Computing alignments... [82.014s] Deallocating buffers... [0.057s] Loading trace points... [0.082s] Sorting trace points... [2.503s] Computing alignments... [86.134s] Deallocating buffers... [0.058s] Loading trace points... [0.055s] Sorting trace points... [2.63s] Computing alignments... [79.248s] Deallocating buffers... [0.04s] Loading trace points... [0.049s] Sorting trace points... [2.708s] Computing alignments... [80.744s] Deallocating buffers... [0.046s] Loading trace points... [0.055s] Sorting trace points... [2.703s] Computing alignments... [79.153s] Deallocating buffers... [0.046s] Loading trace points... [0s] Sorting trace points... [2.644s] Computing alignments... [82.645s] Deallocating buffers... [0.05s] Loading trace points... [0s] [1354.47s] Deallocating reference... [0.068s] Loading reference sequences... [31.726s] Masking reference... [32.226s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.617s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.495s] Building query seed array... [3.254s] Computing hash join... [5.322s] Masking low complexity seeds... [0.238s] Searching alignments... [659.925s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.287s] Building query seed array... [3.604s] Computing hash join... [5.202s] Masking low complexity seeds... [0.244s] Searching alignments... [286.624s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.62s] Building query seed array... [3.839s] Computing hash join... [5.15s] Masking low complexity seeds... [0.233s] Searching alignments... [214.081s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.112s] Building query seed array... [3.126s] Computing hash join... [5.162s] Masking low complexity seeds... [0.243s] Searching alignments... [212.141s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.905s] Building query seed array... [2.897s] Computing hash join... [5.042s] Masking low complexity seeds... [0.226s] Searching alignments... [306.664s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.253s] Building query seed array... [3.448s] Computing hash join... [5.043s] Masking low complexity seeds... [0.225s] Searching alignments... [246.388s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.01s] Building query seed array... [3.458s] Computing hash join... [4.972s] Masking low complexity seeds... [0.224s] Searching alignments... [177.607s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.336s] Building query seed array... [2.984s] Computing hash join... [4.994s] Masking low complexity seeds... [0.229s] Searching alignments... [180.239s] Deallocating memory... [0s] Deallocating buffers... [0.147s] Clearing query masking... [2.208s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.398s] Sorting trace points... [2.721s] Computing alignments... [83.594s] Deallocating buffers... [0.069s] Loading trace points... [0.094s] Sorting trace points... [2.053s] Computing alignments... [82.353s] Deallocating buffers... [0.059s] Loading trace points... [0.074s] Sorting trace points... [1.93s] Computing alignments... [83.349s] Deallocating buffers... [0.063s] Loading trace points... [0.09s] Sorting trace points... [2.288s] Computing alignments... [87.142s] Deallocating buffers... [0.066s] Loading trace points... [0.073s] Sorting trace points... [1.928s] Computing alignments... [82.171s] Deallocating buffers... [0.062s] Loading trace points... [0.09s] Sorting trace points... [2.148s] Computing alignments... [83.585s] Deallocating buffers... [0.053s] Loading trace points... [0.04s] Sorting trace points... [2.484s] Computing alignments... [84.122s] Deallocating buffers... [0.071s] Loading trace points... [0.001s] Sorting trace points... [2.468s] Computing alignments... [87.103s] Deallocating buffers... [0.056s] Loading trace points... [0.056s] Sorting trace points... [2.331s] Computing alignments... [83.726s] Deallocating buffers... [0.069s] Loading trace points... [0.178s] Sorting trace points... [1.945s] Computing alignments... [86.018s] Deallocating buffers... [0.065s] Loading trace points... [0.065s] Sorting trace points... [2.371s] Computing alignments... [85.286s] Deallocating buffers... [0.067s] Loading trace points... [0.044s] Sorting trace points... [2.783s] Computing alignments... [90.683s] Deallocating buffers... [0.059s] Loading trace points... [0.077s] Sorting trace points... [2.546s] Computing alignments... [83.195s] Deallocating buffers... [0.051s] Loading trace points... [0.075s] Sorting trace points... [2.503s] Computing alignments... [84.13s] Deallocating buffers... [0.06s] Loading trace points... [0.079s] Sorting trace points... [1.945s] Computing alignments... [82.998s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [2.616s] Computing alignments... [86.599s] Deallocating buffers... [0.057s] Loading trace points... [0s] [1408.61s] Deallocating reference... [0.071s] Loading reference sequences... [31.16s] Masking reference... [30.855s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.01s] Building reference histograms... [32.567s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.552s] Building query seed array... [3.266s] Computing hash join... [5.294s] Masking low complexity seeds... [0.242s] Searching alignments... [663.925s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.717s] Building query seed array... [3.561s] Computing hash join... [5.243s] Masking low complexity seeds... [0.227s] Searching alignments... [285.772s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.789s] Building query seed array... [3.74s] Computing hash join... [5.194s] Masking low complexity seeds... [0.236s] Searching alignments... [217.427s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.618s] Building query seed array... [3.146s] Computing hash join... [5.157s] Masking low complexity seeds... [0.241s] Searching alignments... [218.976s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.944s] Building query seed array... [2.933s] Computing hash join... [4.947s] Masking low complexity seeds... [0.228s] Searching alignments... [301.481s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.312s] Building query seed array... [3.338s] Computing hash join... [4.962s] Masking low complexity seeds... [0.229s] Searching alignments... [246.111s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.934s] Building query seed array... [3.547s] Computing hash join... [5.054s] Masking low complexity seeds... [0.229s] Searching alignments... [178.294s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.074s] Building query seed array... [2.998s] Computing hash join... [5.047s] Masking low complexity seeds... [0.238s] Searching alignments... [188.336s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [2.245s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.834s] Sorting trace points... [2.539s] Computing alignments... [84.541s] Deallocating buffers... [0.062s] Loading trace points... [0.056s] Sorting trace points... [2.512s] Computing alignments... [83.179s] Deallocating buffers... [0.059s] Loading trace points... [0.076s] Sorting trace points... [1.905s] Computing alignments... [83.71s] Deallocating buffers... [0.056s] Loading trace points... [0.083s] Sorting trace points... [2.743s] Computing alignments... [87.594s] Deallocating buffers... [0.048s] Loading trace points... [0.066s] Sorting trace points... [2.037s] Computing alignments... [82.186s] Deallocating buffers... [0.055s] Loading trace points... [0.066s] Sorting trace points... [1.884s] Computing alignments... [82.63s] Deallocating buffers... [0.058s] Loading trace points... [0.086s] Sorting trace points... [2.139s] Computing alignments... [84.464s] Deallocating buffers... [0.064s] Loading trace points... [0.074s] Sorting trace points... [2.097s] Computing alignments... [86.655s] Deallocating buffers... [0.059s] Loading trace points... [0.067s] Sorting trace points... [1.982s] Computing alignments... [84.404s] Deallocating buffers... [0.059s] Loading trace points... [0.452s] Sorting trace points... [2.313s] Computing alignments... [84.873s] Deallocating buffers... [0.065s] Loading trace points... [0.073s] Sorting trace points... [2.665s] Computing alignments... [86.435s] Deallocating buffers... [0.062s] Loading trace points... [0.054s] Sorting trace points... [2.09s] Computing alignments... [90.951s] Deallocating buffers... [0.065s] Loading trace points... [0.001s] Sorting trace points... [1.888s] Computing alignments... [83.065s] Deallocating buffers... [0.06s] Loading trace points... [0.06s] Sorting trace points... [2.578s] Computing alignments... [84.152s] Deallocating buffers... [0.044s] Loading trace points... [0.053s] Sorting trace points... [2.636s] Computing alignments... [82.87s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [1.903s] Computing alignments... [86.936s] Deallocating buffers... [0.06s] Loading trace points... [0s] [1411.69s] Deallocating reference... [0.075s] Loading reference sequences... [29.737s] Masking reference... [30.849s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.43s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.791s] Building query seed array... [3.299s] Computing hash join... [5.359s] Masking low complexity seeds... [0.249s] Searching alignments... [663.382s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.702s] Building query seed array... [3.696s] Computing hash join... [5.252s] Masking low complexity seeds... [0.237s] Searching alignments... [285.063s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.646s] Building query seed array... [3.834s] Computing hash join... [5.196s] Masking low complexity seeds... [0.24s] Searching alignments... [219.106s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.039s] Building query seed array... [3.116s] Computing hash join... [5.23s] Masking low complexity seeds... [0.239s] Searching alignments... [214.57s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.977s] Building query seed array... [2.934s] Computing hash join... [5.014s] Masking low complexity seeds... [0.222s] Searching alignments... [314.198s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.687s] Building query seed array... [3.383s] Computing hash join... [5.061s] Masking low complexity seeds... [0.226s] Searching alignments... [251.579s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.307s] Building query seed array... [3.462s] Computing hash join... [5.012s] Masking low complexity seeds... [0.231s] Searching alignments... [178.843s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.398s] Building query seed array... [2.942s] Computing hash join... [4.996s] Masking low complexity seeds... [0.22s] Searching alignments... [183.88s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [2.313s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.732s] Sorting trace points... [2.576s] Computing alignments... [82.283s] Deallocating buffers... [0.05s] Loading trace points... [0.05s] Sorting trace points... [2.486s] Computing alignments... [81.087s] Deallocating buffers... [0.053s] Loading trace points... [0.069s] Sorting trace points... [2.34s] Computing alignments... [81.946s] Deallocating buffers... [0.048s] Loading trace points... [0.076s] Sorting trace points... [2.039s] Computing alignments... [84.969s] Deallocating buffers... [0.053s] Loading trace points... [0.198s] Sorting trace points... [2.54s] Computing alignments... [81.163s] Deallocating buffers... [0.041s] Loading trace points... [0.049s] Sorting trace points... [2.497s] Computing alignments... [81.843s] Deallocating buffers... [0.054s] Loading trace points... [0.068s] Sorting trace points... [2.586s] Computing alignments... [82.424s] Deallocating buffers... [0.046s] Loading trace points... [0.074s] Sorting trace points... [2.003s] Computing alignments... [85.205s] Deallocating buffers... [0.051s] Loading trace points... [0.069s] Sorting trace points... [2.652s] Computing alignments... [81.995s] Deallocating buffers... [0.056s] Loading trace points... [0.056s] Sorting trace points... [2.108s] Computing alignments... [84.157s] Deallocating buffers... [0.052s] Loading trace points... [0.064s] Sorting trace points... [2.667s] Computing alignments... [83.683s] Deallocating buffers... [0.047s] Loading trace points... [0.758s] Sorting trace points... [2.082s] Computing alignments... [88.716s] Deallocating buffers... [0.056s] Loading trace points... [0.096s] Sorting trace points... [2.421s] Computing alignments... [81.951s] Deallocating buffers... [0.047s] Loading trace points... [0.044s] Sorting trace points... [2.229s] Computing alignments... [82.808s] Deallocating buffers... [0.053s] Loading trace points... [0.06s] Sorting trace points... [1.898s] Computing alignments... [81.242s] Deallocating buffers... [0.052s] Loading trace points... [0s] Sorting trace points... [2.47s] Computing alignments... [85.079s] Deallocating buffers... [0.046s] Loading trace points... [0s] [1384.53s] Deallocating reference... [0.071s] Loading reference sequences... [30.633s] Masking reference... [30.921s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [31.899s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.043s] Building query seed array... [3.269s] Computing hash join... [5.287s] Masking low complexity seeds... [0.241s] Searching alignments... [655.939s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.021s] Building query seed array... [3.705s] Computing hash join... [5.246s] Masking low complexity seeds... [0.235s] Searching alignments... [282.801s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.287s] Building query seed array... [3.764s] Computing hash join... [5.167s] Masking low complexity seeds... [0.241s] Searching alignments... [217.861s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.37s] Building query seed array... [3.237s] Computing hash join... [5.19s] Masking low complexity seeds... [0.235s] Searching alignments... [213.16s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.276s] Building query seed array... [2.842s] Computing hash join... [5.053s] Masking low complexity seeds... [0.231s] Searching alignments... [312.874s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.334s] Building query seed array... [3.216s] Computing hash join... [5.082s] Masking low complexity seeds... [0.226s] Searching alignments... [243.285s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.013s] Building query seed array... [3.494s] Computing hash join... [5.077s] Masking low complexity seeds... [0.228s] Searching alignments... [177.571s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.978s] Building query seed array... [2.956s] Computing hash join... [5.092s] Masking low complexity seeds... [0.224s] Searching alignments... [186.513s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [2.206s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.513s] Sorting trace points... [2.645s] Computing alignments... [87.987s] Deallocating buffers... [0.059s] Loading trace points... [0.07s] Sorting trace points... [2.206s] Computing alignments... [86.27s] Deallocating buffers... [0.056s] Loading trace points... [0.068s] Sorting trace points... [2.201s] Computing alignments... [86.788s] Deallocating buffers... [0.063s] Loading trace points... [0.079s] Sorting trace points... [2.055s] Computing alignments... [90.752s] Deallocating buffers... [0.062s] Loading trace points... [0.081s] Sorting trace points... [2.634s] Computing alignments... [84.892s] Deallocating buffers... [0.059s] Loading trace points... [0.071s] Sorting trace points... [1.843s] Computing alignments... [86.873s] Deallocating buffers... [0.058s] Loading trace points... [0.054s] Sorting trace points... [2.404s] Computing alignments... [87.486s] Deallocating buffers... [0.055s] Loading trace points... [0.046s] Sorting trace points... [2.006s] Computing alignments... [90.541s] Deallocating buffers... [0.058s] Loading trace points... [0.061s] Sorting trace points... [2.167s] Computing alignments... [87.216s] Deallocating buffers... [0.059s] Loading trace points... [0.048s] Sorting trace points... [2.479s] Computing alignments... [88.252s] Deallocating buffers... [0.059s] Loading trace points... [0.078s] Sorting trace points... [2.222s] Computing alignments... [89.266s] Deallocating buffers... [0.058s] Loading trace points... [0.045s] Sorting trace points... [2.058s] Computing alignments... [94.424s] Deallocating buffers... [0.066s] Loading trace points... [0.091s] Sorting trace points... [2.156s] Computing alignments... [86.816s] Deallocating buffers... [0.053s] Loading trace points... [0.093s] Sorting trace points... [2.278s] Computing alignments... [87.338s] Deallocating buffers... [0.053s] Loading trace points... [0.438s] Sorting trace points... [2.564s] Computing alignments... [85.805s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [2.016s] Computing alignments... [89.972s] Deallocating buffers... [0.063s] Loading trace points... [0s] [1462.48s] Deallocating reference... [0.077s] Loading reference sequences... [246.127s] Masking reference... [30.884s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.972s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.21s] Building query seed array... [3.254s] Computing hash join... [5.284s] Masking low complexity seeds... [0.243s] Searching alignments... [652.643s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.247s] Building query seed array... [3.721s] Computing hash join... [5.25s] Masking low complexity seeds... [0.242s] Searching alignments... [284.133s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.984s] Building query seed array... [3.803s] Computing hash join... [5.231s] Masking low complexity seeds... [0.247s] Searching alignments... [212.985s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.643s] Building query seed array... [3.107s] Computing hash join... [5.13s] Masking low complexity seeds... [0.236s] Searching alignments... [211.507s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.959s] Building query seed array... [2.945s] Computing hash join... [5.05s] Masking low complexity seeds... [0.233s] Searching alignments... [311.392s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.202s] Building query seed array... [3.347s] Computing hash join... [4.914s] Masking low complexity seeds... [0.218s] Searching alignments... [253.017s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.514s] Building query seed array... [3.551s] Computing hash join... [4.955s] Masking low complexity seeds... [0.223s] Searching alignments... [177.145s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.182s] Building query seed array... [2.955s] Computing hash join... [5.008s] Masking low complexity seeds... [0.223s] Searching alignments... [179.785s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [2.309s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.523s] Sorting trace points... [2.579s] Computing alignments... [84.857s] Deallocating buffers... [0.047s] Loading trace points... [0.061s] Sorting trace points... [1.959s] Computing alignments... [84.028s] Deallocating buffers... [0.05s] Loading trace points... [0.05s] Sorting trace points... [2.621s] Computing alignments... [84.697s] Deallocating buffers... [0.047s] Loading trace points... [0.084s] Sorting trace points... [2.696s] Computing alignments... [88.02s] Deallocating buffers... [0.049s] Loading trace points... [0.06s] Sorting trace points... [2.519s] Computing alignments... [82.376s] Deallocating buffers... [0.048s] Loading trace points... [0.092s] Sorting trace points... [1.864s] Computing alignments... [83.22s] Deallocating buffers... [0.049s] Loading trace points... [0.046s] Sorting trace points... [2.442s] Computing alignments... [84.833s] Deallocating buffers... [0.046s] Loading trace points... [0.093s] Sorting trace points... [2.528s] Computing alignments... [87.051s] Deallocating buffers... [0.048s] Loading trace points... [0.051s] Sorting trace points... [2.032s] Computing alignments... [85.03s] Deallocating buffers... [0.051s] Loading trace points... [0.072s] Sorting trace points... [2.516s] Computing alignments... [84.702s] Deallocating buffers... [0.055s] Loading trace points... [0.069s] Sorting trace points... [2.653s] Computing alignments... [87.22s] Deallocating buffers... [0.056s] Loading trace points... [0.11s] Sorting trace points... [1.991s] Computing alignments... [90.405s] Deallocating buffers... [0.055s] Loading trace points... [0.092s] Sorting trace points... [2.522s] Computing alignments... [83.389s] Deallocating buffers... [0.053s] Loading trace points... [0.068s] Sorting trace points... [2.277s] Computing alignments... [84.506s] Deallocating buffers... [0.053s] Loading trace points... [0.077s] Sorting trace points... [2.659s] Computing alignments... [83.522s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [2.194s] Computing alignments... [87.735s] Deallocating buffers... [0.055s] Loading trace points... [0s] [1419.1s] Deallocating reference... [0.076s] Loading reference sequences... [29.997s] Masking reference... [30.892s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.63s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.483s] Building query seed array... [3.228s] Computing hash join... [5.25s] Masking low complexity seeds... [0.245s] Searching alignments... [655.61s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.57s] Building query seed array... [3.754s] Computing hash join... [5.134s] Masking low complexity seeds... [0.235s] Searching alignments... [290.219s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.687s] Building query seed array... [3.905s] Computing hash join... [5.293s] Masking low complexity seeds... [0.235s] Searching alignments... [213.321s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.334s] Building query seed array... [3.156s] Computing hash join... [5.209s] Masking low complexity seeds... [0.235s] Searching alignments... [212.352s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.045s] Building query seed array... [2.885s] Computing hash join... [5.046s] Masking low complexity seeds... [0.223s] Searching alignments... [318.784s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.678s] Building query seed array... [3.234s] Computing hash join... [5.038s] Masking low complexity seeds... [0.224s] Searching alignments... [242.59s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.174s] Building query seed array... [3.5s] Computing hash join... [4.999s] Masking low complexity seeds... [0.228s] Searching alignments... [175.744s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.157s] Building query seed array... [2.972s] Computing hash join... [5.063s] Masking low complexity seeds... [0.223s] Searching alignments... [186.248s] Deallocating memory... [0s] Deallocating buffers... [0.147s] Clearing query masking... [2.292s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.419s] Sorting trace points... [2.582s] Computing alignments... [85.595s] Deallocating buffers... [0.046s] Loading trace points... [0.159s] Sorting trace points... [2.54s] Computing alignments... [84.55s] Deallocating buffers... [0.047s] Loading trace points... [0.086s] Sorting trace points... [2.326s] Computing alignments... [84.968s] Deallocating buffers... [0.05s] Loading trace points... [0.079s] Sorting trace points... [2.751s] Computing alignments... [88.421s] Deallocating buffers... [0.056s] Loading trace points... [0.078s] Sorting trace points... [2.062s] Computing alignments... [82.674s] Deallocating buffers... [0.052s] Loading trace points... [0.069s] Sorting trace points... [2.505s] Computing alignments... [83.925s] Deallocating buffers... [0.045s] Loading trace points... [0.001s] Sorting trace points... [2.627s] Computing alignments... [84.748s] Deallocating buffers... [0.053s] Loading trace points... [0.089s] Sorting trace points... [2.625s] Computing alignments... [88.173s] Deallocating buffers... [0.056s] Loading trace points... [0.058s] Sorting trace points... [2.578s] Computing alignments... [85.319s] Deallocating buffers... [0.045s] Loading trace points... [0.077s] Sorting trace points... [2.579s] Computing alignments... [85.564s] Deallocating buffers... [0.055s] Loading trace points... [0.066s] Sorting trace points... [2.565s] Computing alignments... [87.057s] Deallocating buffers... [0.055s] Loading trace points... [0.076s] Sorting trace points... [2.155s] Computing alignments... [91.891s] Deallocating buffers... [0.052s] Loading trace points... [0.046s] Sorting trace points... [2.319s] Computing alignments... [83.713s] Deallocating buffers... [0.053s] Loading trace points... [0.075s] Sorting trace points... [2.635s] Computing alignments... [85.687s] Deallocating buffers... [0.047s] Loading trace points... [0.083s] Sorting trace points... [2.334s] Computing alignments... [83.433s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [2.537s] Computing alignments... [88.329s] Deallocating buffers... [0.061s] Loading trace points... [0s] [1429.17s] Deallocating reference... [0.077s] Loading reference sequences... [29.818s] Masking reference... [30.896s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.374s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.489s] Building query seed array... [3.292s] Computing hash join... [5.341s] Masking low complexity seeds... [0.245s] Searching alignments... [656.642s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.309s] Building query seed array... [3.742s] Computing hash join... [5.264s] Masking low complexity seeds... [0.239s] Searching alignments... [282.594s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.317s] Building query seed array... [3.86s] Computing hash join... [5.234s] Masking low complexity seeds... [0.244s] Searching alignments... [214.251s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.163s] Building query seed array... [3.192s] Computing hash join... [5.243s] Masking low complexity seeds... [0.241s] Searching alignments... [214.705s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.28s] Building query seed array... [2.97s] Computing hash join... [5.023s] Masking low complexity seeds... [0.224s] Searching alignments... [310.97s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.563s] Building query seed array... [3.338s] Computing hash join... [4.998s] Masking low complexity seeds... [0.218s] Searching alignments... [248.172s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.32s] Building query seed array... [3.445s] Computing hash join... [5.084s] Masking low complexity seeds... [0.23s] Searching alignments... [178.644s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.992s] Building query seed array... [2.947s] Computing hash join... [5.131s] Masking low complexity seeds... [0.23s] Searching alignments... [185.357s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [2.306s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.372s] Sorting trace points... [2.588s] Computing alignments... [81.055s] Deallocating buffers... [0.049s] Loading trace points... [0.078s] Sorting trace points... [1.995s] Computing alignments... [80.475s] Deallocating buffers... [0.05s] Loading trace points... [0.111s] Sorting trace points... [1.985s] Computing alignments... [80.878s] Deallocating buffers... [0.049s] Loading trace points... [0.127s] Sorting trace points... [2.862s] Computing alignments... [84.09s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [2.524s] Computing alignments... [79.743s] Deallocating buffers... [0.041s] Loading trace points... [0.064s] Sorting trace points... [2.289s] Computing alignments... [80.942s] Deallocating buffers... [0.051s] Loading trace points... [0.071s] Sorting trace points... [2.019s] Computing alignments... [81.252s] Deallocating buffers... [0.049s] Loading trace points... [0.08s] Sorting trace points... [2.757s] Computing alignments... [84.207s] Deallocating buffers... [0.047s] Loading trace points... [0.072s] Sorting trace points... [2.535s] Computing alignments... [81.299s] Deallocating buffers... [0.046s] Loading trace points... [0.048s] Sorting trace points... [1.958s] Computing alignments... [82.486s] Deallocating buffers... [0.053s] Loading trace points... [0.047s] Sorting trace points... [2.604s] Computing alignments... [82.98s] Deallocating buffers... [0.047s] Loading trace points... [0.083s] Sorting trace points... [2.733s] Computing alignments... [87.51s] Deallocating buffers... [0.05s] Loading trace points... [0.067s] Sorting trace points... [2.105s] Computing alignments... [80.959s] Deallocating buffers... [0.05s] Loading trace points... [0.051s] Sorting trace points... [2.628s] Computing alignments... [81.647s] Deallocating buffers... [0.046s] Loading trace points... [0.055s] Sorting trace points... [2.171s] Computing alignments... [80.138s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [2.163s] Computing alignments... [84.167s] Deallocating buffers... [0.054s] Loading trace points... [0s] [1367.01s] Deallocating reference... [0.07s] Loading reference sequences... [29.782s] Masking reference... [32.224s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [31.937s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.997s] Building query seed array... [3.25s] Computing hash join... [5.308s] Masking low complexity seeds... [0.246s] Searching alignments... [668.309s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.662s] Building query seed array... [3.698s] Computing hash join... [5.18s] Masking low complexity seeds... [0.241s] Searching alignments... [284.491s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.11s] Building query seed array... [3.872s] Computing hash join... [5.237s] Masking low complexity seeds... [0.237s] Searching alignments... [218.819s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.904s] Building query seed array... [3.16s] Computing hash join... [5.247s] Masking low complexity seeds... [0.247s] Searching alignments... [219.326s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.776s] Building query seed array... [2.9s] Computing hash join... [5.053s] Masking low complexity seeds... [0.229s] Searching alignments... [316.046s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.547s] Building query seed array... [3.338s] Computing hash join... [5.074s] Masking low complexity seeds... [0.22s] Searching alignments... [245.845s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.849s] Building query seed array... [3.485s] Computing hash join... [5.112s] Masking low complexity seeds... [0.222s] Searching alignments... [179.978s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.132s] Building query seed array... [2.907s] Computing hash join... [5.028s] Masking low complexity seeds... [0.224s] Searching alignments... [182.024s] Deallocating memory... [0s] Deallocating buffers... [0.13s] Clearing query masking... [2.206s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.599s] Sorting trace points... [2.611s] Computing alignments... [82.731s] Deallocating buffers... [0.06s] Loading trace points... [0.056s] Sorting trace points... [2.206s] Computing alignments... [82.009s] Deallocating buffers... [0.057s] Loading trace points... [0.064s] Sorting trace points... [2.576s] Computing alignments... [81.88s] Deallocating buffers... [0.062s] Loading trace points... [0.055s] Sorting trace points... [2.552s] Computing alignments... [86.034s] Deallocating buffers... [0.064s] Loading trace points... [0.082s] Sorting trace points... [2.056s] Computing alignments... [80.795s] Deallocating buffers... [0.057s] Loading trace points... [0.062s] Sorting trace points... [2.227s] Computing alignments... [81.478s] Deallocating buffers... [0.06s] Loading trace points... [0.001s] Sorting trace points... [2.705s] Computing alignments... [82.747s] Deallocating buffers... [0.065s] Loading trace points... [0.069s] Sorting trace points... [2.722s] Computing alignments... [85.552s] Deallocating buffers... [0.056s] Loading trace points... [0.04s] Sorting trace points... [2.492s] Computing alignments... [82.52s] Deallocating buffers... [0.044s] Loading trace points... [0.069s] Sorting trace points... [2.432s] Computing alignments... [84.126s] Deallocating buffers... [0.06s] Loading trace points... [0.099s] Sorting trace points... [2.677s] Computing alignments... [84.147s] Deallocating buffers... [0.06s] Loading trace points... [0.078s] Sorting trace points... [2.383s] Computing alignments... [89.235s] Deallocating buffers... [0.062s] Loading trace points... [0.067s] Sorting trace points... [2.458s] Computing alignments... [82.679s] Deallocating buffers... [0.049s] Loading trace points... [0.928s] Sorting trace points... [2.042s] Computing alignments... [83.001s] Deallocating buffers... [0.059s] Loading trace points... [0.091s] Sorting trace points... [2.625s] Computing alignments... [81.165s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [2.573s] Computing alignments... [85.351s] Deallocating buffers... [0.063s] Loading trace points... [0s] [1391.18s] Deallocating reference... [0.071s] Loading reference sequences... [31.933s] Masking reference... [31.173s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.438s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.298s] Building query seed array... [3.338s] Computing hash join... [5.283s] Masking low complexity seeds... [0.241s] Searching alignments... [662.685s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.116s] Building query seed array... [3.734s] Computing hash join... [5.162s] Masking low complexity seeds... [0.242s] Searching alignments... [286.281s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.152s] Building query seed array... [3.932s] Computing hash join... [5.343s] Masking low complexity seeds... [0.24s] Searching alignments... [215.105s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.126s] Building query seed array... [3.123s] Computing hash join... [5.246s] Masking low complexity seeds... [0.232s] Searching alignments... [213.731s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.862s] Building query seed array... [2.901s] Computing hash join... [5.07s] Masking low complexity seeds... [0.222s] Searching alignments... [306.337s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.791s] Building query seed array... [3.332s] Computing hash join... [5.022s] Masking low complexity seeds... [0.218s] Searching alignments... [246.377s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.288s] Building query seed array... [3.545s] Computing hash join... [5.097s] Masking low complexity seeds... [0.227s] Searching alignments... [178.867s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.756s] Building query seed array... [2.959s] Computing hash join... [4.997s] Masking low complexity seeds... [0.221s] Searching alignments... [188.36s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [2.239s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.365s] Sorting trace points... [2.538s] Computing alignments... [73.941s] Deallocating buffers... [0.032s] Loading trace points... [0.062s] Sorting trace points... [2.606s] Computing alignments... [74.274s] Deallocating buffers... [0.054s] Loading trace points... [0.06s] Sorting trace points... [2.437s] Computing alignments... [74.665s] Deallocating buffers... [0.046s] Loading trace points... [0.096s] Sorting trace points... [2.341s] Computing alignments... [77.45s] Deallocating buffers... [0.05s] Loading trace points... [0.057s] Sorting trace points... [2.51s] Computing alignments... [73.194s] Deallocating buffers... [0.045s] Loading trace points... [0.058s] Sorting trace points... [2.575s] Computing alignments... [74.302s] Deallocating buffers... [0.032s] Loading trace points... [0.091s] Sorting trace points... [2.58s] Computing alignments... [74.233s] Deallocating buffers... [0.054s] Loading trace points... [0.072s] Sorting trace points... [2.185s] Computing alignments... [77.677s] Deallocating buffers... [0.053s] Loading trace points... [0.069s] Sorting trace points... [2.597s] Computing alignments... [74.669s] Deallocating buffers... [0.062s] Loading trace points... [0.086s] Sorting trace points... [2.651s] Computing alignments... [75.395s] Deallocating buffers... [0.046s] Loading trace points... [0.068s] Sorting trace points... [2.185s] Computing alignments... [75.873s] Deallocating buffers... [0.052s] Loading trace points... [0.075s] Sorting trace points... [2.247s] Computing alignments... [79.984s] Deallocating buffers... [0.052s] Loading trace points... [0.056s] Sorting trace points... [2.549s] Computing alignments... [73.559s] Deallocating buffers... [0.045s] Loading trace points... [0.07s] Sorting trace points... [2.648s] Computing alignments... [75.164s] Deallocating buffers... [0.047s] Loading trace points... [0.066s] Sorting trace points... [2.588s] Computing alignments... [73.304s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [2.621s] Computing alignments... [77.142s] Deallocating buffers... [0.047s] Loading trace points... [0s] [1259.91s] Deallocating reference... [0.07s] Loading reference sequences... [30.798s] Masking reference... [30.879s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.595s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.361s] Building query seed array... [3.192s] Computing hash join... [5.336s] Masking low complexity seeds... [0.244s] Searching alignments... [656.17s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.216s] Building query seed array... [3.757s] Computing hash join... [5.251s] Masking low complexity seeds... [0.242s] Searching alignments... [284.043s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.205s] Building query seed array... [3.82s] Computing hash join... [5.209s] Masking low complexity seeds... [0.229s] Searching alignments... [217.7s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.045s] Building query seed array... [3.105s] Computing hash join... [5.078s] Masking low complexity seeds... [0.238s] Searching alignments... [217.221s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.045s] Building query seed array... [2.931s] Computing hash join... [4.959s] Masking low complexity seeds... [0.222s] Searching alignments... [309.947s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.22s] Building query seed array... [3.353s] Computing hash join... [5.04s] Masking low complexity seeds... [0.23s] Searching alignments... [240.827s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.123s] Building query seed array... [3.566s] Computing hash join... [5.085s] Masking low complexity seeds... [0.226s] Searching alignments... [176.307s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.094s] Building query seed array... [2.973s] Computing hash join... [5.022s] Masking low complexity seeds... [0.225s] Searching alignments... [183.796s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [2.223s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.541s] Sorting trace points... [2.751s] Computing alignments... [90.147s] Deallocating buffers... [0.057s] Loading trace points... [0.086s] Sorting trace points... [2.59s] Computing alignments... [88.37s] Deallocating buffers... [0.063s] Loading trace points... [0.066s] Sorting trace points... [2.11s] Computing alignments... [89.856s] Deallocating buffers... [0.062s] Loading trace points... [0.08s] Sorting trace points... [2.24s] Computing alignments... [93.692s] Deallocating buffers... [0.061s] Loading trace points... [0.091s] Sorting trace points... [1.853s] Computing alignments... [86.903s] Deallocating buffers... [0.057s] Loading trace points... [0.103s] Sorting trace points... [2.551s] Computing alignments... [88.498s] Deallocating buffers... [0.059s] Loading trace points... [0.052s] Sorting trace points... [2.614s] Computing alignments... [89.311s] Deallocating buffers... [0.063s] Loading trace points... [0.046s] Sorting trace points... [2.549s] Computing alignments... [92.968s] Deallocating buffers... [0.056s] Loading trace points... [0.061s] Sorting trace points... [1.87s] Computing alignments... [89.872s] Deallocating buffers... [0.056s] Loading trace points... [0.06s] Sorting trace points... [2.099s] Computing alignments... [90.171s] Deallocating buffers... [0.056s] Loading trace points... [0.097s] Sorting trace points... [1.941s] Computing alignments... [91.217s] Deallocating buffers... [0.06s] Loading trace points... [0.044s] Sorting trace points... [2.501s] Computing alignments... [96.871s] Deallocating buffers... [0.062s] Loading trace points... [0.075s] Sorting trace points... [1.928s] Computing alignments... [88.177s] Deallocating buffers... [0.054s] Loading trace points... [0.088s] Sorting trace points... [2.565s] Computing alignments... [89.641s] Deallocating buffers... [0.061s] Loading trace points... [0.052s] Sorting trace points... [1.977s] Computing alignments... [87.58s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [2.246s] Computing alignments... [92.399s] Deallocating buffers... [0.064s] Loading trace points... [0s] [1497.66s] Deallocating reference... [0.077s] Loading reference sequences... [243.575s] Masking reference... [31.516s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.386s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.731s] Building query seed array... [3.317s] Computing hash join... [5.329s] Masking low complexity seeds... [0.231s] Searching alignments... [660.523s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.945s] Building query seed array... [3.658s] Computing hash join... [5.282s] Masking low complexity seeds... [0.237s] Searching alignments... [288.811s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.087s] Building query seed array... [3.901s] Computing hash join... [5.152s] Masking low complexity seeds... [0.237s] Searching alignments... [215.34s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.662s] Building query seed array... [3.165s] Computing hash join... [5.218s] Masking low complexity seeds... [0.238s] Searching alignments... [216.175s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.112s] Building query seed array... [2.936s] Computing hash join... [5.072s] Masking low complexity seeds... [0.227s] Searching alignments... [307.842s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.319s] Building query seed array... [3.382s] Computing hash join... [5.004s] Masking low complexity seeds... [0.218s] Searching alignments... [248.588s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.676s] Building query seed array... [3.415s] Computing hash join... [5.017s] Masking low complexity seeds... [0.224s] Searching alignments... [177.68s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.987s] Building query seed array... [2.913s] Computing hash join... [5.02s] Masking low complexity seeds... [0.229s] Searching alignments... [192.042s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.244s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [13.533s] Sorting trace points... [2.564s] Computing alignments... [87.534s] Deallocating buffers... [0.053s] Loading trace points... [0.073s] Sorting trace points... [2.108s] Computing alignments... [85.923s] Deallocating buffers... [0.051s] Loading trace points... [0.049s] Sorting trace points... [2.588s] Computing alignments... [86.492s] Deallocating buffers... [0.056s] Loading trace points... [0.061s] Sorting trace points... [2.367s] Computing alignments... [90.361s] Deallocating buffers... [0.06s] Loading trace points... [0.042s] Sorting trace points... [2.071s] Computing alignments... [84.677s] Deallocating buffers... [0.06s] Loading trace points... [0.06s] Sorting trace points... [2.57s] Computing alignments... [85.523s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [2.534s] Computing alignments... [87.487s] Deallocating buffers... [0.046s] Loading trace points... [0.064s] Sorting trace points... [2.239s] Computing alignments... [90.319s] Deallocating buffers... [0.046s] Loading trace points... [0.064s] Sorting trace points... [1.951s] Computing alignments... [87.221s] Deallocating buffers... [0.043s] Loading trace points... [0.071s] Sorting trace points... [2.203s] Computing alignments... [88.061s] Deallocating buffers... [0.062s] Loading trace points... [0.065s] Sorting trace points... [2.267s] Computing alignments... [88.573s] Deallocating buffers... [0.06s] Loading trace points... [0.063s] Sorting trace points... [2.825s] Computing alignments... [94.016s] Deallocating buffers... [0.059s] Loading trace points... [0.068s] Sorting trace points... [2.496s] Computing alignments... [85.91s] Deallocating buffers... [0.059s] Loading trace points... [0.049s] Sorting trace points... [2.606s] Computing alignments... [87.269s] Deallocating buffers... [0.059s] Loading trace points... [0.093s] Sorting trace points... [1.937s] Computing alignments... [85.204s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [2.353s] Computing alignments... [89.922s] Deallocating buffers... [0.071s] Loading trace points... [0s] [1457.51s] Deallocating reference... [0.091s] Loading reference sequences... [33.476s] Masking reference... [31.256s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.565s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.31s] Building query seed array... [3.281s] Computing hash join... [5.315s] Masking low complexity seeds... [0.243s] Searching alignments... [658.631s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.162s] Building query seed array... [3.658s] Computing hash join... [5.237s] Masking low complexity seeds... [0.241s] Searching alignments... [283.433s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.362s] Building query seed array... [3.914s] Computing hash join... [5.184s] Masking low complexity seeds... [0.233s] Searching alignments... [217.249s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.234s] Building query seed array... [3.109s] Computing hash join... [5.153s] Masking low complexity seeds... [0.233s] Searching alignments... [214.848s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.421s] Building query seed array... [2.923s] Computing hash join... [4.975s] Masking low complexity seeds... [0.226s] Searching alignments... [320.246s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.713s] Building query seed array... [3.308s] Computing hash join... [4.97s] Masking low complexity seeds... [0.221s] Searching alignments... [242.46s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.106s] Building query seed array... [3.551s] Computing hash join... [5.006s] Masking low complexity seeds... [0.217s] Searching alignments... [178.474s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.084s] Building query seed array... [2.917s] Computing hash join... [4.997s] Masking low complexity seeds... [0.219s] Searching alignments... [187.116s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.273s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.538s] Sorting trace points... [2.558s] Computing alignments... [82.038s] Deallocating buffers... [0.053s] Loading trace points... [0.088s] Sorting trace points... [2.593s] Computing alignments... [81.902s] Deallocating buffers... [0.047s] Loading trace points... [0.059s] Sorting trace points... [2.658s] Computing alignments... [82.166s] Deallocating buffers... [0.053s] Loading trace points... [0.071s] Sorting trace points... [2.477s] Computing alignments... [85.122s] Deallocating buffers... [0.055s] Loading trace points... [0.065s] Sorting trace points... [2.509s] Computing alignments... [80.139s] Deallocating buffers... [0.052s] Loading trace points... [0.061s] Sorting trace points... [2.253s] Computing alignments... [81.037s] Deallocating buffers... [0.038s] Loading trace points... [0.044s] Sorting trace points... [2.694s] Computing alignments... [81.974s] Deallocating buffers... [0.054s] Loading trace points... [0.065s] Sorting trace points... [2.689s] Computing alignments... [84.691s] Deallocating buffers... [0.047s] Loading trace points... [0.044s] Sorting trace points... [2.619s] Computing alignments... [82.708s] Deallocating buffers... [0.046s] Loading trace points... [0.071s] Sorting trace points... [2.374s] Computing alignments... [82.648s] Deallocating buffers... [0.034s] Loading trace points... [0.078s] Sorting trace points... [2.097s] Computing alignments... [84.022s] Deallocating buffers... [0.052s] Loading trace points... [0.052s] Sorting trace points... [2.007s] Computing alignments... [87.589s] Deallocating buffers... [0.054s] Loading trace points... [0.069s] Sorting trace points... [2.421s] Computing alignments... [80.553s] Deallocating buffers... [0.046s] Loading trace points... [0.066s] Sorting trace points... [2.552s] Computing alignments... [81.898s] Deallocating buffers... [0.053s] Loading trace points... [0.06s] Sorting trace points... [2.505s] Computing alignments... [80.263s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [2.607s] Computing alignments... [84.726s] Deallocating buffers... [0.047s] Loading trace points... [0s] [1378.41s] Deallocating reference... [0.073s] Loading reference sequences... [27.575s] Masking reference... [25.478s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [26.1s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.416s] Building query seed array... [3.265s] Computing hash join... [4.443s] Masking low complexity seeds... [0.225s] Searching alignments... [526.198s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.901s] Building query seed array... [3.695s] Computing hash join... [4.381s] Masking low complexity seeds... [0.234s] Searching alignments... [227.232s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.74s] Building query seed array... [3.717s] Computing hash join... [4.397s] Masking low complexity seeds... [0.226s] Searching alignments... [173.779s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.27s] Building query seed array... [3.116s] Computing hash join... [4.287s] Masking low complexity seeds... [0.218s] Searching alignments... [173.309s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.239s] Building query seed array... [2.943s] Computing hash join... [4.237s] Masking low complexity seeds... [0.214s] Searching alignments... [245.731s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.936s] Building query seed array... [3.327s] Computing hash join... [4.204s] Masking low complexity seeds... [0.208s] Searching alignments... [196.344s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.437s] Building query seed array... [3.467s] Computing hash join... [4.251s] Masking low complexity seeds... [0.212s] Searching alignments... [142.789s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.038s] Building query seed array... [2.914s] Computing hash join... [4.198s] Masking low complexity seeds... [0.215s] Searching alignments... [150.209s] Deallocating memory... [0s] Deallocating buffers... [0.132s] Clearing query masking... [2.229s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [10.958s] Sorting trace points... [2.177s] Computing alignments... [63.358s] Deallocating buffers... [0.04s] Loading trace points... [0.082s] Sorting trace points... [1.984s] Computing alignments... [63.13s] Deallocating buffers... [0.038s] Loading trace points... [0.061s] Sorting trace points... [1.667s] Computing alignments... [63.538s] Deallocating buffers... [0.04s] Loading trace points... [0.054s] Sorting trace points... [1.836s] Computing alignments... [66.16s] Deallocating buffers... [0.045s] Loading trace points... [0.067s] Sorting trace points... [1.756s] Computing alignments... [62.345s] Deallocating buffers... [0.031s] Loading trace points... [0.078s] Sorting trace points... [2.062s] Computing alignments... [63.338s] Deallocating buffers... [0.043s] Loading trace points... [0.052s] Sorting trace points... [2.124s] Computing alignments... [63.84s] Deallocating buffers... [0.029s] Loading trace points... [0.071s] Sorting trace points... [1.904s] Computing alignments... [66.168s] Deallocating buffers... [0.04s] Loading trace points... [0.057s] Sorting trace points... [1.559s] Computing alignments... [63.791s] Deallocating buffers... [0.04s] Loading trace points... [0.062s] Sorting trace points... [1.953s] Computing alignments... [64.754s] Deallocating buffers... [0.039s] Loading trace points... [0.132s] Sorting trace points... [2.263s] Computing alignments... [64.774s] Deallocating buffers... [0.038s] Loading trace points... [0.055s] Sorting trace points... [1.667s] Computing alignments... [68.722s] Deallocating buffers... [0.044s] Loading trace points... [0.07s] Sorting trace points... [2.184s] Computing alignments... [63.361s] Deallocating buffers... [0.036s] Loading trace points... [0.069s] Sorting trace points... [1.599s] Computing alignments... [63.825s] Deallocating buffers... [0.037s] Loading trace points... [0.051s] Sorting trace points... [2.098s] Computing alignments... [62.782s] Deallocating buffers... [0.045s] Loading trace points... [0s] Sorting trace points... [1.887s] Computing alignments... [65.981s] Deallocating buffers... [0.041s] Loading trace points... [0s] [1073.25s] Deallocating reference... [0.059s] Loading reference sequences... [0.087s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [4926.07s] [4926.07s] Deallocating queries... [0.085s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.083s] [3.916s] Closing the database... [0s] Cleaning up... [0s] Total time = 60153s Reported 5539695726 pairwise alignments, 5539695726 HSPs. 7075583 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-11.trimmed.R1.fastq.gz complete: CH07-11.trimmed.R1.blastx.meganized.daa Now MEGANizing CH07-11.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-11.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (198.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7,981.7s) Total reads: 7,075,583 With hits: 7,075,583 Alignments: 3,874,636,054 Assig. Taxonomy: 3,201,125 Assig. SEED: 105,687 Assig. EGGNOG: 38,117 Assig. GTDB: 257,192 Assig. EC: 467,722 Assig. INTERPRO2GO: 1,507,842 MinSupport set to: 3537 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 6,332 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (24.9s) Min-supp. changes: 4,469 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.1s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 177 Class. SEED: 510 Class. EGGNOG: 1,690 Class. GTDB: 52 Class. EC: 2,411 Class. INTERPRO2GO: 8,881 Total time: 8,226s Peak memory: 48.6 of 195.3G MEGANization of CH07-11.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-11.trimmed.R2.fastq.gz... e6200a85e87e74dda84a26b500a48b71 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-11.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-11.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.313s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.723s] Opening the output file... [0s] Loading query sequences... [140.722s] Masking queries... [38.122s] Algorithm: Double-indexed Building query histograms... [27.642s] Loading reference sequences... [29.449s] Masking reference... [32.174s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.567s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.919s] Building query seed array... [3.287s] Computing hash join... [5.464s] Masking low complexity seeds... [0.228s] Searching alignments... [688.594s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.696s] Building query seed array... [3.578s] Computing hash join... [5.25s] Masking low complexity seeds... [0.238s] Searching alignments... [288.527s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.399s] Building query seed array... [3.814s] Computing hash join... [5.169s] Masking low complexity seeds... [0.233s] Searching alignments... [223.375s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.226s] Building query seed array... [3.221s] Computing hash join... [5.143s] Masking low complexity seeds... [0.221s] Searching alignments... [217.943s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.182s] Building query seed array... [2.891s] Computing hash join... [4.954s] Masking low complexity seeds... [0.223s] Searching alignments... [322.563s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.601s] Building query seed array... [3.278s] Computing hash join... [5.069s] Masking low complexity seeds... [0.216s] Searching alignments... [252.334s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.637s] Building query seed array... [3.471s] Computing hash join... [4.994s] Masking low complexity seeds... [0.224s] Searching alignments... [184.344s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.197s] Building query seed array... [2.954s] Computing hash join... [5.06s] Masking low complexity seeds... [0.213s] Searching alignments... [197.235s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [2.351s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.013s] Sorting trace points... [2.727s] Computing alignments... [83.138s] Deallocating buffers... [0.057s] Loading trace points... [0.085s] Sorting trace points... [2.037s] Computing alignments... [82.206s] Deallocating buffers... [0.049s] Loading trace points... [0.062s] Sorting trace points... [2.624s] Computing alignments... [81.151s] Deallocating buffers... [0.057s] Loading trace points... [0.065s] Sorting trace points... [2.602s] Computing alignments... [84.13s] Deallocating buffers... [0.05s] Loading trace points... [0.079s] Sorting trace points... [2.689s] Computing alignments... [79.158s] Deallocating buffers... [0.046s] Loading trace points... [0.001s] Sorting trace points... [2.591s] Computing alignments... [80.952s] Deallocating buffers... [0.049s] Loading trace points... [0.063s] Sorting trace points... [2.574s] Computing alignments... [81.354s] Deallocating buffers... [0.046s] Loading trace points... [0.072s] Sorting trace points... [2.682s] Computing alignments... [83.862s] Deallocating buffers... [0.049s] Loading trace points... [0.07s] Sorting trace points... [2.571s] Computing alignments... [83.264s] Deallocating buffers... [0.048s] Loading trace points... [0.056s] Sorting trace points... [2.69s] Computing alignments... [83.066s] Deallocating buffers... [0.05s] Loading trace points... [0.085s] Sorting trace points... [2.254s] Computing alignments... [83.695s] Deallocating buffers... [0.052s] Loading trace points... [0.049s] Sorting trace points... [2.029s] Computing alignments... [85.394s] Deallocating buffers... [0.053s] Loading trace points... [0.056s] Sorting trace points... [2.589s] Computing alignments... [79.885s] Deallocating buffers... [0.047s] Loading trace points... [0.07s] Sorting trace points... [2.056s] Computing alignments... [81.041s] Deallocating buffers... [0.05s] Loading trace points... [0.001s] Sorting trace points... [2.654s] Computing alignments... [79.911s] Deallocating buffers... [0.052s] Loading trace points... [0s] Sorting trace points... [2.489s] Computing alignments... [79.87s] Deallocating buffers... [0.054s] Loading trace points... [0s] [1367.67s] Deallocating reference... [0.075s] Loading reference sequences... [36.923s] Masking reference... [32.138s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [31.885s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.998s] Building query seed array... [3.306s] Computing hash join... [5.316s] Masking low complexity seeds... [0.229s] Searching alignments... [667.206s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.208s] Building query seed array... [3.69s] Computing hash join... [5.143s] Masking low complexity seeds... [0.237s] Searching alignments... [287.444s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.15s] Building query seed array... [3.928s] Computing hash join... [5.269s] Masking low complexity seeds... [0.226s] Searching alignments... [218.509s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.914s] Building query seed array... [3.121s] Computing hash join... [5.153s] Masking low complexity seeds... [0.236s] Searching alignments... [217.771s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.229s] Building query seed array... [2.931s] Computing hash join... [5.031s] Masking low complexity seeds... [0.222s] Searching alignments... [325.942s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.013s] Building query seed array... [3.349s] Computing hash join... [4.936s] Masking low complexity seeds... [0.211s] Searching alignments... [246.497s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.555s] Building query seed array... [3.547s] Computing hash join... [4.967s] Masking low complexity seeds... [0.206s] Searching alignments... [178.585s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.744s] Building query seed array... [2.933s] Computing hash join... [4.987s] Masking low complexity seeds... [0.215s] Searching alignments... [188.02s] Deallocating memory... [0s] Deallocating buffers... [0.148s] Clearing query masking... [2.193s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.94s] Sorting trace points... [2.646s] Computing alignments... [87.693s] Deallocating buffers... [0.064s] Loading trace points... [0.087s] Sorting trace points... [2.141s] Computing alignments... [86.015s] Deallocating buffers... [0.059s] Loading trace points... [0.074s] Sorting trace points... [2.163s] Computing alignments... [84.564s] Deallocating buffers... [0.075s] Loading trace points... [0.049s] Sorting trace points... [1.99s] Computing alignments... [88.679s] Deallocating buffers... [0.056s] Loading trace points... [0.091s] Sorting trace points... [2.13s] Computing alignments... [82.61s] Deallocating buffers... [0.064s] Loading trace points... [0.057s] Sorting trace points... [2.184s] Computing alignments... [84.687s] Deallocating buffers... [0.063s] Loading trace points... [0.069s] Sorting trace points... [1.924s] Computing alignments... [84.272s] Deallocating buffers... [0.073s] Loading trace points... [0.057s] Sorting trace points... [2.378s] Computing alignments... [88.348s] Deallocating buffers... [0.06s] Loading trace points... [0.044s] Sorting trace points... [2.684s] Computing alignments... [87.575s] Deallocating buffers... [0.07s] Loading trace points... [0.119s] Sorting trace points... [2.716s] Computing alignments... [87.002s] Deallocating buffers... [0.059s] Loading trace points... [0.106s] Sorting trace points... [2.416s] Computing alignments... [87.297s] Deallocating buffers... [0.067s] Loading trace points... [0.099s] Sorting trace points... [2.709s] Computing alignments... [90.11s] Deallocating buffers... [0.061s] Loading trace points... [0.064s] Sorting trace points... [2.343s] Computing alignments... [82.637s] Deallocating buffers... [0.07s] Loading trace points... [0.481s] Sorting trace points... [2.782s] Computing alignments... [84.526s] Deallocating buffers... [0.057s] Loading trace points... [0.063s] Sorting trace points... [2.288s] Computing alignments... [84.547s] Deallocating buffers... [0.059s] Loading trace points... [0s] Sorting trace points... [1.856s] Computing alignments... [83.84s] Deallocating buffers... [0.064s] Loading trace points... [0s] [1428.29s] Deallocating reference... [0.074s] Loading reference sequences... [29.44s] Masking reference... [30.863s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.011s] Building reference histograms... [33.134s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.815s] Building query seed array... [3.315s] Computing hash join... [5.321s] Masking low complexity seeds... [0.228s] Searching alignments... [684.192s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.902s] Building query seed array... [3.7s] Computing hash join... [5.113s] Masking low complexity seeds... [0.237s] Searching alignments... [293.453s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.119s] Building query seed array... [3.86s] Computing hash join... [5.143s] Masking low complexity seeds... [0.217s] Searching alignments... [230.003s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.25s] Building query seed array... [3.069s] Computing hash join... [5.124s] Masking low complexity seeds... [0.228s] Searching alignments... [214.4s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.627s] Building query seed array... [2.935s] Computing hash join... [5.034s] Masking low complexity seeds... [0.217s] Searching alignments... [317.947s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.367s] Building query seed array... [3.373s] Computing hash join... [4.996s] Masking low complexity seeds... [0.214s] Searching alignments... [249.187s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.523s] Building query seed array... [3.534s] Computing hash join... [5.05s] Masking low complexity seeds... [0.209s] Searching alignments... [181.98s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.193s] Building query seed array... [3.028s] Computing hash join... [4.953s] Masking low complexity seeds... [0.214s] Searching alignments... [194.542s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [2.169s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.795s] Sorting trace points... [2.553s] Computing alignments... [88.71s] Deallocating buffers... [0.056s] Loading trace points... [0.07s] Sorting trace points... [2.302s] Computing alignments... [84.278s] Deallocating buffers... [0.06s] Loading trace points... [0.037s] Sorting trace points... [2.61s] Computing alignments... [83.563s] Deallocating buffers... [0.062s] Loading trace points... [0.001s] Sorting trace points... [2.574s] Computing alignments... [88.274s] Deallocating buffers... [0.071s] Loading trace points... [0.056s] Sorting trace points... [2.515s] Computing alignments... [82.361s] Deallocating buffers... [0.057s] Loading trace points... [0.093s] Sorting trace points... [1.969s] Computing alignments... [84.821s] Deallocating buffers... [0.057s] Loading trace points... [0.03s] Sorting trace points... [2.574s] Computing alignments... [84.674s] Deallocating buffers... [0.07s] Loading trace points... [0.072s] Sorting trace points... [1.997s] Computing alignments... [87.751s] Deallocating buffers... [0.064s] Loading trace points... [0.087s] Sorting trace points... [1.917s] Computing alignments... [87.711s] Deallocating buffers... [0.07s] Loading trace points... [0.055s] Sorting trace points... [2.056s] Computing alignments... [86.929s] Deallocating buffers... [0.057s] Loading trace points... [0.507s] Sorting trace points... [2.268s] Computing alignments... [87.328s] Deallocating buffers... [0.069s] Loading trace points... [0.056s] Sorting trace points... [2.677s] Computing alignments... [89.898s] Deallocating buffers... [0.056s] Loading trace points... [0.001s] Sorting trace points... [1.942s] Computing alignments... [81.806s] Deallocating buffers... [0.053s] Loading trace points... [0.064s] Sorting trace points... [1.91s] Computing alignments... [83.826s] Deallocating buffers... [0.059s] Loading trace points... [0.082s] Sorting trace points... [2.396s] Computing alignments... [84.215s] Deallocating buffers... [0.063s] Loading trace points... [0s] Sorting trace points... [1.865s] Computing alignments... [83.45s] Deallocating buffers... [0.061s] Loading trace points... [0s] [1421.8s] Deallocating reference... [0.071s] Loading reference sequences... [33.931s] Masking reference... [31.477s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.04s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.396s] Building query seed array... [3.348s] Computing hash join... [5.169s] Masking low complexity seeds... [0.228s] Searching alignments... [692.96s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.079s] Building query seed array... [3.782s] Computing hash join... [5.225s] Masking low complexity seeds... [0.229s] Searching alignments... [294.079s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.421s] Building query seed array... [3.925s] Computing hash join... [5.211s] Masking low complexity seeds... [0.221s] Searching alignments... [220.218s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.9s] Building query seed array... [3.238s] Computing hash join... [5.144s] Masking low complexity seeds... [0.231s] Searching alignments... [217.003s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.039s] Building query seed array... [2.789s] Computing hash join... [5.161s] Masking low complexity seeds... [0.217s] Searching alignments... [331.673s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.408s] Building query seed array... [3.336s] Computing hash join... [5.004s] Masking low complexity seeds... [0.214s] Searching alignments... [255.985s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.247s] Building query seed array... [3.484s] Computing hash join... [5.039s] Masking low complexity seeds... [0.214s] Searching alignments... [182.445s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.075s] Building query seed array... [2.945s] Computing hash join... [4.993s] Masking low complexity seeds... [0.213s] Searching alignments... [191.035s] Deallocating memory... [0s] Deallocating buffers... [0.146s] Clearing query masking... [2.21s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.796s] Sorting trace points... [2.736s] Computing alignments... [85.749s] Deallocating buffers... [0.051s] Loading trace points... [0.072s] Sorting trace points... [2.296s] Computing alignments... [83.715s] Deallocating buffers... [0.045s] Loading trace points... [0.31s] Sorting trace points... [2s] Computing alignments... [82.784s] Deallocating buffers... [0.051s] Loading trace points... [0.084s] Sorting trace points... [2.729s] Computing alignments... [86.296s] Deallocating buffers... [0.057s] Loading trace points... [0.069s] Sorting trace points... [2.414s] Computing alignments... [80.875s] Deallocating buffers... [0.055s] Loading trace points... [0.065s] Sorting trace points... [2.438s] Computing alignments... [84.04s] Deallocating buffers... [0.06s] Loading trace points... [0.063s] Sorting trace points... [2.361s] Computing alignments... [82.476s] Deallocating buffers... [0.053s] Loading trace points... [0.065s] Sorting trace points... [2.797s] Computing alignments... [85.932s] Deallocating buffers... [0.047s] Loading trace points... [0.062s] Sorting trace points... [2.618s] Computing alignments... [85.974s] Deallocating buffers... [0.055s] Loading trace points... [0.073s] Sorting trace points... [1.948s] Computing alignments... [84.653s] Deallocating buffers... [0.054s] Loading trace points... [0.075s] Sorting trace points... [2.151s] Computing alignments... [85.101s] Deallocating buffers... [0.053s] Loading trace points... [0.047s] Sorting trace points... [2.676s] Computing alignments... [87.994s] Deallocating buffers... [0.056s] Loading trace points... [0.12s] Sorting trace points... [2.714s] Computing alignments... [80.94s] Deallocating buffers... [0.043s] Loading trace points... [0.068s] Sorting trace points... [1.907s] Computing alignments... [82.349s] Deallocating buffers... [0.052s] Loading trace points... [0.087s] Sorting trace points... [2.264s] Computing alignments... [82.146s] Deallocating buffers... [0.052s] Loading trace points... [0s] Sorting trace points... [2.014s] Computing alignments... [82.026s] Deallocating buffers... [0.053s] Loading trace points... [0s] [1397.11s] Deallocating reference... [0.073s] Loading reference sequences... [242.919s] Masking reference... [31.493s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.028s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.289s] Building query seed array... [3.26s] Computing hash join... [5.234s] Masking low complexity seeds... [0.226s] Searching alignments... [677.225s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.167s] Building query seed array... [3.719s] Computing hash join... [5.165s] Masking low complexity seeds... [0.229s] Searching alignments... [286.876s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.09s] Building query seed array... [3.949s] Computing hash join... [5.258s] Masking low complexity seeds... [0.235s] Searching alignments... [217.935s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.279s] Building query seed array... [3.224s] Computing hash join... [5.133s] Masking low complexity seeds... [0.229s] Searching alignments... [218.534s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.013s] Building query seed array... [2.92s] Computing hash join... [4.996s] Masking low complexity seeds... [0.215s] Searching alignments... [326.564s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.923s] Building query seed array... [3.364s] Computing hash join... [4.923s] Masking low complexity seeds... [0.206s] Searching alignments... [255.223s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.392s] Building query seed array... [3.523s] Computing hash join... [5.008s] Masking low complexity seeds... [0.215s] Searching alignments... [179.87s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.011s] Building query seed array... [3.019s] Computing hash join... [4.947s] Masking low complexity seeds... [0.213s] Searching alignments... [186.838s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [2.273s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.885s] Sorting trace points... [2.65s] Computing alignments... [90.954s] Deallocating buffers... [0.061s] Loading trace points... [0.071s] Sorting trace points... [2.188s] Computing alignments... [88.725s] Deallocating buffers... [0.056s] Loading trace points... [0.002s] Sorting trace points... [2.343s] Computing alignments... [87.58s] Deallocating buffers... [0.063s] Loading trace points... [0.062s] Sorting trace points... [2.504s] Computing alignments... [91.697s] Deallocating buffers... [0.05s] Loading trace points... [0.053s] Sorting trace points... [2.217s] Computing alignments... [85.884s] Deallocating buffers... [0.06s] Loading trace points... [0.933s] Sorting trace points... [1.904s] Computing alignments... [88.114s] Deallocating buffers... [0.057s] Loading trace points... [0.068s] Sorting trace points... [2.007s] Computing alignments... [87.789s] Deallocating buffers... [0.061s] Loading trace points... [0.085s] Sorting trace points... [2.662s] Computing alignments... [92.099s] Deallocating buffers... [0.055s] Loading trace points... [0.07s] Sorting trace points... [2.641s] Computing alignments... [90.824s] Deallocating buffers... [0.061s] Loading trace points... [0.003s] Sorting trace points... [2.493s] Computing alignments... [90.366s] Deallocating buffers... [0.054s] Loading trace points... [0.056s] Sorting trace points... [2.013s] Computing alignments... [90.508s] Deallocating buffers... [0.063s] Loading trace points... [0.065s] Sorting trace points... [2.682s] Computing alignments... [93.199s] Deallocating buffers... [0.068s] Loading trace points... [0.08s] Sorting trace points... [2.05s] Computing alignments... [85.227s] Deallocating buffers... [0.064s] Loading trace points... [0.076s] Sorting trace points... [2.534s] Computing alignments... [87.368s] Deallocating buffers... [0.061s] Loading trace points... [0.068s] Sorting trace points... [2.09s] Computing alignments... [87.512s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [2.072s] Computing alignments... [86.817s] Deallocating buffers... [0.065s] Loading trace points... [0s] [1478.38s] Deallocating reference... [0.084s] Loading reference sequences... [34.023s] Masking reference... [30.894s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.747s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.213s] Building query seed array... [3.275s] Computing hash join... [5.271s] Masking low complexity seeds... [0.226s] Searching alignments... [673.395s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.675s] Building query seed array... [3.745s] Computing hash join... [5.258s] Masking low complexity seeds... [0.227s] Searching alignments... [286.629s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.102s] Building query seed array... [3.954s] Computing hash join... [5.317s] Masking low complexity seeds... [0.232s] Searching alignments... [219.754s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.124s] Building query seed array... [3.185s] Computing hash join... [5.159s] Masking low complexity seeds... [0.237s] Searching alignments... [214.143s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.789s] Building query seed array... [2.953s] Computing hash join... [4.977s] Masking low complexity seeds... [0.217s] Searching alignments... [323.522s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.526s] Building query seed array... [3.339s] Computing hash join... [4.971s] Masking low complexity seeds... [0.212s] Searching alignments... [248.395s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.355s] Building query seed array... [3.521s] Computing hash join... [4.982s] Masking low complexity seeds... [0.21s] Searching alignments... [179.27s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.154s] Building query seed array... [2.929s] Computing hash join... [4.969s] Masking low complexity seeds... [0.214s] Searching alignments... [192.2s] Deallocating memory... [0s] Deallocating buffers... [0.147s] Clearing query masking... [2.149s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.883s] Sorting trace points... [2.72s] Computing alignments... [87.788s] Deallocating buffers... [0.056s] Loading trace points... [0.077s] Sorting trace points... [2.173s] Computing alignments... [85.6s] Deallocating buffers... [0.051s] Loading trace points... [0.09s] Sorting trace points... [2.108s] Computing alignments... [84.72s] Deallocating buffers... [0.056s] Loading trace points... [0.065s] Sorting trace points... [2.648s] Computing alignments... [88.236s] Deallocating buffers... [0.049s] Loading trace points... [0.097s] Sorting trace points... [1.844s] Computing alignments... [82.776s] Deallocating buffers... [0.047s] Loading trace points... [0.08s] Sorting trace points... [2.701s] Computing alignments... [85.152s] Deallocating buffers... [0.056s] Loading trace points... [0.062s] Sorting trace points... [1.966s] Computing alignments... [85.554s] Deallocating buffers... [0.051s] Loading trace points... [0.002s] Sorting trace points... [2.692s] Computing alignments... [88.021s] Deallocating buffers... [0.049s] Loading trace points... [0.074s] Sorting trace points... [2.571s] Computing alignments... [87.948s] Deallocating buffers... [0.047s] Loading trace points... [0.09s] Sorting trace points... [2.605s] Computing alignments... [87.374s] Deallocating buffers... [0.054s] Loading trace points... [0.048s] Sorting trace points... [2.582s] Computing alignments... [87.563s] Deallocating buffers... [0.053s] Loading trace points... [0.076s] Sorting trace points... [2.714s] Computing alignments... [90.287s] Deallocating buffers... [0.049s] Loading trace points... [0.062s] Sorting trace points... [2.144s] Computing alignments... [82.563s] Deallocating buffers... [0.059s] Loading trace points... [0.047s] Sorting trace points... [2.459s] Computing alignments... [83.851s] Deallocating buffers... [0.058s] Loading trace points... [0.061s] Sorting trace points... [2.493s] Computing alignments... [84.136s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [1.829s] Computing alignments... [83.724s] Deallocating buffers... [0.051s] Loading trace points... [0s] [1429.33s] Deallocating reference... [0.072s] Loading reference sequences... [29.773s] Masking reference... [30.932s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.717s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.28s] Building query seed array... [3.297s] Computing hash join... [5.266s] Masking low complexity seeds... [0.23s] Searching alignments... [685.429s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.276s] Building query seed array... [3.735s] Computing hash join... [5.197s] Masking low complexity seeds... [0.223s] Searching alignments... [288.61s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.354s] Building query seed array... [3.826s] Computing hash join... [5.179s] Masking low complexity seeds... [0.226s] Searching alignments... [215.175s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.376s] Building query seed array... [3.202s] Computing hash join... [5.16s] Masking low complexity seeds... [0.233s] Searching alignments... [216.099s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.163s] Building query seed array... [2.911s] Computing hash join... [4.923s] Masking low complexity seeds... [0.215s] Searching alignments... [329.155s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.68s] Building query seed array... [3.28s] Computing hash join... [5.055s] Masking low complexity seeds... [0.225s] Searching alignments... [248.573s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.072s] Building query seed array... [3.504s] Computing hash join... [5.034s] Masking low complexity seeds... [0.213s] Searching alignments... [180.106s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.017s] Building query seed array... [2.982s] Computing hash join... [5.045s] Masking low complexity seeds... [0.215s] Searching alignments... [191.529s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.152s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.986s] Sorting trace points... [2.793s] Computing alignments... [89.164s] Deallocating buffers... [0.049s] Loading trace points... [0.103s] Sorting trace points... [2.217s] Computing alignments... [86.063s] Deallocating buffers... [0.048s] Loading trace points... [0.077s] Sorting trace points... [1.992s] Computing alignments... [84.783s] Deallocating buffers... [0.054s] Loading trace points... [0.053s] Sorting trace points... [2.654s] Computing alignments... [88.775s] Deallocating buffers... [0.05s] Loading trace points... [0.131s] Sorting trace points... [2.512s] Computing alignments... [83.625s] Deallocating buffers... [0.054s] Loading trace points... [0.052s] Sorting trace points... [2.389s] Computing alignments... [85.944s] Deallocating buffers... [0.049s] Loading trace points... [0.198s] Sorting trace points... [2.019s] Computing alignments... [86.076s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [2.636s] Computing alignments... [89.233s] Deallocating buffers... [0.048s] Loading trace points... [0.064s] Sorting trace points... [2.586s] Computing alignments... [88.215s] Deallocating buffers... [0.047s] Loading trace points... [0.084s] Sorting trace points... [2.385s] Computing alignments... [87.784s] Deallocating buffers... [0.056s] Loading trace points... [0.038s] Sorting trace points... [2.707s] Computing alignments... [88.151s] Deallocating buffers... [0.058s] Loading trace points... [0.075s] Sorting trace points... [2.767s] Computing alignments... [91.119s] Deallocating buffers... [0.066s] Loading trace points... [0.077s] Sorting trace points... [2.515s] Computing alignments... [83.214s] Deallocating buffers... [0.054s] Loading trace points... [0.043s] Sorting trace points... [1.966s] Computing alignments... [84.513s] Deallocating buffers... [0.051s] Loading trace points... [0.051s] Sorting trace points... [1.896s] Computing alignments... [84.988s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [2.247s] Computing alignments... [84.634s] Deallocating buffers... [0.054s] Loading trace points... [0s] [1440.55s] Deallocating reference... [0.069s] Loading reference sequences... [29.502s] Masking reference... [30.868s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.459s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.35s] Building query seed array... [3.24s] Computing hash join... [5.257s] Masking low complexity seeds... [0.226s] Searching alignments... [678.995s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.129s] Building query seed array... [3.689s] Computing hash join... [5.183s] Masking low complexity seeds... [0.225s] Searching alignments... [290.911s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.337s] Building query seed array... [3.75s] Computing hash join... [5.127s] Masking low complexity seeds... [0.223s] Searching alignments... [217.521s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [3.201s] Computing hash join... [5.138s] Masking low complexity seeds... [0.231s] Searching alignments... [217.601s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.132s] Building query seed array... [2.923s] Computing hash join... [4.96s] Masking low complexity seeds... [0.212s] Searching alignments... [326.896s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.102s] Building query seed array... [3.354s] Computing hash join... [4.93s] Masking low complexity seeds... [0.212s] Searching alignments... [247.783s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.178s] Building query seed array... [3.485s] Computing hash join... [4.995s] Masking low complexity seeds... [0.216s] Searching alignments... [182.536s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.831s] Building query seed array... [2.944s] Computing hash join... [4.943s] Masking low complexity seeds... [0.211s] Searching alignments... [186.991s] Deallocating memory... [0s] Deallocating buffers... [0.156s] Clearing query masking... [2.274s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.816s] Sorting trace points... [2.683s] Computing alignments... [84.172s] Deallocating buffers... [0.043s] Loading trace points... [0.078s] Sorting trace points... [2.597s] Computing alignments... [82.789s] Deallocating buffers... [0.055s] Loading trace points... [0.718s] Sorting trace points... [2.561s] Computing alignments... [81.662s] Deallocating buffers... [0.053s] Loading trace points... [0.049s] Sorting trace points... [2.469s] Computing alignments... [85.268s] Deallocating buffers... [0.05s] Loading trace points... [0.061s] Sorting trace points... [2.154s] Computing alignments... [79.849s] Deallocating buffers... [0.046s] Loading trace points... [0.097s] Sorting trace points... [2.154s] Computing alignments... [82.302s] Deallocating buffers... [0.048s] Loading trace points... [0.057s] Sorting trace points... [1.873s] Computing alignments... [81.968s] Deallocating buffers... [0.053s] Loading trace points... [0.064s] Sorting trace points... [2.627s] Computing alignments... [85.282s] Deallocating buffers... [0.05s] Loading trace points... [0.076s] Sorting trace points... [2.066s] Computing alignments... [84.617s] Deallocating buffers... [0.052s] Loading trace points... [0.057s] Sorting trace points... [1.933s] Computing alignments... [83.75s] Deallocating buffers... [0.062s] Loading trace points... [0.099s] Sorting trace points... [2.635s] Computing alignments... [84.767s] Deallocating buffers... [0.051s] Loading trace points... [0.045s] Sorting trace points... [2.103s] Computing alignments... [86.693s] Deallocating buffers... [0.054s] Loading trace points... [0.039s] Sorting trace points... [1.883s] Computing alignments... [79.83s] Deallocating buffers... [0.05s] Loading trace points... [0.064s] Sorting trace points... [2.481s] Computing alignments... [81.911s] Deallocating buffers... [0.053s] Loading trace points... [0.088s] Sorting trace points... [2.313s] Computing alignments... [80.982s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [2.307s] Computing alignments... [80.99s] Deallocating buffers... [0.042s] Loading trace points... [0s] [1379.98s] Deallocating reference... [0.07s] Loading reference sequences... [31.541s] Masking reference... [30.932s] Initializing dictionary... [0.087s] Initializing temporary storage... [0.008s] Building reference histograms... [32.878s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.524s] Building query seed array... [3.333s] Computing hash join... [5.171s] Masking low complexity seeds... [0.226s] Searching alignments... [685.697s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.458s] Building query seed array... [3.743s] Computing hash join... [5.119s] Masking low complexity seeds... [0.227s] Searching alignments... [291.375s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.399s] Building query seed array... [3.743s] Computing hash join... [5.106s] Masking low complexity seeds... [0.22s] Searching alignments... [223.859s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.371s] Building query seed array... [3.274s] Computing hash join... [5.203s] Masking low complexity seeds... [0.242s] Searching alignments... [216.687s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.023s] Building query seed array... [2.992s] Computing hash join... [4.935s] Masking low complexity seeds... [0.221s] Searching alignments... [323.775s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.638s] Building query seed array... [3.263s] Computing hash join... [4.966s] Masking low complexity seeds... [0.21s] Searching alignments... [249.595s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.581s] Building query seed array... [3.834s] Computing hash join... [4.964s] Masking low complexity seeds... [0.208s] Searching alignments... [185.207s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.136s] Building query seed array... [2.924s] Computing hash join... [5.059s] Masking low complexity seeds... [0.217s] Searching alignments... [194.201s] Deallocating memory... [0s] Deallocating buffers... [0.146s] Clearing query masking... [2.124s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.852s] Sorting trace points... [2.63s] Computing alignments... [86.11s] Deallocating buffers... [0.05s] Loading trace points... [0.062s] Sorting trace points... [2.288s] Computing alignments... [83.783s] Deallocating buffers... [0.053s] Loading trace points... [0.069s] Sorting trace points... [2.246s] Computing alignments... [82.507s] Deallocating buffers... [0.056s] Loading trace points... [0.069s] Sorting trace points... [2.057s] Computing alignments... [87.526s] Deallocating buffers... [0.07s] Loading trace points... [0.098s] Sorting trace points... [1.939s] Computing alignments... [81.497s] Deallocating buffers... [0.057s] Loading trace points... [0.039s] Sorting trace points... [2.097s] Computing alignments... [83.397s] Deallocating buffers... [0.048s] Loading trace points... [0.039s] Sorting trace points... [2.644s] Computing alignments... [83.236s] Deallocating buffers... [0.063s] Loading trace points... [0.119s] Sorting trace points... [2.101s] Computing alignments... [87.05s] Deallocating buffers... [0.068s] Loading trace points... [0.068s] Sorting trace points... [2.543s] Computing alignments... [85.917s] Deallocating buffers... [0.063s] Loading trace points... [0.804s] Sorting trace points... [2.525s] Computing alignments... [85.396s] Deallocating buffers... [0.065s] Loading trace points... [0.043s] Sorting trace points... [1.968s] Computing alignments... [85.457s] Deallocating buffers... [0.065s] Loading trace points... [0.062s] Sorting trace points... [2.737s] Computing alignments... [88.442s] Deallocating buffers... [0.057s] Loading trace points... [0.055s] Sorting trace points... [2.056s] Computing alignments... [81.424s] Deallocating buffers... [0.059s] Loading trace points... [0.041s] Sorting trace points... [2.605s] Computing alignments... [82.849s] Deallocating buffers... [0.053s] Loading trace points... [0.053s] Sorting trace points... [2.174s] Computing alignments... [82.742s] Deallocating buffers... [0.065s] Loading trace points... [0s] Sorting trace points... [2.09s] Computing alignments... [82.557s] Deallocating buffers... [0.054s] Loading trace points... [0s] [1403.12s] Deallocating reference... [0.071s] Loading reference sequences... [34.626s] Masking reference... [31.286s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.493s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [11.009s] Building query seed array... [3.329s] Computing hash join... [5.261s] Masking low complexity seeds... [0.232s] Searching alignments... [683.238s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.487s] Building query seed array... [3.732s] Computing hash join... [5.201s] Masking low complexity seeds... [0.227s] Searching alignments... [287.828s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.602s] Building query seed array... [3.771s] Computing hash join... [5.184s] Masking low complexity seeds... [0.228s] Searching alignments... [221.253s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.113s] Building query seed array... [3.213s] Computing hash join... [5.234s] Masking low complexity seeds... [0.234s] Searching alignments... [214.566s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.806s] Building query seed array... [2.96s] Computing hash join... [5.052s] Masking low complexity seeds... [0.217s] Searching alignments... [331.819s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.076s] Building query seed array... [3.264s] Computing hash join... [4.933s] Masking low complexity seeds... [0.215s] Searching alignments... [247.673s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.177s] Building query seed array... [3.469s] Computing hash join... [5.054s] Masking low complexity seeds... [0.219s] Searching alignments... [179.742s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.11s] Building query seed array... [2.953s] Computing hash join... [5.082s] Masking low complexity seeds... [0.225s] Searching alignments... [190.048s] Deallocating memory... [0s] Deallocating buffers... [0.149s] Clearing query masking... [2.454s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [15.203s] Sorting trace points... [2.67s] Computing alignments... [76.424s] Deallocating buffers... [0.048s] Loading trace points... [0.065s] Sorting trace points... [2.474s] Computing alignments... [75.702s] Deallocating buffers... [0.047s] Loading trace points... [0.064s] Sorting trace points... [2.007s] Computing alignments... [75.184s] Deallocating buffers... [0.048s] Loading trace points... [0.073s] Sorting trace points... [1.991s] Computing alignments... [77.759s] Deallocating buffers... [0.055s] Loading trace points... [0.065s] Sorting trace points... [2.556s] Computing alignments... [73.888s] Deallocating buffers... [0.053s] Loading trace points... [0.115s] Sorting trace points... [2.005s] Computing alignments... [75.594s] Deallocating buffers... [0.049s] Loading trace points... [0.051s] Sorting trace points... [2.533s] Computing alignments... [74.992s] Deallocating buffers... [0.053s] Loading trace points... [0.065s] Sorting trace points... [2.67s] Computing alignments... [78.17s] Deallocating buffers... [0.057s] Loading trace points... [0.07s] Sorting trace points... [2.565s] Computing alignments... [77.021s] Deallocating buffers... [0.052s] Loading trace points... [0.056s] Sorting trace points... [2.589s] Computing alignments... [76.707s] Deallocating buffers... [0.033s] Loading trace points... [0.047s] Sorting trace points... [2.229s] Computing alignments... [77.144s] Deallocating buffers... [0.05s] Loading trace points... [0.06s] Sorting trace points... [2.446s] Computing alignments... [79.079s] Deallocating buffers... [0.049s] Loading trace points... [0.05s] Sorting trace points... [2.293s] Computing alignments... [73.913s] Deallocating buffers... [0.034s] Loading trace points... [0.061s] Sorting trace points... [2.551s] Computing alignments... [74.837s] Deallocating buffers... [0.057s] Loading trace points... [0.067s] Sorting trace points... [2.623s] Computing alignments... [74.475s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.838s] Computing alignments... [74.703s] Deallocating buffers... [0.055s] Loading trace points... [0s] [1270.63s] Deallocating reference... [0.074s] Loading reference sequences... [29.591s] Masking reference... [30.895s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.439s] Allocating buffers... [0.001s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.516s] Building query seed array... [3.196s] Computing hash join... [5.213s] Masking low complexity seeds... [0.236s] Searching alignments... [683.37s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.407s] Building query seed array... [3.643s] Computing hash join... [5.173s] Masking low complexity seeds... [0.238s] Searching alignments... [290.529s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.523s] Building query seed array... [3.869s] Computing hash join... [5.234s] Masking low complexity seeds... [0.227s] Searching alignments... [226.297s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.943s] Building query seed array... [3.169s] Computing hash join... [5.166s] Masking low complexity seeds... [0.235s] Searching alignments... [215.684s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.963s] Building query seed array... [2.957s] Computing hash join... [4.984s] Masking low complexity seeds... [0.221s] Searching alignments... [321.814s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.167s] Building query seed array... [3.351s] Computing hash join... [4.922s] Masking low complexity seeds... [0.214s] Searching alignments... [251.055s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.274s] Building query seed array... [3.633s] Computing hash join... [4.991s] Masking low complexity seeds... [0.213s] Searching alignments... [183.807s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.841s] Building query seed array... [2.955s] Computing hash join... [5.028s] Masking low complexity seeds... [0.217s] Searching alignments... [192.59s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [2.172s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [14.037s] Sorting trace points... [2.657s] Computing alignments... [94.286s] Deallocating buffers... [0.066s] Loading trace points... [0.076s] Sorting trace points... [2.078s] Computing alignments... [90.281s] Deallocating buffers... [0.056s] Loading trace points... [0.001s] Sorting trace points... [2.321s] Computing alignments... [89.632s] Deallocating buffers... [0.056s] Loading trace points... [0.072s] Sorting trace points... [2.409s] Computing alignments... [93.732s] Deallocating buffers... [0.069s] Loading trace points... [0.065s] Sorting trace points... [1.973s] Computing alignments... [88.019s] Deallocating buffers... [0.051s] Loading trace points... [0.066s] Sorting trace points... [2.143s] Computing alignments... [90.542s] Deallocating buffers... [0.068s] Loading trace points... [0.069s] Sorting trace points... [2.499s] Computing alignments... [90.402s] Deallocating buffers... [0.056s] Loading trace points... [0.054s] Sorting trace points... [2.029s] Computing alignments... [93.07s] Deallocating buffers... [0.054s] Loading trace points... [0.052s] Sorting trace points... [2.563s] Computing alignments... [93.661s] Deallocating buffers... [0.062s] Loading trace points... [0.001s] Sorting trace points... [2.526s] Computing alignments... [92.003s] Deallocating buffers... [0.054s] Loading trace points... [0.071s] Sorting trace points... [2.512s] Computing alignments... [93.165s] Deallocating buffers... [0.058s] Loading trace points... [0.072s] Sorting trace points... [2.736s] Computing alignments... [95.47s] Deallocating buffers... [0.067s] Loading trace points... [0.126s] Sorting trace points... [1.96s] Computing alignments... [87.18s] Deallocating buffers... [0.06s] Loading trace points... [0.059s] Sorting trace points... [2.655s] Computing alignments... [89.382s] Deallocating buffers... [0.06s] Loading trace points... [0.071s] Sorting trace points... [2.312s] Computing alignments... [88.88s] Deallocating buffers... [0.059s] Loading trace points... [0s] Sorting trace points... [2.384s] Computing alignments... [88.783s] Deallocating buffers... [0.065s] Loading trace points... [0s] [1512.21s] Deallocating reference... [0.076s] Loading reference sequences... [242.601s] Masking reference... [30.894s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.453s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.305s] Building query seed array... [3.266s] Computing hash join... [5.273s] Masking low complexity seeds... [0.233s] Searching alignments... [672.989s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.511s] Building query seed array... [3.721s] Computing hash join... [5.153s] Masking low complexity seeds... [0.234s] Searching alignments... [291.479s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.455s] Building query seed array... [3.856s] Computing hash join... [5.234s] Masking low complexity seeds... [0.228s] Searching alignments... [218.881s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.82s] Building query seed array... [3.134s] Computing hash join... [5.203s] Masking low complexity seeds... [0.23s] Searching alignments... [216.833s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.318s] Building query seed array... [2.993s] Computing hash join... [5.589s] Masking low complexity seeds... [0.231s] Searching alignments... [323.968s] Deallocating memory... [0.002s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.164s] Building query seed array... [3.327s] Computing hash join... [4.933s] Masking low complexity seeds... [0.214s] Searching alignments... [246.235s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.757s] Building query seed array... [3.387s] Computing hash join... [4.999s] Masking low complexity seeds... [0.224s] Searching alignments... [179.595s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.099s] Building query seed array... [2.987s] Computing hash join... [5.116s] Masking low complexity seeds... [0.222s] Searching alignments... [192.079s] Deallocating memory... [0.003s] Deallocating buffers... [0.147s] Clearing query masking... [2.299s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.977s] Sorting trace points... [2.898s] Computing alignments... [90.914s] Deallocating buffers... [0.062s] Loading trace points... [0.091s] Sorting trace points... [2.204s] Computing alignments... [87.42s] Deallocating buffers... [0.058s] Loading trace points... [0.082s] Sorting trace points... [2.082s] Computing alignments... [86.691s] Deallocating buffers... [0.066s] Loading trace points... [0.058s] Sorting trace points... [2.643s] Computing alignments... [90.726s] Deallocating buffers... [0.054s] Loading trace points... [0.065s] Sorting trace points... [2.646s] Computing alignments... [85.397s] Deallocating buffers... [0.067s] Loading trace points... [0.062s] Sorting trace points... [2.447s] Computing alignments... [87.393s] Deallocating buffers... [0.043s] Loading trace points... [0.046s] Sorting trace points... [2.724s] Computing alignments... [87.809s] Deallocating buffers... [0.059s] Loading trace points... [0.094s] Sorting trace points... [2.738s] Computing alignments... [90.299s] Deallocating buffers... [0.053s] Loading trace points... [0.065s] Sorting trace points... [2.501s] Computing alignments... [90.724s] Deallocating buffers... [0.06s] Loading trace points... [0.08s] Sorting trace points... [2.386s] Computing alignments... [89.832s] Deallocating buffers... [0.066s] Loading trace points... [0.048s] Sorting trace points... [2.185s] Computing alignments... [89.813s] Deallocating buffers... [0.058s] Loading trace points... [0.069s] Sorting trace points... [2.784s] Computing alignments... [92.854s] Deallocating buffers... [0.049s] Loading trace points... [0.052s] Sorting trace points... [2.042s] Computing alignments... [84.978s] Deallocating buffers... [0.065s] Loading trace points... [0.042s] Sorting trace points... [2.113s] Computing alignments... [86.595s] Deallocating buffers... [0.058s] Loading trace points... [0.055s] Sorting trace points... [2.179s] Computing alignments... [86.834s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [2.559s] Computing alignments... [85.775s] Deallocating buffers... [0.065s] Loading trace points... [0s] [1469.1s] Deallocating reference... [0.069s] Loading reference sequences... [30.987s] Masking reference... [32.018s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.183s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.886s] Building query seed array... [3.133s] Computing hash join... [5.301s] Masking low complexity seeds... [0.226s] Searching alignments... [685.125s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.24s] Building query seed array... [3.685s] Computing hash join... [5.24s] Masking low complexity seeds... [0.236s] Searching alignments... [296.267s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.375s] Building query seed array... [3.794s] Computing hash join... [5.187s] Masking low complexity seeds... [0.228s] Searching alignments... [219.703s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.585s] Building query seed array... [3.143s] Computing hash join... [5.148s] Masking low complexity seeds... [0.225s] Searching alignments... [215.163s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.16s] Building query seed array... [2.947s] Computing hash join... [4.947s] Masking low complexity seeds... [0.214s] Searching alignments... [326.147s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.547s] Building query seed array... [3.219s] Computing hash join... [4.945s] Masking low complexity seeds... [0.204s] Searching alignments... [252.931s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.366s] Building query seed array... [3.431s] Computing hash join... [5.08s] Masking low complexity seeds... [0.209s] Searching alignments... [179.882s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.183s] Building query seed array... [3.053s] Computing hash join... [5.011s] Masking low complexity seeds... [0.216s] Searching alignments... [195.859s] Deallocating memory... [0s] Deallocating buffers... [0.149s] Clearing query masking... [2.191s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.989s] Sorting trace points... [2.705s] Computing alignments... [85.108s] Deallocating buffers... [0.046s] Loading trace points... [0.096s] Sorting trace points... [2.119s] Computing alignments... [82.338s] Deallocating buffers... [0.049s] Loading trace points... [0.086s] Sorting trace points... [2.657s] Computing alignments... [82.375s] Deallocating buffers... [0.046s] Loading trace points... [0.069s] Sorting trace points... [1.955s] Computing alignments... [85.276s] Deallocating buffers... [0.052s] Loading trace points... [0.074s] Sorting trace points... [2.425s] Computing alignments... [80.915s] Deallocating buffers... [0.046s] Loading trace points... [0.12s] Sorting trace points... [1.875s] Computing alignments... [82.67s] Deallocating buffers... [0.05s] Loading trace points... [0.068s] Sorting trace points... [2.158s] Computing alignments... [82.908s] Deallocating buffers... [0.052s] Loading trace points... [0.06s] Sorting trace points... [2.596s] Computing alignments... [85.654s] Deallocating buffers... [0.054s] Loading trace points... [0.001s] Sorting trace points... [2.002s] Computing alignments... [85.302s] Deallocating buffers... [0.049s] Loading trace points... [0.082s] Sorting trace points... [2.62s] Computing alignments... [84.266s] Deallocating buffers... [0.054s] Loading trace points... [0.065s] Sorting trace points... [2.702s] Computing alignments... [85.074s] Deallocating buffers... [0.046s] Loading trace points... [0.061s] Sorting trace points... [2.773s] Computing alignments... [86.718s] Deallocating buffers... [0.048s] Loading trace points... [0.053s] Sorting trace points... [2.522s] Computing alignments... [79.872s] Deallocating buffers... [0.046s] Loading trace points... [0.713s] Sorting trace points... [2.774s] Computing alignments... [81.424s] Deallocating buffers... [0.053s] Loading trace points... [0.053s] Sorting trace points... [2.145s] Computing alignments... [81.621s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [2.527s] Computing alignments... [81.18s] Deallocating buffers... [0.034s] Loading trace points... [0s] [1387.73s] Deallocating reference... [0.059s] Loading reference sequences... [25.284s] Masking reference... [25.866s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [25.776s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.821s] Building query seed array... [3.303s] Computing hash join... [4.422s] Masking low complexity seeds... [0.225s] Searching alignments... [548.051s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.731s] Building query seed array... [3.648s] Computing hash join... [4.363s] Masking low complexity seeds... [0.218s] Searching alignments... [236.778s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.946s] Building query seed array... [3.756s] Computing hash join... [4.342s] Masking low complexity seeds... [0.215s] Searching alignments... [175.954s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.097s] Building query seed array... [3.114s] Computing hash join... [4.333s] Masking low complexity seeds... [0.222s] Searching alignments... [173.715s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.417s] Building query seed array... [2.961s] Computing hash join... [4.173s] Masking low complexity seeds... [0.205s] Searching alignments... [261.001s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.063s] Building query seed array... [3.415s] Computing hash join... [4.21s] Masking low complexity seeds... [0.204s] Searching alignments... [204.053s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.036s] Building query seed array... [3.516s] Computing hash join... [4.234s] Masking low complexity seeds... [0.206s] Searching alignments... [146.161s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.134s] Building query seed array... [2.976s] Computing hash join... [4.209s] Masking low complexity seeds... [0.212s] Searching alignments... [157.797s] Deallocating memory... [0s] Deallocating buffers... [0.126s] Clearing query masking... [2.108s] Opening temporary output file... [0.014s] Computing alignments... Loading trace points... [11.549s] Sorting trace points... [2.221s] Computing alignments... [66.121s] Deallocating buffers... [0.04s] Loading trace points... [0.068s] Sorting trace points... [1.602s] Computing alignments... [64.96s] Deallocating buffers... [0.041s] Loading trace points... [0.623s] Sorting trace points... [2.128s] Computing alignments... [64.001s] Deallocating buffers... [0.047s] Loading trace points... [0.093s] Sorting trace points... [1.894s] Computing alignments... [66.852s] Deallocating buffers... [0.033s] Loading trace points... [0.069s] Sorting trace points... [1.957s] Computing alignments... [62.716s] Deallocating buffers... [0.043s] Loading trace points... [0.075s] Sorting trace points... [2.071s] Computing alignments... [64.46s] Deallocating buffers... [0.037s] Loading trace points... [0.056s] Sorting trace points... [1.663s] Computing alignments... [63.896s] Deallocating buffers... [0.043s] Loading trace points... [0.049s] Sorting trace points... [2.21s] Computing alignments... [67.173s] Deallocating buffers... [0.046s] Loading trace points... [0.002s] Sorting trace points... [2.147s] Computing alignments... [65.954s] Deallocating buffers... [0.038s] Loading trace points... [0.063s] Sorting trace points... [2.156s] Computing alignments... [65.622s] Deallocating buffers... [0.038s] Loading trace points... [0.774s] Sorting trace points... [2.148s] Computing alignments... [65.697s] Deallocating buffers... [0.038s] Loading trace points... [0.074s] Sorting trace points... [1.649s] Computing alignments... [67.833s] Deallocating buffers... [0.043s] Loading trace points... [0.07s] Sorting trace points... [1.529s] Computing alignments... [62.444s] Deallocating buffers... [0.039s] Loading trace points... [0.06s] Sorting trace points... [1.661s] Computing alignments... [64.223s] Deallocating buffers... [0.039s] Loading trace points... [0.053s] Sorting trace points... [1.552s] Computing alignments... [63.535s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.646s] Computing alignments... [63.318s] Deallocating buffers... [0.04s] Loading trace points... [0s] [1083.48s] Deallocating reference... [0.063s] Loading reference sequences... [0.088s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [5026.8s] [5026.8s] Deallocating queries... [0.082s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.251s] [4.091s] Closing the database... [0s] Cleaning up... [0s] Total time = 61278.2s Reported 5650643563 pairwise alignments, 5650643563 HSPs. 7159883 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-11.trimmed.R2.fastq.gz complete: CH07-11.trimmed.R2.blastx.meganized.daa Now MEGANizing CH07-11.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-11.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (208.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8,389.8s) Total reads: 7,159,883 With hits: 7,159,883 Alignments: 3,948,938,853 Assig. Taxonomy: 3,209,768 Assig. SEED: 106,111 Assig. EGGNOG: 38,773 Assig. GTDB: 259,433 Assig. EC: 472,013 Assig. INTERPRO2GO: 1,511,242 MinSupport set to: 3579 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 6,151 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (17.6s) Min-supp. changes: 4,424 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.1s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 173 Class. SEED: 514 Class. EGGNOG: 1,710 Class. GTDB: 52 Class. EC: 2,412 Class. INTERPRO2GO: 8,832 Total time: 8,634s Peak memory: 50 of 195.3G MEGANization of CH07-11.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-24.trimmed.R1.fastq.gz... acdb6f8ed171290706d64a98069485ca /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-24.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-24.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.347s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.757s] Opening the output file... [0s] Loading query sequences... [95.027s] Masking queries... [25.135s] Algorithm: Double-indexed Building query histograms... [25.116s] Loading reference sequences... [29.368s] Masking reference... [32.182s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.553s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.443s] Building query seed array... [2.362s] Computing hash join... [5.148s] Masking low complexity seeds... [0.199s] Searching alignments... [2180.85s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.303s] Building query seed array... [2.732s] Computing hash join... [4.992s] Masking low complexity seeds... [0.202s] Searching alignments... [950.14s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.485s] Building query seed array... [2.814s] Computing hash join... [4.95s] Masking low complexity seeds... [0.199s] Searching alignments... [685.172s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.086s] Building query seed array... [2.291s] Computing hash join... [4.924s] Masking low complexity seeds... [0.203s] Searching alignments... [712.395s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.877s] Building query seed array... [2.143s] Computing hash join... [4.818s] Masking low complexity seeds... [0.189s] Searching alignments... [1031.63s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.318s] Building query seed array... [2.441s] Computing hash join... [4.825s] Masking low complexity seeds... [0.186s] Searching alignments... [784.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.955s] Building query seed array... [2.573s] Computing hash join... [4.85s] Masking low complexity seeds... [0.183s] Searching alignments... [551.695s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.214s] Building query seed array... [2.198s] Computing hash join... [4.855s] Masking low complexity seeds... [0.186s] Searching alignments... [594.89s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.522s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.998s] Sorting trace points... [7.612s] Computing alignments... [232.379s] Deallocating buffers... [0.117s] Loading trace points... Warning: resident size (112332024212) exceeds memory limit. [0.123s] Sorting trace points... [6.34s] Computing alignments... [236.505s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (113665303367) exceeds memory limit. [0.085s] Sorting trace points... [6.812s] Computing alignments... [240.078s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (116320004342) exceeds memory limit. [0.074s] Sorting trace points... [8.164s] Computing alignments... [248.762s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (115880098772) exceeds memory limit. [0.378s] Sorting trace points... [7.827s] Computing alignments... [239.582s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (113670329402) exceeds memory limit. [0.101s] Sorting trace points... [5.98s] Computing alignments... [238.146s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (114275530682) exceeds memory limit. [0.064s] Sorting trace points... [7.761s] Computing alignments... [242.601s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (116134821242) exceeds memory limit. [0.07s] Sorting trace points... [8.145s] Computing alignments... [249.342s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (115542035597) exceeds memory limit. [0.077s] Sorting trace points... [6.039s] Computing alignments... [239.278s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114350320337) exceeds memory limit. [0.095s] Sorting trace points... [7.401s] Computing alignments... [243.165s] Deallocating buffers... [0.123s] Loading trace points... Warning: resident size (115551191642) exceeds memory limit. [0.153s] Sorting trace points... [6.648s] Computing alignments... [245.596s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (117263003402) exceeds memory limit. [0.067s] Sorting trace points... [8.431s] Computing alignments... [252.262s] Deallocating buffers... [0.156s] Loading trace points... Warning: resident size (116290604267) exceeds memory limit. [0.044s] Sorting trace points... [5.874s] Computing alignments... [240.439s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114669975332) exceeds memory limit. [0.045s] Sorting trace points... [6.291s] Computing alignments... [241.759s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (115266416567) exceeds memory limit. [0.052s] Sorting trace points... [7.489s] Computing alignments... [242.451s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (116676092522) exceeds memory limit. [0s] Sorting trace points... [7.855s] Computing alignments... [246.116s] Deallocating buffers... [0.158s] Loading trace points... [0s] [4034.82s] Deallocating reference... [0.067s] Loading reference sequences... [29.715s] Masking reference... [30.871s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [33.159s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.696s] Building query seed array... [2.354s] Computing hash join... [5.028s] Masking low complexity seeds... [0.196s] Searching alignments... [2127.75s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.295s] Building query seed array... [2.792s] Computing hash join... [5.035s] Masking low complexity seeds... [0.197s] Searching alignments... [935.181s] Deallocating memory... [0.028s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.261s] Building query seed array... [2.822s] Computing hash join... [5.031s] Masking low complexity seeds... [0.199s] Searching alignments... [680.002s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.157s] Building query seed array... [2.42s] Computing hash join... [4.949s] Masking low complexity seeds... [0.203s] Searching alignments... [700.093s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.333s] Building query seed array... [2.15s] Computing hash join... [4.829s] Masking low complexity seeds... [0.187s] Searching alignments... [1029.98s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.524s] Building query seed array... [2.415s] Computing hash join... [4.771s] Masking low complexity seeds... [0.19s] Searching alignments... [783.569s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.715s] Building query seed array... [2.532s] Computing hash join... [4.812s] Masking low complexity seeds... [0.186s] Searching alignments... [551.635s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.024s] Building query seed array... [2.209s] Computing hash join... [4.872s] Masking low complexity seeds... [0.187s] Searching alignments... [569.582s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.436s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.861s] Sorting trace points... [7.846s] Computing alignments... [244.044s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (111837802652) exceeds memory limit. [0.095s] Sorting trace points... [7.75s] Computing alignments... [246.631s] Deallocating buffers... [0.17s] Loading trace points... Warning: resident size (113164803407) exceeds memory limit. [0.067s] Sorting trace points... [5.928s] Computing alignments... [252.934s] Deallocating buffers... [0.163s] Loading trace points... Warning: resident size (115807500122) exceeds memory limit. [0.151s] Sorting trace points... [6.487s] Computing alignments... [260.538s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (115367163917) exceeds memory limit. [0.04s] Sorting trace points... [5.555s] Computing alignments... [250.744s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (113166652517) exceeds memory limit. [0.001s] Sorting trace points... [6.368s] Computing alignments... [249.866s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (113773077992) exceeds memory limit. [0.056s] Sorting trace points... [5.66s] Computing alignments... [251.454s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (115625770412) exceeds memory limit. [0.08s] Sorting trace points... [6.581s] Computing alignments... [262.462s] Deallocating buffers... [0.155s] Loading trace points... Warning: resident size (115033484957) exceeds memory limit. [0.091s] Sorting trace points... [6.454s] Computing alignments... [250.594s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (113843671487) exceeds memory limit. [0.12s] Sorting trace points... [7.107s] Computing alignments... [253.634s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115039530497) exceeds memory limit. [0.24s] Sorting trace points... [5.938s] Computing alignments... [258.902s] Deallocating buffers... [0.173s] Loading trace points... Warning: resident size (116746740257) exceeds memory limit. [0.097s] Sorting trace points... [6.75s] Computing alignments... [263.388s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (115781228267) exceeds memory limit. [1.129s] Sorting trace points... [6.761s] Computing alignments... [252.868s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (114167094662) exceeds memory limit. [0.08s] Sorting trace points... [6.488s] Computing alignments... [251.633s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (114760956677) exceeds memory limit. [0.073s] Sorting trace points... [6.562s] Computing alignments... [251.406s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (116166368072) exceeds memory limit. [0s] Sorting trace points... [7.031s] Computing alignments... [257.413s] Deallocating buffers... [0.158s] Loading trace points... [0s] [4206.51s] Deallocating reference... [0.074s] Loading reference sequences... [29.494s] Masking reference... [30.917s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.587s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.24s] Building query seed array... [2.369s] Computing hash join... [5.078s] Masking low complexity seeds... [0.198s] Searching alignments... [2166.21s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.517s] Building query seed array... [2.666s] Computing hash join... [4.954s] Masking low complexity seeds... [0.199s] Searching alignments... [956.393s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.493s] Building query seed array... [2.801s] Computing hash join... [4.896s] Masking low complexity seeds... [0.196s] Searching alignments... [688.122s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.788s] Building query seed array... [2.34s] Computing hash join... [4.912s] Masking low complexity seeds... [0.205s] Searching alignments... [701.597s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.225s] Building query seed array... [2.106s] Computing hash join... [4.822s] Masking low complexity seeds... [0.192s] Searching alignments... [1012.99s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.034s] Building query seed array... [2.399s] Computing hash join... [4.745s] Masking low complexity seeds... [0.189s] Searching alignments... [777.737s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.352s] Building query seed array... [2.582s] Computing hash join... [4.847s] Masking low complexity seeds... [0.19s] Searching alignments... [557.236s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.726s] Building query seed array... [2.183s] Computing hash join... [4.764s] Masking low complexity seeds... [0.184s] Searching alignments... [575.435s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.575s] Opening temporary output file... [0.018s] Computing alignments... Loading trace points... [37.546s] Sorting trace points... [7.384s] Computing alignments... [241.866s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (111592022170) exceeds memory limit. [0.072s] Sorting trace points... [7.442s] Computing alignments... [246.953s] Deallocating buffers... [0.163s] Loading trace points... Warning: resident size (112913279845) exceeds memory limit. [0.072s] Sorting trace points... [5.825s] Computing alignments... [251.084s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (115544176090) exceeds memory limit. [0.072s] Sorting trace points... [7.51s] Computing alignments... [257.551s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (115109575270) exceeds memory limit. [0.045s] Sorting trace points... [7.515s] Computing alignments... [248.466s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (112917519325) exceeds memory limit. [0.049s] Sorting trace points... [5.461s] Computing alignments... [248.532s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (113520276280) exceeds memory limit. [0.062s] Sorting trace points... [6.578s] Computing alignments... [249.257s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115366764400) exceeds memory limit. [0.081s] Sorting trace points... [6.765s] Computing alignments... [258.898s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (114778343455) exceeds memory limit. [0.089s] Sorting trace points... [7.293s] Computing alignments... [248.018s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (113597653300) exceeds memory limit. [0.066s] Sorting trace points... [6.539s] Computing alignments... [252.244s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114785855665) exceeds memory limit. [0.116s] Sorting trace points... [5.797s] Computing alignments... [257.911s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (116476971250) exceeds memory limit. [0.063s] Sorting trace points... [6.867s] Computing alignments... [261.233s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115512345325) exceeds memory limit. [0.053s] Sorting trace points... [6.129s] Computing alignments... [249.087s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (113905593040) exceeds memory limit. [0.149s] Sorting trace points... [8.18s] Computing alignments... [251.627s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114495748540) exceeds memory limit. [0.067s] Sorting trace points... [6.143s] Computing alignments... [249.923s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115898016595) exceeds memory limit. [0s] Sorting trace points... [7.791s] Computing alignments... [255.38s] Deallocating buffers... [0.144s] Loading trace points... [0s] [4178.26s] Deallocating reference... [0.07s] Loading reference sequences... [29.661s] Masking reference... [30.862s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.293s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.195s] Building query seed array... [2.416s] Computing hash join... [4.961s] Masking low complexity seeds... [0.194s] Searching alignments... [2176.85s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.603s] Building query seed array... [2.761s] Computing hash join... [4.935s] Masking low complexity seeds... [0.193s] Searching alignments... [959.665s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.503s] Building query seed array... [2.815s] Computing hash join... [4.968s] Masking low complexity seeds... [0.208s] Searching alignments... [688.046s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.965s] Building query seed array... [2.297s] Computing hash join... [4.887s] Masking low complexity seeds... [0.2s] Searching alignments... [704.021s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.366s] Building query seed array... [2.125s] Computing hash join... [4.833s] Masking low complexity seeds... [0.185s] Searching alignments... [1029.75s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.274s] Building query seed array... [2.367s] Computing hash join... [4.832s] Masking low complexity seeds... [0.187s] Searching alignments... [799.981s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.368s] Building query seed array... [2.548s] Computing hash join... [4.884s] Masking low complexity seeds... [0.187s] Searching alignments... [556.175s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.166s] Building query seed array... [2.153s] Computing hash join... [4.819s] Masking low complexity seeds... [0.182s] Searching alignments... [577.785s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.496s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.924s] Sorting trace points... [7.867s] Computing alignments... [236.546s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (112219085759) exceeds memory limit. [0.068s] Sorting trace points... [7.741s] Computing alignments... [239.244s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (113550053984) exceeds memory limit. [0.085s] Sorting trace points... [6.174s] Computing alignments... [244.638s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (116199968759) exceeds memory limit. [0.051s] Sorting trace points... [7.481s] Computing alignments... [250.596s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (115761745829) exceeds memory limit. [0.07s] Sorting trace points... [7.563s] Computing alignments... [241.823s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (113554555949) exceeds memory limit. [0.069s] Sorting trace points... [7.54s] Computing alignments... [241.182s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (114161749259) exceeds memory limit. [0.062s] Sorting trace points... [7.926s] Computing alignments... [243.379s] Deallocating buffers... [0.177s] Loading trace points... Warning: resident size (116020856939) exceeds memory limit. [0.053s] Sorting trace points... [5.974s] Computing alignments... [253.298s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115427771684) exceeds memory limit. [0.048s] Sorting trace points... [6.281s] Computing alignments... [242.104s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (114236647649) exceeds memory limit. [0.098s] Sorting trace points... [7.855s] Computing alignments... [245.656s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (115434804209) exceeds memory limit. [0.056s] Sorting trace points... [6.449s] Computing alignments... [250.626s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (117141088529) exceeds memory limit. [0.065s] Sorting trace points... [6.94s] Computing alignments... [254.331s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (116168679149) exceeds memory limit. [0.086s] Sorting trace points... [5.886s] Computing alignments... [243.626s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114551557739) exceeds memory limit. [0.002s] Sorting trace points... [6.883s] Computing alignments... [243.112s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (115146961544) exceeds memory limit. [0.083s] Sorting trace points... [6.14s] Computing alignments... [245.111s] Deallocating buffers... [0.164s] Loading trace points... Warning: resident size (116555723939) exceeds memory limit. [0s] Sorting trace points... [7.942s] Computing alignments... [247.813s] Deallocating buffers... [0.135s] Loading trace points... [0s] [4076.95s] Deallocating reference... [0.085s] Loading reference sequences... [243.59s] Masking reference... [31.08s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.151s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.458s] Building query seed array... [2.412s] Computing hash join... [4.98s] Masking low complexity seeds... [0.198s] Searching alignments... [2143.03s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.324s] Building query seed array... [2.719s] Computing hash join... [5.043s] Masking low complexity seeds... [0.205s] Searching alignments... [940.368s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.319s] Building query seed array... [2.856s] Computing hash join... [5.038s] Masking low complexity seeds... [0.2s] Searching alignments... [678.452s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.331s] Building query seed array... [2.228s] Computing hash join... [5.016s] Masking low complexity seeds... [0.208s] Searching alignments... [698.987s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.231s] Building query seed array... [2.206s] Computing hash join... [4.751s] Masking low complexity seeds... [0.189s] Searching alignments... [1003.18s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.171s] Building query seed array... [2.445s] Computing hash join... [4.843s] Masking low complexity seeds... [0.187s] Searching alignments... [783.442s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13s] Building query seed array... [2.538s] Computing hash join... [4.785s] Masking low complexity seeds... [0.188s] Searching alignments... [552.233s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.073s] Building query seed array... [2.175s] Computing hash join... [4.864s] Masking low complexity seeds... [0.191s] Searching alignments... [580.015s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.484s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.782s] Sorting trace points... [7.898s] Computing alignments... [251.285s] Deallocating buffers... [0.158s] Loading trace points... Warning: resident size (112105228140) exceeds memory limit. [0.1s] Sorting trace points... [7.494s] Computing alignments... [257.706s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (113437563585) exceeds memory limit. [0.071s] Sorting trace points... [7.173s] Computing alignments... [259.96s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (116088722835) exceeds memory limit. [0.08s] Sorting trace points... [7.337s] Computing alignments... [269.561s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (115648422975) exceeds memory limit. [0.002s] Sorting trace points... [6.992s] Computing alignments... [260.18s] Deallocating buffers... [0.169s] Loading trace points... Warning: resident size (113442325530) exceeds memory limit. [0.105s] Sorting trace points... [7.026s] Computing alignments... [257.371s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (114050019780) exceeds memory limit. [0.939s] Sorting trace points... [7.708s] Computing alignments... [259.413s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (115907657085) exceeds memory limit. [0.083s] Sorting trace points... [6.293s] Computing alignments... [270.722s] Deallocating buffers... [0.162s] Loading trace points... Warning: resident size (115313883885) exceeds memory limit. [0.122s] Sorting trace points... [5.569s] Computing alignments... [258.601s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (114122761395) exceeds memory limit. [0.06s] Sorting trace points... [5.616s] Computing alignments... [263.024s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (115322287650) exceeds memory limit. [0.565s] Sorting trace points... [8.043s] Computing alignments... [270.571s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (117031148250) exceeds memory limit. [0.056s] Sorting trace points... [5.945s] Computing alignments... [271.066s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (116060713575) exceeds memory limit. [0.069s] Sorting trace points... [7.528s] Computing alignments... [260.342s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (114442952880) exceeds memory limit. [0.066s] Sorting trace points... [5.716s] Computing alignments... [263.695s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (115038172995) exceeds memory limit. [0.063s] Sorting trace points... [7.8s] Computing alignments... [261.151s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (116448320640) exceeds memory limit. [0s] Sorting trace points... [5.759s] Computing alignments... [266.077s] Deallocating buffers... [0.159s] Loading trace points... [0s] [4353.3s] Deallocating reference... [0.069s] Loading reference sequences... [246.184s] Masking reference... [31.515s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.744s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.47s] Building query seed array... [2.323s] Computing hash join... [5.075s] Masking low complexity seeds... [0.199s] Searching alignments... [2149.55s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.511s] Building query seed array... [2.738s] Computing hash join... [5.027s] Masking low complexity seeds... [0.201s] Searching alignments... [938.934s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.687s] Building query seed array... [2.844s] Computing hash join... [5.017s] Masking low complexity seeds... [0.203s] Searching alignments... [688.838s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.861s] Building query seed array... [2.293s] Computing hash join... [4.905s] Masking low complexity seeds... [0.193s] Searching alignments... [706.297s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.202s] Building query seed array... [2.11s] Computing hash join... [4.84s] Masking low complexity seeds... [0.189s] Searching alignments... [1048.89s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.296s] Building query seed array... [2.476s] Computing hash join... [4.852s] Masking low complexity seeds... [0.188s] Searching alignments... [782.73s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.422s] Building query seed array... [2.577s] Computing hash join... [4.74s] Masking low complexity seeds... [0.178s] Searching alignments... [551.643s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.795s] Building query seed array... [2.159s] Computing hash join... [4.734s] Masking low complexity seeds... [0.187s] Searching alignments... [576.251s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.519s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.925s] Sorting trace points... [7.231s] Computing alignments... [241.656s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (111670805419) exceeds memory limit. [0.06s] Sorting trace points... [7.695s] Computing alignments... [247.228s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (112995374239) exceeds memory limit. [0.091s] Sorting trace points... [6.689s] Computing alignments... [250.31s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (115631358064) exceeds memory limit. [0.115s] Sorting trace points... [5.906s] Computing alignments... [259.374s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (115193770039) exceeds memory limit. [0.054s] Sorting trace points... [7.631s] Computing alignments... [248.428s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (112999018714) exceeds memory limit. [0.056s] Sorting trace points... [7.009s] Computing alignments... [247.257s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (113602016599) exceeds memory limit. [0.056s] Sorting trace points... [5.536s] Computing alignments... [250.553s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (115448275654) exceeds memory limit. [0.063s] Sorting trace points... [6.911s] Computing alignments... [259.539s] Deallocating buffers... [0.155s] Loading trace points... Warning: resident size (114859200049) exceeds memory limit. [0.98s] Sorting trace points... [6.13s] Computing alignments... [250.233s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (113673380434) exceeds memory limit. [0.058s] Sorting trace points... [7.442s] Computing alignments... [253.559s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114865083169) exceeds memory limit. [0.043s] Sorting trace points... [6.701s] Computing alignments... [259.135s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (116566633879) exceeds memory limit. [0.089s] Sorting trace points... [8.308s] Computing alignments... [262.259s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (115603444504) exceeds memory limit. [0.063s] Sorting trace points... [5.681s] Computing alignments... [248.994s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (113994383719) exceeds memory limit. [0.002s] Sorting trace points... [6.89s] Computing alignments... [253.197s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (114586093654) exceeds memory limit. [0.066s] Sorting trace points... [7.372s] Computing alignments... [252.327s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (115985368969) exceeds memory limit. [0s] Sorting trace points... [5.607s] Computing alignments... [256.766s] Deallocating buffers... [0.152s] Loading trace points... [0s] [4191.6s] Deallocating reference... [0.065s] Loading reference sequences... [31.693s] Masking reference... [30.883s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.482s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.67s] Building query seed array... [2.403s] Computing hash join... [4.993s] Masking low complexity seeds... [0.198s] Searching alignments... [2144.11s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.627s] Building query seed array... [2.708s] Computing hash join... [5.02s] Masking low complexity seeds... [0.204s] Searching alignments... [958.885s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.409s] Building query seed array... [2.864s] Computing hash join... [5.09s] Masking low complexity seeds... [0.203s] Searching alignments... [678.777s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.121s] Building query seed array... [2.338s] Computing hash join... [4.991s] Masking low complexity seeds... [0.198s] Searching alignments... [699.346s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.211s] Building query seed array... [2.148s] Computing hash join... [4.875s] Masking low complexity seeds... [0.189s] Searching alignments... [1041.47s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.04s] Building query seed array... [2.422s] Computing hash join... [4.775s] Masking low complexity seeds... [0.183s] Searching alignments... [788.146s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.874s] Building query seed array... [2.577s] Computing hash join... [4.774s] Masking low complexity seeds... [0.192s] Searching alignments... [555.102s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.072s] Building query seed array... [2.121s] Computing hash join... [4.783s] Masking low complexity seeds... [0.187s] Searching alignments... [573.391s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.55s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [37.66s] Sorting trace points... [7.932s] Computing alignments... [245.47s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (111699489810) exceeds memory limit. [0.056s] Sorting trace points... [7.451s] Computing alignments... [250.886s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (113021982405) exceeds memory limit. [0s] Sorting trace points... [6.103s] Computing alignments... [253.417s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (115657602015) exceeds memory limit. [0.075s] Sorting trace points... [5.964s] Computing alignments... [262.327s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115221552150) exceeds memory limit. [0.082s] Sorting trace points... [6.208s] Computing alignments... [250.573s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (113026675515) exceeds memory limit. [0.049s] Sorting trace points... [6.514s] Computing alignments... [249.941s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (113628929010) exceeds memory limit. [0.057s] Sorting trace points... [5.841s] Computing alignments... [254.242s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (115476768945) exceeds memory limit. [0.049s] Sorting trace points... [5.85s] Computing alignments... [264.47s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114889001025) exceeds memory limit. [0.075s] Sorting trace points... [5.67s] Computing alignments... [251.324s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (113705375400) exceeds memory limit. [0.078s] Sorting trace points... [7.963s] Computing alignments... [256.857s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (114896295900) exceeds memory limit. [0.06s] Sorting trace points... [6.947s] Computing alignments... [262.522s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (116593962300) exceeds memory limit. [0.092s] Sorting trace points... [7.194s] Computing alignments... [265.707s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (115629181320) exceeds memory limit. [0.072s] Sorting trace points... [7.506s] Computing alignments... [252.101s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (114019150065) exceeds memory limit. [0.04s] Sorting trace points... [6.87s] Computing alignments... [258.196s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (114610434255) exceeds memory limit. [0.058s] Sorting trace points... [7.513s] Computing alignments... [254.986s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (116013363600) exceeds memory limit. [0s] Sorting trace points... [5.582s] Computing alignments... [259.462s] Deallocating buffers... [0.146s] Loading trace points... [0s] [4240.43s] Deallocating reference... [0.067s] Loading reference sequences... [29.617s] Masking reference... [30.91s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.771s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.559s] Building query seed array... [2.435s] Computing hash join... [4.995s] Masking low complexity seeds... [0.193s] Searching alignments... [2153.17s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.492s] Building query seed array... [2.663s] Computing hash join... [5.029s] Masking low complexity seeds... [0.21s] Searching alignments... [955.038s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.689s] Building query seed array... [2.884s] Computing hash join... [4.9s] Masking low complexity seeds... [0.206s] Searching alignments... [676.041s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.989s] Building query seed array... [2.361s] Computing hash join... [5.036s] Masking low complexity seeds... [0.206s] Searching alignments... [712.697s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.889s] Building query seed array... [2.179s] Computing hash join... [4.841s] Masking low complexity seeds... [0.186s] Searching alignments... [1026.64s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.442s] Building query seed array... [2.442s] Computing hash join... [4.766s] Masking low complexity seeds... [0.182s] Searching alignments... [788.886s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.8s] Building query seed array... [2.516s] Computing hash join... [4.835s] Masking low complexity seeds... [0.195s] Searching alignments... [555.156s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.222s] Building query seed array... [2.167s] Computing hash join... [4.843s] Masking low complexity seeds... [0.185s] Searching alignments... [569.023s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.506s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.504s] Sorting trace points... [7.756s] Computing alignments... [232.984s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (111368491056) exceeds memory limit. [0.048s] Sorting trace points... [6.813s] Computing alignments... [238.013s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (112682918331) exceeds memory limit. [0.059s] Sorting trace points... [5.52s] Computing alignments... [243.077s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (115303832181) exceeds memory limit. [0.058s] Sorting trace points... [7.99s] Computing alignments... [250.166s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (114871211091) exceeds memory limit. [0.199s] Sorting trace points... [5.521s] Computing alignments... [240.087s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (112686876066) exceeds memory limit. [0.068s] Sorting trace points... [6.178s] Computing alignments... [238.708s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (113288099946) exceeds memory limit. [0.046s] Sorting trace points... [6.338s] Computing alignments... [242.33s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (115127813256) exceeds memory limit. [0.049s] Sorting trace points... [7.863s] Computing alignments... [251.019s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (114540831201) exceeds memory limit. [0.044s] Sorting trace points... [6.279s] Computing alignments... [239.742s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (113364567066) exceeds memory limit. [0.058s] Sorting trace points... [6.973s] Computing alignments... [244.043s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (114548851011) exceeds memory limit. [0.069s] Sorting trace points... [5.991s] Computing alignments... [248.569s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (116234207331) exceeds memory limit. [0.084s] Sorting trace points... [8.261s] Computing alignments... [252.042s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (115272971031) exceeds memory limit. [0.072s] Sorting trace points... [6.663s] Computing alignments... [241.865s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (113672496036) exceeds memory limit. [0.077s] Sorting trace points... [5.94s] Computing alignments... [242.186s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (114258605781) exceeds memory limit. [0.079s] Sorting trace points... [8.294s] Computing alignments... [242.061s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (115654015356) exceeds memory limit. [0s] Sorting trace points... [6.026s] Computing alignments... [245.331s] Deallocating buffers... [0.173s] Loading trace points... [0s] [4041.5s] Deallocating reference... [0.072s] Loading reference sequences... [29.872s] Masking reference... [30.871s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.402s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.175s] Building query seed array... [2.333s] Computing hash join... [5.028s] Masking low complexity seeds... [0.197s] Searching alignments... [2181.81s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.319s] Building query seed array... [2.73s] Computing hash join... [4.99s] Masking low complexity seeds... [0.206s] Searching alignments... [942.578s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.328s] Building query seed array... [2.822s] Computing hash join... [4.923s] Masking low complexity seeds... [0.21s] Searching alignments... [689.03s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.042s] Building query seed array... [2.277s] Computing hash join... [4.954s] Masking low complexity seeds... [0.2s] Searching alignments... [706.416s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.049s] Building query seed array... [2.165s] Computing hash join... [4.869s] Masking low complexity seeds... [0.192s] Searching alignments... [1038.76s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.979s] Building query seed array... [2.407s] Computing hash join... [4.808s] Masking low complexity seeds... [0.183s] Searching alignments... [782.025s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.974s] Building query seed array... [2.554s] Computing hash join... [4.825s] Masking low complexity seeds... [0.188s] Searching alignments... [558.78s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.96s] Building query seed array... [2.134s] Computing hash join... [4.833s] Masking low complexity seeds... [0.19s] Searching alignments... [578.942s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.566s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.028s] Sorting trace points... [7.541s] Computing alignments... [236.776s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (111838571679) exceeds memory limit. [0.091s] Sorting trace points... [7.754s] Computing alignments... [241.491s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (113164248819) exceeds memory limit. [0.089s] Sorting trace points... [6.02s] Computing alignments... [245.511s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (115801248864) exceeds memory limit. [0.304s] Sorting trace points... [7.033s] Computing alignments... [253.881s] Deallocating buffers... [0.169s] Loading trace points... Warning: resident size (115366264464) exceeds memory limit. [0.002s] Sorting trace points... [7.772s] Computing alignments... [244.334s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (113169409794) exceeds memory limit. [0s] Sorting trace points... [5.618s] Computing alignments... [243.454s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (113772786129) exceeds memory limit. [0.063s] Sorting trace points... [5.775s] Computing alignments... [245.163s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115621924629) exceeds memory limit. [0.065s] Sorting trace points... [5.78s] Computing alignments... [255.007s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (115030448589) exceeds memory limit. [0.071s] Sorting trace points... [6.173s] Computing alignments... [243.206s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (113849105694) exceeds memory limit. [0.059s] Sorting trace points... [8.073s] Computing alignments... [248.336s] Deallocating buffers... [0.161s] Loading trace points... Warning: resident size (115042397724) exceeds memory limit. [0.073s] Sorting trace points... [5.718s] Computing alignments... [253.134s] Deallocating buffers... [0.156s] Loading trace points... Warning: resident size (116736772374) exceeds memory limit. [0.122s] Sorting trace points... [6.423s] Computing alignments... [255.44s] Deallocating buffers... [0.157s] Loading trace points... Warning: resident size (115769008584) exceeds memory limit. [0.054s] Sorting trace points... [6.087s] Computing alignments... [245.872s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (114160424904) exceeds memory limit. [0.06s] Sorting trace points... [7.992s] Computing alignments... [244.865s] Deallocating buffers... [0.123s] Loading trace points... Warning: resident size (114750817494) exceeds memory limit. [0.048s] Sorting trace points... [6.636s] Computing alignments... [245.461s] Deallocating buffers... [0.113s] Loading trace points... Warning: resident size (116153462589) exceeds memory limit. [0s] Sorting trace points... [5.602s] Computing alignments... [250.062s] Deallocating buffers... [0.149s] Loading trace points... [0s] [4099.5s] Deallocating reference... [0.067s] Loading reference sequences... [34.073s] Masking reference... [31.242s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.04s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.334s] Building query seed array... [2.391s] Computing hash join... [5.033s] Masking low complexity seeds... [0.208s] Searching alignments... [2143.49s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.464s] Building query seed array... [2.631s] Computing hash join... [4.979s] Masking low complexity seeds... [0.205s] Searching alignments... [940.4s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.11s] Building query seed array... [2.812s] Computing hash join... [4.905s] Masking low complexity seeds... [0.197s] Searching alignments... [671.835s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.174s] Building query seed array... [2.258s] Computing hash join... [5.04s] Masking low complexity seeds... [0.198s] Searching alignments... [701.69s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.1s] Building query seed array... [2.152s] Computing hash join... [4.811s] Masking low complexity seeds... [0.19s] Searching alignments... [1004s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.414s] Building query seed array... [2.443s] Computing hash join... [4.8s] Masking low complexity seeds... [0.189s] Searching alignments... [792.092s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.893s] Building query seed array... [2.649s] Computing hash join... [4.933s] Masking low complexity seeds... [0.19s] Searching alignments... [554.048s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.923s] Building query seed array... [2.111s] Computing hash join... [4.814s] Masking low complexity seeds... [0.188s] Searching alignments... [574.705s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.562s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [38.224s] Sorting trace points... [7.336s] Computing alignments... [213.159s] Deallocating buffers... [0.097s] Loading trace points... Warning: resident size (111642101741) exceeds memory limit. [0.05s] Sorting trace points... [7.675s] Computing alignments... [216.556s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (112965476426) exceeds memory limit. [0.072s] Sorting trace points... [7.117s] Computing alignments... [220.196s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (115597530941) exceeds memory limit. [0.001s] Sorting trace points... [8.237s] Computing alignments... [228.802s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (115159991861) exceeds memory limit. [0.065s] Sorting trace points... [5.811s] Computing alignments... [218.362s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (112965831176) exceeds memory limit. [0.039s] Sorting trace points... [5.681s] Computing alignments... [218.049s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (113570103581) exceeds memory limit. [0.041s] Sorting trace points... [7.211s] Computing alignments... [219.95s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (115418759756) exceeds memory limit. [0.045s] Sorting trace points... [6.32s] Computing alignments... [228.835s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (114828971456) exceeds memory limit. [0s] Sorting trace points... [5.531s] Computing alignments... [218.304s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (113645274266) exceeds memory limit. [0.053s] Sorting trace points... [5.697s] Computing alignments... [220.757s] Deallocating buffers... [0.112s] Loading trace points... Warning: resident size (114835966061) exceeds memory limit. [0.165s] Sorting trace points... [5.891s] Computing alignments... [224.954s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (116532049946) exceeds memory limit. [0.08s] Sorting trace points... [8.433s] Computing alignments... [229.677s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (115567037846) exceeds memory limit. [0.079s] Sorting trace points... [7.465s] Computing alignments... [219.206s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (113960057876) exceeds memory limit. [0.067s] Sorting trace points... [5.861s] Computing alignments... [220.562s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (114550966046) exceeds memory limit. [0.055s] Sorting trace points... [5.662s] Computing alignments... [222.174s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (115952170931) exceeds memory limit. [0s] Sorting trace points... [8.009s] Computing alignments... [224.344s] Deallocating buffers... [0.151s] Loading trace points... [0s] [3693.09s] Deallocating reference... [0.059s] Loading reference sequences... [29.558s] Masking reference... [30.856s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.498s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.186s] Building query seed array... [2.417s] Computing hash join... [5.024s] Masking low complexity seeds... [0.204s] Searching alignments... [2166.01s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.401s] Building query seed array... [2.655s] Computing hash join... [4.869s] Masking low complexity seeds... [0.191s] Searching alignments... [956.723s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.972s] Building query seed array... [2.764s] Computing hash join... [4.926s] Masking low complexity seeds... [0.201s] Searching alignments... [675.792s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.772s] Building query seed array... [2.322s] Computing hash join... [4.956s] Masking low complexity seeds... [0.201s] Searching alignments... [704.771s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.826s] Building query seed array... [2.141s] Computing hash join... [4.773s] Masking low complexity seeds... [0.191s] Searching alignments... [1028.65s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.268s] Building query seed array... [2.517s] Computing hash join... [4.821s] Masking low complexity seeds... [0.196s] Searching alignments... [770.45s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.807s] Building query seed array... [2.475s] Computing hash join... [4.812s] Masking low complexity seeds... [0.181s] Searching alignments... [558.869s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.946s] Building query seed array... [2.169s] Computing hash join... [4.817s] Masking low complexity seeds... [0.194s] Searching alignments... [576.186s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.549s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.938s] Sorting trace points... [7.775s] Computing alignments... [258.659s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (112023194141) exceeds memory limit. [0.064s] Sorting trace points... [5.684s] Computing alignments... [265.627s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (113353045826) exceeds memory limit. [0.051s] Sorting trace points... [7.802s] Computing alignments... [266.131s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (115999854041) exceeds memory limit. [0.066s] Sorting trace points... [6.434s] Computing alignments... [277.303s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (115561985321) exceeds memory limit. [0.368s] Sorting trace points... [5.72s] Computing alignments... [264.677s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (113359498001) exceeds memory limit. [0.078s] Sorting trace points... [6.721s] Computing alignments... [263.268s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (113966047871) exceeds memory limit. [0.07s] Sorting trace points... [7.626s] Computing alignments... [266.291s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (115822546586) exceeds memory limit. [0.058s] Sorting trace points... [8.181s] Computing alignments... [278.47s] Deallocating buffers... [0.16s] Loading trace points... Warning: resident size (115227021461) exceeds memory limit. [0.101s] Sorting trace points... [5.507s] Computing alignments... [266.475s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (114036457931) exceeds memory limit. [0.072s] Sorting trace points... [7.37s] Computing alignments... [269.154s] Deallocating buffers... [0.176s] Loading trace points... Warning: resident size (115235538866) exceeds memory limit. [0.083s] Sorting trace points... [8.036s] Computing alignments... [275.424s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (116940640706) exceeds memory limit. [0.053s] Sorting trace points... [5.867s] Computing alignments... [280.925s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (115972023506) exceeds memory limit. [0.001s] Sorting trace points... [6.659s] Computing alignments... [265.731s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (114354154331) exceeds memory limit. [0.066s] Sorting trace points... [5.495s] Computing alignments... [270.98s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (114947827346) exceeds memory limit. [0.076s] Sorting trace points... [7.127s] Computing alignments... [267.29s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (116357306606) exceeds memory limit. [0s] Sorting trace points... [6.377s] Computing alignments... [272.296s] Deallocating buffers... [0.138s] Loading trace points... [0s] [4458.65s] Deallocating reference... [0.067s] Loading reference sequences... [30.769s] Masking reference... [31.581s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.687s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.508s] Building query seed array... [2.414s] Computing hash join... [5.049s] Masking low complexity seeds... [0.202s] Searching alignments... [2149.86s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.051s] Building query seed array... [2.695s] Computing hash join... [4.935s] Masking low complexity seeds... [0.201s] Searching alignments... [940.342s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.154s] Building query seed array... [2.755s] Computing hash join... [4.953s] Masking low complexity seeds... [0.2s] Searching alignments... [682.503s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.77s] Building query seed array... [2.404s] Computing hash join... [4.958s] Masking low complexity seeds... [0.195s] Searching alignments... [708.734s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.071s] Building query seed array... [2.114s] Computing hash join... [4.76s] Masking low complexity seeds... [0.189s] Searching alignments... [1032.58s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.109s] Building query seed array... [2.408s] Computing hash join... [4.831s] Masking low complexity seeds... [0.193s] Searching alignments... [776.405s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.158s] Building query seed array... [2.569s] Computing hash join... [4.798s] Masking low complexity seeds... [0.192s] Searching alignments... [564.941s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.965s] Building query seed array... [2.128s] Computing hash join... [4.828s] Masking low complexity seeds... [0.192s] Searching alignments... [568.257s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.546s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.178s] Sorting trace points... [7.811s] Computing alignments... [249.026s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (112365561203) exceeds memory limit. [0.068s] Sorting trace points... [6.43s] Computing alignments... [255.925s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (113702245148) exceeds memory limit. [0.091s] Sorting trace points... [5.74s] Computing alignments... [258.301s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (116361034598) exceeds memory limit. [0.853s] Sorting trace points... [7.407s] Computing alignments... [268.232s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115919192033) exceeds memory limit. [0s] Sorting trace points... [6.402s] Computing alignments... [256.49s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (113707085438) exceeds memory limit. [0.159s] Sorting trace points... [7.221s] Computing alignments... [256.802s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (114315138413) exceeds memory limit. [0.058s] Sorting trace points... [7.182s] Computing alignments... [257.675s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (116180025443) exceeds memory limit. [0.071s] Sorting trace points... [7.555s] Computing alignments... [270.019s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (115585413638) exceeds memory limit. [0.072s] Sorting trace points... [7.29s] Computing alignments... [255.368s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (114386598983) exceeds memory limit. [0.109s] Sorting trace points... [6.766s] Computing alignments... [261.392s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (115589398943) exceeds memory limit. [0.106s] Sorting trace points... [7.534s] Computing alignments... [267.883s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (117305438618) exceeds memory limit. [0.052s] Sorting trace points... [7.153s] Computing alignments... [271.472s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (116332258178) exceeds memory limit. [0.073s] Sorting trace points... [6.899s] Computing alignments... [259.015s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (114709499633) exceeds memory limit. [0.402s] Sorting trace points... [5.992s] Computing alignments... [261.818s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (115308163568) exceeds memory limit. [0.058s] Sorting trace points... [6.874s] Computing alignments... [258.912s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (116722465703) exceeds memory limit. [0s] Sorting trace points... [8.096s] Computing alignments... [264.72s] Deallocating buffers... [0.136s] Loading trace points... [0s] [4328.09s] Deallocating reference... [0.069s] Loading reference sequences... [29.488s] Masking reference... [30.831s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [33.476s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.021s] Building query seed array... [2.405s] Computing hash join... [5.011s] Masking low complexity seeds... [0.195s] Searching alignments... [2151.72s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.16s] Building query seed array... [2.693s] Computing hash join... [4.968s] Masking low complexity seeds... [0.205s] Searching alignments... [955.349s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.341s] Building query seed array... [2.778s] Computing hash join... [4.93s] Masking low complexity seeds... [0.204s] Searching alignments... [676.671s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.932s] Building query seed array... [2.272s] Computing hash join... [4.916s] Masking low complexity seeds... [0.196s] Searching alignments... [706.806s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.39s] Building query seed array... [2.12s] Computing hash join... [4.81s] Masking low complexity seeds... [0.187s] Searching alignments... [1028.01s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.295s] Building query seed array... [2.456s] Computing hash join... [4.816s] Masking low complexity seeds... [0.191s] Searching alignments... [775.864s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.49s] Building query seed array... [2.497s] Computing hash join... [4.863s] Masking low complexity seeds... [0.187s] Searching alignments... [554.187s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.963s] Building query seed array... [2.135s] Computing hash join... [4.78s] Masking low complexity seeds... [0.184s] Searching alignments... [568.992s] Deallocating memory... [0s] Deallocating buffers... [0.129s] Clearing query masking... [1.525s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.772s] Sorting trace points... [7.57s] Computing alignments... [233.594s] Deallocating buffers... [0.115s] Loading trace points... Warning: resident size (111732208659) exceeds memory limit. [0.055s] Sorting trace points... [6.622s] Computing alignments... [241.278s] Deallocating buffers... [0.104s] Loading trace points... Warning: resident size (113055795894) exceeds memory limit. [0.043s] Sorting trace points... [7.845s] Computing alignments... [242.974s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (115690049649) exceeds memory limit. [0.059s] Sorting trace points... [7.372s] Computing alignments... [251.541s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (115255693089) exceeds memory limit. [0.071s] Sorting trace points... [7.846s] Computing alignments... [240.68s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (113062301739) exceeds memory limit. [0.066s] Sorting trace points... [6.562s] Computing alignments... [240.581s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (113664241764) exceeds memory limit. [0.069s] Sorting trace points... [7.734s] Computing alignments... [242.927s] Deallocating buffers... [0.167s] Loading trace points... Warning: resident size (115511347074) exceeds memory limit. [0.06s] Sorting trace points... [8.383s] Computing alignments... [252.007s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (114923227344) exceeds memory limit. [0.08s] Sorting trace points... [7.388s] Computing alignments... [242.056s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (113741450739) exceeds memory limit. [0.081s] Sorting trace points... [7.904s] Computing alignments... [246.19s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (114930598734) exceeds memory limit. [0.062s] Sorting trace points... [7.855s] Computing alignments... [251.393s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (116625844149) exceeds memory limit. [0.306s] Sorting trace points... [8.646s] Computing alignments... [252.984s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (115662549669) exceeds memory limit. [0.074s] Sorting trace points... [7.685s] Computing alignments... [242.7s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (114053000919) exceeds memory limit. [0.061s] Sorting trace points... [6.501s] Computing alignments... [245.947s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114639909549) exceeds memory limit. [0.087s] Sorting trace points... [6.557s] Computing alignments... [243.764s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (116042497029) exceeds memory limit. [0s] Sorting trace points... [5.617s] Computing alignments... [248.052s] Deallocating buffers... [0.145s] Loading trace points... [0s] [4077.99s] Deallocating reference... [0.065s] Loading reference sequences... [24.577s] Masking reference... [25.486s] Initializing dictionary... [0.064s] Initializing temporary storage... [0.007s] Building reference histograms... [26.351s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.52s] Building query seed array... [2.368s] Computing hash join... [4.13s] Masking low complexity seeds... [0.198s] Searching alignments... [1725.95s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.169s] Building query seed array... [2.651s] Computing hash join... [4.123s] Masking low complexity seeds... [0.194s] Searching alignments... [763.718s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.884s] Building query seed array... [2.832s] Computing hash join... [4.205s] Masking low complexity seeds... [0.188s] Searching alignments... [539.585s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.058s] Building query seed array... [2.35s] Computing hash join... [4.079s] Masking low complexity seeds... [0.185s] Searching alignments... [571.596s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.254s] Building query seed array... [2.143s] Computing hash join... [4.028s] Masking low complexity seeds... [0.178s] Searching alignments... [815.3s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.027s] Building query seed array... [2.395s] Computing hash join... [4.071s] Masking low complexity seeds... [0.188s] Searching alignments... [629.327s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.902s] Building query seed array... [2.493s] Computing hash join... [3.954s] Masking low complexity seeds... [0.179s] Searching alignments... [445.267s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.176s] Building query seed array... [2.204s] Computing hash join... [4.021s] Masking low complexity seeds... [0.183s] Searching alignments... [461.803s] Deallocating memory... [0s] Deallocating buffers... [0.122s] Clearing query masking... [1.496s] Opening temporary output file... [0.016s] Computing alignments... Loading trace points... [30.715s] Sorting trace points... [6.178s] Computing alignments... [181.205s] Deallocating buffers... [0.116s] Loading trace points... [0.063s] Sorting trace points... [5.505s] Computing alignments... [185.166s] Deallocating buffers... [0.102s] Loading trace points... [0.062s] Sorting trace points... [5.098s] Computing alignments... [188.245s] Deallocating buffers... [0.111s] Loading trace points... [0.055s] Sorting trace points... [5.452s] Computing alignments... [195.059s] Deallocating buffers... [0.11s] Loading trace points... [0.099s] Sorting trace points... [5.767s] Computing alignments... [187.313s] Deallocating buffers... [0.101s] Loading trace points... [0.076s] Sorting trace points... [6.478s] Computing alignments... [186.307s] Deallocating buffers... [0.119s] Loading trace points... [0.057s] Sorting trace points... [6.45s] Computing alignments... [188.343s] Deallocating buffers... [0.11s] Loading trace points... [0.114s] Sorting trace points... [4.746s] Computing alignments... [196.448s] Deallocating buffers... [0.12s] Loading trace points... [0.059s] Sorting trace points... [4.683s] Computing alignments... [187.004s] Deallocating buffers... [0.116s] Loading trace points... [0.06s] Sorting trace points... [5.029s] Computing alignments... [190.462s] Deallocating buffers... [0.112s] Loading trace points... [0.073s] Sorting trace points... [6.633s] Computing alignments... [192.966s] Deallocating buffers... [0.126s] Loading trace points... [0.081s] Sorting trace points... [4.691s] Computing alignments... [196.832s] Deallocating buffers... [0.118s] Loading trace points... [0.001s] Sorting trace points... [4.479s] Computing alignments... [188.189s] Deallocating buffers... [0.108s] Loading trace points... [0.06s] Sorting trace points... [6.321s] Computing alignments... [188.784s] Deallocating buffers... [0.124s] Loading trace points... [0.001s] Sorting trace points... [4.787s] Computing alignments... [188.941s] Deallocating buffers... [0.114s] Loading trace points... [0s] Sorting trace points... [6.501s] Computing alignments... [192.854s] Deallocating buffers... [0.121s] Loading trace points... [0s] [3156.41s] Deallocating reference... [0.05s] Loading reference sequences... [0.074s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [11028.2s] [11028.2s] Deallocating queries... [0.063s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.089s] [3.919s] Closing the database... [0s] Cleaning up... [0s] Total time = 174767s Reported 17321149911 pairwise alignments, 17321149911 HSPs. 7083899 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-24.trimmed.R1.fastq.gz complete: CH07-24.trimmed.R1.blastx.meganized.daa Now MEGANizing CH07-24.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-24.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (200.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (26,656.9s) Total reads: 7,083,899 With hits: 7,083,899 Alignments: 11,420,617,713 Assig. Taxonomy: 4,732,088 Assig. SEED: 112,728 Assig. EGGNOG: 24,662 Assig. GTDB: 235,864 Assig. EC: 1,005,887 Assig. INTERPRO2GO: 2,490,757 MinSupport set to: 3541 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 6,915 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (32.9s) Min-supp. changes: 4,663 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.0s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 166 Class. SEED: 494 Class. EGGNOG: 1,604 Class. GTDB: 45 Class. EC: 2,374 Class. INTERPRO2GO: 8,804 Total time: 26,908s Peak memory: 36.6 of 195.3G MEGANization of CH07-24.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-24.trimmed.R2.fastq.gz... afcf6dc6906ca4d8ed55489ae8f9721d /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-24.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-24.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.312s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.754s] Opening the output file... [0s] Loading query sequences... [94.952s] Masking queries... [25.053s] Algorithm: Double-indexed Building query histograms... [19.29s] Loading reference sequences... [29.911s] Masking reference... [30.822s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.893s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.234s] Building query seed array... [3.163s] Computing hash join... [5.3s] Masking low complexity seeds... [0.216s] Searching alignments... [2224.88s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.92s] Building query seed array... [2.753s] Computing hash join... [4.95s] Masking low complexity seeds... [0.215s] Searching alignments... [983.666s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.547s] Building query seed array... [2.818s] Computing hash join... [5.05s] Masking low complexity seeds... [0.214s] Searching alignments... [700.153s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.057s] Building query seed array... [2.282s] Computing hash join... [4.996s] Masking low complexity seeds... [0.218s] Searching alignments... [717.344s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.986s] Building query seed array... [2.129s] Computing hash join... [4.757s] Masking low complexity seeds... [0.201s] Searching alignments... [1071s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.584s] Building query seed array... [2.444s] Computing hash join... [4.824s] Masking low complexity seeds... [0.203s] Searching alignments... [809.097s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.302s] Building query seed array... [2.607s] Computing hash join... [4.806s] Masking low complexity seeds... [0.2s] Searching alignments... [570.231s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.067s] Building query seed array... [2.148s] Computing hash join... [4.706s] Masking low complexity seeds... [0.202s] Searching alignments... [590.493s] Deallocating memory... [0s] Deallocating buffers... [0.132s] Clearing query masking... [1.579s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.83s] Sorting trace points... [7.882s] Computing alignments... [239.119s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (114068840277) exceeds memory limit. [0.12s] Sorting trace points... [7.554s] Computing alignments... [239.799s] Deallocating buffers... [0.123s] Loading trace points... Warning: resident size (114769217412) exceeds memory limit. [0.066s] Sorting trace points... [7.052s] Computing alignments... [242.083s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (116456952387) exceeds memory limit. [0.002s] Sorting trace points... [5.867s] Computing alignments... [248.042s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (116375765262) exceeds memory limit. [0.142s] Sorting trace points... [6.72s] Computing alignments... [242.523s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (114794789772) exceeds memory limit. [0.05s] Sorting trace points... [7.547s] Computing alignments... [241.308s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (114966430767) exceeds memory limit. [0.055s] Sorting trace points... [8.084s] Computing alignments... [243.227s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (116659957392) exceeds memory limit. [0.049s] Sorting trace points... [5.941s] Computing alignments... [249.392s] Deallocating buffers... [0.117s] Loading trace points... Warning: resident size (116226620577) exceeds memory limit. [0.054s] Sorting trace points... [7.918s] Computing alignments... [239.367s] Deallocating buffers... [0.164s] Loading trace points... Warning: resident size (114670845177) exceeds memory limit. [0.081s] Sorting trace points... [7.416s] Computing alignments... [245.18s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (115613565252) exceeds memory limit. [0.08s] Sorting trace points... [7.994s] Computing alignments... [243.881s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (116909697672) exceeds memory limit. [0.056s] Sorting trace points... [7.711s] Computing alignments... [248.149s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (116022194922) exceeds memory limit. [1.442s] Sorting trace points... [5.849s] Computing alignments... [239.609s] Deallocating buffers... [0.114s] Loading trace points... Warning: resident size (115079914227) exceeds memory limit. [0.043s] Sorting trace points... [8.071s] Computing alignments... [239.983s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (115437849147) exceeds memory limit. [0.094s] Sorting trace points... [7.913s] Computing alignments... [242.102s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (115574491977) exceeds memory limit. [0s] Sorting trace points... [7.221s] Computing alignments... [238.625s] Deallocating buffers... [0.131s] Loading trace points... [0s] [4042.56s] Deallocating reference... [0.064s] Loading reference sequences... [29.663s] Masking reference... [32.158s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.045s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.436s] Building query seed array... [2.42s] Computing hash join... [5.001s] Masking low complexity seeds... [0.217s] Searching alignments... [2195.35s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.45s] Building query seed array... [2.717s] Computing hash join... [5.016s] Masking low complexity seeds... [0.224s] Searching alignments... [973.858s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.254s] Building query seed array... [2.736s] Computing hash join... [4.954s] Masking low complexity seeds... [0.216s] Searching alignments... [683.012s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.269s] Building query seed array... [2.321s] Computing hash join... [4.993s] Masking low complexity seeds... [0.226s] Searching alignments... [713.503s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.247s] Building query seed array... [2.12s] Computing hash join... [4.74s] Masking low complexity seeds... [0.197s] Searching alignments... [1057.86s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.655s] Building query seed array... [2.422s] Computing hash join... [4.839s] Masking low complexity seeds... [0.193s] Searching alignments... [788.666s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.31s] Building query seed array... [2.566s] Computing hash join... [4.847s] Masking low complexity seeds... [0.207s] Searching alignments... [563.645s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.779s] Building query seed array... [2.264s] Computing hash join... [4.781s] Masking low complexity seeds... [0.21s] Searching alignments... [585.361s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.414s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [38.756s] Sorting trace points... [7.959s] Computing alignments... [250.983s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (113569670982) exceeds memory limit. [0.099s] Sorting trace points... [5.608s] Computing alignments... [251.433s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (114267372102) exceeds memory limit. [0.086s] Sorting trace points... [7.586s] Computing alignments... [254.465s] Deallocating buffers... [0.17s] Loading trace points... Warning: resident size (115949179032) exceeds memory limit. [0.082s] Sorting trace points... [6.56s] Computing alignments... [263.012s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (115865743602) exceeds memory limit. [0.064s] Sorting trace points... [5.609s] Computing alignments... [256.767s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (114293374722) exceeds memory limit. [0.051s] Sorting trace points... [6.676s] Computing alignments... [254.614s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (114467784447) exceeds memory limit. [0.045s] Sorting trace points... [6.171s] Computing alignments... [256.332s] Deallocating buffers... [0.161s] Loading trace points... Warning: resident size (116148632187) exceeds memory limit. [0.077s] Sorting trace points... [7.706s] Computing alignments... [262.387s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115714042137) exceeds memory limit. [0.074s] Sorting trace points... [5.9s] Computing alignments... [251.271s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (114168667047) exceeds memory limit. [0.001s] Sorting trace points... [5.666s] Computing alignments... [257.68s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (115105469112) exceeds memory limit. [0.064s] Sorting trace points... [7.896s] Computing alignments... [254.479s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (116397107022) exceeds memory limit. [0.077s] Sorting trace points... [5.811s] Computing alignments... [263.406s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (115518206037) exceeds memory limit. [0.001s] Sorting trace points... [6.996s] Computing alignments... [249.952s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114576583212) exceeds memory limit. [0.043s] Sorting trace points... [7.871s] Computing alignments... [252.596s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (114932198037) exceeds memory limit. [0s] Sorting trace points... [6.888s] Computing alignments... [253.39s] Deallocating buffers... [0.155s] Loading trace points... Warning: resident size (115071015057) exceeds memory limit. [0s] Sorting trace points... [5.61s] Computing alignments... [250.846s] Deallocating buffers... [0.161s] Loading trace points... [0s] [4232.16s] Deallocating reference... [0.071s] Loading reference sequences... [29.416s] Masking reference... [30.847s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [33.038s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.519s] Building query seed array... [2.387s] Computing hash join... [5.051s] Masking low complexity seeds... [0.214s] Searching alignments... [2214.49s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.837s] Building query seed array... [2.7s] Computing hash join... [4.93s] Masking low complexity seeds... [0.227s] Searching alignments... [973.74s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.493s] Building query seed array... [2.807s] Computing hash join... [5.028s] Masking low complexity seeds... [0.215s] Searching alignments... [698.296s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.26s] Building query seed array... [2.32s] Computing hash join... [4.996s] Masking low complexity seeds... [0.212s] Searching alignments... [718.014s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.969s] Building query seed array... [2.108s] Computing hash join... [4.793s] Masking low complexity seeds... [0.213s] Searching alignments... [1073.59s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.948s] Building query seed array... [2.358s] Computing hash join... [4.787s] Masking low complexity seeds... [0.201s] Searching alignments... [811.195s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.358s] Building query seed array... [2.531s] Computing hash join... [4.791s] Masking low complexity seeds... [0.202s] Searching alignments... [565.13s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.758s] Building query seed array... [2.152s] Computing hash join... [4.774s] Masking low complexity seeds... [0.197s] Searching alignments... [590.379s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.481s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [38.464s] Sorting trace points... [7.669s] Computing alignments... [250.192s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (113319034970) exceeds memory limit. [0.076s] Sorting trace points... [7.173s] Computing alignments... [247.861s] Deallocating buffers... [0.119s] Loading trace points... Warning: resident size (114009260300) exceeds memory limit. [0.066s] Sorting trace points... [5.724s] Computing alignments... [251.09s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (115678342835) exceeds memory limit. [0.066s] Sorting trace points... [7.221s] Computing alignments... [260.836s] Deallocating buffers... [0.16s] Loading trace points... Warning: resident size (115603200020) exceeds memory limit. [0.059s] Sorting trace points... [6.738s] Computing alignments... [256.809s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (114037344980) exceeds memory limit. [0.071s] Sorting trace points... [6.764s] Computing alignments... [251.916s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114207561725) exceeds memory limit. [0.071s] Sorting trace points... [8.266s] Computing alignments... [253.566s] Deallocating buffers... [0.116s] Loading trace points... Warning: resident size (115888719260) exceeds memory limit. [0.072s] Sorting trace points... [8.13s] Computing alignments... [259.038s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (115457386130) exceeds memory limit. [0.075s] Sorting trace points... [6.082s] Computing alignments... [246.919s] Deallocating buffers... [0.155s] Loading trace points... Warning: resident size (113915627720) exceeds memory limit. [0.001s] Sorting trace points... [5.784s] Computing alignments... [255.664s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (114846368225) exceeds memory limit. [0.074s] Sorting trace points... [6.579s] Computing alignments... [253.26s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (116125311410) exceeds memory limit. [0.065s] Sorting trace points... [7.905s] Computing alignments... [258.758s] Deallocating buffers... [0.112s] Loading trace points... Warning: resident size (115248641615) exceeds memory limit. [0.002s] Sorting trace points... [6.007s] Computing alignments... [247.544s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (114315933440) exceeds memory limit. [0.052s] Sorting trace points... [6.091s] Computing alignments... [250.189s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (114668135495) exceeds memory limit. [0s] Sorting trace points... [7.668s] Computing alignments... [250.914s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114806267375) exceeds memory limit. [0s] Sorting trace points... [6.89s] Computing alignments... [247.754s] Deallocating buffers... [0.156s] Loading trace points... [0s] [4194.58s] Deallocating reference... [0.067s] Loading reference sequences... [30.034s] Masking reference... [30.849s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.788s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.159s] Building query seed array... [2.317s] Computing hash join... [5.058s] Masking low complexity seeds... [0.214s] Searching alignments... [2233.04s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.127s] Building query seed array... [2.671s] Computing hash join... [4.988s] Masking low complexity seeds... [0.214s] Searching alignments... [960.456s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.567s] Building query seed array... [2.891s] Computing hash join... [5.064s] Masking low complexity seeds... [0.212s] Searching alignments... [700.488s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.316s] Building query seed array... [2.282s] Computing hash join... [4.933s] Masking low complexity seeds... [0.215s] Searching alignments... [719.368s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.914s] Building query seed array... [2.175s] Computing hash join... [4.792s] Masking low complexity seeds... [0.202s] Searching alignments... [1056.85s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.545s] Building query seed array... [2.414s] Computing hash join... [4.744s] Masking low complexity seeds... [0.193s] Searching alignments... [800.685s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.938s] Building query seed array... [2.513s] Computing hash join... [4.854s] Masking low complexity seeds... [0.2s] Searching alignments... [568.553s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.118s] Building query seed array... [2.165s] Computing hash join... [4.724s] Masking low complexity seeds... [0.195s] Searching alignments... [592.654s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.431s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [39.041s] Sorting trace points... [7.83s] Computing alignments... [243.26s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (113958862974) exceeds memory limit. [0.057s] Sorting trace points... [5.631s] Computing alignments... [243.302s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114654184944) exceeds memory limit. [0.005s] Sorting trace points... [8.348s] Computing alignments... [246.896s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (116333881554) exceeds memory limit. [0.073s] Sorting trace points... [7.338s] Computing alignments... [254.206s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (116257494324) exceeds memory limit. [0.061s] Sorting trace points... [5.671s] Computing alignments... [248.713s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (114681297849) exceeds memory limit. [0.106s] Sorting trace points... [8.094s] Computing alignments... [246.485s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (114853357374) exceeds memory limit. [0.066s] Sorting trace points... [7.976s] Computing alignments... [247.793s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (116545615134) exceeds memory limit. [0.069s] Sorting trace points... [8.365s] Computing alignments... [253.134s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (116110454964) exceeds memory limit. [0.078s] Sorting trace points... [5.567s] Computing alignments... [244.627s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (114557636904) exceeds memory limit. [0.07s] Sorting trace points... [5.671s] Computing alignments... [249.972s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (115496750469) exceeds memory limit. [0.001s] Sorting trace points... [8.037s] Computing alignments... [247.182s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (116784588564) exceeds memory limit. [0.048s] Sorting trace points... [8.484s] Computing alignments... [252.455s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (115899297459) exceeds memory limit. [0.095s] Sorting trace points... [8.014s] Computing alignments... [243.448s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (114960972384) exceeds memory limit. [0.075s] Sorting trace points... [5.983s] Computing alignments... [245.443s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (115317596154) exceeds memory limit. [0.054s] Sorting trace points... [7.895s] Computing alignments... [246.006s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (115453131909) exceeds memory limit. [0s] Sorting trace points... [6.063s] Computing alignments... [241.965s] Deallocating buffers... [0.116s] Loading trace points... [0s] [4112.15s] Deallocating reference... [0.064s] Loading reference sequences... [241.416s] Masking reference... [31.353s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.159s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.02s] Building query seed array... [2.315s] Computing hash join... [4.942s] Masking low complexity seeds... [0.214s] Searching alignments... [2193.63s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.455s] Building query seed array... [2.746s] Computing hash join... [4.922s] Masking low complexity seeds... [0.222s] Searching alignments... [962.755s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.765s] Building query seed array... [2.806s] Computing hash join... [4.896s] Masking low complexity seeds... [0.337s] Searching alignments... [688.584s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.165s] Building query seed array... [2.322s] Computing hash join... [4.905s] Masking low complexity seeds... [0.209s] Searching alignments... [722.442s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.952s] Building query seed array... [2.201s] Computing hash join... [4.773s] Masking low complexity seeds... [0.198s] Searching alignments... [1069.67s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.268s] Building query seed array... [2.369s] Computing hash join... [4.806s] Masking low complexity seeds... [0.205s] Searching alignments... [796.073s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.296s] Building query seed array... [2.57s] Computing hash join... [4.837s] Masking low complexity seeds... [0.198s] Searching alignments... [564.734s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.068s] Building query seed array... [2.092s] Computing hash join... [4.807s] Masking low complexity seeds... [0.2s] Searching alignments... [587.25s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.496s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [39.226s] Sorting trace points... [7.343s] Computing alignments... [260.89s] Deallocating buffers... [0.157s] Loading trace points... Warning: resident size (113846026840) exceeds memory limit. [0.066s] Sorting trace points... [6.572s] Computing alignments... [258.551s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (114545392795) exceeds memory limit. [0.067s] Sorting trace points... [8.151s] Computing alignments... [261.444s] Deallocating buffers... [0.169s] Loading trace points... Warning: resident size (116228940655) exceeds memory limit. [0.059s] Sorting trace points... [6.921s] Computing alignments... [270.517s] Deallocating buffers... [0.16s] Loading trace points... Warning: resident size (116146080745) exceeds memory limit. [0.083s] Sorting trace points... [6.27s] Computing alignments... [267.747s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (114569848975) exceeds memory limit. [0.049s] Sorting trace points... [6.746s] Computing alignments... [264.367s] Deallocating buffers... [0.157s] Loading trace points... Warning: resident size (114745659655) exceeds memory limit. [0.087s] Sorting trace points... [5.666s] Computing alignments... [265.821s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (116434838545) exceeds memory limit. [0.053s] Sorting trace points... [5.962s] Computing alignments... [270.044s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (115998624655) exceeds memory limit. [0.062s] Sorting trace points... [5.904s] Computing alignments... [258.617s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114447477025) exceeds memory limit. [0.1s] Sorting trace points... [6.949s] Computing alignments... [267.029s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115386885655) exceeds memory limit. [0.071s] Sorting trace points... [5.854s] Computing alignments... [264.664s] Deallocating buffers... [0.157s] Loading trace points... Warning: resident size (116679764755) exceeds memory limit. [0.642s] Sorting trace points... [5.899s] Computing alignments... [271.713s] Deallocating buffers... [0.152s] Loading trace points... Warning: resident size (115796562835) exceeds memory limit. [0.097s] Sorting trace points... [6.121s] Computing alignments... [259.269s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (114854818225) exceeds memory limit. [0.054s] Sorting trace points... [5.812s] Computing alignments... [260.046s] Deallocating buffers... [0.156s] Loading trace points... Warning: resident size (115211532175) exceeds memory limit. [0.085s] Sorting trace points... [7.856s] Computing alignments... [261.402s] Deallocating buffers... [0.131s] Loading trace points... Warning: resident size (115348212595) exceeds memory limit. [0s] Sorting trace points... [6.023s] Computing alignments... [260.417s] Deallocating buffers... [0.141s] Loading trace points... [0s] [4369.89s] Deallocating reference... [0.068s] Loading reference sequences... [247.096s] Masking reference... [31.139s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.01s] Building reference histograms... [32.954s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.158s] Building query seed array... [2.432s] Computing hash join... [5.083s] Masking low complexity seeds... [0.214s] Searching alignments... [2201.29s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.548s] Building query seed array... [2.747s] Computing hash join... [4.929s] Masking low complexity seeds... [0.211s] Searching alignments... [962.251s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.396s] Building query seed array... [2.712s] Computing hash join... [4.956s] Masking low complexity seeds... [0.212s] Searching alignments... [701.299s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.86s] Building query seed array... [2.302s] Computing hash join... [4.984s] Masking low complexity seeds... [0.211s] Searching alignments... [705.988s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.979s] Building query seed array... [2.11s] Computing hash join... [4.768s] Masking low complexity seeds... [0.195s] Searching alignments... [1059.4s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.559s] Building query seed array... [2.502s] Computing hash join... [4.819s] Masking low complexity seeds... [0.2s] Searching alignments... [794.15s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.954s] Building query seed array... [2.535s] Computing hash join... [4.829s] Masking low complexity seeds... [0.196s] Searching alignments... [566.839s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.007s] Building query seed array... [2.127s] Computing hash join... [4.8s] Masking low complexity seeds... [0.202s] Searching alignments... [584.311s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.471s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.607s] Sorting trace points... [7.77s] Computing alignments... [249.905s] Deallocating buffers... [0.118s] Loading trace points... Warning: resident size (113399083574) exceeds memory limit. [0.081s] Sorting trace points... [5.772s] Computing alignments... [250.309s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (114094574414) exceeds memory limit. [0.002s] Sorting trace points... [7.296s] Computing alignments... [251.88s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (115769035709) exceeds memory limit. [0.071s] Sorting trace points... [6.024s] Computing alignments... [260.103s] Deallocating buffers... [0.153s] Loading trace points... Warning: resident size (115687647674) exceeds memory limit. [0.001s] Sorting trace points... [7.481s] Computing alignments... [256.054s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (114119350244) exceeds memory limit. [0.082s] Sorting trace points... [5.79s] Computing alignments... [252.536s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (114292512089) exceeds memory limit. [0.09s] Sorting trace points... [7.169s] Computing alignments... [256.585s] Deallocating buffers... [0.112s] Loading trace points... Warning: resident size (115971638969) exceeds memory limit. [0.091s] Sorting trace points... [6.891s] Computing alignments... [259.841s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115538924684) exceeds memory limit. [0.075s] Sorting trace points... [5.904s] Computing alignments... [250.235s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (113995923539) exceeds memory limit. [0.054s] Sorting trace points... [7.708s] Computing alignments... [256.306s] Deallocating buffers... [0.144s] Loading trace points... Warning: resident size (114929527304) exceeds memory limit. [0.002s] Sorting trace points... [6.074s] Computing alignments... [255.085s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (116215652219) exceeds memory limit. [0.322s] Sorting trace points... [7.199s] Computing alignments... [261.314s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115336801169) exceeds memory limit. [0.072s] Sorting trace points... [7.837s] Computing alignments... [250.136s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (114400417334) exceeds memory limit. [0.051s] Sorting trace points... [7.167s] Computing alignments... [251.874s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (114758780474) exceeds memory limit. [0.057s] Sorting trace points... [5.667s] Computing alignments... [252.081s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114894810404) exceeds memory limit. [0s] Sorting trace points... [7.83s] Computing alignments... [250.852s] Deallocating buffers... [0.121s] Loading trace points... [0s] [4216.62s] Deallocating reference... [0.065s] Loading reference sequences... [29.948s] Masking reference... [30.855s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.768s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.362s] Building query seed array... [2.403s] Computing hash join... [5.006s] Masking low complexity seeds... [0.208s] Searching alignments... [2196.67s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.345s] Building query seed array... [2.759s] Computing hash join... [4.988s] Masking low complexity seeds... [0.221s] Searching alignments... [956.407s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.444s] Building query seed array... [2.763s] Computing hash join... [5.013s] Masking low complexity seeds... [0.215s] Searching alignments... [691.281s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.976s] Building query seed array... [2.31s] Computing hash join... [4.946s] Masking low complexity seeds... [0.211s] Searching alignments... [710.286s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.636s] Building query seed array... [2.126s] Computing hash join... [4.845s] Masking low complexity seeds... [0.204s] Searching alignments... [1055.17s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.388s] Building query seed array... [2.449s] Computing hash join... [4.736s] Masking low complexity seeds... [0.2s] Searching alignments... [792.682s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.122s] Building query seed array... [2.486s] Computing hash join... [4.891s] Masking low complexity seeds... [0.21s] Searching alignments... [564.117s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.267s] Building query seed array... [2.159s] Computing hash join... [4.74s] Masking low complexity seeds... [0.207s] Searching alignments... [590.633s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.516s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.443s] Sorting trace points... [8.292s] Computing alignments... [252.506s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (113428632415) exceeds memory limit. [0.059s] Sorting trace points... [5.889s] Computing alignments... [251.77s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (114122777155) exceeds memory limit. [0.058s] Sorting trace points... [6.991s] Computing alignments... [254.641s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (115796637835) exceeds memory limit. [0.053s] Sorting trace points... [6.548s] Computing alignments... [263.035s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115716160480) exceeds memory limit. [0.041s] Sorting trace points... [6.556s] Computing alignments... [259.528s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (114147911440) exceeds memory limit. [0.112s] Sorting trace points... [7.653s] Computing alignments... [255.741s] Deallocating buffers... [0.107s] Loading trace points... Warning: resident size (114320039605) exceeds memory limit. [0.093s] Sorting trace points... [5.726s] Computing alignments... [259.181s] Deallocating buffers... [0.167s] Loading trace points... Warning: resident size (115999270225) exceeds memory limit. [0.085s] Sorting trace points... [6.087s] Computing alignments... [263.501s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (115568256130) exceeds memory limit. [0.002s] Sorting trace points... [7.76s] Computing alignments... [252.263s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114026808790) exceeds memory limit. [0.625s] Sorting trace points... [6.351s] Computing alignments... [259.498s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (114959807035) exceeds memory limit. [0.074s] Sorting trace points... [7.52s] Computing alignments... [258.01s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (116243729845) exceeds memory limit. [0.079s] Sorting trace points... [6.015s] Computing alignments... [263.563s] Deallocating buffers... [0.127s] Loading trace points... Warning: resident size (115364901310) exceeds memory limit. [0.072s] Sorting trace points... [8.178s] Computing alignments... [252.612s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (114428125525) exceeds memory limit. [0.064s] Sorting trace points... [5.797s] Computing alignments... [254.654s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114783583630) exceeds memory limit. [0.046s] Sorting trace points... [8.219s] Computing alignments... [255.131s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (114921993265) exceeds memory limit. [0s] Sorting trace points... [7.078s] Computing alignments... [253.951s] Deallocating buffers... [0.132s] Loading trace points... [0s] [4262.42s] Deallocating reference... [0.063s] Loading reference sequences... [31.076s] Masking reference... [32.205s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.011s] Building reference histograms... [32.106s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.3s] Building query seed array... [2.367s] Computing hash join... [5.01s] Masking low complexity seeds... [0.214s] Searching alignments... [2201.2s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.539s] Building query seed array... [2.694s] Computing hash join... [4.992s] Masking low complexity seeds... [0.22s] Searching alignments... [960.905s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.472s] Building query seed array... [2.828s] Computing hash join... [4.968s] Masking low complexity seeds... [0.211s] Searching alignments... [692.096s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.745s] Building query seed array... [2.432s] Computing hash join... [4.896s] Masking low complexity seeds... [0.219s] Searching alignments... [704.045s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.818s] Building query seed array... [2.105s] Computing hash join... [4.795s] Masking low complexity seeds... [0.196s] Searching alignments... [1070.81s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.573s] Building query seed array... [2.463s] Computing hash join... [4.824s] Masking low complexity seeds... [0.223s] Searching alignments... [789.614s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.195s] Building query seed array... [2.518s] Computing hash join... [4.857s] Masking low complexity seeds... [0.206s] Searching alignments... [560.03s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.907s] Building query seed array... [2.142s] Computing hash join... [4.755s] Masking low complexity seeds... [0.208s] Searching alignments... [581.224s] Deallocating memory... [0s] Deallocating buffers... [0.126s] Clearing query masking... [1.434s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [38.927s] Sorting trace points... [6.67s] Computing alignments... [240.901s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (113089033036) exceeds memory limit. [0.047s] Sorting trace points... [5.55s] Computing alignments... [241.02s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (113776440166) exceeds memory limit. [0.105s] Sorting trace points... [6.352s] Computing alignments... [244.426s] Deallocating buffers... [0.147s] Loading trace points... Warning: resident size (115437685021) exceeds memory limit. [0.064s] Sorting trace points... [7.878s] Computing alignments... [251.755s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (115361548141) exceeds memory limit. [0.067s] Sorting trace points... [6.293s] Computing alignments... [246.773s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (113803294981) exceeds memory limit. [0.062s] Sorting trace points... [7.801s] Computing alignments... [242.557s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (113972785126) exceeds memory limit. [0.06s] Sorting trace points... [6.609s] Computing alignments... [244.635s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (115644478366) exceeds memory limit. [0.071s] Sorting trace points... [6.306s] Computing alignments... [251.064s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (115215848671) exceeds memory limit. [0.089s] Sorting trace points... [5.551s] Computing alignments... [240.856s] Deallocating buffers... [0.11s] Loading trace points... Warning: resident size (113682282001) exceeds memory limit. [0.052s] Sorting trace points... [8.131s] Computing alignments... [247.383s] Deallocating buffers... [0.122s] Loading trace points... Warning: resident size (114609445051) exceeds memory limit. [0.08s] Sorting trace points... [5.88s] Computing alignments... [245.306s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (115882286926) exceeds memory limit. [0.064s] Sorting trace points... [6.244s] Computing alignments... [250.269s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (115007663341) exceeds memory limit. [0.046s] Sorting trace points... [5.928s] Computing alignments... [239.864s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114077945761) exceeds memory limit. [0.093s] Sorting trace points... [5.953s] Computing alignments... [241.487s] Deallocating buffers... [0.107s] Loading trace points... Warning: resident size (114426656071) exceeds memory limit. [0.072s] Sorting trace points... [6.307s] Computing alignments... [242.622s] Deallocating buffers... [0.117s] Loading trace points... Warning: resident size (114563071891) exceeds memory limit. [0s] Sorting trace points... [5.499s] Computing alignments... [238.978s] Deallocating buffers... [0.146s] Loading trace points... [0s] [4054.97s] Deallocating reference... [0.069s] Loading reference sequences... [32.433s] Masking reference... [31.723s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.29s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.023s] Building query seed array... [2.424s] Computing hash join... [5s] Masking low complexity seeds... [0.216s] Searching alignments... [2231.81s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.761s] Building query seed array... [2.696s] Computing hash join... [4.941s] Masking low complexity seeds... [0.209s] Searching alignments... [981.389s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.581s] Building query seed array... [2.735s] Computing hash join... [5.018s] Masking low complexity seeds... [0.21s] Searching alignments... [708.244s] Deallocating memory... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.22s] Building query seed array... [2.345s] Computing hash join... [4.95s] Masking low complexity seeds... [0.212s] Searching alignments... [712.052s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.181s] Building query seed array... [2.105s] Computing hash join... [4.869s] Masking low complexity seeds... [0.203s] Searching alignments... [1060.53s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.195s] Building query seed array... [2.452s] Computing hash join... [4.797s] Masking low complexity seeds... [0.195s] Searching alignments... [801.745s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.038s] Building query seed array... [2.559s] Computing hash join... [4.856s] Masking low complexity seeds... [0.205s] Searching alignments... [572.003s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.16s] Building query seed array... [2.163s] Computing hash join... [4.983s] Masking low complexity seeds... [0.198s] Searching alignments... [589.213s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.561s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [39.129s] Sorting trace points... [7.934s] Computing alignments... [243.249s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (113569693969) exceeds memory limit. [0.077s] Sorting trace points... [6.665s] Computing alignments... [242.932s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (114262780924) exceeds memory limit. [0.074s] Sorting trace points... [6.507s] Computing alignments... [246.77s] Deallocating buffers... [0.161s] Loading trace points... Warning: resident size (115933946314) exceeds memory limit. [0.059s] Sorting trace points... [7.293s] Computing alignments... [253.803s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (115858793869) exceeds memory limit. [0.079s] Sorting trace points... [7.921s] Computing alignments... [249.329s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (114290227624) exceeds memory limit. [0.057s] Sorting trace points... [8.044s] Computing alignments... [247.015s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (114461175919) exceeds memory limit. [0.052s] Sorting trace points... [7.623s] Computing alignments... [246.398s] Deallocating buffers... [0.15s] Loading trace points... Warning: resident size (116146344154) exceeds memory limit. [0.061s] Sorting trace points... [7.806s] Computing alignments... [254.616s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (115711070419) exceeds memory limit. [0.078s] Sorting trace points... [7.748s] Computing alignments... [243.72s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (114166790104) exceeds memory limit. [0.09s] Sorting trace points... [6.554s] Computing alignments... [250.822s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115102993924) exceeds memory limit. [0.09s] Sorting trace points... [5.901s] Computing alignments... [247.652s] Deallocating buffers... [0.168s] Loading trace points... Warning: resident size (116383022434) exceeds memory limit. [0.071s] Sorting trace points... [7.05s] Computing alignments... [254.544s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115500727639) exceeds memory limit. [0.095s] Sorting trace points... [6.425s] Computing alignments... [244.102s] Deallocating buffers... [0.119s] Loading trace points... Warning: resident size (114567131284) exceeds memory limit. [0.06s] Sorting trace points... [8.046s] Computing alignments... [245.191s] Deallocating buffers... [0.168s] Loading trace points... Warning: resident size (114922417414) exceeds memory limit. [0.069s] Sorting trace points... [6.374s] Computing alignments... [245.692s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (115058963674) exceeds memory limit. [0s] Sorting trace points... [6.537s] Computing alignments... [242.108s] Deallocating buffers... [0.144s] Loading trace points... [0s] [4114.95s] Deallocating reference... [0.07s] Loading reference sequences... [29.809s] Masking reference... [32.256s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.168s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.722s] Building query seed array... [2.397s] Computing hash join... [5.118s] Masking low complexity seeds... [0.213s] Searching alignments... [2215.48s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.934s] Building query seed array... [2.689s] Computing hash join... [4.897s] Masking low complexity seeds... [0.22s] Searching alignments... [978.795s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.157s] Building query seed array... [2.786s] Computing hash join... [4.914s] Masking low complexity seeds... [0.215s] Searching alignments... [688.935s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.916s] Building query seed array... [2.29s] Computing hash join... [4.933s] Masking low complexity seeds... [0.219s] Searching alignments... [720.156s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.512s] Building query seed array... [2.163s] Computing hash join... [4.877s] Masking low complexity seeds... [0.197s] Searching alignments... [1067.59s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.418s] Building query seed array... [2.385s] Computing hash join... [4.875s] Masking low complexity seeds... [0.201s] Searching alignments... [794.648s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.358s] Building query seed array... [2.569s] Computing hash join... [4.738s] Masking low complexity seeds... [0.204s] Searching alignments... [562.804s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.971s] Building query seed array... [2.182s] Computing hash join... [4.867s] Masking low complexity seeds... [0.204s] Searching alignments... [594.038s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.406s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.649s] Sorting trace points... [7.759s] Computing alignments... [219.361s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (113370410376) exceeds memory limit. [0.038s] Sorting trace points... [7.885s] Computing alignments... [220.26s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (114063496986) exceeds memory limit. [0.115s] Sorting trace points... [5.731s] Computing alignments... [222.837s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (115734995286) exceeds memory limit. [0.06s] Sorting trace points... [6.137s] Computing alignments... [229.299s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (115654604451) exceeds memory limit. [0.091s] Sorting trace points... [6.216s] Computing alignments... [223.343s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114087727626) exceeds memory limit. [0.08s] Sorting trace points... [7.49s] Computing alignments... [221.492s] Deallocating buffers... [0.121s] Loading trace points... Warning: resident size (114260987556) exceeds memory limit. [0.064s] Sorting trace points... [6.2s] Computing alignments... [223.31s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (115940313216) exceeds memory limit. [0.059s] Sorting trace points... [5.986s] Computing alignments... [230.036s] Deallocating buffers... [0.141s] Loading trace points... Warning: resident size (115508543091) exceeds memory limit. [0.089s] Sorting trace points... [7.83s] Computing alignments... [220.407s] Deallocating buffers... [0.112s] Loading trace points... Warning: resident size (113967376671) exceeds memory limit. [0.065s] Sorting trace points... [7.858s] Computing alignments... [223.231s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (114899257176) exceeds memory limit. [0.11s] Sorting trace points... [7.994s] Computing alignments... [224.469s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (116181858741) exceeds memory limit. [0.046s] Sorting trace points... [7.761s] Computing alignments... [229.373s] Deallocating buffers... [0.124s] Loading trace points... Warning: resident size (115303945491) exceeds memory limit. [0.039s] Sorting trace points... [5.846s] Computing alignments... [219.96s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (114368476086) exceeds memory limit. [0.075s] Sorting trace points... [8.026s] Computing alignments... [221.236s] Deallocating buffers... [0.128s] Loading trace points... Warning: resident size (114721817076) exceeds memory limit. [0.048s] Sorting trace points... [6.567s] Computing alignments... [222.026s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (114859193076) exceeds memory limit. [0s] Sorting trace points... [7.897s] Computing alignments... [219.908s] Deallocating buffers... [0.149s] Loading trace points... [0s] [3725.57s] Deallocating reference... [0.061s] Loading reference sequences... [30.332s] Masking reference... [31.162s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.149s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.091s] Building query seed array... [2.378s] Computing hash join... [4.989s] Masking low complexity seeds... [0.216s] Searching alignments... [2213.54s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.297s] Building query seed array... [2.742s] Computing hash join... [5.026s] Masking low complexity seeds... [0.215s] Searching alignments... [961.602s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.662s] Building query seed array... [2.782s] Computing hash join... [4.873s] Masking low complexity seeds... [0.212s] Searching alignments... [693.266s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.07s] Building query seed array... [2.409s] Computing hash join... [5.049s] Masking low complexity seeds... [0.216s] Searching alignments... [714.678s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.301s] Building query seed array... [2.104s] Computing hash join... [4.854s] Masking low complexity seeds... [0.199s] Searching alignments... [1082.75s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.564s] Building query seed array... [2.395s] Computing hash join... [4.784s] Masking low complexity seeds... [0.202s] Searching alignments... [798.756s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.225s] Building query seed array... [2.573s] Computing hash join... [4.904s] Masking low complexity seeds... [0.2s] Searching alignments... [567.39s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.723s] Building query seed array... [2.111s] Computing hash join... [4.783s] Masking low complexity seeds... [0.2s] Searching alignments... [585.313s] Deallocating memory... [0s] Deallocating buffers... [0.123s] Clearing query masking... [1.513s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [39.139s] Sorting trace points... [6.64s] Computing alignments... [266.859s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (113760512766) exceeds memory limit. [0.06s] Sorting trace points... [6.702s] Computing alignments... [267.714s] Deallocating buffers... [0.138s] Loading trace points... Warning: resident size (114457966431) exceeds memory limit. [0.056s] Sorting trace points... [6.604s] Computing alignments... [269.268s] Deallocating buffers... [0.116s] Loading trace points... Warning: resident size (116140771101) exceeds memory limit. [0.075s] Sorting trace points... [5.896s] Computing alignments... [278.666s] Deallocating buffers... [0.156s] Loading trace points... Warning: resident size (116061658041) exceeds memory limit. [0.056s] Sorting trace points... [5.649s] Computing alignments... [275.542s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (114487711806) exceeds memory limit. [0.053s] Sorting trace points... [5.68s] Computing alignments... [269.058s] Deallocating buffers... [0.135s] Loading trace points... Warning: resident size (114658720536) exceeds memory limit. [0.052s] Sorting trace points... [6.469s] Computing alignments... [272.78s] Deallocating buffers... [0.134s] Loading trace points... Warning: resident size (116345323251) exceeds memory limit. [0.06s] Sorting trace points... [8.112s] Computing alignments... [279.232s] Deallocating buffers... [0.166s] Loading trace points... Warning: resident size (115911094431) exceeds memory limit. [0.048s] Sorting trace points... [5.899s] Computing alignments... [266.489s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (114361075851) exceeds memory limit. [0.075s] Sorting trace points... [6.556s] Computing alignments... [274.304s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (115299978531) exceeds memory limit. [0.064s] Sorting trace points... [6.432s] Computing alignments... [270.189s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (116588239881) exceeds memory limit. [0.442s] Sorting trace points... [5.906s] Computing alignments... [280.286s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (115706546016) exceeds memory limit. [0.101s] Sorting trace points... [5.701s] Computing alignments... [265.838s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (114767611656) exceeds memory limit. [0.081s] Sorting trace points... [7.934s] Computing alignments... [268.359s] Deallocating buffers... [0.165s] Loading trace points... Warning: resident size (115124020296) exceeds memory limit. [0.079s] Sorting trace points... [5.969s] Computing alignments... [268.811s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (115262026656) exceeds memory limit. [0s] Sorting trace points... [7.011s] Computing alignments... [266.065s] Deallocating buffers... [0.139s] Loading trace points... [0s] [4485.45s] Deallocating reference... [0.089s] Loading reference sequences... [240.517s] Masking reference... [31.574s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.462s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.125s] Building query seed array... [2.432s] Computing hash join... [5.036s] Masking low complexity seeds... [0.206s] Searching alignments... [2208.07s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.559s] Building query seed array... [2.633s] Computing hash join... [4.974s] Masking low complexity seeds... [0.208s] Searching alignments... [972.523s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.263s] Building query seed array... [2.823s] Computing hash join... [4.951s] Masking low complexity seeds... [0.208s] Searching alignments... [689.684s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.994s] Building query seed array... [2.304s] Computing hash join... [4.843s] Masking low complexity seeds... [0.213s] Searching alignments... [720.44s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.944s] Building query seed array... [2.169s] Computing hash join... [4.742s] Masking low complexity seeds... [0.196s] Searching alignments... [1055.7s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.989s] Building query seed array... [2.463s] Computing hash join... [4.76s] Masking low complexity seeds... [0.206s] Searching alignments... [804.15s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.527s] Building query seed array... [2.528s] Computing hash join... [4.912s] Masking low complexity seeds... [0.199s] Searching alignments... [568.674s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.9s] Building query seed array... [2.2s] Computing hash join... [4.82s] Masking low complexity seeds... [0.197s] Searching alignments... [591.109s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.521s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.861s] Sorting trace points... [7.784s] Computing alignments... [258.366s] Deallocating buffers... [0.132s] Loading trace points... Warning: resident size (114105955383) exceeds memory limit. [0.079s] Sorting trace points... [7.959s] Computing alignments... [256.763s] Deallocating buffers... [0.13s] Loading trace points... Warning: resident size (114808765188) exceeds memory limit. [0.065s] Sorting trace points... [5.781s] Computing alignments... [259.527s] Deallocating buffers... [0.14s] Loading trace points... Warning: resident size (116500707783) exceeds memory limit. [0.042s] Sorting trace points... [7.809s] Computing alignments... [269.748s] Deallocating buffers... [0.136s] Loading trace points... Warning: resident size (116417806398) exceeds memory limit. [0.085s] Sorting trace points... [7.848s] Computing alignments... [265.964s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114836690313) exceeds memory limit. [0.054s] Sorting trace points... [6.655s] Computing alignments... [260.872s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (115010830353) exceeds memory limit. [0.055s] Sorting trace points... [7.611s] Computing alignments... [263.274s] Deallocating buffers... [0.16s] Loading trace points... Warning: resident size (116705262633) exceeds memory limit. [0.043s] Sorting trace points... [6.774s] Computing alignments... [267.919s] Deallocating buffers... [0.148s] Loading trace points... Warning: resident size (116269491498) exceeds memory limit. [0.069s] Sorting trace points... [6.799s] Computing alignments... [257.422s] Deallocating buffers... [0.113s] Loading trace points... Warning: resident size (114710698413) exceeds memory limit. [0.001s] Sorting trace points... [6.612s] Computing alignments... [265.778s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (115654506738) exceeds memory limit. [0.083s] Sorting trace points... [6.702s] Computing alignments... [262.256s] Deallocating buffers... [0.143s] Loading trace points... Warning: resident size (116953091898) exceeds memory limit. [0.063s] Sorting trace points... [6.325s] Computing alignments... [269.005s] Deallocating buffers... [0.146s] Loading trace points... Warning: resident size (116067234978) exceeds memory limit. [0.079s] Sorting trace points... [6.501s] Computing alignments... [257.5s] Deallocating buffers... [0.154s] Loading trace points... Warning: resident size (115122216468) exceeds memory limit. [0.061s] Sorting trace points... [5.951s] Computing alignments... [259.218s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (115480917063) exceeds memory limit. [0.083s] Sorting trace points... [5.631s] Computing alignments... [259.9s] Deallocating buffers... [0.151s] Loading trace points... Warning: resident size (115620292023) exceeds memory limit. [0s] Sorting trace points... [5.592s] Computing alignments... [256.819s] Deallocating buffers... [0.136s] Loading trace points... [0s] [4340.77s] Deallocating reference... [0.063s] Loading reference sequences... [30.553s] Masking reference... [31.575s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.713s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.238s] Building query seed array... [2.486s] Computing hash join... [5.045s] Masking low complexity seeds... [0.213s] Searching alignments... [2219.3s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.272s] Building query seed array... [2.638s] Computing hash join... [4.971s] Masking low complexity seeds... [0.214s] Searching alignments... [972.388s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.324s] Building query seed array... [2.826s] Computing hash join... [4.939s] Masking low complexity seeds... [0.214s] Searching alignments... [691.601s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.232s] Building query seed array... [2.293s] Computing hash join... [4.937s] Masking low complexity seeds... [0.211s] Searching alignments... [714.595s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.039s] Building query seed array... [2.092s] Computing hash join... [4.776s] Masking low complexity seeds... [0.19s] Searching alignments... [1071.66s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.223s] Building query seed array... [2.435s] Computing hash join... [4.866s] Masking low complexity seeds... [0.195s] Searching alignments... [799.487s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.59s] Building query seed array... [2.521s] Computing hash join... [4.742s] Masking low complexity seeds... [0.198s] Searching alignments... [567.442s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.155s] Building query seed array... [2.141s] Computing hash join... [4.814s] Masking low complexity seeds... [0.198s] Searching alignments... [585.281s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.537s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.681s] Sorting trace points... [7.815s] Computing alignments... [241.473s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (113462272534) exceeds memory limit. [0.059s] Sorting trace points... [7.779s] Computing alignments... [242.192s] Deallocating buffers... [0.12s] Loading trace points... Warning: resident size (114156305644) exceeds memory limit. [0.079s] Sorting trace points... [7.784s] Computing alignments... [243.34s] Deallocating buffers... [0.097s] Loading trace points... Warning: resident size (115824019009) exceeds memory limit. [0.065s] Sorting trace points... [6.509s] Computing alignments... [251.835s] Deallocating buffers... [0.142s] Loading trace points... Warning: resident size (115746523114) exceeds memory limit. [0.037s] Sorting trace points... [6.618s] Computing alignments... [247.169s] Deallocating buffers... [0.125s] Loading trace points... Warning: resident size (114181901749) exceeds memory limit. [0.062s] Sorting trace points... [6.825s] Computing alignments... [244.313s] Deallocating buffers... [0.133s] Loading trace points... Warning: resident size (114352376959) exceeds memory limit. [0.002s] Sorting trace points... [8.105s] Computing alignments... [246.267s] Deallocating buffers... [0.126s] Loading trace points... Warning: resident size (116034510619) exceeds memory limit. [0.061s] Sorting trace points... [7.851s] Computing alignments... [251.467s] Deallocating buffers... [0.159s] Loading trace points... Warning: resident size (115603600279) exceeds memory limit. [0.044s] Sorting trace points... [7.358s] Computing alignments... [241.266s] Deallocating buffers... [0.129s] Loading trace points... Warning: resident size (114060626749) exceeds memory limit. [0.079s] Sorting trace points... [7.519s] Computing alignments... [249.077s] Deallocating buffers... [0.145s] Loading trace points... Warning: resident size (114992811469) exceeds memory limit. [0.045s] Sorting trace points... [6.408s] Computing alignments... [247.871s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (116272143589) exceeds memory limit. [0.046s] Sorting trace points... [8.381s] Computing alignments... [251.811s] Deallocating buffers... [0.149s] Loading trace points... Warning: resident size (115392002374) exceeds memory limit. [0.066s] Sorting trace points... [5.623s] Computing alignments... [242.713s] Deallocating buffers... [0.139s] Loading trace points... Warning: resident size (114459932404) exceeds memory limit. [0.088s] Sorting trace points... [6.598s] Computing alignments... [243.905s] Deallocating buffers... [0.155s] Loading trace points... Warning: resident size (114814763074) exceeds memory limit. [0.059s] Sorting trace points... [6.017s] Computing alignments... [244.397s] Deallocating buffers... [0.137s] Loading trace points... Warning: resident size (114951775729) exceeds memory limit. [0s] Sorting trace points... [5.547s] Computing alignments... [242.322s] Deallocating buffers... [0.128s] Loading trace points... [0s] [4085.89s] Deallocating reference... [0.062s] Loading reference sequences... [23.939s] Masking reference... [24.993s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.008s] Building reference histograms... [26.33s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.42s] Building query seed array... [2.339s] Computing hash join... [4.197s] Masking low complexity seeds... [0.199s] Searching alignments... [1770.5s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.528s] Building query seed array... [2.639s] Computing hash join... [4.173s] Masking low complexity seeds... [0.213s] Searching alignments... [773.541s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.893s] Building query seed array... [2.935s] Computing hash join... [4.168s] Masking low complexity seeds... [0.214s] Searching alignments... [556.918s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.055s] Building query seed array... [2.299s] Computing hash join... [4.119s] Masking low complexity seeds... [0.204s] Searching alignments... [580.228s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.08s] Building query seed array... [2.075s] Computing hash join... [3.941s] Masking low complexity seeds... [0.188s] Searching alignments... [846.32s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.981s] Building query seed array... [2.464s] Computing hash join... [4.109s] Masking low complexity seeds... [0.189s] Searching alignments... [645.845s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.751s] Building query seed array... [2.546s] Computing hash join... [4.087s] Masking low complexity seeds... [0.186s] Searching alignments... [456.416s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.188s] Building query seed array... [2.157s] Computing hash join... [4.009s] Masking low complexity seeds... [0.186s] Searching alignments... [473.053s] Deallocating memory... [0s] Deallocating buffers... [0.119s] Clearing query masking... [1.51s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [31.629s] Sorting trace points... [6.221s] Computing alignments... [188.009s] Deallocating buffers... [0.104s] Loading trace points... [0.056s] Sorting trace points... [6.558s] Computing alignments... [188.212s] Deallocating buffers... [0.105s] Loading trace points... [0.063s] Sorting trace points... [6.126s] Computing alignments... [190.53s] Deallocating buffers... [0.103s] Loading trace points... [0.072s] Sorting trace points... [5.427s] Computing alignments... [196.442s] Deallocating buffers... [0.098s] Loading trace points... [0.083s] Sorting trace points... [4.479s] Computing alignments... [192.338s] Deallocating buffers... [0.12s] Loading trace points... [0.078s] Sorting trace points... [5.563s] Computing alignments... [190.342s] Deallocating buffers... [0.103s] Loading trace points... [0.059s] Sorting trace points... [5.213s] Computing alignments... [191.346s] Deallocating buffers... [0.104s] Loading trace points... [0.064s] Sorting trace points... [4.847s] Computing alignments... [196.39s] Deallocating buffers... [0.113s] Loading trace points... [0.054s] Sorting trace points... [4.594s] Computing alignments... [187.816s] Deallocating buffers... [0.114s] Loading trace points... [0.071s] Sorting trace points... [4.53s] Computing alignments... [192.647s] Deallocating buffers... [0.107s] Loading trace points... [0.091s] Sorting trace points... [5.826s] Computing alignments... [191.093s] Deallocating buffers... [0.11s] Loading trace points... [0.088s] Sorting trace points... [6.176s] Computing alignments... [195.908s] Deallocating buffers... [0.109s] Loading trace points... [0.051s] Sorting trace points... [5.723s] Computing alignments... [187.553s] Deallocating buffers... [0.107s] Loading trace points... [0.072s] Sorting trace points... [6.523s] Computing alignments... [188.028s] Deallocating buffers... [0.104s] Loading trace points... [0.051s] Sorting trace points... [6.315s] Computing alignments... [189.408s] Deallocating buffers... [0.106s] Loading trace points... [0s] Sorting trace points... [5.298s] Computing alignments... [187.154s] Deallocating buffers... [0.111s] Loading trace points... [0s] [3177.03s] Deallocating reference... [0.05s] Loading reference sequences... [0.087s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [11233.7s] [11233.7s] Deallocating queries... [0.058s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.11s] [4.169s] Closing the database... [0s] Cleaning up... [0s] Total time = 177882s Reported 17467435416 pairwise alignments, 17467435416 HSPs. 7114414 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-24.trimmed.R2.fastq.gz complete: CH07-24.trimmed.R2.blastx.meganized.daa Now MEGANizing CH07-24.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-24.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (182.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.9s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (26,987.6s) Total reads: 7,114,414 With hits: 7,114,414 Alignments: 11,619,001,015 Assig. Taxonomy: 4,740,169 Assig. SEED: 112,923 Assig. EGGNOG: 24,881 Assig. GTDB: 239,450 Assig. EC: 1,014,486 Assig. INTERPRO2GO: 2,492,126 MinSupport set to: 3557 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 6,685 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (32.4s) Min-supp. changes: 4,570 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.5s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 162 Class. SEED: 485 Class. EGGNOG: 1,633 Class. GTDB: 45 Class. EC: 2,393 Class. INTERPRO2GO: 8,782 Total time: 27,221s Peak memory: 32.5 of 195.3G MEGANization of CH07-24.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-02.trimmed.R1.fastq.gz... 074d5aac00826710799b52a74614d346 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-02.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-02.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.292s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.721s] Opening the output file... [0s] Loading query sequences... [89.776s] Masking queries... [23.853s] Algorithm: Double-indexed Building query histograms... [18.692s] Loading reference sequences... [32.956s] Masking reference... [31.229s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.009s] Building reference histograms... [31.939s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.524s] Building query seed array... [2.07s] Computing hash join... [5.05s] Masking low complexity seeds... [0.2s] Searching alignments... [320.258s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.306s] Building query seed array... [2.425s] Computing hash join... [4.946s] Masking low complexity seeds... [0.207s] Searching alignments... [135.515s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.204s] Building query seed array... [2.442s] Computing hash join... [4.998s] Masking low complexity seeds... [0.213s] Searching alignments... [107.2s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.812s] Building query seed array... [1.977s] Computing hash join... [4.99s] Masking low complexity seeds... [0.202s] Searching alignments... [102.264s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.138s] Building query seed array... [1.859s] Computing hash join... [4.733s] Masking low complexity seeds... [0.191s] Searching alignments... [146.794s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.529s] Building query seed array... [2.137s] Computing hash join... [4.654s] Masking low complexity seeds... [0.188s] Searching alignments... [116.444s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.425s] Building query seed array... [2.262s] Computing hash join... [4.72s] Masking low complexity seeds... [0.185s] Searching alignments... [88.533s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.836s] Building query seed array... [1.928s] Computing hash join... [4.771s] Masking low complexity seeds... [0.189s] Searching alignments... [88.45s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.482s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.456s] Sorting trace points... [1.375s] Computing alignments... [35.717s] Deallocating buffers... [0.024s] Loading trace points... [0.254s] Sorting trace points... [1.334s] Computing alignments... [36.678s] Deallocating buffers... [0.025s] Loading trace points... [0.049s] Sorting trace points... [1.04s] Computing alignments... [36.99s] Deallocating buffers... [0.026s] Loading trace points... [0.067s] Sorting trace points... [1.499s] Computing alignments... [38.864s] Deallocating buffers... [0.031s] Loading trace points... [0.18s] Sorting trace points... [1.194s] Computing alignments... [35.98s] Deallocating buffers... [0.025s] Loading trace points... [0.128s] Sorting trace points... [1.028s] Computing alignments... [36.406s] Deallocating buffers... [0.026s] Loading trace points... [0.097s] Sorting trace points... [1.365s] Computing alignments... [37.487s] Deallocating buffers... [0.029s] Loading trace points... [0.06s] Sorting trace points... [1.308s] Computing alignments... [38.36s] Deallocating buffers... [0.025s] Loading trace points... [0.057s] Sorting trace points... [1.35s] Computing alignments... [37.187s] Deallocating buffers... [0.021s] Loading trace points... [0.37s] Sorting trace points... [1.38s] Computing alignments... [37.193s] Deallocating buffers... [0.025s] Loading trace points... [0.074s] Sorting trace points... [1.384s] Computing alignments... [37.077s] Deallocating buffers... [0.026s] Loading trace points... [0.084s] Sorting trace points... [1.058s] Computing alignments... [38.648s] Deallocating buffers... [0.029s] Loading trace points... [0.059s] Sorting trace points... [1.01s] Computing alignments... [36.857s] Deallocating buffers... [0.021s] Loading trace points... [0.086s] Sorting trace points... [1.286s] Computing alignments... [35.916s] Deallocating buffers... [0.025s] Loading trace points... [0.058s] Sorting trace points... [1.303s] Computing alignments... [36.763s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.037s] Computing alignments... [37.315s] Deallocating buffers... [0.029s] Loading trace points... [0s] [622.997s] Deallocating reference... [0.075s] Loading reference sequences... [29.91s] Masking reference... [30.9s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [33.14s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.261s] Building query seed array... [2.089s] Computing hash join... [4.955s] Masking low complexity seeds... [0.197s] Searching alignments... [319.556s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.9s] Building query seed array... [2.381s] Computing hash join... [4.849s] Masking low complexity seeds... [0.197s] Searching alignments... [131.842s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.36s] Building query seed array... [2.446s] Computing hash join... [4.945s] Masking low complexity seeds... [0.212s] Searching alignments... [104.229s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.207s] Building query seed array... [2.007s] Computing hash join... [4.945s] Masking low complexity seeds... [0.201s] Searching alignments... [101.165s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.793s] Building query seed array... [1.892s] Computing hash join... [4.716s] Masking low complexity seeds... [0.197s] Searching alignments... [143.773s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.718s] Building query seed array... [2.125s] Computing hash join... [4.786s] Masking low complexity seeds... [0.194s] Searching alignments... [114.005s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.646s] Building query seed array... [2.283s] Computing hash join... [4.722s] Masking low complexity seeds... [0.19s] Searching alignments... [87.887s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.13s] Building query seed array... [1.925s] Computing hash join... [4.738s] Masking low complexity seeds... [0.189s] Searching alignments... [86.951s] Deallocating memory... [0s] Deallocating buffers... [0.132s] Clearing query masking... [1.548s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.474s] Sorting trace points... [1.382s] Computing alignments... [38.716s] Deallocating buffers... [0.033s] Loading trace points... [0.077s] Sorting trace points... [1.33s] Computing alignments... [39.436s] Deallocating buffers... [0.03s] Loading trace points... [0.065s] Sorting trace points... [1.35s] Computing alignments... [40.144s] Deallocating buffers... [0.032s] Loading trace points... [0.053s] Sorting trace points... [1.499s] Computing alignments... [41.616s] Deallocating buffers... [0.031s] Loading trace points... [0.079s] Sorting trace points... [1.151s] Computing alignments... [38.746s] Deallocating buffers... [0.029s] Loading trace points... [0.059s] Sorting trace points... [1.172s] Computing alignments... [39.302s] Deallocating buffers... [0.027s] Loading trace points... [0.909s] Sorting trace points... [1.382s] Computing alignments... [40.488s] Deallocating buffers... [0.032s] Loading trace points... [0.067s] Sorting trace points... [1.412s] Computing alignments... [41.753s] Deallocating buffers... [0.028s] Loading trace points... [0.063s] Sorting trace points... [1.342s] Computing alignments... [40.183s] Deallocating buffers... [0.035s] Loading trace points... [0.136s] Sorting trace points... [1.321s] Computing alignments... [39.593s] Deallocating buffers... [0.026s] Loading trace points... [0.177s] Sorting trace points... [1.382s] Computing alignments... [39.683s] Deallocating buffers... [0.035s] Loading trace points... [0.064s] Sorting trace points... [1.058s] Computing alignments... [41.089s] Deallocating buffers... [0.032s] Loading trace points... [0.085s] Sorting trace points... [1.396s] Computing alignments... [38.617s] Deallocating buffers... [0.026s] Loading trace points... [0.074s] Sorting trace points... [1.336s] Computing alignments... [38.139s] Deallocating buffers... [0.028s] Loading trace points... [0.06s] Sorting trace points... [1.269s] Computing alignments... [39.524s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.377s] Computing alignments... [39.61s] Deallocating buffers... [0.027s] Loading trace points... [0s] [667.827s] Deallocating reference... [0.081s] Loading reference sequences... [29.523s] Masking reference... [32.185s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.285s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.279s] Building query seed array... [2.096s] Computing hash join... [5.099s] Masking low complexity seeds... [0.204s] Searching alignments... [322.888s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.188s] Building query seed array... [2.371s] Computing hash join... [4.966s] Masking low complexity seeds... [0.202s] Searching alignments... [134.166s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.439s] Building query seed array... [2.423s] Computing hash join... [4.892s] Masking low complexity seeds... [0.202s] Searching alignments... [106.237s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.585s] Building query seed array... [2.087s] Computing hash join... [4.807s] Masking low complexity seeds... [0.201s] Searching alignments... [103.642s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.968s] Building query seed array... [1.902s] Computing hash join... [4.782s] Masking low complexity seeds... [0.202s] Searching alignments... [145.845s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.218s] Building query seed array... [2.157s] Computing hash join... [4.711s] Masking low complexity seeds... [0.188s] Searching alignments... [118.319s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.561s] Building query seed array... [2.255s] Computing hash join... [4.77s] Masking low complexity seeds... [0.196s] Searching alignments... [88.35s] Deallocating memory... [0.003s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.902s] Building query seed array... [1.879s] Computing hash join... [4.784s] Masking low complexity seeds... [0.191s] Searching alignments... [89.549s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.497s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.427s] Sorting trace points... [1.362s] Computing alignments... [37.443s] Deallocating buffers... [0.028s] Loading trace points... [0.056s] Sorting trace points... [1.376s] Computing alignments... [39.177s] Deallocating buffers... [0.034s] Loading trace points... [0.071s] Sorting trace points... [1.103s] Computing alignments... [39.619s] Deallocating buffers... [0.026s] Loading trace points... [0.058s] Sorting trace points... [1.161s] Computing alignments... [40.997s] Deallocating buffers... [0.034s] Loading trace points... [0.053s] Sorting trace points... [1.057s] Computing alignments... [38.13s] Deallocating buffers... [0.026s] Loading trace points... [0.099s] Sorting trace points... [1.122s] Computing alignments... [38.989s] Deallocating buffers... [0.026s] Loading trace points... [0.076s] Sorting trace points... [1.332s] Computing alignments... [39.676s] Deallocating buffers... [0.02s] Loading trace points... [0.076s] Sorting trace points... [1.414s] Computing alignments... [41.093s] Deallocating buffers... [0.031s] Loading trace points... [0.055s] Sorting trace points... [1.403s] Computing alignments... [39.652s] Deallocating buffers... [0.025s] Loading trace points... [0.074s] Sorting trace points... [1.331s] Computing alignments... [39.163s] Deallocating buffers... [0.024s] Loading trace points... [0.049s] Sorting trace points... [1.2s] Computing alignments... [39.059s] Deallocating buffers... [0.026s] Loading trace points... [0.061s] Sorting trace points... [1.393s] Computing alignments... [40.456s] Deallocating buffers... [0.03s] Loading trace points... [0.067s] Sorting trace points... [1.398s] Computing alignments... [38.074s] Deallocating buffers... [0.026s] Loading trace points... [0.074s] Sorting trace points... [1.319s] Computing alignments... [38.047s] Deallocating buffers... [0.027s] Loading trace points... [0.055s] Sorting trace points... [1.417s] Computing alignments... [39.271s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.013s] Computing alignments... [38.817s] Deallocating buffers... [0.03s] Loading trace points... [0s] [656.962s] Deallocating reference... [0.074s] Loading reference sequences... [29.663s] Masking reference... [30.916s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.011s] Building reference histograms... [33.07s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.252s] Building query seed array... [2.087s] Computing hash join... [4.955s] Masking low complexity seeds... [0.202s] Searching alignments... [319.278s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.667s] Building query seed array... [2.366s] Computing hash join... [4.841s] Masking low complexity seeds... [0.206s] Searching alignments... [137.239s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.121s] Building query seed array... [2.4s] Computing hash join... [4.873s] Masking low complexity seeds... [0.195s] Searching alignments... [106.257s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.132s] Building query seed array... [2.019s] Computing hash join... [4.917s] Masking low complexity seeds... [0.21s] Searching alignments... [103.44s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.011s] Building query seed array... [1.797s] Computing hash join... [4.794s] Masking low complexity seeds... [0.191s] Searching alignments... [145.806s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.24s] Building query seed array... [2.16s] Computing hash join... [4.727s] Masking low complexity seeds... [0.191s] Searching alignments... [114.179s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.445s] Building query seed array... [2.319s] Computing hash join... [4.651s] Masking low complexity seeds... [0.198s] Searching alignments... [88.862s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.947s] Building query seed array... [1.893s] Computing hash join... [4.756s] Masking low complexity seeds... [0.193s] Searching alignments... [88.993s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.475s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.005s] Sorting trace points... [1.344s] Computing alignments... [40.095s] Deallocating buffers... [0.027s] Loading trace points... [0.042s] Sorting trace points... [1.371s] Computing alignments... [40.823s] Deallocating buffers... [0.033s] Loading trace points... [0.042s] Sorting trace points... [1.063s] Computing alignments... [41.303s] Deallocating buffers... [0.029s] Loading trace points... [0.06s] Sorting trace points... [1.094s] Computing alignments... [42.83s] Deallocating buffers... [0.029s] Loading trace points... [0.093s] Sorting trace points... [0.994s] Computing alignments... [40.144s] Deallocating buffers... [0.027s] Loading trace points... [0.061s] Sorting trace points... [1.069s] Computing alignments... [40.326s] Deallocating buffers... [0.027s] Loading trace points... [0.062s] Sorting trace points... [1.378s] Computing alignments... [41.74s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.109s] Computing alignments... [43.13s] Deallocating buffers... [0.021s] Loading trace points... [0.057s] Sorting trace points... [1.142s] Computing alignments... [41.814s] Deallocating buffers... [0.028s] Loading trace points... [0.002s] Sorting trace points... [1.352s] Computing alignments... [40.849s] Deallocating buffers... [0.027s] Loading trace points... [0.059s] Sorting trace points... [1.268s] Computing alignments... [40.78s] Deallocating buffers... [0.026s] Loading trace points... [0.085s] Sorting trace points... [1.456s] Computing alignments... [42.377s] Deallocating buffers... [0.027s] Loading trace points... [0.044s] Sorting trace points... [1.386s] Computing alignments... [39.446s] Deallocating buffers... [0.026s] Loading trace points... [0.058s] Sorting trace points... [1.323s] Computing alignments... [39.35s] Deallocating buffers... [0.023s] Loading trace points... [0.054s] Sorting trace points... [1.044s] Computing alignments... [40.919s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.395s] Computing alignments... [40.366s] Deallocating buffers... [0.03s] Loading trace points... [0s] [685.421s] Deallocating reference... [0.084s] Loading reference sequences... [245.715s] Masking reference... [30.989s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.01s] Building reference histograms... [32.278s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.105s] Building query seed array... [2.195s] Computing hash join... [4.925s] Masking low complexity seeds... [0.203s] Searching alignments... [319.177s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.096s] Building query seed array... [2.465s] Computing hash join... [4.926s] Masking low complexity seeds... [0.205s] Searching alignments... [133.395s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.283s] Building query seed array... [2.47s] Computing hash join... [4.906s] Masking low complexity seeds... [0.209s] Searching alignments... [104.505s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.337s] Building query seed array... [1.963s] Computing hash join... [4.86s] Masking low complexity seeds... [0.211s] Searching alignments... [100.917s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.079s] Building query seed array... [1.846s] Computing hash join... [4.81s] Masking low complexity seeds... [0.189s] Searching alignments... [151.409s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.38s] Building query seed array... [2.113s] Computing hash join... [4.697s] Masking low complexity seeds... [0.191s] Searching alignments... [116.207s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.912s] Building query seed array... [2.183s] Computing hash join... [4.781s] Masking low complexity seeds... [0.19s] Searching alignments... [86.932s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.143s] Building query seed array... [1.916s] Computing hash join... [4.767s] Masking low complexity seeds... [0.191s] Searching alignments... [91.5s] Deallocating memory... [0.003s] Deallocating buffers... [0.138s] Clearing query masking... [1.525s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.474s] Sorting trace points... [1.404s] Computing alignments... [42.078s] Deallocating buffers... [0.045s] Loading trace points... [0.073s] Sorting trace points... [1.343s] Computing alignments... [42.662s] Deallocating buffers... [0.036s] Loading trace points... [0.126s] Sorting trace points... [1.184s] Computing alignments... [43.216s] Deallocating buffers... [0.047s] Loading trace points... [0.086s] Sorting trace points... [1.496s] Computing alignments... [45.096s] Deallocating buffers... [0.043s] Loading trace points... [0.002s] Sorting trace points... [1.4s] Computing alignments... [41.923s] Deallocating buffers... [0.038s] Loading trace points... [0.056s] Sorting trace points... [1.27s] Computing alignments... [42.7s] Deallocating buffers... [0.038s] Loading trace points... [0.074s] Sorting trace points... [1.231s] Computing alignments... [43.581s] Deallocating buffers... [0.05s] Loading trace points... [0.076s] Sorting trace points... [1.086s] Computing alignments... [45.415s] Deallocating buffers... [0.039s] Loading trace points... [0.081s] Sorting trace points... [1.262s] Computing alignments... [43.817s] Deallocating buffers... [0.046s] Loading trace points... [0.079s] Sorting trace points... [1.06s] Computing alignments... [43.258s] Deallocating buffers... [0.042s] Loading trace points... [0.076s] Sorting trace points... [1.391s] Computing alignments... [42.539s] Deallocating buffers... [0.038s] Loading trace points... [0.064s] Sorting trace points... [1.162s] Computing alignments... [44.575s] Deallocating buffers... [0.048s] Loading trace points... [0.075s] Sorting trace points... [1.139s] Computing alignments... [41.355s] Deallocating buffers... [0.043s] Loading trace points... [0.062s] Sorting trace points... [1.029s] Computing alignments... [42.037s] Deallocating buffers... [0.045s] Loading trace points... [0.089s] Sorting trace points... [1.112s] Computing alignments... [43.572s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.092s] Computing alignments... [42.518s] Deallocating buffers... [0.047s] Loading trace points... [0s] [719.308s] Deallocating reference... [0.083s] Loading reference sequences... [30.91s] Masking reference... [30.873s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.01s] Building reference histograms... [32.613s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.142s] Building query seed array... [2.049s] Computing hash join... [4.995s] Masking low complexity seeds... [0.204s] Searching alignments... [313.639s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.517s] Building query seed array... [2.32s] Computing hash join... [4.953s] Masking low complexity seeds... [0.203s] Searching alignments... [133.885s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.387s] Building query seed array... [2.439s] Computing hash join... [4.884s] Masking low complexity seeds... [0.203s] Searching alignments... [103.792s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.091s] Building query seed array... [2.046s] Computing hash join... [4.904s] Masking low complexity seeds... [0.201s] Searching alignments... [101.725s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.866s] Building query seed array... [1.903s] Computing hash join... [4.771s] Masking low complexity seeds... [0.194s] Searching alignments... [143.666s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.331s] Building query seed array... [2.182s] Computing hash join... [4.751s] Masking low complexity seeds... [0.196s] Searching alignments... [112.542s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.276s] Building query seed array... [2.097s] Computing hash join... [4.697s] Masking low complexity seeds... [0.189s] Searching alignments... [88.545s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.876s] Building query seed array... [1.914s] Computing hash join... [4.83s] Masking low complexity seeds... [0.197s] Searching alignments... [87.918s] Deallocating memory... [0s] Deallocating buffers... [0.129s] Clearing query masking... [1.543s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.553s] Sorting trace points... [1.339s] Computing alignments... [35.201s] Deallocating buffers... [0.026s] Loading trace points... [0.086s] Sorting trace points... [1.343s] Computing alignments... [36.581s] Deallocating buffers... [0.029s] Loading trace points... [0.083s] Sorting trace points... [1.361s] Computing alignments... [36.4s] Deallocating buffers... [0.029s] Loading trace points... [0.061s] Sorting trace points... [1.395s] Computing alignments... [38.409s] Deallocating buffers... [0.031s] Loading trace points... [0.069s] Sorting trace points... [1.309s] Computing alignments... [35.549s] Deallocating buffers... [0.025s] Loading trace points... [0.04s] Sorting trace points... [1.316s] Computing alignments... [35.735s] Deallocating buffers... [0.025s] Loading trace points... [0.047s] Sorting trace points... [1.285s] Computing alignments... [36.947s] Deallocating buffers... [0.03s] Loading trace points... [0.063s] Sorting trace points... [1.416s] Computing alignments... [37.807s] Deallocating buffers... [0.027s] Loading trace points... [0.083s] Sorting trace points... [1.301s] Computing alignments... [36.681s] Deallocating buffers... [0.025s] Loading trace points... [0.063s] Sorting trace points... [1.156s] Computing alignments... [36.53s] Deallocating buffers... [0.028s] Loading trace points... [0.71s] Sorting trace points... [1.061s] Computing alignments... [36.966s] Deallocating buffers... [0.027s] Loading trace points... [0.081s] Sorting trace points... [1.417s] Computing alignments... [38.243s] Deallocating buffers... [0.019s] Loading trace points... [0.097s] Sorting trace points... [1.431s] Computing alignments... [36.256s] Deallocating buffers... [0.024s] Loading trace points... [0.061s] Sorting trace points... [1.059s] Computing alignments... [35.282s] Deallocating buffers... [0.024s] Loading trace points... [0.054s] Sorting trace points... [1.199s] Computing alignments... [35.724s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.363s] Computing alignments... [36.162s] Deallocating buffers... [0.018s] Loading trace points... [0s] [614.889s] Deallocating reference... [0.06s] Loading reference sequences... [29.516s] Masking reference... [30.888s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.801s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.125s] Building query seed array... [2.126s] Computing hash join... [4.897s] Masking low complexity seeds... [0.204s] Searching alignments... [317.808s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.318s] Building query seed array... [2.405s] Computing hash join... [4.805s] Masking low complexity seeds... [0.202s] Searching alignments... [133.643s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.254s] Building query seed array... [2.45s] Computing hash join... [4.888s] Masking low complexity seeds... [0.199s] Searching alignments... [104.149s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.896s] Building query seed array... [2.072s] Computing hash join... [4.869s] Masking low complexity seeds... [0.199s] Searching alignments... [102.785s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.986s] Building query seed array... [1.836s] Computing hash join... [4.707s] Masking low complexity seeds... [0.195s] Searching alignments... [142.144s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.324s] Building query seed array... [2.117s] Computing hash join... [4.808s] Masking low complexity seeds... [0.189s] Searching alignments... [114.245s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.519s] Building query seed array... [2.27s] Computing hash join... [4.709s] Masking low complexity seeds... [0.198s] Searching alignments... [86.043s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.936s] Building query seed array... [1.964s] Computing hash join... [4.753s] Masking low complexity seeds... [0.191s] Searching alignments... [89.936s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.488s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.441s] Sorting trace points... [1.369s] Computing alignments... [35.152s] Deallocating buffers... [0.027s] Loading trace points... [0.083s] Sorting trace points... [1.264s] Computing alignments... [35.992s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [1.341s] Computing alignments... [36.204s] Deallocating buffers... [0.025s] Loading trace points... [0.191s] Sorting trace points... [1.08s] Computing alignments... [38.26s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.331s] Computing alignments... [35.407s] Deallocating buffers... [0.029s] Loading trace points... [0.153s] Sorting trace points... [1.35s] Computing alignments... [35.632s] Deallocating buffers... [0.028s] Loading trace points... [0.054s] Sorting trace points... [1.358s] Computing alignments... [36.889s] Deallocating buffers... [0.025s] Loading trace points... [0.064s] Sorting trace points... [1.386s] Computing alignments... [37.869s] Deallocating buffers... [0.025s] Loading trace points... [0.066s] Sorting trace points... [1.387s] Computing alignments... [36.701s] Deallocating buffers... [0.025s] Loading trace points... [0.094s] Sorting trace points... [1.39s] Computing alignments... [36.485s] Deallocating buffers... [0.029s] Loading trace points... [0.058s] Sorting trace points... [1.39s] Computing alignments... [36.587s] Deallocating buffers... [0.024s] Loading trace points... [0.057s] Sorting trace points... [1.42s] Computing alignments... [38.207s] Deallocating buffers... [0.028s] Loading trace points... [0.071s] Sorting trace points... [1.461s] Computing alignments... [36.235s] Deallocating buffers... [0.019s] Loading trace points... [0.085s] Sorting trace points... [1.226s] Computing alignments... [35.147s] Deallocating buffers... [0.025s] Loading trace points... [0.563s] Sorting trace points... [1.359s] Computing alignments... [35.798s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.024s] Computing alignments... [36.276s] Deallocating buffers... [0.027s] Loading trace points... [0s] [613.612s] Deallocating reference... [0.073s] Loading reference sequences... [34.098s] Masking reference... [31.315s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.563s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.352s] Building query seed array... [2.109s] Computing hash join... [4.828s] Masking low complexity seeds... [0.2s] Searching alignments... [315.061s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.632s] Building query seed array... [2.315s] Computing hash join... [4.933s] Masking low complexity seeds... [0.218s] Searching alignments... [134.51s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.501s] Building query seed array... [2.396s] Computing hash join... [4.941s] Masking low complexity seeds... [0.206s] Searching alignments... [104.728s] Deallocating memory... [0.003s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.038s] Building query seed array... [1.986s] Computing hash join... [4.863s] Masking low complexity seeds... [0.203s] Searching alignments... [102.368s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.828s] Building query seed array... [1.872s] Computing hash join... [4.709s] Masking low complexity seeds... [0.189s] Searching alignments... [142.889s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.635s] Building query seed array... [2.113s] Computing hash join... [4.664s] Masking low complexity seeds... [0.193s] Searching alignments... [112.242s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.354s] Building query seed array... [2.194s] Computing hash join... [4.82s] Masking low complexity seeds... [0.196s] Searching alignments... [86.604s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.262s] Building query seed array... [1.856s] Computing hash join... [4.828s] Masking low complexity seeds... [0.19s] Searching alignments... [87.578s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.487s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.492s] Sorting trace points... [1.406s] Computing alignments... [34.136s] Deallocating buffers... [0.021s] Loading trace points... [0.076s] Sorting trace points... [1.364s] Computing alignments... [35.053s] Deallocating buffers... [0.024s] Loading trace points... [0.059s] Sorting trace points... [1.355s] Computing alignments... [35.379s] Deallocating buffers... [0.024s] Loading trace points... [0.057s] Sorting trace points... [1.406s] Computing alignments... [36.911s] Deallocating buffers... [0.026s] Loading trace points... [0.096s] Sorting trace points... [1.304s] Computing alignments... [34.428s] Deallocating buffers... [0.029s] Loading trace points... [0.001s] Sorting trace points... [1.298s] Computing alignments... [34.554s] Deallocating buffers... [0.024s] Loading trace points... [0.064s] Sorting trace points... [1.059s] Computing alignments... [35.674s] Deallocating buffers... [0.028s] Loading trace points... [0.081s] Sorting trace points... [1.383s] Computing alignments... [36.562s] Deallocating buffers... [0.03s] Loading trace points... [0.065s] Sorting trace points... [1.317s] Computing alignments... [35.485s] Deallocating buffers... [0.029s] Loading trace points... [0.075s] Sorting trace points... [1.363s] Computing alignments... [35.718s] Deallocating buffers... [0.03s] Loading trace points... [0.055s] Sorting trace points... [1.313s] Computing alignments... [35.509s] Deallocating buffers... [0.026s] Loading trace points... [0.08s] Sorting trace points... [1.388s] Computing alignments... [36.861s] Deallocating buffers... [0.026s] Loading trace points... [0.09s] Sorting trace points... [1.442s] Computing alignments... [35.159s] Deallocating buffers... [0.025s] Loading trace points... [0.048s] Sorting trace points... [1.378s] Computing alignments... [34.16s] Deallocating buffers... [0.025s] Loading trace points... [0.103s] Sorting trace points... [1.296s] Computing alignments... [34.949s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.32s] Computing alignments... [35.3s] Deallocating buffers... [0.029s] Loading trace points... [0s] [596.186s] Deallocating reference... [0.075s] Loading reference sequences... [29.697s] Masking reference... [32.121s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.198s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.621s] Building query seed array... [2.023s] Computing hash join... [4.991s] Masking low complexity seeds... [0.203s] Searching alignments... [320.064s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.765s] Building query seed array... [2.442s] Computing hash join... [4.915s] Masking low complexity seeds... [0.202s] Searching alignments... [136.009s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.785s] Building query seed array... [2.506s] Computing hash join... [5.006s] Masking low complexity seeds... [0.204s] Searching alignments... [106.925s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.987s] Building query seed array... [2.038s] Computing hash join... [4.891s] Masking low complexity seeds... [0.21s] Searching alignments... [103.538s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.026s] Building query seed array... [1.844s] Computing hash join... [4.815s] Masking low complexity seeds... [0.193s] Searching alignments... [146.795s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.252s] Building query seed array... [2.096s] Computing hash join... [4.707s] Masking low complexity seeds... [0.187s] Searching alignments... [119.613s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.344s] Building query seed array... [2.199s] Computing hash join... [4.801s] Masking low complexity seeds... [0.204s] Searching alignments... [88.956s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.326s] Building query seed array... [1.882s] Computing hash join... [4.799s] Masking low complexity seeds... [0.192s] Searching alignments... [91.248s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.507s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.467s] Sorting trace points... [1.306s] Computing alignments... [40.008s] Deallocating buffers... [0.044s] Loading trace points... [0.085s] Sorting trace points... [1.391s] Computing alignments... [41.505s] Deallocating buffers... [0.035s] Loading trace points... [0.079s] Sorting trace points... [1.081s] Computing alignments... [41.537s] Deallocating buffers... [0.031s] Loading trace points... [0.076s] Sorting trace points... [1.139s] Computing alignments... [43.157s] Deallocating buffers... [0.038s] Loading trace points... [0.069s] Sorting trace points... [1.35s] Computing alignments... [40.521s] Deallocating buffers... [0.038s] Loading trace points... [0.048s] Sorting trace points... [1.073s] Computing alignments... [41.08s] Deallocating buffers... [0.033s] Loading trace points... [0.113s] Sorting trace points... [1.283s] Computing alignments... [41.931s] Deallocating buffers... [0.032s] Loading trace points... [0.111s] Sorting trace points... [1.067s] Computing alignments... [43.447s] Deallocating buffers... [0.031s] Loading trace points... [0.075s] Sorting trace points... [1.207s] Computing alignments... [42.146s] Deallocating buffers... [0.026s] Loading trace points... [0.078s] Sorting trace points... [1.144s] Computing alignments... [41.53s] Deallocating buffers... [0.029s] Loading trace points... [0.051s] Sorting trace points... [1.054s] Computing alignments... [41.29s] Deallocating buffers... [0.03s] Loading trace points... [0.055s] Sorting trace points... [1.421s] Computing alignments... [42.993s] Deallocating buffers... [0.045s] Loading trace points... [0.083s] Sorting trace points... [1.391s] Computing alignments... [39.995s] Deallocating buffers... [0.032s] Loading trace points... [0.054s] Sorting trace points... [1.307s] Computing alignments... [40.456s] Deallocating buffers... [0.031s] Loading trace points... [0.053s] Sorting trace points... [1.322s] Computing alignments... [41.318s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.326s] Computing alignments... [40.895s] Deallocating buffers... [0.044s] Loading trace points... [0s] [692.836s] Deallocating reference... [0.075s] Loading reference sequences... [33.16s] Masking reference... [31.275s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.669s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.605s] Building query seed array... [2.073s] Computing hash join... [4.974s] Masking low complexity seeds... [0.206s] Searching alignments... [321.55s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.275s] Building query seed array... [2.363s] Computing hash join... [4.93s] Masking low complexity seeds... [0.207s] Searching alignments... [133.099s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.182s] Building query seed array... [2.433s] Computing hash join... [5.002s] Masking low complexity seeds... [0.201s] Searching alignments... [105.766s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.136s] Building query seed array... [2.039s] Computing hash join... [4.864s] Masking low complexity seeds... [0.2s] Searching alignments... [103.166s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.055s] Building query seed array... [1.892s] Computing hash join... [4.708s] Masking low complexity seeds... [0.193s] Searching alignments... [147.908s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.344s] Building query seed array... [2.148s] Computing hash join... [4.741s] Masking low complexity seeds... [0.193s] Searching alignments... [115.442s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.207s] Building query seed array... [2.25s] Computing hash join... [4.684s] Masking low complexity seeds... [0.19s] Searching alignments... [87.95s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.038s] Building query seed array... [1.892s] Computing hash join... [4.737s] Masking low complexity seeds... [0.197s] Searching alignments... [87.411s] Deallocating memory... [0s] Deallocating buffers... [0.13s] Clearing query masking... [1.479s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.495s] Sorting trace points... [1.345s] Computing alignments... [33.299s] Deallocating buffers... [0.02s] Loading trace points... [0.06s] Sorting trace points... [1.009s] Computing alignments... [34.174s] Deallocating buffers... [0.025s] Loading trace points... [0.073s] Sorting trace points... [1.378s] Computing alignments... [34.54s] Deallocating buffers... [0.029s] Loading trace points... [0.071s] Sorting trace points... [1.498s] Computing alignments... [35.913s] Deallocating buffers... [0.019s] Loading trace points... [0.061s] Sorting trace points... [1.334s] Computing alignments... [33.556s] Deallocating buffers... [0.025s] Loading trace points... [0.051s] Sorting trace points... [1.34s] Computing alignments... [33.808s] Deallocating buffers... [0.028s] Loading trace points... [0.089s] Sorting trace points... [1.34s] Computing alignments... [34.503s] Deallocating buffers... [0.029s] Loading trace points... [0.103s] Sorting trace points... [1.435s] Computing alignments... [35.583s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.325s] Computing alignments... [34.43s] Deallocating buffers... [0.025s] Loading trace points... [0.057s] Sorting trace points... [1.401s] Computing alignments... [34.769s] Deallocating buffers... [0.023s] Loading trace points... [0.048s] Sorting trace points... [1.359s] Computing alignments... [34.716s] Deallocating buffers... [0.03s] Loading trace points... [0.051s] Sorting trace points... [1.368s] Computing alignments... [35.726s] Deallocating buffers... [0.026s] Loading trace points... [0.068s] Sorting trace points... [1.409s] Computing alignments... [34.201s] Deallocating buffers... [0.017s] Loading trace points... [0.075s] Sorting trace points... [1.287s] Computing alignments... [33.454s] Deallocating buffers... [0.028s] Loading trace points... [0.067s] Sorting trace points... [1.301s] Computing alignments... [34.241s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.316s] Computing alignments... [34.263s] Deallocating buffers... [0.025s] Loading trace points... [0s] [581.614s] Deallocating reference... [0.071s] Loading reference sequences... [31.943s] Masking reference... [32.208s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.263s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.437s] Building query seed array... [2.072s] Computing hash join... [4.888s] Masking low complexity seeds... [0.199s] Searching alignments... [322.112s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.446s] Building query seed array... [2.375s] Computing hash join... [4.864s] Masking low complexity seeds... [0.203s] Searching alignments... [135.579s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.484s] Building query seed array... [2.442s] Computing hash join... [4.917s] Masking low complexity seeds... [0.203s] Searching alignments... [104.568s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.989s] Building query seed array... [1.992s] Computing hash join... [4.937s] Masking low complexity seeds... [0.207s] Searching alignments... [101.154s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.967s] Building query seed array... [1.895s] Computing hash join... [4.798s] Masking low complexity seeds... [0.194s] Searching alignments... [151.398s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.297s] Building query seed array... [2.13s] Computing hash join... [4.812s] Masking low complexity seeds... [0.189s] Searching alignments... [114.626s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.246s] Building query seed array... [2.252s] Computing hash join... [4.768s] Masking low complexity seeds... [0.196s] Searching alignments... [87.231s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.173s] Building query seed array... [1.92s] Computing hash join... [4.693s] Masking low complexity seeds... [0.202s] Searching alignments... [87.137s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.507s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.522s] Sorting trace points... [1.311s] Computing alignments... [40.958s] Deallocating buffers... [0.034s] Loading trace points... [0.082s] Sorting trace points... [1.302s] Computing alignments... [42.845s] Deallocating buffers... [0.028s] Loading trace points... [1.078s] Sorting trace points... [1.288s] Computing alignments... [43.168s] Deallocating buffers... [0.026s] Loading trace points... [0.058s] Sorting trace points... [1.137s] Computing alignments... [45.205s] Deallocating buffers... [0.031s] Loading trace points... [0.001s] Sorting trace points... [1.299s] Computing alignments... [41.608s] Deallocating buffers... [0.025s] Loading trace points... [0.057s] Sorting trace points... [1.361s] Computing alignments... [42.143s] Deallocating buffers... [0.025s] Loading trace points... [0.082s] Sorting trace points... [1.332s] Computing alignments... [43.647s] Deallocating buffers... [0.026s] Loading trace points... [0.07s] Sorting trace points... [1.184s] Computing alignments... [44.589s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.287s] Computing alignments... [43.348s] Deallocating buffers... [0.029s] Loading trace points... [0.076s] Sorting trace points... [1.401s] Computing alignments... [42.35s] Deallocating buffers... [0.033s] Loading trace points... [0.073s] Sorting trace points... [1.456s] Computing alignments... [42.759s] Deallocating buffers... [0.027s] Loading trace points... [0.073s] Sorting trace points... [1.474s] Computing alignments... [44.06s] Deallocating buffers... [0.031s] Loading trace points... [0.078s] Sorting trace points... [1.034s] Computing alignments... [41.131s] Deallocating buffers... [0.029s] Loading trace points... [0.057s] Sorting trace points... [1.315s] Computing alignments... [41.196s] Deallocating buffers... [0.033s] Loading trace points... [0.067s] Sorting trace points... [1.065s] Computing alignments... [42.5s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [0.98s] Computing alignments... [42.106s] Deallocating buffers... [0.028s] Loading trace points... [0s] [713.839s] Deallocating reference... [0.073s] Loading reference sequences... [29.643s] Masking reference... [30.839s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.806s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.066s] Building query seed array... [2.101s] Computing hash join... [4.977s] Masking low complexity seeds... [0.202s] Searching alignments... [321s] Deallocating memory... [0.004s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.138s] Building query seed array... [2.354s] Computing hash join... [4.986s] Masking low complexity seeds... [0.216s] Searching alignments... [133.221s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.465s] Building query seed array... [2.501s] Computing hash join... [4.89s] Masking low complexity seeds... [0.209s] Searching alignments... [105.62s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.153s] Building query seed array... [2.119s] Computing hash join... [4.987s] Masking low complexity seeds... [0.212s] Searching alignments... [102.261s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.164s] Building query seed array... [1.867s] Computing hash join... [4.722s] Masking low complexity seeds... [0.185s] Searching alignments... [142.621s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.174s] Building query seed array... [2.185s] Computing hash join... [4.712s] Masking low complexity seeds... [0.19s] Searching alignments... [115.325s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.246s] Building query seed array... [2.246s] Computing hash join... [4.802s] Masking low complexity seeds... [0.19s] Searching alignments... [88.772s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.843s] Building query seed array... [1.908s] Computing hash join... [4.736s] Masking low complexity seeds... [0.186s] Searching alignments... [89.796s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.515s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.461s] Sorting trace points... [1.344s] Computing alignments... [41.13s] Deallocating buffers... [0.033s] Loading trace points... [0.067s] Sorting trace points... [1.035s] Computing alignments... [42.729s] Deallocating buffers... [0.032s] Loading trace points... [0.046s] Sorting trace points... [1.277s] Computing alignments... [42.909s] Deallocating buffers... [0.038s] Loading trace points... [0.532s] Sorting trace points... [1.556s] Computing alignments... [44.13s] Deallocating buffers... [0.032s] Loading trace points... [0.045s] Sorting trace points... [1.312s] Computing alignments... [41.204s] Deallocating buffers... [0.036s] Loading trace points... [0.08s] Sorting trace points... [1.139s] Computing alignments... [41.548s] Deallocating buffers... [0.033s] Loading trace points... [0.07s] Sorting trace points... [1.283s] Computing alignments... [43.255s] Deallocating buffers... [0.031s] Loading trace points... [0.074s] Sorting trace points... [1.422s] Computing alignments... [43.96s] Deallocating buffers... [0.032s] Loading trace points... [0.043s] Sorting trace points... [1.182s] Computing alignments... [42.973s] Deallocating buffers... [0.034s] Loading trace points... [0.052s] Sorting trace points... [1.046s] Computing alignments... [42.205s] Deallocating buffers... [0.034s] Loading trace points... [0.118s] Sorting trace points... [1.247s] Computing alignments... [42.096s] Deallocating buffers... [0.031s] Loading trace points... [0.001s] Sorting trace points... [1.474s] Computing alignments... [43.8s] Deallocating buffers... [0.035s] Loading trace points... [0.045s] Sorting trace points... [1.396s] Computing alignments... [40.545s] Deallocating buffers... [0.035s] Loading trace points... [0.08s] Sorting trace points... [1.208s] Computing alignments... [41.33s] Deallocating buffers... [0.033s] Loading trace points... [0.081s] Sorting trace points... [0.986s] Computing alignments... [42.497s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.196s] Computing alignments... [41.608s] Deallocating buffers... [0.032s] Loading trace points... [0s] [707.49s] Deallocating reference... [0.082s] Loading reference sequences... [29.562s] Masking reference... [32.097s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.011s] Building reference histograms... [32.32s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.453s] Building query seed array... [2.077s] Computing hash join... [4.977s] Masking low complexity seeds... [0.204s] Searching alignments... [320.606s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.269s] Building query seed array... [2.413s] Computing hash join... [4.84s] Masking low complexity seeds... [0.21s] Searching alignments... [136.114s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.352s] Building query seed array... [2.416s] Computing hash join... [4.87s] Masking low complexity seeds... [0.214s] Searching alignments... [103.2s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.787s] Building query seed array... [2.045s] Computing hash join... [4.861s] Masking low complexity seeds... [0.203s] Searching alignments... [98.738s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.094s] Building query seed array... [1.865s] Computing hash join... [4.784s] Masking low complexity seeds... [0.197s] Searching alignments... [147.263s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.495s] Building query seed array... [2.071s] Computing hash join... [4.747s] Masking low complexity seeds... [0.2s] Searching alignments... [115.333s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.694s] Building query seed array... [2.263s] Computing hash join... [4.81s] Masking low complexity seeds... [0.191s] Searching alignments... [88.205s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.715s] Building query seed array... [1.906s] Computing hash join... [4.715s] Masking low complexity seeds... [0.19s] Searching alignments... [86.822s] Deallocating memory... [0s] Deallocating buffers... [0.13s] Clearing query masking... [1.561s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.488s] Sorting trace points... [1.315s] Computing alignments... [38.881s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.114s] Computing alignments... [40.905s] Deallocating buffers... [0.028s] Loading trace points... [0.087s] Sorting trace points... [1.294s] Computing alignments... [41.099s] Deallocating buffers... [0.028s] Loading trace points... [0.068s] Sorting trace points... [1.424s] Computing alignments... [42.603s] Deallocating buffers... [0.031s] Loading trace points... [0.091s] Sorting trace points... [1.244s] Computing alignments... [39.592s] Deallocating buffers... [0.026s] Loading trace points... [0.044s] Sorting trace points... [1.314s] Computing alignments... [40.102s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.377s] Computing alignments... [41.133s] Deallocating buffers... [0.03s] Loading trace points... [0.06s] Sorting trace points... [1.393s] Computing alignments... [42.325s] Deallocating buffers... [0.026s] Loading trace points... [0.075s] Sorting trace points... [1.009s] Computing alignments... [40.915s] Deallocating buffers... [0.027s] Loading trace points... [0.091s] Sorting trace points... [1.392s] Computing alignments... [40.889s] Deallocating buffers... [0.03s] Loading trace points... [0.708s] Sorting trace points... [1.058s] Computing alignments... [40.391s] Deallocating buffers... [0.029s] Loading trace points... [0.061s] Sorting trace points... [1.097s] Computing alignments... [42.062s] Deallocating buffers... [0.028s] Loading trace points... [0.067s] Sorting trace points... [1.39s] Computing alignments... [39.301s] Deallocating buffers... [0.03s] Loading trace points... [0.088s] Sorting trace points... [1.336s] Computing alignments... [39.549s] Deallocating buffers... [0.025s] Loading trace points... [0.052s] Sorting trace points... [1.357s] Computing alignments... [40.589s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.344s] Computing alignments... [39.874s] Deallocating buffers... [0.029s] Loading trace points... [0s] [680.345s] Deallocating reference... [0.074s] Loading reference sequences... [24.056s] Masking reference... [26.096s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.01s] Building reference histograms... [25.989s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.054s] Building query seed array... [2.226s] Computing hash join... [4.147s] Masking low complexity seeds... [0.196s] Searching alignments... [262.376s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.193s] Building query seed array... [2.391s] Computing hash join... [4.157s] Masking low complexity seeds... [0.194s] Searching alignments... [107.19s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.045s] Building query seed array... [2.389s] Computing hash join... [4.027s] Masking low complexity seeds... [0.188s] Searching alignments... [86.522s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.06s] Building query seed array... [2.003s] Computing hash join... [4.076s] Masking low complexity seeds... [0.193s] Searching alignments... [81.757s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.088s] Building query seed array... [1.854s] Computing hash join... [3.904s] Masking low complexity seeds... [0.176s] Searching alignments... [116.342s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.121s] Building query seed array... [2.192s] Computing hash join... [3.931s] Masking low complexity seeds... [0.183s] Searching alignments... [93.098s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.762s] Building query seed array... [2.196s] Computing hash join... [3.987s] Masking low complexity seeds... [0.184s] Searching alignments... [71.452s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.963s] Building query seed array... [1.828s] Computing hash join... [4.039s] Masking low complexity seeds... [0.193s] Searching alignments... [71.468s] Deallocating memory... [0s] Deallocating buffers... [0.107s] Clearing query masking... [1.544s] Opening temporary output file... [0.043s] Computing alignments... Loading trace points... [6.458s] Sorting trace points... [1.119s] Computing alignments... [30.254s] Deallocating buffers... [0.02s] Loading trace points... [0.085s] Sorting trace points... [1.101s] Computing alignments... [31.097s] Deallocating buffers... [0.023s] Loading trace points... [0.064s] Sorting trace points... [1.078s] Computing alignments... [31.433s] Deallocating buffers... [0.021s] Loading trace points... [0.081s] Sorting trace points... [0.89s] Computing alignments... [32.96s] Deallocating buffers... [0.024s] Loading trace points... [0.059s] Sorting trace points... [1.084s] Computing alignments... [30.277s] Deallocating buffers... [0.02s] Loading trace points... [0.063s] Sorting trace points... [1.028s] Computing alignments... [31.117s] Deallocating buffers... [0.019s] Loading trace points... [0.099s] Sorting trace points... [1.031s] Computing alignments... [31.836s] Deallocating buffers... [0.021s] Loading trace points... [0.052s] Sorting trace points... [1.118s] Computing alignments... [32.847s] Deallocating buffers... [0.021s] Loading trace points... [0.072s] Sorting trace points... [1.125s] Computing alignments... [31.311s] Deallocating buffers... [0.021s] Loading trace points... [0.049s] Sorting trace points... [1.155s] Computing alignments... [31.01s] Deallocating buffers... [0.024s] Loading trace points... [0.063s] Sorting trace points... [1.11s] Computing alignments... [30.887s] Deallocating buffers... [0.021s] Loading trace points... [0.037s] Sorting trace points... [1.116s] Computing alignments... [32.107s] Deallocating buffers... [0.021s] Loading trace points... [1.038s] Sorting trace points... [0.916s] Computing alignments... [30.319s] Deallocating buffers... [0.023s] Loading trace points... [0.062s] Sorting trace points... [1.09s] Computing alignments... [30.015s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.125s] Computing alignments... [31.033s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [0.959s] Computing alignments... [31.103s] Deallocating buffers... [0.021s] Loading trace points... [0s] [525.379s] Deallocating reference... [0.06s] Loading reference sequences... [0.071s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2134.06s] [2134.06s] Deallocating queries... [0.065s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.064s] [4.106s] Closing the database... [0s] Cleaning up... [0s] Total time = 30145.8s Reported 2326180257 pairwise alignments, 2326180257 HSPs. 4240072 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-02.trimmed.R1.fastq.gz complete: CH09-02.trimmed.R1.blastx.meganized.daa Now MEGANizing CH09-02.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH09-02.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (178.9s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,117.8s) Total reads: 4,240,072 With hits: 4,240,072 Alignments: 1,837,811,038 Assig. Taxonomy: 1,806,918 Assig. SEED: 72,218 Assig. EGGNOG: 19,174 Assig. GTDB: 159,130 Assig. EC: 267,024 Assig. INTERPRO2GO: 790,821 MinSupport set to: 2120 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,419 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.2s) Min-supp. changes: 3,967 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.0s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 171 Class. SEED: 502 Class. EGGNOG: 1,591 Class. GTDB: 44 Class. EC: 2,423 Class. INTERPRO2GO: 8,758 Total time: 4,322s Peak memory: 37.4 of 195.3G MEGANization of CH09-02.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-02.trimmed.R2.fastq.gz... 1b1309aee7842ef44fdc88db6b972ff9 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-02.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-02.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.633s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.731s] Opening the output file... [0s] Loading query sequences... [90.112s] Masking queries... [23.686s] Algorithm: Double-indexed Building query histograms... [21.545s] Loading reference sequences... [31.316s] Masking reference... [32.086s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.009s] Building reference histograms... [32.863s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.762s] Building query seed array... [2.064s] Computing hash join... [5.152s] Masking low complexity seeds... [0.211s] Searching alignments... [328.33s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.754s] Building query seed array... [2.362s] Computing hash join... [4.977s] Masking low complexity seeds... [0.203s] Searching alignments... [137.88s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.37s] Building query seed array... [2.424s] Computing hash join... [4.927s] Masking low complexity seeds... [0.201s] Searching alignments... [108.236s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.921s] Building query seed array... [2.057s] Computing hash join... [4.825s] Masking low complexity seeds... [0.203s] Searching alignments... [102.672s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.895s] Building query seed array... [1.904s] Computing hash join... [4.682s] Masking low complexity seeds... [0.191s] Searching alignments... [150.796s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.014s] Building query seed array... [2.114s] Computing hash join... [4.815s] Masking low complexity seeds... [0.195s] Searching alignments... [123.607s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.019s] Building query seed array... [2.225s] Computing hash join... [4.739s] Masking low complexity seeds... [0.192s] Searching alignments... [89.119s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.833s] Building query seed array... [1.831s] Computing hash join... [4.808s] Masking low complexity seeds... [0.191s] Searching alignments... [91.958s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.499s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.003s] Sorting trace points... [1.391s] Computing alignments... [37.053s] Deallocating buffers... [0.026s] Loading trace points... [0.549s] Sorting trace points... [1.349s] Computing alignments... [37.657s] Deallocating buffers... [0.03s] Loading trace points... [0.056s] Sorting trace points... [1.328s] Computing alignments... [37.573s] Deallocating buffers... [0.03s] Loading trace points... [0.078s] Sorting trace points... [1.375s] Computing alignments... [39.297s] Deallocating buffers... [0.027s] Loading trace points... [0.044s] Sorting trace points... [1.409s] Computing alignments... [37.346s] Deallocating buffers... [0.019s] Loading trace points... [0.063s] Sorting trace points... [1.375s] Computing alignments... [36.973s] Deallocating buffers... [0.022s] Loading trace points... [0.08s] Sorting trace points... [1.394s] Computing alignments... [37.391s] Deallocating buffers... [0.026s] Loading trace points... [0.075s] Sorting trace points... [1.437s] Computing alignments... [38.555s] Deallocating buffers... [0.029s] Loading trace points... [0.063s] Sorting trace points... [1.3s] Computing alignments... [37.424s] Deallocating buffers... [0.025s] Loading trace points... [0.076s] Sorting trace points... [1.399s] Computing alignments... [37.794s] Deallocating buffers... [0.026s] Loading trace points... [0.046s] Sorting trace points... [1.425s] Computing alignments... [38.143s] Deallocating buffers... [0.023s] Loading trace points... [0.06s] Sorting trace points... [1.424s] Computing alignments... [38.172s] Deallocating buffers... [0.026s] Loading trace points... [0.061s] Sorting trace points... [1.209s] Computing alignments... [37.475s] Deallocating buffers... [0.026s] Loading trace points... [0.07s] Sorting trace points... [1.389s] Computing alignments... [36.308s] Deallocating buffers... [0.029s] Loading trace points... [0.091s] Sorting trace points... [1.307s] Computing alignments... [36.212s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.311s] Computing alignments... [35.871s] Deallocating buffers... [0.029s] Loading trace points... [0s] [630.99s] Deallocating reference... [0.07s] Loading reference sequences... [31.096s] Masking reference... [30.845s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.502s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.447s] Building query seed array... [2.088s] Computing hash join... [4.854s] Masking low complexity seeds... [0.205s] Searching alignments... [322.65s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.122s] Building query seed array... [2.373s] Computing hash join... [4.989s] Masking low complexity seeds... [0.203s] Searching alignments... [135.245s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.205s] Building query seed array... [2.5s] Computing hash join... [4.839s] Masking low complexity seeds... [0.206s] Searching alignments... [105.21s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.714s] Building query seed array... [2.039s] Computing hash join... [4.823s] Masking low complexity seeds... [0.206s] Searching alignments... [102.051s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.966s] Building query seed array... [1.914s] Computing hash join... [4.781s] Masking low complexity seeds... [0.198s] Searching alignments... [156.247s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.238s] Building query seed array... [2.144s] Computing hash join... [4.703s] Masking low complexity seeds... [0.199s] Searching alignments... [118.574s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.117s] Building query seed array... [2.238s] Computing hash join... [4.687s] Masking low complexity seeds... [0.189s] Searching alignments... [89.083s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.152s] Building query seed array... [1.882s] Computing hash join... [4.822s] Masking low complexity seeds... [0.193s] Searching alignments... [92.532s] Deallocating memory... [0s] Deallocating buffers... [0.13s] Clearing query masking... [1.557s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.674s] Sorting trace points... [1.41s] Computing alignments... [40.296s] Deallocating buffers... [0.032s] Loading trace points... [0.054s] Sorting trace points... [1.409s] Computing alignments... [41.149s] Deallocating buffers... [0.037s] Loading trace points... [0.325s] Sorting trace points... [1.042s] Computing alignments... [40.839s] Deallocating buffers... [0.029s] Loading trace points... [0.075s] Sorting trace points... [1.464s] Computing alignments... [42.009s] Deallocating buffers... [0.028s] Loading trace points... [0.088s] Sorting trace points... [1.325s] Computing alignments... [40.936s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.047s] Computing alignments... [40.429s] Deallocating buffers... [0.037s] Loading trace points... [0.079s] Sorting trace points... [1.357s] Computing alignments... [39.71s] Deallocating buffers... [0.028s] Loading trace points... [0.096s] Sorting trace points... [1.4s] Computing alignments... [41.343s] Deallocating buffers... [0.03s] Loading trace points... [0.098s] Sorting trace points... [1.32s] Computing alignments... [40.739s] Deallocating buffers... [0.029s] Loading trace points... [0.08s] Sorting trace points... [1.406s] Computing alignments... [41.389s] Deallocating buffers... [0.032s] Loading trace points... [0.062s] Sorting trace points... [1.357s] Computing alignments... [41.514s] Deallocating buffers... [0.031s] Loading trace points... [0.001s] Sorting trace points... [1.416s] Computing alignments... [40.977s] Deallocating buffers... [0.028s] Loading trace points... [0.001s] Sorting trace points... [1.205s] Computing alignments... [40.246s] Deallocating buffers... [0.029s] Loading trace points... [0.049s] Sorting trace points... [1.292s] Computing alignments... [39.298s] Deallocating buffers... [0.027s] Loading trace points... [0.057s] Sorting trace points... [1.326s] Computing alignments... [38.448s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.351s] Computing alignments... [37.936s] Deallocating buffers... [0.038s] Loading trace points... [0s] [677.801s] Deallocating reference... [0.074s] Loading reference sequences... [31.583s] Masking reference... [31.973s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.93s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.317s] Building query seed array... [2.1s] Computing hash join... [4.892s] Masking low complexity seeds... [0.206s] Searching alignments... [323.328s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.709s] Building query seed array... [2.378s] Computing hash join... [4.882s] Masking low complexity seeds... [0.203s] Searching alignments... [136.451s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.99s] Building query seed array... [2.475s] Computing hash join... [4.937s] Masking low complexity seeds... [0.21s] Searching alignments... [106.033s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.045s] Building query seed array... [2.049s] Computing hash join... [4.834s] Masking low complexity seeds... [0.203s] Searching alignments... [102.935s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.861s] Building query seed array... [1.875s] Computing hash join... [4.753s] Masking low complexity seeds... [0.188s] Searching alignments... [152.619s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.491s] Building query seed array... [2.154s] Computing hash join... [4.69s] Masking low complexity seeds... [0.194s] Searching alignments... [123.804s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.281s] Building query seed array... [2.272s] Computing hash join... [4.778s] Masking low complexity seeds... [0.196s] Searching alignments... [88.103s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.432s] Building query seed array... [1.969s] Computing hash join... [4.671s] Masking low complexity seeds... [0.198s] Searching alignments... [95.786s] Deallocating memory... [0s] Deallocating buffers... [0.132s] Clearing query masking... [1.496s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.692s] Sorting trace points... [1.373s] Computing alignments... [40.122s] Deallocating buffers... [0.026s] Loading trace points... [0.002s] Sorting trace points... [1.33s] Computing alignments... [39.677s] Deallocating buffers... [0.024s] Loading trace points... [0.052s] Sorting trace points... [1.364s] Computing alignments... [39.564s] Deallocating buffers... [0.026s] Loading trace points... [0.064s] Sorting trace points... [1.457s] Computing alignments... [41.167s] Deallocating buffers... [0.028s] Loading trace points... [0.074s] Sorting trace points... [1.334s] Computing alignments... [40.275s] Deallocating buffers... [0.028s] Loading trace points... [0.056s] Sorting trace points... [1.071s] Computing alignments... [39.683s] Deallocating buffers... [0.03s] Loading trace points... [0.206s] Sorting trace points... [1.296s] Computing alignments... [39.013s] Deallocating buffers... [0.028s] Loading trace points... [0.061s] Sorting trace points... [1.339s] Computing alignments... [40.624s] Deallocating buffers... [0.026s] Loading trace points... [0.082s] Sorting trace points... [1.305s] Computing alignments... [40.2s] Deallocating buffers... [0.028s] Loading trace points... [0.001s] Sorting trace points... [1.382s] Computing alignments... [40.752s] Deallocating buffers... [0.026s] Loading trace points... [0.063s] Sorting trace points... [1.11s] Computing alignments... [40.309s] Deallocating buffers... [0.027s] Loading trace points... [0.072s] Sorting trace points... [1.134s] Computing alignments... [40.463s] Deallocating buffers... [0.027s] Loading trace points... [0.256s] Sorting trace points... [1.054s] Computing alignments... [39.463s] Deallocating buffers... [0.027s] Loading trace points... [0.056s] Sorting trace points... [1.351s] Computing alignments... [38.544s] Deallocating buffers... [0.027s] Loading trace points... [0.1s] Sorting trace points... [1.288s] Computing alignments... [37.38s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.327s] Computing alignments... [37.757s] Deallocating buffers... [0.03s] Loading trace points... [0s] [664.92s] Deallocating reference... [0.075s] Loading reference sequences... [31.829s] Masking reference... [32.173s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.064s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.266s] Building query seed array... [2.071s] Computing hash join... [4.979s] Masking low complexity seeds... [0.211s] Searching alignments... [327.397s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.062s] Building query seed array... [2.337s] Computing hash join... [4.89s] Masking low complexity seeds... [0.206s] Searching alignments... [137.288s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.328s] Building query seed array... [2.525s] Computing hash join... [4.887s] Masking low complexity seeds... [0.202s] Searching alignments... [105.865s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.234s] Building query seed array... [2.044s] Computing hash join... [4.846s] Masking low complexity seeds... [0.205s] Searching alignments... [102.086s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.205s] Building query seed array... [1.864s] Computing hash join... [4.704s] Masking low complexity seeds... [0.193s] Searching alignments... [153.994s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.123s] Building query seed array... [2.118s] Computing hash join... [4.749s] Masking low complexity seeds... [0.189s] Searching alignments... [119.709s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.25s] Building query seed array... [2.205s] Computing hash join... [4.727s] Masking low complexity seeds... [0.19s] Searching alignments... [88.335s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.038s] Building query seed array... [1.894s] Computing hash join... [4.794s] Masking low complexity seeds... [0.199s] Searching alignments... [92.223s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.497s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.656s] Sorting trace points... [1.414s] Computing alignments... [41.592s] Deallocating buffers... [0.028s] Loading trace points... [0.064s] Sorting trace points... [1.084s] Computing alignments... [42.076s] Deallocating buffers... [0.026s] Loading trace points... [0.059s] Sorting trace points... [1.066s] Computing alignments... [41.953s] Deallocating buffers... [0.027s] Loading trace points... [0.918s] Sorting trace points... [1.265s] Computing alignments... [43.915s] Deallocating buffers... [0.032s] Loading trace points... [0.062s] Sorting trace points... [1.373s] Computing alignments... [42.455s] Deallocating buffers... [0.03s] Loading trace points... [0.068s] Sorting trace points... [1.267s] Computing alignments... [41.774s] Deallocating buffers... [0.026s] Loading trace points... [0.079s] Sorting trace points... [1.332s] Computing alignments... [41.04s] Deallocating buffers... [0.026s] Loading trace points... [0.085s] Sorting trace points... [1.22s] Computing alignments... [42.486s] Deallocating buffers... [0.03s] Loading trace points... [0.064s] Sorting trace points... [1.111s] Computing alignments... [42.075s] Deallocating buffers... [0.028s] Loading trace points... [0.058s] Sorting trace points... [1.359s] Computing alignments... [43.004s] Deallocating buffers... [0.027s] Loading trace points... [0.098s] Sorting trace points... [1.41s] Computing alignments... [42.505s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [1.446s] Computing alignments... [42.37s] Deallocating buffers... [0.031s] Loading trace points... [0.051s] Sorting trace points... [1.353s] Computing alignments... [41.845s] Deallocating buffers... [0.025s] Loading trace points... [0.084s] Sorting trace points... [1.35s] Computing alignments... [40.492s] Deallocating buffers... [0.025s] Loading trace points... [0.913s] Sorting trace points... [1.304s] Computing alignments... [39.108s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.018s] Computing alignments... [38.738s] Deallocating buffers... [0.026s] Loading trace points... [0s] [698.611s] Deallocating reference... [0.073s] Loading reference sequences... [243.399s] Masking reference... [31.307s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.821s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.349s] Building query seed array... [2.085s] Computing hash join... [4.922s] Masking low complexity seeds... [0.204s] Searching alignments... [324.279s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.434s] Building query seed array... [2.334s] Computing hash join... [4.992s] Masking low complexity seeds... [0.209s] Searching alignments... [137.612s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.341s] Building query seed array... [2.465s] Computing hash join... [4.94s] Masking low complexity seeds... [0.218s] Searching alignments... [104.583s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.028s] Building query seed array... [2.003s] Computing hash join... [4.92s] Masking low complexity seeds... [0.205s] Searching alignments... [102.391s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.728s] Building query seed array... [1.852s] Computing hash join... [4.711s] Masking low complexity seeds... [0.187s] Searching alignments... [150.188s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.543s] Building query seed array... [2.128s] Computing hash join... [4.78s] Masking low complexity seeds... [0.195s] Searching alignments... [117.102s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.158s] Building query seed array... [2.186s] Computing hash join... [4.744s] Masking low complexity seeds... [0.189s] Searching alignments... [88.728s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.869s] Building query seed array... [2.688s] Computing hash join... [4.741s] Masking low complexity seeds... [0.191s] Searching alignments... [94.375s] Deallocating memory... [0s] Deallocating buffers... [0.13s] Clearing query masking... [1.616s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.682s] Sorting trace points... [1.395s] Computing alignments... [44.121s] Deallocating buffers... [0.039s] Loading trace points... [0.068s] Sorting trace points... [1.244s] Computing alignments... [44.055s] Deallocating buffers... [0.036s] Loading trace points... [0.092s] Sorting trace points... [1.293s] Computing alignments... [43.513s] Deallocating buffers... [0.043s] Loading trace points... [0.192s] Sorting trace points... [1.121s] Computing alignments... [45.895s] Deallocating buffers... [0.04s] Loading trace points... [0.083s] Sorting trace points... [1.026s] Computing alignments... [44.879s] Deallocating buffers... [0.04s] Loading trace points... [0.058s] Sorting trace points... [1.258s] Computing alignments... [43.846s] Deallocating buffers... [0.041s] Loading trace points... [0.063s] Sorting trace points... [1.424s] Computing alignments... [42.614s] Deallocating buffers... [0.036s] Loading trace points... [0.068s] Sorting trace points... [1.395s] Computing alignments... [44.368s] Deallocating buffers... [0.038s] Loading trace points... [0.076s] Sorting trace points... [1.014s] Computing alignments... [44.133s] Deallocating buffers... [0.034s] Loading trace points... [0.049s] Sorting trace points... [1.428s] Computing alignments... [44.6s] Deallocating buffers... [0.044s] Loading trace points... [0.066s] Sorting trace points... [1.304s] Computing alignments... [44.495s] Deallocating buffers... [0.037s] Loading trace points... [0.054s] Sorting trace points... [1.306s] Computing alignments... [45.129s] Deallocating buffers... [0.04s] Loading trace points... [0.052s] Sorting trace points... [1.068s] Computing alignments... [43.474s] Deallocating buffers... [0.041s] Loading trace points... [0.073s] Sorting trace points... [1.149s] Computing alignments... [42.392s] Deallocating buffers... [0.036s] Loading trace points... [0.053s] Sorting trace points... [1.139s] Computing alignments... [40.871s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.355s] Computing alignments... [40.984s] Deallocating buffers... [0.035s] Loading trace points... [0s] [728.759s] Deallocating reference... [0.077s] Loading reference sequences... [29.795s] Masking reference... [30.927s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.641s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.907s] Building query seed array... [2.143s] Computing hash join... [4.952s] Masking low complexity seeds... [0.204s] Searching alignments... [320.239s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.61s] Building query seed array... [2.424s] Computing hash join... [4.996s] Masking low complexity seeds... [0.203s] Searching alignments... [135.913s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.422s] Building query seed array... [2.488s] Computing hash join... [5.007s] Masking low complexity seeds... [0.208s] Searching alignments... [106.059s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.052s] Building query seed array... [2.054s] Computing hash join... [4.939s] Masking low complexity seeds... [0.226s] Searching alignments... [102.371s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.353s] Building query seed array... [1.861s] Computing hash join... [4.794s] Masking low complexity seeds... [0.191s] Searching alignments... [148.864s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.682s] Building query seed array... [2.241s] Computing hash join... [4.823s] Masking low complexity seeds... [0.193s] Searching alignments... [121.679s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.075s] Building query seed array... [2.22s] Computing hash join... [4.725s] Masking low complexity seeds... [0.188s] Searching alignments... [88.674s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.016s] Building query seed array... [1.87s] Computing hash join... [4.832s] Masking low complexity seeds... [0.192s] Searching alignments... [91.421s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.565s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.618s] Sorting trace points... [1.438s] Computing alignments... [36.664s] Deallocating buffers... [0.027s] Loading trace points... [0.071s] Sorting trace points... [1.346s] Computing alignments... [37.652s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.3s] Computing alignments... [37.286s] Deallocating buffers... [0.027s] Loading trace points... [0.066s] Sorting trace points... [1.452s] Computing alignments... [38.984s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.334s] Computing alignments... [36.595s] Deallocating buffers... [0.029s] Loading trace points... [0.075s] Sorting trace points... [1.106s] Computing alignments... [36.632s] Deallocating buffers... [0.028s] Loading trace points... [0.078s] Sorting trace points... [1.162s] Computing alignments... [36.698s] Deallocating buffers... [0.028s] Loading trace points... [0.077s] Sorting trace points... [1.441s] Computing alignments... [38.2s] Deallocating buffers... [0.026s] Loading trace points... [0.105s] Sorting trace points... [1.38s] Computing alignments... [37.099s] Deallocating buffers... [0.023s] Loading trace points... [0.064s] Sorting trace points... [1.363s] Computing alignments... [37.241s] Deallocating buffers... [0.029s] Loading trace points... [0.079s] Sorting trace points... [1.362s] Computing alignments... [37.176s] Deallocating buffers... [0.031s] Loading trace points... [0.072s] Sorting trace points... [1.077s] Computing alignments... [38.115s] Deallocating buffers... [0.028s] Loading trace points... [0.058s] Sorting trace points... [1.392s] Computing alignments... [36.886s] Deallocating buffers... [0.018s] Loading trace points... [0.475s] Sorting trace points... [1.384s] Computing alignments... [35.878s] Deallocating buffers... [0.025s] Loading trace points... [0.055s] Sorting trace points... [1.275s] Computing alignments... [35.687s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.299s] Computing alignments... [35.171s] Deallocating buffers... [0.024s] Loading trace points... [0s] [622.652s] Deallocating reference... [0.075s] Loading reference sequences... [29.91s] Masking reference... [30.879s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.381s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.167s] Building query seed array... [2.196s] Computing hash join... [4.934s] Masking low complexity seeds... [0.206s] Searching alignments... [323.913s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.915s] Building query seed array... [2.378s] Computing hash join... [4.875s] Masking low complexity seeds... [0.212s] Searching alignments... [137.258s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.091s] Building query seed array... [2.507s] Computing hash join... [4.915s] Masking low complexity seeds... [0.199s] Searching alignments... [104.087s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.945s] Building query seed array... [2.018s] Computing hash join... [4.852s] Masking low complexity seeds... [0.201s] Searching alignments... [101.193s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.407s] Building query seed array... [1.889s] Computing hash join... [4.779s] Masking low complexity seeds... [0.194s] Searching alignments... [148.22s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.012s] Building query seed array... [2.139s] Computing hash join... [4.743s] Masking low complexity seeds... [0.19s] Searching alignments... [121.523s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.477s] Building query seed array... [2.265s] Computing hash join... [4.718s] Masking low complexity seeds... [0.187s] Searching alignments... [89.417s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.035s] Building query seed array... [1.94s] Computing hash join... [4.688s] Masking low complexity seeds... [0.204s] Searching alignments... [91.445s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.498s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.952s] Sorting trace points... [1.38s] Computing alignments... [36.765s] Deallocating buffers... [0.026s] Loading trace points... [0.071s] Sorting trace points... [1.346s] Computing alignments... [37.192s] Deallocating buffers... [0.03s] Loading trace points... [0.366s] Sorting trace points... [1.357s] Computing alignments... [36.958s] Deallocating buffers... [0.027s] Loading trace points... [0.075s] Sorting trace points... [1.084s] Computing alignments... [38.592s] Deallocating buffers... [0.029s] Loading trace points... [0.064s] Sorting trace points... [1.36s] Computing alignments... [36.85s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.3s] Computing alignments... [36.641s] Deallocating buffers... [0.026s] Loading trace points... [0.053s] Sorting trace points... [1.476s] Computing alignments... [36.961s] Deallocating buffers... [0.024s] Loading trace points... [0.067s] Sorting trace points... [1.381s] Computing alignments... [37.991s] Deallocating buffers... [0.018s] Loading trace points... [0.071s] Sorting trace points... [1.326s] Computing alignments... [37.403s] Deallocating buffers... [0.026s] Loading trace points... [0.076s] Sorting trace points... [1.048s] Computing alignments... [37.361s] Deallocating buffers... [0.026s] Loading trace points... [0.082s] Sorting trace points... [1.412s] Computing alignments... [37.261s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.392s] Computing alignments... [38.144s] Deallocating buffers... [0.027s] Loading trace points... [0.068s] Sorting trace points... [1.338s] Computing alignments... [36.773s] Deallocating buffers... [0.025s] Loading trace points... [0.067s] Sorting trace points... [1.293s] Computing alignments... [35.636s] Deallocating buffers... [0.025s] Loading trace points... [0.052s] Sorting trace points... [1.303s] Computing alignments... [35.764s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.323s] Computing alignments... [35.364s] Deallocating buffers... [0.028s] Loading trace points... [0s] [622.498s] Deallocating reference... [0.074s] Loading reference sequences... [29.517s] Masking reference... [32.127s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.814s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.256s] Building query seed array... [2.078s] Computing hash join... [4.996s] Masking low complexity seeds... [0.203s] Searching alignments... [325.875s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.171s] Building query seed array... [2.386s] Computing hash join... [4.964s] Masking low complexity seeds... [0.199s] Searching alignments... [137.11s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.313s] Building query seed array... [2.463s] Computing hash join... [4.937s] Masking low complexity seeds... [0.204s] Searching alignments... [106.344s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.212s] Building query seed array... [2.016s] Computing hash join... [4.976s] Masking low complexity seeds... [0.206s] Searching alignments... [104.063s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.06s] Building query seed array... [1.855s] Computing hash join... [4.671s] Masking low complexity seeds... [0.195s] Searching alignments... [154.724s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.827s] Building query seed array... [2.117s] Computing hash join... [4.716s] Masking low complexity seeds... [0.185s] Searching alignments... [118.01s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.411s] Building query seed array... [2.231s] Computing hash join... [4.791s] Masking low complexity seeds... [0.191s] Searching alignments... [88.478s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.178s] Building query seed array... [1.952s] Computing hash join... [4.719s] Masking low complexity seeds... [0.186s] Searching alignments... [91.799s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.501s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.6s] Sorting trace points... [1.437s] Computing alignments... [35.705s] Deallocating buffers... [0.026s] Loading trace points... [0.049s] Sorting trace points... [1.365s] Computing alignments... [36.276s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [1.203s] Computing alignments... [36.045s] Deallocating buffers... [0.029s] Loading trace points... [0.097s] Sorting trace points... [1.412s] Computing alignments... [37.301s] Deallocating buffers... [0.025s] Loading trace points... [0.08s] Sorting trace points... [1.375s] Computing alignments... [35.778s] Deallocating buffers... [0.029s] Loading trace points... [0.059s] Sorting trace points... [1.321s] Computing alignments... [35.399s] Deallocating buffers... [0.025s] Loading trace points... [0.084s] Sorting trace points... [1.38s] Computing alignments... [35.648s] Deallocating buffers... [0.026s] Loading trace points... [0.055s] Sorting trace points... [1.276s] Computing alignments... [36.656s] Deallocating buffers... [0.019s] Loading trace points... [0.079s] Sorting trace points... [1.023s] Computing alignments... [35.969s] Deallocating buffers... [0.028s] Loading trace points... [0.039s] Sorting trace points... [1.349s] Computing alignments... [36.189s] Deallocating buffers... [0.026s] Loading trace points... [0.059s] Sorting trace points... [1.22s] Computing alignments... [36.484s] Deallocating buffers... [0.029s] Loading trace points... [0.052s] Sorting trace points... [1.375s] Computing alignments... [36.804s] Deallocating buffers... [0.03s] Loading trace points... [0.079s] Sorting trace points... [1.292s] Computing alignments... [35.696s] Deallocating buffers... [0.027s] Loading trace points... [0.065s] Sorting trace points... [1.304s] Computing alignments... [34.785s] Deallocating buffers... [0.028s] Loading trace points... [0.066s] Sorting trace points... [1.229s] Computing alignments... [34.829s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.291s] Computing alignments... [34.143s] Deallocating buffers... [0.025s] Loading trace points... [0s] [603.664s] Deallocating reference... [0.077s] Loading reference sequences... [33.334s] Masking reference... [31.346s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.619s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.392s] Building query seed array... [2.105s] Computing hash join... [4.944s] Masking low complexity seeds... [0.201s] Searching alignments... [327.96s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.206s] Building query seed array... [2.379s] Computing hash join... [4.87s] Masking low complexity seeds... [0.201s] Searching alignments... [136.502s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.35s] Building query seed array... [2.424s] Computing hash join... [4.879s] Masking low complexity seeds... [0.206s] Searching alignments... [108.497s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.808s] Building query seed array... [1.989s] Computing hash join... [4.875s] Masking low complexity seeds... [0.211s] Searching alignments... [103.2s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.296s] Building query seed array... [1.852s] Computing hash join... [4.705s] Masking low complexity seeds... [0.194s] Searching alignments... [153.489s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.042s] Building query seed array... [2.094s] Computing hash join... [4.72s] Masking low complexity seeds... [0.191s] Searching alignments... [118.981s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.199s] Building query seed array... [2.212s] Computing hash join... [4.766s] Masking low complexity seeds... [0.201s] Searching alignments... [90.082s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.111s] Building query seed array... [1.9s] Computing hash join... [4.713s] Masking low complexity seeds... [0.186s] Searching alignments... [93.474s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.447s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.409s] Sorting trace points... [1.361s] Computing alignments... [42.42s] Deallocating buffers... [0.034s] Loading trace points... [0.063s] Sorting trace points... [1.42s] Computing alignments... [42.085s] Deallocating buffers... [0.038s] Loading trace points... [0.097s] Sorting trace points... [1.382s] Computing alignments... [42.101s] Deallocating buffers... [0.031s] Loading trace points... [0.084s] Sorting trace points... [1.072s] Computing alignments... [43.972s] Deallocating buffers... [0.036s] Loading trace points... [0.087s] Sorting trace points... [1.362s] Computing alignments... [43.345s] Deallocating buffers... [0.034s] Loading trace points... [0.076s] Sorting trace points... [1.35s] Computing alignments... [42.184s] Deallocating buffers... [0.033s] Loading trace points... [0.063s] Sorting trace points... [1.375s] Computing alignments... [41.225s] Deallocating buffers... [0.031s] Loading trace points... [0.068s] Sorting trace points... [1.11s] Computing alignments... [42.959s] Deallocating buffers... [0.035s] Loading trace points... [0.069s] Sorting trace points... [1.01s] Computing alignments... [42.523s] Deallocating buffers... [0.036s] Loading trace points... [0.053s] Sorting trace points... [1.385s] Computing alignments... [42.989s] Deallocating buffers... [0.037s] Loading trace points... [0.077s] Sorting trace points... [1.382s] Computing alignments... [42.478s] Deallocating buffers... [0.033s] Loading trace points... [0.065s] Sorting trace points... [1.491s] Computing alignments... [43.346s] Deallocating buffers... [0.036s] Loading trace points... [0.077s] Sorting trace points... [1.389s] Computing alignments... [42.023s] Deallocating buffers... [0.036s] Loading trace points... [0.053s] Sorting trace points... [1.213s] Computing alignments... [41.253s] Deallocating buffers... [0.038s] Loading trace points... [0.049s] Sorting trace points... [1.204s] Computing alignments... [39.374s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.319s] Computing alignments... [38.989s] Deallocating buffers... [0.028s] Loading trace points... [0s] [704.14s] Deallocating reference... [0.066s] Loading reference sequences... [29.595s] Masking reference... [30.88s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.743s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.25s] Building query seed array... [2.11s] Computing hash join... [4.93s] Masking low complexity seeds... [0.199s] Searching alignments... [323.308s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.206s] Building query seed array... [2.39s] Computing hash join... [4.957s] Masking low complexity seeds... [0.206s] Searching alignments... [136.897s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.324s] Building query seed array... [2.426s] Computing hash join... [4.865s] Masking low complexity seeds... [0.202s] Searching alignments... [108.435s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.324s] Building query seed array... [1.999s] Computing hash join... [4.876s] Masking low complexity seeds... [0.2s] Searching alignments... [103.058s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.001s] Building query seed array... [1.85s] Computing hash join... [4.744s] Masking low complexity seeds... [0.188s] Searching alignments... [152.146s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.602s] Building query seed array... [2.135s] Computing hash join... [4.733s] Masking low complexity seeds... [0.189s] Searching alignments... [118.223s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.731s] Building query seed array... [2.228s] Computing hash join... [4.886s] Masking low complexity seeds... [0.195s] Searching alignments... [89.123s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.423s] Building query seed array... [1.894s] Computing hash join... [4.759s] Masking low complexity seeds... [0.195s] Searching alignments... [92.802s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.542s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.619s] Sorting trace points... [1.359s] Computing alignments... [34.566s] Deallocating buffers... [0.025s] Loading trace points... [0.066s] Sorting trace points... [1.302s] Computing alignments... [35.105s] Deallocating buffers... [0.024s] Loading trace points... [0.072s] Sorting trace points... [1.395s] Computing alignments... [35.102s] Deallocating buffers... [0.025s] Loading trace points... [0.065s] Sorting trace points... [1.448s] Computing alignments... [36.258s] Deallocating buffers... [0.031s] Loading trace points... [0.059s] Sorting trace points... [1.227s] Computing alignments... [34.734s] Deallocating buffers... [0.028s] Loading trace points... [0.05s] Sorting trace points... [1.331s] Computing alignments... [34.66s] Deallocating buffers... [0.026s] Loading trace points... [0.059s] Sorting trace points... [1.332s] Computing alignments... [34.64s] Deallocating buffers... [0.025s] Loading trace points... [0.059s] Sorting trace points... [1.368s] Computing alignments... [35.616s] Deallocating buffers... [0.026s] Loading trace points... [0.089s] Sorting trace points... [1.364s] Computing alignments... [34.939s] Deallocating buffers... [0.029s] Loading trace points... [0.05s] Sorting trace points... [1.38s] Computing alignments... [35.544s] Deallocating buffers... [0.022s] Loading trace points... [0.059s] Sorting trace points... [1.333s] Computing alignments... [35.551s] Deallocating buffers... [0.019s] Loading trace points... [0.066s] Sorting trace points... [1.066s] Computing alignments... [35.526s] Deallocating buffers... [0.027s] Loading trace points... [0.078s] Sorting trace points... [1.346s] Computing alignments... [34.664s] Deallocating buffers... [0.025s] Loading trace points... [0.064s] Sorting trace points... [1.328s] Computing alignments... [34.065s] Deallocating buffers... [0.028s] Loading trace points... [0.043s] Sorting trace points... [1.302s] Computing alignments... [33.841s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.313s] Computing alignments... [33.206s] Deallocating buffers... [0.025s] Loading trace points... [0s] [588.23s] Deallocating reference... [0.075s] Loading reference sequences... [29.994s] Masking reference... [32.065s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.352s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.526s] Building query seed array... [2.088s] Computing hash join... [4.929s] Masking low complexity seeds... [0.199s] Searching alignments... [326.81s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.654s] Building query seed array... [2.357s] Computing hash join... [4.939s] Masking low complexity seeds... [0.203s] Searching alignments... [136.592s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.427s] Building query seed array... [2.399s] Computing hash join... [4.859s] Masking low complexity seeds... [0.212s] Searching alignments... [105.746s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.886s] Building query seed array... [2.136s] Computing hash join... [4.989s] Masking low complexity seeds... [0.2s] Searching alignments... [102.411s] Deallocating memory... [0.003s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.042s] Building query seed array... [1.893s] Computing hash join... [4.714s] Masking low complexity seeds... [0.192s] Searching alignments... [148.567s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.28s] Building query seed array... [2.16s] Computing hash join... [4.691s] Masking low complexity seeds... [0.19s] Searching alignments... [116.571s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.707s] Building query seed array... [2.247s] Computing hash join... [4.793s] Masking low complexity seeds... [0.188s] Searching alignments... [89.85s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.983s] Building query seed array... [1.896s] Computing hash join... [4.74s] Masking low complexity seeds... [0.195s] Searching alignments... [90.807s] Deallocating memory... [0s] Deallocating buffers... [0.108s] Clearing query masking... [1.465s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.662s] Sorting trace points... [1.384s] Computing alignments... [43.738s] Deallocating buffers... [0.03s] Loading trace points... [0.062s] Sorting trace points... [1.241s] Computing alignments... [43.949s] Deallocating buffers... [0.032s] Loading trace points... [0.072s] Sorting trace points... [1.368s] Computing alignments... [43.136s] Deallocating buffers... [0.026s] Loading trace points... [0.066s] Sorting trace points... [1.306s] Computing alignments... [45.023s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.375s] Computing alignments... [43.767s] Deallocating buffers... [0.026s] Loading trace points... [0.07s] Sorting trace points... [1.412s] Computing alignments... [43.301s] Deallocating buffers... [0.029s] Loading trace points... [0.079s] Sorting trace points... [1.12s] Computing alignments... [42.949s] Deallocating buffers... [0.031s] Loading trace points... [0.062s] Sorting trace points... [1.241s] Computing alignments... [44.178s] Deallocating buffers... [0.03s] Loading trace points... [0.069s] Sorting trace points... [1.379s] Computing alignments... [43.782s] Deallocating buffers... [0.028s] Loading trace points... [0.058s] Sorting trace points... [1.139s] Computing alignments... [43.993s] Deallocating buffers... [0.028s] Loading trace points... [0.068s] Sorting trace points... [1.39s] Computing alignments... [43.982s] Deallocating buffers... [0.031s] Loading trace points... [0.074s] Sorting trace points... [1.145s] Computing alignments... [44.728s] Deallocating buffers... [0.032s] Loading trace points... [0.056s] Sorting trace points... [1.376s] Computing alignments... [43.262s] Deallocating buffers... [0.029s] Loading trace points... [0.086s] Sorting trace points... [1.364s] Computing alignments... [41.957s] Deallocating buffers... [0.028s] Loading trace points... [0.065s] Sorting trace points... [1.025s] Computing alignments... [41.237s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.319s] Computing alignments... [40.846s] Deallocating buffers... [0.032s] Loading trace points... [0s] [723.646s] Deallocating reference... [0.075s] Loading reference sequences... [243.993s] Masking reference... [30.968s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.956s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.455s] Building query seed array... [2.09s] Computing hash join... [4.904s] Masking low complexity seeds... [0.204s] Searching alignments... [325.866s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.316s] Building query seed array... [2.385s] Computing hash join... [4.932s] Masking low complexity seeds... [0.203s] Searching alignments... [137.336s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.379s] Building query seed array... [2.483s] Computing hash join... [4.977s] Masking low complexity seeds... [0.207s] Searching alignments... [108.901s] Deallocating memory... [0.002s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.779s] Building query seed array... [2.021s] Computing hash join... [4.869s] Masking low complexity seeds... [0.199s] Searching alignments... [104.249s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.844s] Building query seed array... [1.849s] Computing hash join... [4.725s] Masking low complexity seeds... [0.184s] Searching alignments... [152.136s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.685s] Building query seed array... [2.124s] Computing hash join... [4.755s] Masking low complexity seeds... [0.192s] Searching alignments... [120.852s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.629s] Building query seed array... [2.231s] Computing hash join... [4.748s] Masking low complexity seeds... [0.194s] Searching alignments... [89.889s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.121s] Building query seed array... [1.909s] Computing hash join... [4.807s] Masking low complexity seeds... [0.193s] Searching alignments... [93.972s] Deallocating memory... [0s] Deallocating buffers... [0.13s] Clearing query masking... [1.555s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.685s] Sorting trace points... [1.351s] Computing alignments... [43.587s] Deallocating buffers... [0.038s] Loading trace points... [0.085s] Sorting trace points... [1.214s] Computing alignments... [42.872s] Deallocating buffers... [0.037s] Loading trace points... [0.045s] Sorting trace points... [1.416s] Computing alignments... [43.038s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.447s] Computing alignments... [44.583s] Deallocating buffers... [0.046s] Loading trace points... [0.054s] Sorting trace points... [1.117s] Computing alignments... [44.084s] Deallocating buffers... [0.039s] Loading trace points... [0.075s] Sorting trace points... [1.019s] Computing alignments... [42.999s] Deallocating buffers... [0.038s] Loading trace points... [0.108s] Sorting trace points... [1.197s] Computing alignments... [42.247s] Deallocating buffers... [0.034s] Loading trace points... [0.08s] Sorting trace points... [1.144s] Computing alignments... [43.455s] Deallocating buffers... [0.035s] Loading trace points... [0.074s] Sorting trace points... [1.352s] Computing alignments... [43.621s] Deallocating buffers... [0.034s] Loading trace points... [0.063s] Sorting trace points... [1.411s] Computing alignments... [43.651s] Deallocating buffers... [0.035s] Loading trace points... [0.066s] Sorting trace points... [1.24s] Computing alignments... [43.263s] Deallocating buffers... [0.035s] Loading trace points... [0.085s] Sorting trace points... [1.219s] Computing alignments... [44.395s] Deallocating buffers... [0.041s] Loading trace points... [0.058s] Sorting trace points... [1.415s] Computing alignments... [42.52s] Deallocating buffers... [0.042s] Loading trace points... [0.075s] Sorting trace points... [1.352s] Computing alignments... [41.772s] Deallocating buffers... [0.039s] Loading trace points... [0.079s] Sorting trace points... [1.161s] Computing alignments... [40s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.341s] Computing alignments... [40.431s] Deallocating buffers... [0.046s] Loading trace points... [0s] [716.318s] Deallocating reference... [0.078s] Loading reference sequences... [29.668s] Masking reference... [30.854s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.01s] Building reference histograms... [32.586s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.348s] Building query seed array... [2.081s] Computing hash join... [4.976s] Masking low complexity seeds... [0.213s] Searching alignments... [326.708s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.04s] Building query seed array... [2.365s] Computing hash join... [4.914s] Masking low complexity seeds... [0.205s] Searching alignments... [136.157s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.589s] Building query seed array... [2.51s] Computing hash join... [4.921s] Masking low complexity seeds... [0.2s] Searching alignments... [109.385s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.205s] Building query seed array... [2.022s] Computing hash join... [4.837s] Masking low complexity seeds... [0.207s] Searching alignments... [101.774s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.284s] Building query seed array... [1.858s] Computing hash join... [4.781s] Masking low complexity seeds... [0.19s] Searching alignments... [150.349s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.54s] Building query seed array... [2.148s] Computing hash join... [4.727s] Masking low complexity seeds... [0.19s] Searching alignments... [118.103s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.395s] Building query seed array... [2.251s] Computing hash join... [4.74s] Masking low complexity seeds... [0.19s] Searching alignments... [89.7s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.547s] Building query seed array... [1.898s] Computing hash join... [4.742s] Masking low complexity seeds... [0.185s] Searching alignments... [93.673s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.595s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.648s] Sorting trace points... [1.422s] Computing alignments... [41.395s] Deallocating buffers... [0.022s] Loading trace points... [0.051s] Sorting trace points... [1.237s] Computing alignments... [41.877s] Deallocating buffers... [0.029s] Loading trace points... [0.085s] Sorting trace points... [1.379s] Computing alignments... [41.452s] Deallocating buffers... [0.026s] Loading trace points... [0.095s] Sorting trace points... [1.4s] Computing alignments... [43.479s] Deallocating buffers... [0.029s] Loading trace points... [0.066s] Sorting trace points... [1.059s] Computing alignments... [42.238s] Deallocating buffers... [0.029s] Loading trace points... [0.063s] Sorting trace points... [1.155s] Computing alignments... [41.376s] Deallocating buffers... [0.026s] Loading trace points... [0.063s] Sorting trace points... [1.372s] Computing alignments... [40.564s] Deallocating buffers... [0.028s] Loading trace points... [0.069s] Sorting trace points... [1.362s] Computing alignments... [41.986s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.363s] Computing alignments... [41.544s] Deallocating buffers... [0.028s] Loading trace points... [0.055s] Sorting trace points... [1.109s] Computing alignments... [42.255s] Deallocating buffers... [0.029s] Loading trace points... [0.087s] Sorting trace points... [1.393s] Computing alignments... [41.887s] Deallocating buffers... [0.025s] Loading trace points... [0.001s] Sorting trace points... [1.069s] Computing alignments... [42.582s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.344s] Computing alignments... [41.134s] Deallocating buffers... [0.032s] Loading trace points... [0.066s] Sorting trace points... [1.33s] Computing alignments... [40.243s] Deallocating buffers... [0.025s] Loading trace points... [0.084s] Sorting trace points... [1.294s] Computing alignments... [38.835s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.325s] Computing alignments... [38.688s] Deallocating buffers... [0.029s] Loading trace points... [0s] [691.135s] Deallocating reference... [0.079s] Loading reference sequences... [23.745s] Masking reference... [25.04s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.009s] Building reference histograms... [26.485s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.266s] Building query seed array... [2.11s] Computing hash join... [4.078s] Masking low complexity seeds... [0.204s] Searching alignments... [259.835s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.243s] Building query seed array... [2.374s] Computing hash join... [4.105s] Masking low complexity seeds... [0.199s] Searching alignments... [111.52s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.698s] Building query seed array... [2.475s] Computing hash join... [4.045s] Masking low complexity seeds... [0.197s] Searching alignments... [84.456s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.199s] Building query seed array... [2.053s] Computing hash join... [3.993s] Masking low complexity seeds... [0.194s] Searching alignments... [82.013s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.336s] Building query seed array... [1.915s] Computing hash join... [4.014s] Masking low complexity seeds... [0.187s] Searching alignments... [127.093s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.24s] Building query seed array... [2.139s] Computing hash join... [3.926s] Masking low complexity seeds... [0.176s] Searching alignments... [95.572s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.912s] Building query seed array... [2.271s] Computing hash join... [3.872s] Masking low complexity seeds... [0.188s] Searching alignments... [71.855s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.375s] Building query seed array... [1.869s] Computing hash join... [3.844s] Masking low complexity seeds... [0.19s] Searching alignments... [74.24s] Deallocating memory... [0s] Deallocating buffers... [0.114s] Clearing query masking... [1.48s] Opening temporary output file... [0.013s] Computing alignments... Loading trace points... [6.372s] Sorting trace points... [1.073s] Computing alignments... [31.658s] Deallocating buffers... [0.022s] Loading trace points... [0.07s] Sorting trace points... [1.109s] Computing alignments... [32.418s] Deallocating buffers... [0.024s] Loading trace points... [0.062s] Sorting trace points... [1.073s] Computing alignments... [32.35s] Deallocating buffers... [0.024s] Loading trace points... [0.079s] Sorting trace points... [1.163s] Computing alignments... [33.447s] Deallocating buffers... [0.022s] Loading trace points... [0.078s] Sorting trace points... [1.022s] Computing alignments... [32.33s] Deallocating buffers... [0.022s] Loading trace points... [0.1s] Sorting trace points... [1.15s] Computing alignments... [31.956s] Deallocating buffers... [0.024s] Loading trace points... [0.076s] Sorting trace points... [1.108s] Computing alignments... [31.664s] Deallocating buffers... [0.022s] Loading trace points... [0.041s] Sorting trace points... [0.898s] Computing alignments... [32.552s] Deallocating buffers... [0.023s] Loading trace points... [0.054s] Sorting trace points... [0.903s] Computing alignments... [31.63s] Deallocating buffers... [0.022s] Loading trace points... [0.069s] Sorting trace points... [1.124s] Computing alignments... [32.044s] Deallocating buffers... [0.021s] Loading trace points... [0.67s] Sorting trace points... [1.049s] Computing alignments... [32.558s] Deallocating buffers... [0.021s] Loading trace points... [0.063s] Sorting trace points... [0.972s] Computing alignments... [32.622s] Deallocating buffers... [0.024s] Loading trace points... [0.071s] Sorting trace points... [1.132s] Computing alignments... [31.519s] Deallocating buffers... [0.021s] Loading trace points... [0.072s] Sorting trace points... [0.877s] Computing alignments... [30.932s] Deallocating buffers... [0.016s] Loading trace points... [0.073s] Sorting trace points... [0.821s] Computing alignments... [29.837s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.073s] Computing alignments... [29.986s] Deallocating buffers... [0.024s] Loading trace points... [0s] [534.515s] Deallocating reference... [0.063s] Loading reference sequences... [0.075s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2160.66s] [2160.66s] Deallocating queries... [0.064s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.025s] [3.839s] Closing the database... [0s] Cleaning up... [0s] Total time = 30862.4s Reported 2345369205 pairwise alignments, 2345369205 HSPs. 4270268 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-02.trimmed.R2.fastq.gz complete: CH09-02.trimmed.R2.blastx.meganized.daa Now MEGANizing CH09-02.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH09-02.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (168.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,373.7s) Total reads: 4,270,268 With hits: 4,270,268 Alignments: 1,859,749,878 Assig. Taxonomy: 1,808,451 Assig. SEED: 73,027 Assig. EGGNOG: 19,353 Assig. GTDB: 160,015 Assig. EC: 267,817 Assig. INTERPRO2GO: 790,665 MinSupport set to: 2135 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 5,300 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.7s) Min-supp. changes: 4,003 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.0s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 168 Class. SEED: 498 Class. EGGNOG: 1,607 Class. GTDB: 45 Class. EC: 2,413 Class. INTERPRO2GO: 8,715 Total time: 4,567s Peak memory: 47.9 of 195.3G MEGANization of CH09-02.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-13.trimmed.R1.fastq.gz... fa025eff07b5513efbac59fb60c1ad58 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-13.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-13.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.301s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.674s] Opening the output file... [0s] Loading query sequences... [81.409s] Masking queries... [22.386s] Algorithm: Double-indexed Building query histograms... [17.854s] Loading reference sequences... [29.57s] Masking reference... [30.877s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.009s] Building reference histograms... [32.765s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.088s] Building query seed array... [2.178s] Computing hash join... [5.571s] Masking low complexity seeds... [0.326s] Searching alignments... [143.226s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.953s] Building query seed array... [2.501s] Computing hash join... [5.304s] Masking low complexity seeds... [0.322s] Searching alignments... [63.771s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.689s] Building query seed array... [2.687s] Computing hash join... [5.323s] Masking low complexity seeds... [0.321s] Searching alignments... [54.572s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.391s] Building query seed array... [2.174s] Computing hash join... [5.271s] Masking low complexity seeds... [0.317s] Searching alignments... [57.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.362s] Building query seed array... [1.921s] Computing hash join... [5.049s] Masking low complexity seeds... [0.306s] Searching alignments... [61.69s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.553s] Building query seed array... [2.254s] Computing hash join... [5.124s] Masking low complexity seeds... [0.298s] Searching alignments... [60.584s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.531s] Building query seed array... [2.347s] Computing hash join... [5.125s] Masking low complexity seeds... [0.298s] Searching alignments... [50.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.941s] Building query seed array... [1.939s] Computing hash join... [5.17s] Masking low complexity seeds... [0.313s] Searching alignments... [46.912s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.442s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.173s] Sorting trace points... [1.277s] Computing alignments... [32.469s] Deallocating buffers... [0.027s] Loading trace points... [0.133s] Sorting trace points... [1.325s] Computing alignments... [32.127s] Deallocating buffers... [0.023s] Loading trace points... [0.097s] Sorting trace points... [1.352s] Computing alignments... [32.845s] Deallocating buffers... [0.023s] Loading trace points... [0.076s] Sorting trace points... [1.343s] Computing alignments... [35.253s] Deallocating buffers... [0.019s] Loading trace points... [0.047s] Sorting trace points... [1.074s] Computing alignments... [32.54s] Deallocating buffers... [0.028s] Loading trace points... [0.052s] Sorting trace points... [1.31s] Computing alignments... [32.083s] Deallocating buffers... [0.023s] Loading trace points... [0.057s] Sorting trace points... [1.311s] Computing alignments... [32.861s] Deallocating buffers... [0.024s] Loading trace points... [0.063s] Sorting trace points... [1.196s] Computing alignments... [35.322s] Deallocating buffers... [0.019s] Loading trace points... [0.063s] Sorting trace points... [1.034s] Computing alignments... [32.595s] Deallocating buffers... [0.025s] Loading trace points... [0.001s] Sorting trace points... [1.356s] Computing alignments... [34.055s] Deallocating buffers... [0.025s] Loading trace points... [0.046s] Sorting trace points... [1.353s] Computing alignments... [33.651s] Deallocating buffers... [0.028s] Loading trace points... [0.06s] Sorting trace points... [1.495s] Computing alignments... [35.505s] Deallocating buffers... [0.023s] Loading trace points... [0.062s] Sorting trace points... [1.179s] Computing alignments... [33.31s] Deallocating buffers... [0.025s] Loading trace points... [0.101s] Sorting trace points... [1.353s] Computing alignments... [33.424s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.335s] Computing alignments... [33.568s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.469s] Computing alignments... [34.445s] Deallocating buffers... [0.019s] Loading trace points... [0s] [565.375s] Deallocating reference... [0.064s] Loading reference sequences... [29.67s] Masking reference... [30.89s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.407s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.173s] Building query seed array... [2.151s] Computing hash join... [5.337s] Masking low complexity seeds... [0.327s] Searching alignments... [146.52s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.002s] Building query seed array... [2.476s] Computing hash join... [5.345s] Masking low complexity seeds... [0.329s] Searching alignments... [64.273s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.069s] Building query seed array... [2.589s] Computing hash join... [5.307s] Masking low complexity seeds... [0.32s] Searching alignments... [54.525s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.838s] Building query seed array... [2.106s] Computing hash join... [5.347s] Masking low complexity seeds... [0.321s] Searching alignments... [55.762s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.369s] Building query seed array... [1.934s] Computing hash join... [5.231s] Masking low complexity seeds... [0.308s] Searching alignments... [64.092s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.717s] Building query seed array... [2.308s] Computing hash join... [5.098s] Masking low complexity seeds... [0.319s] Searching alignments... [57.723s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.431s] Building query seed array... [2.379s] Computing hash join... [5.171s] Masking low complexity seeds... [0.315s] Searching alignments... [49.812s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.744s] Building query seed array... [1.984s] Computing hash join... [5.202s] Masking low complexity seeds... [0.305s] Searching alignments... [46.053s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.423s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.332s] Sorting trace points... [1.322s] Computing alignments... [33.603s] Deallocating buffers... [0.045s] Loading trace points... [1.094s] Sorting trace points... [1.12s] Computing alignments... [33.138s] Deallocating buffers... [0.046s] Loading trace points... [0.118s] Sorting trace points... [1.117s] Computing alignments... [34.196s] Deallocating buffers... [0.052s] Loading trace points... [0.034s] Sorting trace points... [1.452s] Computing alignments... [36.608s] Deallocating buffers... [0.042s] Loading trace points... [0.171s] Sorting trace points... [1.349s] Computing alignments... [33.724s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [1.17s] Computing alignments... [33.115s] Deallocating buffers... [0.052s] Loading trace points... [0.107s] Sorting trace points... [1.236s] Computing alignments... [33.607s] Deallocating buffers... [0.04s] Loading trace points... [0.061s] Sorting trace points... [1.041s] Computing alignments... [36.387s] Deallocating buffers... [0.042s] Loading trace points... [0.049s] Sorting trace points... [1.335s] Computing alignments... [33.101s] Deallocating buffers... [0.039s] Loading trace points... [0.097s] Sorting trace points... [1.031s] Computing alignments... [34.996s] Deallocating buffers... [0.049s] Loading trace points... [0.087s] Sorting trace points... [1.404s] Computing alignments... [34.736s] Deallocating buffers... [0.041s] Loading trace points... [0.123s] Sorting trace points... [1.125s] Computing alignments... [36.547s] Deallocating buffers... [0.042s] Loading trace points... [0.034s] Sorting trace points... [1.068s] Computing alignments... [34.538s] Deallocating buffers... [0.041s] Loading trace points... [0.063s] Sorting trace points... [1.423s] Computing alignments... [34.921s] Deallocating buffers... [0.049s] Loading trace points... [0.086s] Sorting trace points... [1.367s] Computing alignments... [34.469s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [1.127s] Computing alignments... [35.579s] Deallocating buffers... [0.039s] Loading trace points... [0s] [583.177s] Deallocating reference... [0.084s] Loading reference sequences... [29.716s] Masking reference... [30.924s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.288s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.544s] Building query seed array... [2.458s] Computing hash join... [5.353s] Masking low complexity seeds... [0.322s] Searching alignments... [148.772s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.598s] Building query seed array... [2.514s] Computing hash join... [5.316s] Masking low complexity seeds... [0.324s] Searching alignments... [63.8s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.147s] Building query seed array... [2.572s] Computing hash join... [5.301s] Masking low complexity seeds... [0.316s] Searching alignments... [54.892s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.488s] Building query seed array... [2.099s] Computing hash join... [5.356s] Masking low complexity seeds... [0.327s] Searching alignments... [55.472s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.102s] Building query seed array... [1.923s] Computing hash join... [5.094s] Masking low complexity seeds... [0.304s] Searching alignments... [61.726s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.403s] Building query seed array... [2.245s] Computing hash join... [5.088s] Masking low complexity seeds... [0.299s] Searching alignments... [60.842s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.498s] Building query seed array... [2.392s] Computing hash join... [5.092s] Masking low complexity seeds... [0.301s] Searching alignments... [48.735s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.573s] Building query seed array... [2.062s] Computing hash join... [5.137s] Masking low complexity seeds... [0.316s] Searching alignments... [46.073s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.57s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.057s] Sorting trace points... [1.363s] Computing alignments... [33.243s] Deallocating buffers... [0.043s] Loading trace points... [0.109s] Sorting trace points... [1.083s] Computing alignments... [32.589s] Deallocating buffers... [0.031s] Loading trace points... [0.073s] Sorting trace points... [1.304s] Computing alignments... [34.185s] Deallocating buffers... [0.04s] Loading trace points... [0.846s] Sorting trace points... [1.2s] Computing alignments... [36.058s] Deallocating buffers... [0.043s] Loading trace points... [0.075s] Sorting trace points... [1.277s] Computing alignments... [33.677s] Deallocating buffers... [0.025s] Loading trace points... [0.072s] Sorting trace points... [1.241s] Computing alignments... [32.509s] Deallocating buffers... [0.027s] Loading trace points... [0.118s] Sorting trace points... [1.376s] Computing alignments... [33.339s] Deallocating buffers... [0.032s] Loading trace points... [0.065s] Sorting trace points... [1.388s] Computing alignments... [36.371s] Deallocating buffers... [0.043s] Loading trace points... [0.097s] Sorting trace points... [0.993s] Computing alignments... [33.28s] Deallocating buffers... [0.043s] Loading trace points... [0.065s] Sorting trace points... [1.298s] Computing alignments... [34.825s] Deallocating buffers... [0.033s] Loading trace points... [0.076s] Sorting trace points... [1.063s] Computing alignments... [34.527s] Deallocating buffers... [0.031s] Loading trace points... [0.059s] Sorting trace points... [1.496s] Computing alignments... [36.552s] Deallocating buffers... [0.037s] Loading trace points... [0.078s] Sorting trace points... [1.363s] Computing alignments... [34.449s] Deallocating buffers... [0.028s] Loading trace points... [0.473s] Sorting trace points... [1.283s] Computing alignments... [34.686s] Deallocating buffers... [0.037s] Loading trace points... [0.064s] Sorting trace points... [1.336s] Computing alignments... [34.541s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.294s] Computing alignments... [35.538s] Deallocating buffers... [0.031s] Loading trace points... [0s] [580.782s] Deallocating reference... [0.07s] Loading reference sequences... [29.483s] Masking reference... [31.57s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.333s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.361s] Building query seed array... [2.147s] Computing hash join... [5.388s] Masking low complexity seeds... [0.33s] Searching alignments... [147.077s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.044s] Building query seed array... [2.478s] Computing hash join... [5.276s] Masking low complexity seeds... [0.322s] Searching alignments... [63.783s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.361s] Building query seed array... [2.572s] Computing hash join... [5.285s] Masking low complexity seeds... [0.317s] Searching alignments... [57.001s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.152s] Building query seed array... [2.157s] Computing hash join... [5.394s] Masking low complexity seeds... [0.332s] Searching alignments... [55.381s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.784s] Building query seed array... [1.946s] Computing hash join... [5.107s] Masking low complexity seeds... [0.313s] Searching alignments... [62.186s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.638s] Building query seed array... [2.261s] Computing hash join... [5.06s] Masking low complexity seeds... [0.31s] Searching alignments... [59.669s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.293s] Building query seed array... [2.319s] Computing hash join... [5.211s] Masking low complexity seeds... [0.323s] Searching alignments... [49.493s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.915s] Building query seed array... [1.961s] Computing hash join... [5.149s] Masking low complexity seeds... [0.301s] Searching alignments... [47.426s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.452s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.289s] Sorting trace points... [1.408s] Computing alignments... [32.88s] Deallocating buffers... [0.023s] Loading trace points... [0.078s] Sorting trace points... [1.012s] Computing alignments... [32.412s] Deallocating buffers... [0.025s] Loading trace points... [0.149s] Sorting trace points... [1.372s] Computing alignments... [33.809s] Deallocating buffers... [0.024s] Loading trace points... [0.047s] Sorting trace points... [1.353s] Computing alignments... [35.732s] Deallocating buffers... [0.03s] Loading trace points... [0.034s] Sorting trace points... [1.284s] Computing alignments... [33.064s] Deallocating buffers... [0.022s] Loading trace points... [0.085s] Sorting trace points... [1.302s] Computing alignments... [32.509s] Deallocating buffers... [0.021s] Loading trace points... [0.05s] Sorting trace points... [1.332s] Computing alignments... [33.196s] Deallocating buffers... [0.025s] Loading trace points... [0.049s] Sorting trace points... [1.426s] Computing alignments... [35.935s] Deallocating buffers... [0.018s] Loading trace points... [0.073s] Sorting trace points... [1.34s] Computing alignments... [32.937s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.036s] Computing alignments... [34.73s] Deallocating buffers... [0.03s] Loading trace points... [0.427s] Sorting trace points... [1.401s] Computing alignments... [34.101s] Deallocating buffers... [0.025s] Loading trace points... [0.06s] Sorting trace points... [1.412s] Computing alignments... [35.809s] Deallocating buffers... [0.025s] Loading trace points... [0.055s] Sorting trace points... [1.321s] Computing alignments... [33.792s] Deallocating buffers... [0.024s] Loading trace points... [0.065s] Sorting trace points... [1.124s] Computing alignments... [34.37s] Deallocating buffers... [0.027s] Loading trace points... [0.071s] Sorting trace points... [1.374s] Computing alignments... [34.237s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.135s] Computing alignments... [34.67s] Deallocating buffers... [0.028s] Loading trace points... [0s] [574.45s] Deallocating reference... [0.076s] Loading reference sequences... [31.492s] Masking reference... [32.21s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [31.679s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.034s] Building query seed array... [2.17s] Computing hash join... [5.362s] Masking low complexity seeds... [0.328s] Searching alignments... [144.978s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.277s] Building query seed array... [2.476s] Computing hash join... [5.341s] Masking low complexity seeds... [0.318s] Searching alignments... [61.643s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.43s] Building query seed array... [2.642s] Computing hash join... [5.384s] Masking low complexity seeds... [0.318s] Searching alignments... [54.524s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.03s] Building query seed array... [2.061s] Computing hash join... [5.281s] Masking low complexity seeds... [0.326s] Searching alignments... [56.25s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.198s] Building query seed array... [1.913s] Computing hash join... [5.111s] Masking low complexity seeds... [0.309s] Searching alignments... [64.001s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.916s] Building query seed array... [2.298s] Computing hash join... [5.121s] Masking low complexity seeds... [0.331s] Searching alignments... [58.32s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.204s] Building query seed array... [2.44s] Computing hash join... [5.144s] Masking low complexity seeds... [0.316s] Searching alignments... [48.999s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.764s] Building query seed array... [1.987s] Computing hash join... [5.208s] Masking low complexity seeds... [0.311s] Searching alignments... [47.886s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.455s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.108s] Sorting trace points... [1.359s] Computing alignments... [33.619s] Deallocating buffers... [0.037s] Loading trace points... [0.089s] Sorting trace points... [1.052s] Computing alignments... [33.169s] Deallocating buffers... [0.032s] Loading trace points... [0.718s] Sorting trace points... [1.376s] Computing alignments... [34.869s] Deallocating buffers... [0.036s] Loading trace points... [0.046s] Sorting trace points... [1.288s] Computing alignments... [36.994s] Deallocating buffers... [0.035s] Loading trace points... [0.085s] Sorting trace points... [1.339s] Computing alignments... [34.075s] Deallocating buffers... [0.029s] Loading trace points... [0.002s] Sorting trace points... [1.339s] Computing alignments... [32.85s] Deallocating buffers... [0.036s] Loading trace points... [0.066s] Sorting trace points... [1.175s] Computing alignments... [33.735s] Deallocating buffers... [0.028s] Loading trace points... [1.037s] Sorting trace points... [1.422s] Computing alignments... [36.909s] Deallocating buffers... [0.023s] Loading trace points... [0.058s] Sorting trace points... [1.016s] Computing alignments... [33.795s] Deallocating buffers... [0.03s] Loading trace points... [0.069s] Sorting trace points... [1.1s] Computing alignments... [35.44s] Deallocating buffers... [0.033s] Loading trace points... [0.084s] Sorting trace points... [1.121s] Computing alignments... [35.072s] Deallocating buffers... [0.034s] Loading trace points... [0.072s] Sorting trace points... [1.413s] Computing alignments... [36.431s] Deallocating buffers... [0.031s] Loading trace points... [0.04s] Sorting trace points... [1.072s] Computing alignments... [34.868s] Deallocating buffers... [0.031s] Loading trace points... [0.077s] Sorting trace points... [1.025s] Computing alignments... [35.18s] Deallocating buffers... [0.041s] Loading trace points... [0.073s] Sorting trace points... [1.312s] Computing alignments... [35.172s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.385s] Computing alignments... [35.818s] Deallocating buffers... [0.034s] Loading trace points... [0s] [587.989s] Deallocating reference... [0.072s] Loading reference sequences... [29.571s] Masking reference... [30.86s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.39s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.648s] Building query seed array... [2.161s] Computing hash join... [5.341s] Masking low complexity seeds... [0.324s] Searching alignments... [146.137s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.552s] Building query seed array... [2.495s] Computing hash join... [5.399s] Masking low complexity seeds... [0.325s] Searching alignments... [62.342s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.361s] Building query seed array... [2.579s] Computing hash join... [5.335s] Masking low complexity seeds... [0.316s] Searching alignments... [56.703s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.84s] Building query seed array... [2.163s] Computing hash join... [5.22s] Masking low complexity seeds... [0.315s] Searching alignments... [55.897s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.285s] Building query seed array... [1.969s] Computing hash join... [5.071s] Masking low complexity seeds... [0.31s] Searching alignments... [59.623s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.029s] Building query seed array... [2.299s] Computing hash join... [5.084s] Masking low complexity seeds... [0.307s] Searching alignments... [59.875s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.168s] Building query seed array... [2.374s] Computing hash join... [5.1s] Masking low complexity seeds... [0.31s] Searching alignments... [50.264s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.649s] Building query seed array... [1.935s] Computing hash join... [5.18s] Masking low complexity seeds... [0.315s] Searching alignments... [46.397s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.42s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.988s] Sorting trace points... [1.307s] Computing alignments... [33.038s] Deallocating buffers... [0.023s] Loading trace points... [0.069s] Sorting trace points... [1.322s] Computing alignments... [32.815s] Deallocating buffers... [0.026s] Loading trace points... [0.075s] Sorting trace points... [1.347s] Computing alignments... [33.737s] Deallocating buffers... [0.028s] Loading trace points... [0.046s] Sorting trace points... [1.443s] Computing alignments... [35.889s] Deallocating buffers... [0.032s] Loading trace points... [0.098s] Sorting trace points... [1.223s] Computing alignments... [33.043s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.296s] Computing alignments... [32.207s] Deallocating buffers... [0.023s] Loading trace points... [0.073s] Sorting trace points... [1.243s] Computing alignments... [33.222s] Deallocating buffers... [0.02s] Loading trace points... [0.069s] Sorting trace points... [1.425s] Computing alignments... [36.083s] Deallocating buffers... [0.03s] Loading trace points... [0.046s] Sorting trace points... [1.332s] Computing alignments... [33.301s] Deallocating buffers... [0.025s] Loading trace points... [0.842s] Sorting trace points... [1.405s] Computing alignments... [34.928s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [1.408s] Computing alignments... [34.339s] Deallocating buffers... [0.018s] Loading trace points... [0.053s] Sorting trace points... [1.238s] Computing alignments... [36.001s] Deallocating buffers... [0.026s] Loading trace points... [0.071s] Sorting trace points... [1.333s] Computing alignments... [34.273s] Deallocating buffers... [0.028s] Loading trace points... [0.094s] Sorting trace points... [1.405s] Computing alignments... [34.323s] Deallocating buffers... [0.024s] Loading trace points... [0.085s] Sorting trace points... [1.365s] Computing alignments... [34.429s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.287s] Computing alignments... [35.737s] Deallocating buffers... [0.027s] Loading trace points... [0s] [577.873s] Deallocating reference... [0.075s] Loading reference sequences... [29.513s] Masking reference... [30.873s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.556s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.306s] Building query seed array... [2.157s] Computing hash join... [5.406s] Masking low complexity seeds... [0.338s] Searching alignments... [142.162s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.149s] Building query seed array... [2.484s] Computing hash join... [5.385s] Masking low complexity seeds... [0.328s] Searching alignments... [64.569s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.201s] Building query seed array... [2.641s] Computing hash join... [5.283s] Masking low complexity seeds... [0.322s] Searching alignments... [55.27s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.109s] Building query seed array... [2.052s] Computing hash join... [5.222s] Masking low complexity seeds... [0.322s] Searching alignments... [55.021s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.965s] Building query seed array... [1.982s] Computing hash join... [5.095s] Masking low complexity seeds... [0.303s] Searching alignments... [60.375s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.268s] Building query seed array... [2.282s] Computing hash join... [5.185s] Masking low complexity seeds... [0.312s] Searching alignments... [57.555s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.093s] Building query seed array... [2.369s] Computing hash join... [5.195s] Masking low complexity seeds... [0.315s] Searching alignments... [49.413s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.158s] Building query seed array... [1.971s] Computing hash join... [5.167s] Masking low complexity seeds... [0.307s] Searching alignments... [46.011s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.447s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.665s] Sorting trace points... [1.326s] Computing alignments... [33.007s] Deallocating buffers... [0.024s] Loading trace points... [0.141s] Sorting trace points... [0.995s] Computing alignments... [32.744s] Deallocating buffers... [0.026s] Loading trace points... [0.086s] Sorting trace points... [1.33s] Computing alignments... [33.596s] Deallocating buffers... [0.016s] Loading trace points... [0.039s] Sorting trace points... [1.403s] Computing alignments... [35.903s] Deallocating buffers... [0.026s] Loading trace points... [0.12s] Sorting trace points... [1.029s] Computing alignments... [33.157s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.196s] Computing alignments... [32.176s] Deallocating buffers... [0.023s] Loading trace points... [0.11s] Sorting trace points... [1.301s] Computing alignments... [33.272s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [1.429s] Computing alignments... [36.146s] Deallocating buffers... [0.025s] Loading trace points... [0.073s] Sorting trace points... [1.235s] Computing alignments... [33.094s] Deallocating buffers... [0.025s] Loading trace points... [0.073s] Sorting trace points... [1.069s] Computing alignments... [34.843s] Deallocating buffers... [0.027s] Loading trace points... [0.103s] Sorting trace points... [1.375s] Computing alignments... [34.478s] Deallocating buffers... [0.029s] Loading trace points... [0.067s] Sorting trace points... [1.464s] Computing alignments... [36.22s] Deallocating buffers... [0.026s] Loading trace points... [0.063s] Sorting trace points... [1.197s] Computing alignments... [34.285s] Deallocating buffers... [0.027s] Loading trace points... [0.064s] Sorting trace points... [1.342s] Computing alignments... [34.082s] Deallocating buffers... [0.024s] Loading trace points... [0.056s] Sorting trace points... [0.986s] Computing alignments... [34.514s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.429s] Computing alignments... [35.729s] Deallocating buffers... [0.026s] Loading trace points... [0s] [576.512s] Deallocating reference... [0.077s] Loading reference sequences... [30.21s] Masking reference... [30.865s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.757s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.283s] Building query seed array... [2.169s] Computing hash join... [5.469s] Masking low complexity seeds... [0.32s] Searching alignments... [144.827s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.303s] Building query seed array... [2.477s] Computing hash join... [5.309s] Masking low complexity seeds... [0.323s] Searching alignments... [61.438s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.483s] Building query seed array... [2.586s] Computing hash join... [5.235s] Masking low complexity seeds... [0.317s] Searching alignments... [54.684s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.134s] Building query seed array... [2.152s] Computing hash join... [5.284s] Masking low complexity seeds... [0.318s] Searching alignments... [55.773s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.752s] Building query seed array... [1.95s] Computing hash join... [5.082s] Masking low complexity seeds... [0.308s] Searching alignments... [60.133s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.621s] Building query seed array... [2.264s] Computing hash join... [5.118s] Masking low complexity seeds... [0.309s] Searching alignments... [59.436s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.514s] Building query seed array... [2.404s] Computing hash join... [5.181s] Masking low complexity seeds... [0.307s] Searching alignments... [50.068s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.916s] Building query seed array... [1.973s] Computing hash join... [5.182s] Masking low complexity seeds... [0.314s] Searching alignments... [45.534s] Deallocating memory... [0s] Deallocating buffers... [0.126s] Clearing query masking... [1.422s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.711s] Sorting trace points... [1.311s] Computing alignments... [32.367s] Deallocating buffers... [0.024s] Loading trace points... [0.074s] Sorting trace points... [1.238s] Computing alignments... [32.114s] Deallocating buffers... [0.024s] Loading trace points... [0.081s] Sorting trace points... [1.389s] Computing alignments... [33.023s] Deallocating buffers... [0.023s] Loading trace points... [0.04s] Sorting trace points... [1.237s] Computing alignments... [35.326s] Deallocating buffers... [0.027s] Loading trace points... [0.085s] Sorting trace points... [1.229s] Computing alignments... [32.942s] Deallocating buffers... [0.026s] Loading trace points... [0.076s] Sorting trace points... [1.314s] Computing alignments... [31.961s] Deallocating buffers... [0.023s] Loading trace points... [0.094s] Sorting trace points... [1.34s] Computing alignments... [32.728s] Deallocating buffers... [0.025s] Loading trace points... [0.665s] Sorting trace points... [1.165s] Computing alignments... [35.622s] Deallocating buffers... [0.028s] Loading trace points... [0.063s] Sorting trace points... [1.033s] Computing alignments... [32.54s] Deallocating buffers... [0.019s] Loading trace points... [0.065s] Sorting trace points... [1.194s] Computing alignments... [34.309s] Deallocating buffers... [0.024s] Loading trace points... [0.073s] Sorting trace points... [1.148s] Computing alignments... [33.961s] Deallocating buffers... [0.028s] Loading trace points... [0.058s] Sorting trace points... [1.5s] Computing alignments... [35.241s] Deallocating buffers... [0.025s] Loading trace points... [0.002s] Sorting trace points... [1.106s] Computing alignments... [33.435s] Deallocating buffers... [0.025s] Loading trace points... [0.101s] Sorting trace points... [1.365s] Computing alignments... [33.8s] Deallocating buffers... [0.027s] Loading trace points... [0.057s] Sorting trace points... [1.382s] Computing alignments... [33.612s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.448s] Computing alignments... [34.422s] Deallocating buffers... [0.028s] Loading trace points... [0s] [567.488s] Deallocating reference... [0.069s] Loading reference sequences... [29.698s] Masking reference... [32.189s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [31.936s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.296s] Building query seed array... [2.208s] Computing hash join... [5.384s] Masking low complexity seeds... [0.321s] Searching alignments... [145.829s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.856s] Building query seed array... [2.406s] Computing hash join... [5.381s] Masking low complexity seeds... [0.324s] Searching alignments... [66.751s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.255s] Building query seed array... [2.601s] Computing hash join... [5.381s] Masking low complexity seeds... [0.331s] Searching alignments... [54.193s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.906s] Building query seed array... [2.143s] Computing hash join... [5.255s] Masking low complexity seeds... [0.319s] Searching alignments... [55.819s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.966s] Building query seed array... [1.937s] Computing hash join... [5.118s] Masking low complexity seeds... [0.305s] Searching alignments... [62.565s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.549s] Building query seed array... [2.229s] Computing hash join... [5.122s] Masking low complexity seeds... [0.296s] Searching alignments... [59.182s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.399s] Building query seed array... [2.342s] Computing hash join... [5.207s] Masking low complexity seeds... [0.303s] Searching alignments... [50.461s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [1.961s] Computing hash join... [5.12s] Masking low complexity seeds... [0.304s] Searching alignments... [46.25s] Deallocating memory... [0s] Deallocating buffers... [0.128s] Clearing query masking... [1.492s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.055s] Sorting trace points... [1.367s] Computing alignments... [33.189s] Deallocating buffers... [0.028s] Loading trace points... [0.083s] Sorting trace points... [1.081s] Computing alignments... [32.407s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.392s] Computing alignments... [33.691s] Deallocating buffers... [0.033s] Loading trace points... [0.054s] Sorting trace points... [1.223s] Computing alignments... [35.823s] Deallocating buffers... [0.032s] Loading trace points... [0.847s] Sorting trace points... [1.229s] Computing alignments... [33.142s] Deallocating buffers... [0.03s] Loading trace points... [0.061s] Sorting trace points... [1.295s] Computing alignments... [32.24s] Deallocating buffers... [0.031s] Loading trace points... [0.09s] Sorting trace points... [1.331s] Computing alignments... [33.149s] Deallocating buffers... [0.03s] Loading trace points... [0.069s] Sorting trace points... [1.415s] Computing alignments... [35.957s] Deallocating buffers... [0.031s] Loading trace points... [0.08s] Sorting trace points... [1.381s] Computing alignments... [32.749s] Deallocating buffers... [0.025s] Loading trace points... [0.067s] Sorting trace points... [1.341s] Computing alignments... [34.721s] Deallocating buffers... [0.024s] Loading trace points... [0.087s] Sorting trace points... [1.39s] Computing alignments... [34.504s] Deallocating buffers... [0.035s] Loading trace points... [0.074s] Sorting trace points... [1.395s] Computing alignments... [35.623s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.231s] Computing alignments... [34.123s] Deallocating buffers... [0.026s] Loading trace points... [0.105s] Sorting trace points... [1.064s] Computing alignments... [34.456s] Deallocating buffers... [0.032s] Loading trace points... [0.059s] Sorting trace points... [1.353s] Computing alignments... [34.18s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.191s] Computing alignments... [34.698s] Deallocating buffers... [0.033s] Loading trace points... [0s] [574.707s] Deallocating reference... [0.078s] Loading reference sequences... [29.581s] Masking reference... [31.567s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.798s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.262s] Building query seed array... [2.223s] Computing hash join... [5.534s] Masking low complexity seeds... [0.335s] Searching alignments... [145.403s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.25s] Building query seed array... [2.491s] Computing hash join... [5.267s] Masking low complexity seeds... [0.317s] Searching alignments... [62.239s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.269s] Building query seed array... [2.576s] Computing hash join... [5.297s] Masking low complexity seeds... [0.315s] Searching alignments... [53.461s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.116s] Building query seed array... [2.092s] Computing hash join... [5.285s] Masking low complexity seeds... [0.319s] Searching alignments... [54.745s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.142s] Building query seed array... [2.014s] Computing hash join... [5.08s] Masking low complexity seeds... [0.303s] Searching alignments... [60.421s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.454s] Building query seed array... [2.239s] Computing hash join... [5.168s] Masking low complexity seeds... [0.305s] Searching alignments... [59.566s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.766s] Building query seed array... [2.446s] Computing hash join... [5.139s] Masking low complexity seeds... [0.306s] Searching alignments... [49.041s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.453s] Building query seed array... [1.998s] Computing hash join... [5.168s] Masking low complexity seeds... [0.308s] Searching alignments... [45.743s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [1.425s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.151s] Sorting trace points... [1.403s] Computing alignments... [31.093s] Deallocating buffers... [0.023s] Loading trace points... [0.103s] Sorting trace points... [1.163s] Computing alignments... [31.028s] Deallocating buffers... [0.025s] Loading trace points... [0.058s] Sorting trace points... [1.325s] Computing alignments... [31.584s] Deallocating buffers... [0.021s] Loading trace points... [0.037s] Sorting trace points... [1.043s] Computing alignments... [34.087s] Deallocating buffers... [0.027s] Loading trace points... [0.062s] Sorting trace points... [1.289s] Computing alignments... [31.293s] Deallocating buffers... [0.023s] Loading trace points... [0.099s] Sorting trace points... [1.323s] Computing alignments... [30.846s] Deallocating buffers... [0.024s] Loading trace points... [0.066s] Sorting trace points... [1.334s] Computing alignments... [31.661s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.061s] Computing alignments... [34.216s] Deallocating buffers... [0.026s] Loading trace points... [0.081s] Sorting trace points... [1.369s] Computing alignments... [31.461s] Deallocating buffers... [0.023s] Loading trace points... [0.075s] Sorting trace points... [1.266s] Computing alignments... [32.854s] Deallocating buffers... [0.019s] Loading trace points... [0.073s] Sorting trace points... [1.224s] Computing alignments... [32.5s] Deallocating buffers... [0.026s] Loading trace points... [0.079s] Sorting trace points... [1.368s] Computing alignments... [34.084s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.654s] Computing alignments... [32.016s] Deallocating buffers... [0.028s] Loading trace points... [0.078s] Sorting trace points... [1.316s] Computing alignments... [32.273s] Deallocating buffers... [0.024s] Loading trace points... [0.048s] Sorting trace points... [1.129s] Computing alignments... [32.19s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.076s] Computing alignments... [33.242s] Deallocating buffers... [0.026s] Loading trace points... [0s] [545.37s] Deallocating reference... [0.071s] Loading reference sequences... [29.76s] Masking reference... [32.03s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.048s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.363s] Building query seed array... [2.183s] Computing hash join... [5.358s] Masking low complexity seeds... [0.322s] Searching alignments... [145.691s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.217s] Building query seed array... [2.494s] Computing hash join... [5.376s] Masking low complexity seeds... [0.328s] Searching alignments... [63.317s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.776s] Building query seed array... [2.561s] Computing hash join... [5.304s] Masking low complexity seeds... [0.324s] Searching alignments... [54.166s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.38s] Building query seed array... [2.129s] Computing hash join... [5.338s] Masking low complexity seeds... [0.323s] Searching alignments... [56.048s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.933s] Building query seed array... [1.942s] Computing hash join... [5.079s] Masking low complexity seeds... [0.309s] Searching alignments... [60.021s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.42s] Building query seed array... [2.293s] Computing hash join... [5.219s] Masking low complexity seeds... [0.313s] Searching alignments... [59.752s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.276s] Building query seed array... [2.404s] Computing hash join... [5.169s] Masking low complexity seeds... [0.316s] Searching alignments... [48.702s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.285s] Building query seed array... [1.977s] Computing hash join... [5.098s] Masking low complexity seeds... [0.311s] Searching alignments... [45.95s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.493s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.164s] Sorting trace points... [1.335s] Computing alignments... [34.261s] Deallocating buffers... [0.031s] Loading trace points... [0.154s] Sorting trace points... [1.319s] Computing alignments... [33.491s] Deallocating buffers... [0.025s] Loading trace points... [0.165s] Sorting trace points... [1.293s] Computing alignments... [35.064s] Deallocating buffers... [0.03s] Loading trace points... [0.046s] Sorting trace points... [1.262s] Computing alignments... [36.727s] Deallocating buffers... [0.034s] Loading trace points... [0.004s] Sorting trace points... [1.355s] Computing alignments... [34.475s] Deallocating buffers... [0.027s] Loading trace points... [0.07s] Sorting trace points... [1.312s] Computing alignments... [33.433s] Deallocating buffers... [0.031s] Loading trace points... [0.001s] Sorting trace points... [1.063s] Computing alignments... [34.181s] Deallocating buffers... [0.034s] Loading trace points... [0.085s] Sorting trace points... [1.377s] Computing alignments... [37.532s] Deallocating buffers... [0.031s] Loading trace points... [0.057s] Sorting trace points... [1.352s] Computing alignments... [34.041s] Deallocating buffers... [0.031s] Loading trace points... [0.072s] Sorting trace points... [1.322s] Computing alignments... [35.724s] Deallocating buffers... [0.028s] Loading trace points... [0.001s] Sorting trace points... [1.38s] Computing alignments... [35.531s] Deallocating buffers... [0.029s] Loading trace points... [0.052s] Sorting trace points... [1.102s] Computing alignments... [37.576s] Deallocating buffers... [0.033s] Loading trace points... [0.079s] Sorting trace points... [1.349s] Computing alignments... [35.465s] Deallocating buffers... [0.025s] Loading trace points... [0.097s] Sorting trace points... [1.114s] Computing alignments... [35.627s] Deallocating buffers... [0.029s] Loading trace points... [0.071s] Sorting trace points... [1.093s] Computing alignments... [35.635s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.486s] Computing alignments... [36.732s] Deallocating buffers... [0.032s] Loading trace points... [0s] [594.698s] Deallocating reference... [0.081s] Loading reference sequences... [29.515s] Masking reference... [30.886s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.863s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.841s] Building query seed array... [2.162s] Computing hash join... [5.27s] Masking low complexity seeds... [0.316s] Searching alignments... [141.881s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.484s] Building query seed array... [2.568s] Computing hash join... [5.311s] Masking low complexity seeds... [0.319s] Searching alignments... [64.915s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.331s] Building query seed array... [2.623s] Computing hash join... [5.366s] Masking low complexity seeds... [0.326s] Searching alignments... [54.863s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.913s] Building query seed array... [2.124s] Computing hash join... [5.227s] Masking low complexity seeds... [0.316s] Searching alignments... [55.799s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.049s] Building query seed array... [1.958s] Computing hash join... [5.236s] Masking low complexity seeds... [0.308s] Searching alignments... [61.288s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.046s] Building query seed array... [2.359s] Computing hash join... [5.089s] Masking low complexity seeds... [0.315s] Searching alignments... [60.897s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.343s] Building query seed array... [2.413s] Computing hash join... [5.148s] Masking low complexity seeds... [0.311s] Searching alignments... [49.817s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.924s] Building query seed array... [1.987s] Computing hash join... [5.161s] Masking low complexity seeds... [0.325s] Searching alignments... [46.553s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [1.466s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.159s] Sorting trace points... [1.36s] Computing alignments... [33.924s] Deallocating buffers... [0.032s] Loading trace points... [0.001s] Sorting trace points... [1.015s] Computing alignments... [33.351s] Deallocating buffers... [0.028s] Loading trace points... [0.084s] Sorting trace points... [1.363s] Computing alignments... [34.523s] Deallocating buffers... [0.026s] Loading trace points... [0.057s] Sorting trace points... [1.127s] Computing alignments... [36.58s] Deallocating buffers... [0.035s] Loading trace points... [0.074s] Sorting trace points... [1.173s] Computing alignments... [33.812s] Deallocating buffers... [0.027s] Loading trace points... [0.06s] Sorting trace points... [1.287s] Computing alignments... [32.963s] Deallocating buffers... [0.026s] Loading trace points... [0.063s] Sorting trace points... [1.385s] Computing alignments... [33.999s] Deallocating buffers... [0.026s] Loading trace points... [0.068s] Sorting trace points... [1.26s] Computing alignments... [36.571s] Deallocating buffers... [0.031s] Loading trace points... [0.072s] Sorting trace points... [1.301s] Computing alignments... [33.845s] Deallocating buffers... [0.027s] Loading trace points... [0.001s] Sorting trace points... [1.409s] Computing alignments... [35.459s] Deallocating buffers... [0.031s] Loading trace points... [0.038s] Sorting trace points... [1.383s] Computing alignments... [35.027s] Deallocating buffers... [0.031s] Loading trace points... [0.711s] Sorting trace points... [1.507s] Computing alignments... [36.834s] Deallocating buffers... [0.032s] Loading trace points... [0.072s] Sorting trace points... [1.317s] Computing alignments... [35.133s] Deallocating buffers... [0.029s] Loading trace points... [0.071s] Sorting trace points... [1.052s] Computing alignments... [35.057s] Deallocating buffers... [0.031s] Loading trace points... [0.081s] Sorting trace points... [1.318s] Computing alignments... [35.211s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.457s] Computing alignments... [36.213s] Deallocating buffers... [0.031s] Loading trace points... [0s] [588.353s] Deallocating reference... [0.079s] Loading reference sequences... [29.694s] Masking reference... [31.555s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.049s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.151s] Building query seed array... [2.123s] Computing hash join... [5.406s] Masking low complexity seeds... [0.324s] Searching alignments... [147.333s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.118s] Building query seed array... [2.474s] Computing hash join... [5.376s] Masking low complexity seeds... [0.326s] Searching alignments... [61.433s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.497s] Building query seed array... [2.638s] Computing hash join... [5.306s] Masking low complexity seeds... [0.321s] Searching alignments... [54.309s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.254s] Building query seed array... [2.077s] Computing hash join... [5.291s] Masking low complexity seeds... [0.321s] Searching alignments... [54.798s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.955s] Building query seed array... [1.967s] Computing hash join... [5.125s] Masking low complexity seeds... [0.31s] Searching alignments... [61.266s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.359s] Building query seed array... [2.238s] Computing hash join... [5.139s] Masking low complexity seeds... [0.312s] Searching alignments... [59.017s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.382s] Building query seed array... [2.346s] Computing hash join... [5.175s] Masking low complexity seeds... [0.313s] Searching alignments... [48.78s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.187s] Building query seed array... [2.014s] Computing hash join... [5.142s] Masking low complexity seeds... [0.302s] Searching alignments... [46.687s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.496s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.024s] Sorting trace points... [1.335s] Computing alignments... [32.505s] Deallocating buffers... [0.027s] Loading trace points... [0.065s] Sorting trace points... [1.25s] Computing alignments... [32.246s] Deallocating buffers... [0.03s] Loading trace points... [0.099s] Sorting trace points... [1.118s] Computing alignments... [33.209s] Deallocating buffers... [0.028s] Loading trace points... [0.05s] Sorting trace points... [1.409s] Computing alignments... [35.384s] Deallocating buffers... [0.036s] Loading trace points... [0.067s] Sorting trace points... [1.319s] Computing alignments... [32.798s] Deallocating buffers... [0.027s] Loading trace points... [0.002s] Sorting trace points... [1.331s] Computing alignments... [32.107s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.32s] Computing alignments... [32.923s] Deallocating buffers... [0.025s] Loading trace points... [0.07s] Sorting trace points... [1.414s] Computing alignments... [35.891s] Deallocating buffers... [0.033s] Loading trace points... [0.06s] Sorting trace points... [1.315s] Computing alignments... [32.885s] Deallocating buffers... [0.03s] Loading trace points... [0.096s] Sorting trace points... [1.109s] Computing alignments... [34.085s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.389s] Computing alignments... [33.867s] Deallocating buffers... [0.034s] Loading trace points... [0.068s] Sorting trace points... [1.454s] Computing alignments... [35.628s] Deallocating buffers... [0.037s] Loading trace points... [0.062s] Sorting trace points... [1.354s] Computing alignments... [33.676s] Deallocating buffers... [0.03s] Loading trace points... [0.091s] Sorting trace points... [1.016s] Computing alignments... [33.89s] Deallocating buffers... [0.026s] Loading trace points... [0.081s] Sorting trace points... [1.321s] Computing alignments... [33.856s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.288s] Computing alignments... [35.401s] Deallocating buffers... [0.036s] Loading trace points... [0s] [569.51s] Deallocating reference... [0.075s] Loading reference sequences... [23.958s] Masking reference... [26.011s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.444s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.241s] Building query seed array... [2.197s] Computing hash join... [4.428s] Masking low complexity seeds... [0.301s] Searching alignments... [116.778s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.025s] Building query seed array... [2.499s] Computing hash join... [4.464s] Masking low complexity seeds... [0.31s] Searching alignments... [49.615s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.139s] Building query seed array... [2.552s] Computing hash join... [4.433s] Masking low complexity seeds... [0.304s] Searching alignments... [44.854s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.211s] Building query seed array... [2.091s] Computing hash join... [4.422s] Masking low complexity seeds... [0.304s] Searching alignments... [46.511s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.336s] Building query seed array... [1.969s] Computing hash join... [4.225s] Masking low complexity seeds... [0.296s] Searching alignments... [47.451s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.778s] Building query seed array... [2.296s] Computing hash join... [4.262s] Masking low complexity seeds... [0.301s] Searching alignments... [47.015s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.995s] Building query seed array... [2.35s] Computing hash join... [4.292s] Masking low complexity seeds... [0.295s] Searching alignments... [40.04s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.224s] Building query seed array... [2.022s] Computing hash join... [4.299s] Masking low complexity seeds... [0.303s] Searching alignments... [38.347s] Deallocating memory... [0s] Deallocating buffers... [0.115s] Clearing query masking... [1.425s] Opening temporary output file... [0.021s] Computing alignments... Loading trace points... [5.997s] Sorting trace points... [1.059s] Computing alignments... [25.74s] Deallocating buffers... [0.019s] Loading trace points... [0.089s] Sorting trace points... [1.061s] Computing alignments... [25.478s] Deallocating buffers... [0.019s] Loading trace points... [0.06s] Sorting trace points... [1.077s] Computing alignments... [26.19s] Deallocating buffers... [0.022s] Loading trace points... [0.064s] Sorting trace points... [1.16s] Computing alignments... [28.062s] Deallocating buffers... [0.024s] Loading trace points... [0.066s] Sorting trace points... [1.022s] Computing alignments... [26.029s] Deallocating buffers... [0.023s] Loading trace points... [0.047s] Sorting trace points... [1.019s] Computing alignments... [25.496s] Deallocating buffers... [0.018s] Loading trace points... [0.064s] Sorting trace points... [1.107s] Computing alignments... [26.11s] Deallocating buffers... [0.02s] Loading trace points... [0.05s] Sorting trace points... [1.03s] Computing alignments... [28.249s] Deallocating buffers... [0.021s] Loading trace points... [0.076s] Sorting trace points... [1.009s] Computing alignments... [25.72s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.152s] Computing alignments... [27.236s] Deallocating buffers... [0.023s] Loading trace points... [0.082s] Sorting trace points... [0.876s] Computing alignments... [26.807s] Deallocating buffers... [0.021s] Loading trace points... [0.064s] Sorting trace points... [0.991s] Computing alignments... [28.197s] Deallocating buffers... [0.016s] Loading trace points... [0.041s] Sorting trace points... [1.033s] Computing alignments... [26.508s] Deallocating buffers... [0.02s] Loading trace points... [0.059s] Sorting trace points... [1.11s] Computing alignments... [26.936s] Deallocating buffers... [0.02s] Loading trace points... [0.068s] Sorting trace points... [0.972s] Computing alignments... [26.662s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.112s] Computing alignments... [27.262s] Deallocating buffers... [0.021s] Loading trace points... [0s] [450.8s] Deallocating reference... [0.061s] Loading reference sequences... [0.197s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1406.17s] [1406.17s] Deallocating queries... [0.051s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [5.628s] [7.373s] Closing the database... [0s] Cleaning up... [0s] Total time = 20328.8s Reported 1322011871 pairwise alignments, 1322011871 HSPs. 6048342 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-13.trimmed.R1.fastq.gz complete: CH09-13.trimmed.R1.blastx.meganized.daa Now MEGANizing CH09-13.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH09-13.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (393.9s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.9s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2,322.5s) Total reads: 6,048,342 With hits: 6,048,342 Alignments: 1,008,822,848 Assig. Taxonomy: 2,770,562 Assig. SEED: 774,080 Assig. EGGNOG: 331,800 Assig. GTDB: 1,640,101 Assig. EC: 738,109 Assig. INTERPRO2GO: 895,980 MinSupport set to: 3024 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 13,661 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (49.7s) Min-supp. changes: 13,669 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (82.7s) Binning reads Syncing 100% (0.5s) Class. Taxonomy: 230 Class. SEED: 585 Class. EGGNOG: 2,133 Class. GTDB: 104 Class. EC: 2,944 Class. INTERPRO2GO: 9,715 Total time: 2,860s Peak memory: 33.3 of 195.3G MEGANization of CH09-13.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-13.trimmed.R2.fastq.gz... c043735f08b8b64b900107c4638b4e47 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-13.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-13.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.562s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.726s] Opening the output file... [0s] Loading query sequences... [82.362s] Masking queries... [22.289s] Algorithm: Double-indexed Building query histograms... [17.08s] Loading reference sequences... [31.832s] Masking reference... [32.118s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.01s] Building reference histograms... [32.667s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.025s] Building query seed array... [2.221s] Computing hash join... [5.449s] Masking low complexity seeds... [0.315s] Searching alignments... [152.812s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.758s] Building query seed array... [2.419s] Computing hash join... [5.299s] Masking low complexity seeds... [0.33s] Searching alignments... [65.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.208s] Building query seed array... [2.552s] Computing hash join... [5.36s] Masking low complexity seeds... [0.322s] Searching alignments... [58.748s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.89s] Building query seed array... [2.09s] Computing hash join... [5.362s] Masking low complexity seeds... [0.312s] Searching alignments... [58.087s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.054s] Building query seed array... [1.976s] Computing hash join... [5.083s] Masking low complexity seeds... [0.302s] Searching alignments... [64.768s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.351s] Building query seed array... [2.3s] Computing hash join... [5.13s] Masking low complexity seeds... [0.303s] Searching alignments... [63.379s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.967s] Building query seed array... [2.316s] Computing hash join... [5.134s] Masking low complexity seeds... [0.3s] Searching alignments... [50.283s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.863s] Building query seed array... [2.051s] Computing hash join... [5.231s] Masking low complexity seeds... [0.311s] Searching alignments... [48.58s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.47s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.367s] Sorting trace points... [1.379s] Computing alignments... [34.352s] Deallocating buffers... [0.02s] Loading trace points... [0.07s] Sorting trace points... [1.053s] Computing alignments... [33.968s] Deallocating buffers... [0.027s] Loading trace points... [0.001s] Sorting trace points... [1.238s] Computing alignments... [33.483s] Deallocating buffers... [0.021s] Loading trace points... [0.091s] Sorting trace points... [1.443s] Computing alignments... [35.344s] Deallocating buffers... [0.026s] Loading trace points... [0.048s] Sorting trace points... [1.331s] Computing alignments... [33.299s] Deallocating buffers... [0.017s] Loading trace points... [0.041s] Sorting trace points... [1.328s] Computing alignments... [33.32s] Deallocating buffers... [0.028s] Loading trace points... [0.079s] Sorting trace points... [1.4s] Computing alignments... [33.998s] Deallocating buffers... [0.025s] Loading trace points... [0.208s] Sorting trace points... [1.422s] Computing alignments... [35.221s] Deallocating buffers... [0.026s] Loading trace points... [0.14s] Sorting trace points... [1.258s] Computing alignments... [34.005s] Deallocating buffers... [0.027s] Loading trace points... [0.066s] Sorting trace points... [1.384s] Computing alignments... [34.613s] Deallocating buffers... [0.025s] Loading trace points... [0.103s] Sorting trace points... [1.388s] Computing alignments... [34.798s] Deallocating buffers... [0.025s] Loading trace points... [0.054s] Sorting trace points... [1.485s] Computing alignments... [35.366s] Deallocating buffers... [0.026s] Loading trace points... [0.172s] Sorting trace points... [1.392s] Computing alignments... [33.897s] Deallocating buffers... [0.025s] Loading trace points... [0.124s] Sorting trace points... [1.019s] Computing alignments... [33.806s] Deallocating buffers... [0.026s] Loading trace points... [0.072s] Sorting trace points... [1.337s] Computing alignments... [33.085s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.32s] Computing alignments... [33.727s] Deallocating buffers... [0.025s] Loading trace points... [0s] [576.576s] Deallocating reference... [0.078s] Loading reference sequences... [32.924s] Masking reference... [30.881s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.322s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.283s] Building query seed array... [2.177s] Computing hash join... [5.344s] Masking low complexity seeds... [0.321s] Searching alignments... [152.655s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.94s] Building query seed array... [2.442s] Computing hash join... [5.32s] Masking low complexity seeds... [0.31s] Searching alignments... [63.486s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.463s] Building query seed array... [2.573s] Computing hash join... [5.373s] Masking low complexity seeds... [0.323s] Searching alignments... [56.945s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.478s] Building query seed array... [2.093s] Computing hash join... [5.23s] Masking low complexity seeds... [0.307s] Searching alignments... [58.629s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.204s] Building query seed array... [1.923s] Computing hash join... [5.229s] Masking low complexity seeds... [0.3s] Searching alignments... [65.759s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.68s] Building query seed array... [2.294s] Computing hash join... [5.082s] Masking low complexity seeds... [0.315s] Searching alignments... [61.569s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.437s] Building query seed array... [2.421s] Computing hash join... [5.154s] Masking low complexity seeds... [0.3s] Searching alignments... [51.063s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.076s] Building query seed array... [1.974s] Computing hash join... [5.157s] Masking low complexity seeds... [0.298s] Searching alignments... [48.432s] Deallocating memory... [0s] Deallocating buffers... [0.13s] Clearing query masking... [1.422s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.178s] Sorting trace points... [1.316s] Computing alignments... [35.534s] Deallocating buffers... [0.044s] Loading trace points... [0.05s] Sorting trace points... [1.173s] Computing alignments... [35.037s] Deallocating buffers... [0.032s] Loading trace points... [0.104s] Sorting trace points... [1.276s] Computing alignments... [34.628s] Deallocating buffers... [0.033s] Loading trace points... [0.068s] Sorting trace points... [1.463s] Computing alignments... [35.565s] Deallocating buffers... [0.038s] Loading trace points... [0.051s] Sorting trace points... [1.344s] Computing alignments... [34.149s] Deallocating buffers... [0.036s] Loading trace points... [0.073s] Sorting trace points... [1.045s] Computing alignments... [34.35s] Deallocating buffers... [0.033s] Loading trace points... [0.064s] Sorting trace points... [1.297s] Computing alignments... [35.618s] Deallocating buffers... [0.043s] Loading trace points... [0.076s] Sorting trace points... [1.373s] Computing alignments... [36.17s] Deallocating buffers... [0.033s] Loading trace points... [0.065s] Sorting trace points... [1.061s] Computing alignments... [34.404s] Deallocating buffers... [0.034s] Loading trace points... [0.031s] Sorting trace points... [1.387s] Computing alignments... [35.191s] Deallocating buffers... [0.029s] Loading trace points... [0.059s] Sorting trace points... [1.417s] Computing alignments... [35.331s] Deallocating buffers... [0.029s] Loading trace points... [0.067s] Sorting trace points... [1.181s] Computing alignments... [37.583s] Deallocating buffers... [0.033s] Loading trace points... [0.058s] Sorting trace points... [1.416s] Computing alignments... [34.712s] Deallocating buffers... [0.034s] Loading trace points... [0.082s] Sorting trace points... [1.07s] Computing alignments... [34.223s] Deallocating buffers... [0.031s] Loading trace points... [0.055s] Sorting trace points... [1.045s] Computing alignments... [33.721s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.328s] Computing alignments... [34.708s] Deallocating buffers... [0.035s] Loading trace points... [0s] [591.793s] Deallocating reference... [0.079s] Loading reference sequences... [29.626s] Masking reference... [30.855s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.617s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.203s] Building query seed array... [2.181s] Computing hash join... [5.315s] Masking low complexity seeds... [0.305s] Searching alignments... [150.161s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.44s] Building query seed array... [2.457s] Computing hash join... [5.273s] Masking low complexity seeds... [0.319s] Searching alignments... [63.589s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.34s] Building query seed array... [2.595s] Computing hash join... [5.247s] Masking low complexity seeds... [0.31s] Searching alignments... [57.56s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.993s] Building query seed array... [2.157s] Computing hash join... [5.326s] Masking low complexity seeds... [0.313s] Searching alignments... [56.593s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.879s] Building query seed array... [1.887s] Computing hash join... [5.209s] Masking low complexity seeds... [0.304s] Searching alignments... [65.928s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.255s] Building query seed array... [2.28s] Computing hash join... [5.07s] Masking low complexity seeds... [0.31s] Searching alignments... [62.417s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.346s] Building query seed array... [2.506s] Computing hash join... [5.105s] Masking low complexity seeds... [0.298s] Searching alignments... [50.532s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.437s] Building query seed array... [1.97s] Computing hash join... [5.107s] Masking low complexity seeds... [0.296s] Searching alignments... [48.565s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.415s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.25s] Sorting trace points... [1.427s] Computing alignments... [36.121s] Deallocating buffers... [0.03s] Loading trace points... [0.081s] Sorting trace points... [1.311s] Computing alignments... [35.188s] Deallocating buffers... [0.031s] Loading trace points... [0.074s] Sorting trace points... [1.08s] Computing alignments... [34.424s] Deallocating buffers... [0.029s] Loading trace points... [0.085s] Sorting trace points... [1.358s] Computing alignments... [35.411s] Deallocating buffers... [0.036s] Loading trace points... [0.001s] Sorting trace points... [1.185s] Computing alignments... [34.276s] Deallocating buffers... [0.035s] Loading trace points... [0.062s] Sorting trace points... [1.366s] Computing alignments... [33.983s] Deallocating buffers... [0.025s] Loading trace points... [0.09s] Sorting trace points... [1.125s] Computing alignments... [35.281s] Deallocating buffers... [0.034s] Loading trace points... [0.059s] Sorting trace points... [1.153s] Computing alignments... [36.267s] Deallocating buffers... [0.035s] Loading trace points... [0.13s] Sorting trace points... [1.376s] Computing alignments... [34.293s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.148s] Computing alignments... [35.322s] Deallocating buffers... [0.034s] Loading trace points... [0.05s] Sorting trace points... [1.106s] Computing alignments... [35.256s] Deallocating buffers... [0.031s] Loading trace points... [0.048s] Sorting trace points... [1.351s] Computing alignments... [35.607s] Deallocating buffers... [0.029s] Loading trace points... [0.068s] Sorting trace points... [1.379s] Computing alignments... [34.622s] Deallocating buffers... [0.026s] Loading trace points... [0.081s] Sorting trace points... [1.385s] Computing alignments... [34.413s] Deallocating buffers... [0.027s] Loading trace points... [0.085s] Sorting trace points... [1.316s] Computing alignments... [33.511s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.366s] Computing alignments... [34.493s] Deallocating buffers... [0.033s] Loading trace points... [0s] [587.61s] Deallocating reference... [0.08s] Loading reference sequences... [29.508s] Masking reference... [30.845s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.507s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.072s] Building query seed array... [2.172s] Computing hash join... [5.272s] Masking low complexity seeds... [0.314s] Searching alignments... [155.348s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.377s] Building query seed array... [2.538s] Computing hash join... [5.332s] Masking low complexity seeds... [0.317s] Searching alignments... [63.783s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.58s] Building query seed array... [2.594s] Computing hash join... [5.241s] Masking low complexity seeds... [0.303s] Searching alignments... [56.335s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.199s] Building query seed array... [2.128s] Computing hash join... [5.37s] Masking low complexity seeds... [0.319s] Searching alignments... [56.048s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.795s] Building query seed array... [1.953s] Computing hash join... [5.106s] Masking low complexity seeds... [0.301s] Searching alignments... [66.368s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.87s] Building query seed array... [2.23s] Computing hash join... [5.163s] Masking low complexity seeds... [0.305s] Searching alignments... [62.343s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.188s] Building query seed array... [2.301s] Computing hash join... [5.119s] Masking low complexity seeds... [0.297s] Searching alignments... [51.229s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.375s] Building query seed array... [1.994s] Computing hash join... [5.116s] Masking low complexity seeds... [0.307s] Searching alignments... [49.074s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.433s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.343s] Sorting trace points... [1.351s] Computing alignments... [34.749s] Deallocating buffers... [0.028s] Loading trace points... [0.069s] Sorting trace points... [1.312s] Computing alignments... [34.587s] Deallocating buffers... [0.028s] Loading trace points... [0.001s] Sorting trace points... [1.1s] Computing alignments... [34.096s] Deallocating buffers... [0.025s] Loading trace points... [0.058s] Sorting trace points... [1.508s] Computing alignments... [35.48s] Deallocating buffers... [0.032s] Loading trace points... [0.045s] Sorting trace points... [1.319s] Computing alignments... [33.891s] Deallocating buffers... [0.024s] Loading trace points... [0.036s] Sorting trace points... [1.352s] Computing alignments... [33.904s] Deallocating buffers... [0.025s] Loading trace points... [0.109s] Sorting trace points... [1.346s] Computing alignments... [35.022s] Deallocating buffers... [0.026s] Loading trace points... [0.064s] Sorting trace points... [1.142s] Computing alignments... [35.483s] Deallocating buffers... [0.027s] Loading trace points... [0.085s] Sorting trace points... [1.351s] Computing alignments... [34.253s] Deallocating buffers... [0.029s] Loading trace points... [0.057s] Sorting trace points... [1.46s] Computing alignments... [34.952s] Deallocating buffers... [0.028s] Loading trace points... [0.075s] Sorting trace points... [1.367s] Computing alignments... [35.049s] Deallocating buffers... [0.025s] Loading trace points... [0.07s] Sorting trace points... [1.094s] Computing alignments... [35.547s] Deallocating buffers... [0.029s] Loading trace points... [0.08s] Sorting trace points... [1.248s] Computing alignments... [34.429s] Deallocating buffers... [0.025s] Loading trace points... [0.06s] Sorting trace points... [1.334s] Computing alignments... [33.995s] Deallocating buffers... [0.018s] Loading trace points... [0.093s] Sorting trace points... [1.332s] Computing alignments... [33.329s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.368s] Computing alignments... [34.2s] Deallocating buffers... [0.027s] Loading trace points... [0s] [582.702s] Deallocating reference... [0.079s] Loading reference sequences... [29.584s] Masking reference... [30.868s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.101s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.337s] Building query seed array... [2.134s] Computing hash join... [5.276s] Masking low complexity seeds... [0.313s] Searching alignments... [151.809s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.456s] Building query seed array... [2.508s] Computing hash join... [5.306s] Masking low complexity seeds... [0.316s] Searching alignments... [63.949s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.262s] Building query seed array... [2.592s] Computing hash join... [5.371s] Masking low complexity seeds... [0.312s] Searching alignments... [57.055s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.923s] Building query seed array... [2.146s] Computing hash join... [5.338s] Masking low complexity seeds... [0.315s] Searching alignments... [56.958s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.956s] Building query seed array... [1.907s] Computing hash join... [5.097s] Masking low complexity seeds... [0.301s] Searching alignments... [67.573s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.405s] Building query seed array... [2.22s] Computing hash join... [5.234s] Masking low complexity seeds... [0.302s] Searching alignments... [63.272s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.445s] Building query seed array... [2.386s] Computing hash join... [5.12s] Masking low complexity seeds... [0.299s] Searching alignments... [50.68s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.016s] Building query seed array... [1.952s] Computing hash join... [5.171s] Masking low complexity seeds... [0.301s] Searching alignments... [48.816s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.46s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.385s] Sorting trace points... [1.384s] Computing alignments... [36.047s] Deallocating buffers... [0.032s] Loading trace points... [0.058s] Sorting trace points... [1.041s] Computing alignments... [35.795s] Deallocating buffers... [0.037s] Loading trace points... [0.476s] Sorting trace points... [1.043s] Computing alignments... [35.037s] Deallocating buffers... [0.026s] Loading trace points... [0.084s] Sorting trace points... [1.457s] Computing alignments... [35.974s] Deallocating buffers... [0.03s] Loading trace points... [0.05s] Sorting trace points... [1.156s] Computing alignments... [34.881s] Deallocating buffers... [0.037s] Loading trace points... [0.074s] Sorting trace points... [1.372s] Computing alignments... [34.928s] Deallocating buffers... [0.033s] Loading trace points... [0.056s] Sorting trace points... [1.421s] Computing alignments... [35.925s] Deallocating buffers... [0.033s] Loading trace points... [0.051s] Sorting trace points... [1.155s] Computing alignments... [36.75s] Deallocating buffers... [0.035s] Loading trace points... [0.071s] Sorting trace points... [1.368s] Computing alignments... [34.93s] Deallocating buffers... [0.033s] Loading trace points... [0.075s] Sorting trace points... [1.089s] Computing alignments... [35.903s] Deallocating buffers... [0.033s] Loading trace points... [0.063s] Sorting trace points... [1.362s] Computing alignments... [36.14s] Deallocating buffers... [0.036s] Loading trace points... [0.058s] Sorting trace points... [1.488s] Computing alignments... [36.579s] Deallocating buffers... [0.037s] Loading trace points... [0.07s] Sorting trace points... [1.113s] Computing alignments... [35.279s] Deallocating buffers... [0.025s] Loading trace points... [0.093s] Sorting trace points... [1.099s] Computing alignments... [34.793s] Deallocating buffers... [0.032s] Loading trace points... [0.077s] Sorting trace points... [1.375s] Computing alignments... [34.185s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.155s] Computing alignments... [35.053s] Deallocating buffers... [0.034s] Loading trace points... [0s] [597.594s] Deallocating reference... [0.079s] Loading reference sequences... [35.292s] Masking reference... [31.045s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.899s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.519s] Building query seed array... [2.061s] Computing hash join... [5.387s] Masking low complexity seeds... [0.312s] Searching alignments... [150.874s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.155s] Building query seed array... [2.421s] Computing hash join... [5.222s] Masking low complexity seeds... [0.312s] Searching alignments... [65.721s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.632s] Building query seed array... [2.605s] Computing hash join... [5.296s] Masking low complexity seeds... [0.313s] Searching alignments... [56.438s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.087s] Building query seed array... [2.043s] Computing hash join... [5.344s] Masking low complexity seeds... [0.314s] Searching alignments... [56.691s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.824s] Building query seed array... [1.934s] Computing hash join... [5.245s] Masking low complexity seeds... [0.305s] Searching alignments... [63.201s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.262s] Building query seed array... [2.265s] Computing hash join... [5.156s] Masking low complexity seeds... [0.307s] Searching alignments... [62.598s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.22s] Building query seed array... [2.332s] Computing hash join... [5.086s] Masking low complexity seeds... [0.297s] Searching alignments... [51.161s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.116s] Building query seed array... [2.001s] Computing hash join... [5.091s] Masking low complexity seeds... [0.298s] Searching alignments... [46.679s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.463s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.422s] Sorting trace points... [1.368s] Computing alignments... [35.369s] Deallocating buffers... [0.026s] Loading trace points... [0.047s] Sorting trace points... [1.333s] Computing alignments... [34.961s] Deallocating buffers... [0.028s] Loading trace points... [0.08s] Sorting trace points... [1.224s] Computing alignments... [34.012s] Deallocating buffers... [0.026s] Loading trace points... [0.901s] Sorting trace points... [1.447s] Computing alignments... [35.561s] Deallocating buffers... [0.022s] Loading trace points... [0.047s] Sorting trace points... [1.322s] Computing alignments... [34.026s] Deallocating buffers... [0.017s] Loading trace points... [0.102s] Sorting trace points... [1.342s] Computing alignments... [33.925s] Deallocating buffers... [0.028s] Loading trace points... [0.069s] Sorting trace points... [1.262s] Computing alignments... [35.367s] Deallocating buffers... [0.026s] Loading trace points... [0.04s] Sorting trace points... [1.176s] Computing alignments... [35.785s] Deallocating buffers... [0.027s] Loading trace points... [0.355s] Sorting trace points... [1.373s] Computing alignments... [34.157s] Deallocating buffers... [0.028s] Loading trace points... [0.048s] Sorting trace points... [1.362s] Computing alignments... [35.034s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [1.072s] Computing alignments... [34.959s] Deallocating buffers... [0.026s] Loading trace points... [0.075s] Sorting trace points... [1.439s] Computing alignments... [36.186s] Deallocating buffers... [0.03s] Loading trace points... [0.06s] Sorting trace points... [1.207s] Computing alignments... [34.598s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.294s] Computing alignments... [34.053s] Deallocating buffers... [0.026s] Loading trace points... [0.078s] Sorting trace points... [1.333s] Computing alignments... [33.744s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.362s] Computing alignments... [34.297s] Deallocating buffers... [0.029s] Loading trace points... [0s] [586.9s] Deallocating reference... [0.072s] Loading reference sequences... [29.571s] Masking reference... [30.857s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.34s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.971s] Building query seed array... [2.142s] Computing hash join... [5.395s] Masking low complexity seeds... [0.313s] Searching alignments... [149.141s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.451s] Building query seed array... [2.445s] Computing hash join... [5.266s] Masking low complexity seeds... [0.313s] Searching alignments... [63.991s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.36s] Building query seed array... [2.641s] Computing hash join... [5.259s] Masking low complexity seeds... [0.324s] Searching alignments... [58.831s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.236s] Building query seed array... [2.091s] Computing hash join... [5.313s] Masking low complexity seeds... [0.313s] Searching alignments... [56.55s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.082s] Building query seed array... [1.93s] Computing hash join... [5.127s] Masking low complexity seeds... [0.298s] Searching alignments... [63.098s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.504s] Building query seed array... [2.22s] Computing hash join... [5.084s] Masking low complexity seeds... [0.305s] Searching alignments... [63.693s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.767s] Building query seed array... [2.391s] Computing hash join... [5.077s] Masking low complexity seeds... [0.303s] Searching alignments... [50.722s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.326s] Building query seed array... [1.968s] Computing hash join... [5.204s] Masking low complexity seeds... [0.302s] Searching alignments... [47.12s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.48s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.298s] Sorting trace points... [1.389s] Computing alignments... [35.444s] Deallocating buffers... [0.029s] Loading trace points... [0.038s] Sorting trace points... [1.371s] Computing alignments... [34.994s] Deallocating buffers... [0.028s] Loading trace points... [0.095s] Sorting trace points... [1.357s] Computing alignments... [34.209s] Deallocating buffers... [0.024s] Loading trace points... [0.068s] Sorting trace points... [1.394s] Computing alignments... [35.542s] Deallocating buffers... [0.026s] Loading trace points... [0.058s] Sorting trace points... [1.351s] Computing alignments... [34.204s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.118s] Computing alignments... [34.051s] Deallocating buffers... [0.026s] Loading trace points... [0.071s] Sorting trace points... [1.375s] Computing alignments... [35.306s] Deallocating buffers... [0.028s] Loading trace points... [0.049s] Sorting trace points... [1.159s] Computing alignments... [35.968s] Deallocating buffers... [0.028s] Loading trace points... [0.063s] Sorting trace points... [1.383s] Computing alignments... [34.281s] Deallocating buffers... [0.026s] Loading trace points... [0.051s] Sorting trace points... [1.413s] Computing alignments... [35.149s] Deallocating buffers... [0.026s] Loading trace points... [0.062s] Sorting trace points... [1.053s] Computing alignments... [34.967s] Deallocating buffers... [0.026s] Loading trace points... [0.197s] Sorting trace points... [1.465s] Computing alignments... [36.171s] Deallocating buffers... [0.024s] Loading trace points... [0.075s] Sorting trace points... [1.171s] Computing alignments... [34.701s] Deallocating buffers... [0.026s] Loading trace points... [0.08s] Sorting trace points... [1.14s] Computing alignments... [33.952s] Deallocating buffers... [0.023s] Loading trace points... [0.063s] Sorting trace points... [1.207s] Computing alignments... [33.694s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.386s] Computing alignments... [34.307s] Deallocating buffers... [0.029s] Loading trace points... [0s] [586.478s] Deallocating reference... [0.074s] Loading reference sequences... [29.542s] Masking reference... [30.853s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.785s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.322s] Building query seed array... [2.18s] Computing hash join... [5.301s] Masking low complexity seeds... [0.309s] Searching alignments... [149.243s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.542s] Building query seed array... [2.527s] Computing hash join... [5.269s] Masking low complexity seeds... [0.316s] Searching alignments... [63.406s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.853s] Building query seed array... [2.574s] Computing hash join... [5.278s] Masking low complexity seeds... [0.314s] Searching alignments... [56.086s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.874s] Building query seed array... [2.137s] Computing hash join... [5.161s] Masking low complexity seeds... [0.313s] Searching alignments... [57.133s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.156s] Building query seed array... [2.047s] Computing hash join... [5.114s] Masking low complexity seeds... [0.31s] Searching alignments... [64.044s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.044s] Building query seed array... [2.314s] Computing hash join... [5.114s] Masking low complexity seeds... [0.306s] Searching alignments... [61.394s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.534s] Building query seed array... [2.385s] Computing hash join... [5.057s] Masking low complexity seeds... [0.299s] Searching alignments... [50.514s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.221s] Building query seed array... [2.009s] Computing hash join... [5.156s] Masking low complexity seeds... [0.297s] Searching alignments... [47.601s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.463s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.414s] Sorting trace points... [1.447s] Computing alignments... [34.875s] Deallocating buffers... [0.028s] Loading trace points... [0.494s] Sorting trace points... [1.291s] Computing alignments... [34.203s] Deallocating buffers... [0.025s] Loading trace points... [0.062s] Sorting trace points... [1.327s] Computing alignments... [33.511s] Deallocating buffers... [0.028s] Loading trace points... [0.074s] Sorting trace points... [1.191s] Computing alignments... [34.906s] Deallocating buffers... [0.029s] Loading trace points... [0.059s] Sorting trace points... [1.353s] Computing alignments... [33.377s] Deallocating buffers... [0.024s] Loading trace points... [0.1s] Sorting trace points... [1.037s] Computing alignments... [33.673s] Deallocating buffers... [0.027s] Loading trace points... [0.07s] Sorting trace points... [1.398s] Computing alignments... [34.293s] Deallocating buffers... [0.028s] Loading trace points... [0.046s] Sorting trace points... [1.434s] Computing alignments... [35.272s] Deallocating buffers... [0.026s] Loading trace points... [0.051s] Sorting trace points... [1.311s] Computing alignments... [33.966s] Deallocating buffers... [0.026s] Loading trace points... [0.054s] Sorting trace points... [1.295s] Computing alignments... [34.694s] Deallocating buffers... [0.029s] Loading trace points... [0.069s] Sorting trace points... [1.132s] Computing alignments... [34.532s] Deallocating buffers... [0.026s] Loading trace points... [0.046s] Sorting trace points... [2.09s] Computing alignments... [35.233s] Deallocating buffers... [0.03s] Loading trace points... [0.064s] Sorting trace points... [1.109s] Computing alignments... [33.765s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.145s] Computing alignments... [33.601s] Deallocating buffers... [0.02s] Loading trace points... [0.106s] Sorting trace points... [1.345s] Computing alignments... [33.217s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.059s] Computing alignments... [33.853s] Deallocating buffers... [0.027s] Loading trace points... [0s] [577.241s] Deallocating reference... [0.079s] Loading reference sequences... [29.831s] Masking reference... [30.862s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.999s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.012s] Building query seed array... [2.144s] Computing hash join... [5.374s] Masking low complexity seeds... [0.316s] Searching alignments... [154.783s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.387s] Building query seed array... [2.455s] Computing hash join... [5.328s] Masking low complexity seeds... [0.315s] Searching alignments... [66.615s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.58s] Building query seed array... [2.597s] Computing hash join... [5.361s] Masking low complexity seeds... [0.319s] Searching alignments... [57.676s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.087s] Building query seed array... [2.036s] Computing hash join... [5.344s] Masking low complexity seeds... [0.312s] Searching alignments... [57.379s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.259s] Building query seed array... [1.981s] Computing hash join... [5.039s] Masking low complexity seeds... [0.297s] Searching alignments... [64.387s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.456s] Building query seed array... [2.225s] Computing hash join... [5.157s] Masking low complexity seeds... [0.291s] Searching alignments... [60.6s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.249s] Building query seed array... [2.403s] Computing hash join... [5.058s] Masking low complexity seeds... [0.292s] Searching alignments... [50.28s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.359s] Building query seed array... [1.982s] Computing hash join... [5.2s] Masking low complexity seeds... [0.312s] Searching alignments... [50.186s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.354s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.389s] Sorting trace points... [1.41s] Computing alignments... [35.457s] Deallocating buffers... [0.025s] Loading trace points... [0.062s] Sorting trace points... [1.408s] Computing alignments... [34.823s] Deallocating buffers... [0.03s] Loading trace points... [0.09s] Sorting trace points... [1.305s] Computing alignments... [34.149s] Deallocating buffers... [0.026s] Loading trace points... [0.072s] Sorting trace points... [1.35s] Computing alignments... [35.055s] Deallocating buffers... [0.031s] Loading trace points... [0.048s] Sorting trace points... [1.086s] Computing alignments... [34.003s] Deallocating buffers... [0.033s] Loading trace points... [0.095s] Sorting trace points... [1.327s] Computing alignments... [34.245s] Deallocating buffers... [0.019s] Loading trace points... [0.067s] Sorting trace points... [1.39s] Computing alignments... [35.219s] Deallocating buffers... [0.032s] Loading trace points... [0.042s] Sorting trace points... [1.477s] Computing alignments... [35.613s] Deallocating buffers... [0.029s] Loading trace points... [0.069s] Sorting trace points... [1.046s] Computing alignments... [34.068s] Deallocating buffers... [0.025s] Loading trace points... [0.655s] Sorting trace points... [1.445s] Computing alignments... [34.787s] Deallocating buffers... [0.036s] Loading trace points... [0.078s] Sorting trace points... [1.163s] Computing alignments... [35.161s] Deallocating buffers... [0.035s] Loading trace points... [0.077s] Sorting trace points... [1.417s] Computing alignments... [35.287s] Deallocating buffers... [0.029s] Loading trace points... [0.062s] Sorting trace points... [1.056s] Computing alignments... [34.294s] Deallocating buffers... [0.029s] Loading trace points... [0.077s] Sorting trace points... [1.072s] Computing alignments... [34.086s] Deallocating buffers... [0.028s] Loading trace points... [0.197s] Sorting trace points... [1.337s] Computing alignments... [33.148s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.009s] Computing alignments... [34.223s] Deallocating buffers... [0.036s] Loading trace points... [0s] [583.514s] Deallocating reference... [0.079s] Loading reference sequences... [29.618s] Masking reference... [32.192s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.335s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.132s] Building query seed array... [2.124s] Computing hash join... [5.291s] Masking low complexity seeds... [0.314s] Searching alignments... [150.918s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.257s] Building query seed array... [2.477s] Computing hash join... [5.222s] Masking low complexity seeds... [0.315s] Searching alignments... [63.549s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.718s] Building query seed array... [2.565s] Computing hash join... [5.248s] Masking low complexity seeds... [0.305s] Searching alignments... [55.633s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.104s] Building query seed array... [2.06s] Computing hash join... [5.246s] Masking low complexity seeds... [0.309s] Searching alignments... [57.996s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.799s] Building query seed array... [1.937s] Computing hash join... [5.029s] Masking low complexity seeds... [0.29s] Searching alignments... [64.21s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.303s] Building query seed array... [2.256s] Computing hash join... [5.103s] Masking low complexity seeds... [0.308s] Searching alignments... [61.017s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.604s] Building query seed array... [2.345s] Computing hash join... [5.183s] Masking low complexity seeds... [0.298s] Searching alignments... [50.93s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.166s] Building query seed array... [1.96s] Computing hash join... [5.186s] Masking low complexity seeds... [0.306s] Searching alignments... [47.977s] Deallocating memory... [0s] Deallocating buffers... [0.132s] Clearing query masking... [1.465s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.324s] Sorting trace points... [1.406s] Computing alignments... [33.097s] Deallocating buffers... [0.027s] Loading trace points... [0.127s] Sorting trace points... [1.194s] Computing alignments... [32.772s] Deallocating buffers... [0.027s] Loading trace points... [0.078s] Sorting trace points... [1.273s] Computing alignments... [32.354s] Deallocating buffers... [0.028s] Loading trace points... [0.066s] Sorting trace points... [1.499s] Computing alignments... [33.606s] Deallocating buffers... [0.025s] Loading trace points... [0.077s] Sorting trace points... [1.051s] Computing alignments... [31.934s] Deallocating buffers... [0.018s] Loading trace points... [0.08s] Sorting trace points... [1.347s] Computing alignments... [32.316s] Deallocating buffers... [0.024s] Loading trace points... [0.064s] Sorting trace points... [1.357s] Computing alignments... [32.715s] Deallocating buffers... [0.024s] Loading trace points... [0.058s] Sorting trace points... [1.416s] Computing alignments... [33.99s] Deallocating buffers... [0.029s] Loading trace points... [0.059s] Sorting trace points... [1.398s] Computing alignments... [32.763s] Deallocating buffers... [0.025s] Loading trace points... [0.095s] Sorting trace points... [1.313s] Computing alignments... [33.102s] Deallocating buffers... [0.028s] Loading trace points... [0.073s] Sorting trace points... [1.367s] Computing alignments... [33.208s] Deallocating buffers... [0.022s] Loading trace points... [0.064s] Sorting trace points... [1.43s] Computing alignments... [34.201s] Deallocating buffers... [0.021s] Loading trace points... [0.075s] Sorting trace points... [1.044s] Computing alignments... [32.69s] Deallocating buffers... [0.026s] Loading trace points... [0.063s] Sorting trace points... [1.343s] Computing alignments... [32.565s] Deallocating buffers... [0.028s] Loading trace points... [0.069s] Sorting trace points... [1.346s] Computing alignments... [32.005s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.285s] Computing alignments... [32.469s] Deallocating buffers... [0.028s] Loading trace points... [0s] [555.684s] Deallocating reference... [0.076s] Loading reference sequences... [33.473s] Masking reference... [31.542s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [31.89s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.738s] Building query seed array... [2.138s] Computing hash join... [5.323s] Masking low complexity seeds... [0.307s] Searching alignments... [155.089s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.25s] Building query seed array... [2.539s] Computing hash join... [5.318s] Masking low complexity seeds... [0.312s] Searching alignments... [63.529s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.468s] Building query seed array... [2.611s] Computing hash join... [5.302s] Masking low complexity seeds... [0.313s] Searching alignments... [56.648s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.938s] Building query seed array... [2.09s] Computing hash join... [5.215s] Masking low complexity seeds... [0.326s] Searching alignments... [56.321s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.104s] Building query seed array... [1.947s] Computing hash join... [5.081s] Masking low complexity seeds... [0.3s] Searching alignments... [66.038s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.383s] Building query seed array... [2.237s] Computing hash join... [5.173s] Masking low complexity seeds... [0.302s] Searching alignments... [61.781s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.403s] Building query seed array... [2.301s] Computing hash join... [5.124s] Masking low complexity seeds... [0.304s] Searching alignments... [49.856s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.821s] Building query seed array... [2.002s] Computing hash join... [5.156s] Masking low complexity seeds... [0.298s] Searching alignments... [48.395s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.431s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.421s] Sorting trace points... [1.373s] Computing alignments... [36.162s] Deallocating buffers... [0.042s] Loading trace points... [0.069s] Sorting trace points... [1.381s] Computing alignments... [35.97s] Deallocating buffers... [0.031s] Loading trace points... [0.057s] Sorting trace points... [1.334s] Computing alignments... [35.161s] Deallocating buffers... [0.03s] Loading trace points... [0.068s] Sorting trace points... [1.128s] Computing alignments... [36.52s] Deallocating buffers... [0.031s] Loading trace points... [0.046s] Sorting trace points... [1.393s] Computing alignments... [35.297s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.035s] Computing alignments... [35.169s] Deallocating buffers... [0.026s] Loading trace points... [0.061s] Sorting trace points... [1.439s] Computing alignments... [36.01s] Deallocating buffers... [0.03s] Loading trace points... [0.048s] Sorting trace points... [1.499s] Computing alignments... [37.202s] Deallocating buffers... [0.023s] Loading trace points... [0.053s] Sorting trace points... [1.359s] Computing alignments... [35.224s] Deallocating buffers... [0.034s] Loading trace points... [0.065s] Sorting trace points... [1.137s] Computing alignments... [36.236s] Deallocating buffers... [0.033s] Loading trace points... [0.086s] Sorting trace points... [1.238s] Computing alignments... [36.303s] Deallocating buffers... [0.027s] Loading trace points... [0.054s] Sorting trace points... [1.434s] Computing alignments... [36.735s] Deallocating buffers... [0.03s] Loading trace points... [0.079s] Sorting trace points... [1.221s] Computing alignments... [35.876s] Deallocating buffers... [0.034s] Loading trace points... [0.073s] Sorting trace points... [1.128s] Computing alignments... [35.504s] Deallocating buffers... [0.031s] Loading trace points... [0.061s] Sorting trace points... [1.356s] Computing alignments... [34.452s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.06s] Computing alignments... [35.593s] Deallocating buffers... [0.034s] Loading trace points... [0s] [602.793s] Deallocating reference... [0.083s] Loading reference sequences... [29.626s] Masking reference... [30.855s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.596s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.221s] Building query seed array... [2.144s] Computing hash join... [5.292s] Masking low complexity seeds... [0.305s] Searching alignments... [150.116s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.147s] Building query seed array... [2.445s] Computing hash join... [5.403s] Masking low complexity seeds... [0.309s] Searching alignments... [63.936s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.197s] Building query seed array... [2.575s] Computing hash join... [5.323s] Masking low complexity seeds... [0.319s] Searching alignments... [56.631s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.793s] Building query seed array... [2.108s] Computing hash join... [5.335s] Masking low complexity seeds... [0.318s] Searching alignments... [58.022s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.245s] Building query seed array... [2.014s] Computing hash join... [5.142s] Masking low complexity seeds... [0.306s] Searching alignments... [69.434s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.918s] Building query seed array... [2.334s] Computing hash join... [4.985s] Masking low complexity seeds... [0.303s] Searching alignments... [64.394s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.175s] Building query seed array... [2.323s] Computing hash join... [5.127s] Masking low complexity seeds... [0.301s] Searching alignments... [51.424s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.909s] Building query seed array... [1.999s] Computing hash join... [5.126s] Masking low complexity seeds... [0.3s] Searching alignments... [48.903s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.444s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.456s] Sorting trace points... [1.44s] Computing alignments... [36.172s] Deallocating buffers... [0.027s] Loading trace points... [0.061s] Sorting trace points... [1.332s] Computing alignments... [36.012s] Deallocating buffers... [0.032s] Loading trace points... [0.064s] Sorting trace points... [1.331s] Computing alignments... [35.001s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.479s] Computing alignments... [36.378s] Deallocating buffers... [0.03s] Loading trace points... [0.052s] Sorting trace points... [1.385s] Computing alignments... [34.906s] Deallocating buffers... [0.029s] Loading trace points... [0.115s] Sorting trace points... [1.219s] Computing alignments... [34.89s] Deallocating buffers... [0.033s] Loading trace points... [0.08s] Sorting trace points... [1.377s] Computing alignments... [36.187s] Deallocating buffers... [0.033s] Loading trace points... [0.073s] Sorting trace points... [1.451s] Computing alignments... [37.108s] Deallocating buffers... [0.027s] Loading trace points... [0.076s] Sorting trace points... [1.293s] Computing alignments... [34.942s] Deallocating buffers... [0.031s] Loading trace points... [0.057s] Sorting trace points... [1.396s] Computing alignments... [35.761s] Deallocating buffers... [0.029s] Loading trace points... [0.115s] Sorting trace points... [1.395s] Computing alignments... [36.265s] Deallocating buffers... [0.031s] Loading trace points... [0.059s] Sorting trace points... [1.353s] Computing alignments... [36.765s] Deallocating buffers... [0.029s] Loading trace points... [0.078s] Sorting trace points... [1.423s] Computing alignments... [35.318s] Deallocating buffers... [0.033s] Loading trace points... [0.057s] Sorting trace points... [1.372s] Computing alignments... [35.138s] Deallocating buffers... [0.022s] Loading trace points... [0.001s] Sorting trace points... [1.222s] Computing alignments... [33.77s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.368s] Computing alignments... [35.2s] Deallocating buffers... [0.035s] Loading trace points... [0s] [600.631s] Deallocating reference... [0.084s] Loading reference sequences... [31.608s] Masking reference... [31.953s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.03s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.337s] Building query seed array... [2.148s] Computing hash join... [5.338s] Masking low complexity seeds... [0.311s] Searching alignments... [155.956s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.185s] Building query seed array... [2.517s] Computing hash join... [5.32s] Masking low complexity seeds... [0.315s] Searching alignments... [63.813s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.631s] Building query seed array... [2.646s] Computing hash join... [5.374s] Masking low complexity seeds... [0.309s] Searching alignments... [56.887s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.951s] Building query seed array... [2.101s] Computing hash join... [5.342s] Masking low complexity seeds... [0.316s] Searching alignments... [57.386s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.32s] Building query seed array... [1.947s] Computing hash join... [5.12s] Masking low complexity seeds... [0.302s] Searching alignments... [64.755s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.556s] Building query seed array... [2.339s] Computing hash join... [5.019s] Masking low complexity seeds... [0.292s] Searching alignments... [61.911s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.472s] Building query seed array... [2.405s] Computing hash join... [5.203s] Masking low complexity seeds... [0.307s] Searching alignments... [50.611s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.982s] Building query seed array... [1.98s] Computing hash join... [5.109s] Masking low complexity seeds... [0.296s] Searching alignments... [48.113s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.468s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.353s] Sorting trace points... [1.412s] Computing alignments... [34.443s] Deallocating buffers... [0.024s] Loading trace points... [0.05s] Sorting trace points... [1.365s] Computing alignments... [34.35s] Deallocating buffers... [0.024s] Loading trace points... [0.087s] Sorting trace points... [1.109s] Computing alignments... [33.456s] Deallocating buffers... [0.027s] Loading trace points... [0.054s] Sorting trace points... [1.361s] Computing alignments... [35.288s] Deallocating buffers... [0.026s] Loading trace points... [0.057s] Sorting trace points... [1.339s] Computing alignments... [33.323s] Deallocating buffers... [0.027s] Loading trace points... [0.065s] Sorting trace points... [1.303s] Computing alignments... [33.587s] Deallocating buffers... [0.025s] Loading trace points... [0.062s] Sorting trace points... [1.396s] Computing alignments... [34.409s] Deallocating buffers... [0.029s] Loading trace points... [0.06s] Sorting trace points... [1.08s] Computing alignments... [35.468s] Deallocating buffers... [0.027s] Loading trace points... [0.066s] Sorting trace points... [1.376s] Computing alignments... [33.725s] Deallocating buffers... [0.028s] Loading trace points... [0.043s] Sorting trace points... [1.103s] Computing alignments... [34.682s] Deallocating buffers... [0.027s] Loading trace points... [0.062s] Sorting trace points... [1.153s] Computing alignments... [34.893s] Deallocating buffers... [0.018s] Loading trace points... [0.101s] Sorting trace points... [1.472s] Computing alignments... [35.354s] Deallocating buffers... [0.026s] Loading trace points... [0.053s] Sorting trace points... [1.302s] Computing alignments... [34.085s] Deallocating buffers... [0.021s] Loading trace points... [0.073s] Sorting trace points... [0.999s] Computing alignments... [33.849s] Deallocating buffers... [0.028s] Loading trace points... [0.098s] Sorting trace points... [1.356s] Computing alignments... [32.996s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.426s] Computing alignments... [33.982s] Deallocating buffers... [0.025s] Loading trace points... [0s] [577.185s] Deallocating reference... [0.076s] Loading reference sequences... [25.508s] Masking reference... [25.006s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.721s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.376s] Building query seed array... [2.149s] Computing hash join... [4.442s] Masking low complexity seeds... [0.291s] Searching alignments... [120.927s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.508s] Building query seed array... [2.511s] Computing hash join... [4.474s] Masking low complexity seeds... [0.296s] Searching alignments... [52.686s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.734s] Building query seed array... [2.601s] Computing hash join... [4.381s] Masking low complexity seeds... [0.298s] Searching alignments... [45.236s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.316s] Building query seed array... [2.086s] Computing hash join... [4.393s] Masking low complexity seeds... [0.295s] Searching alignments... [47.57s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.228s] Building query seed array... [1.935s] Computing hash join... [4.239s] Masking low complexity seeds... [0.289s] Searching alignments... [52.425s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.022s] Building query seed array... [2.212s] Computing hash join... [4.236s] Masking low complexity seeds... [0.28s] Searching alignments... [50.191s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.617s] Building query seed array... [2.382s] Computing hash join... [4.283s] Masking low complexity seeds... [0.287s] Searching alignments... [41.318s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.279s] Building query seed array... [1.979s] Computing hash join... [4.241s] Masking low complexity seeds... [0.296s] Searching alignments... [38.365s] Deallocating memory... [0s] Deallocating buffers... [0.112s] Clearing query masking... [1.442s] Opening temporary output file... [0.023s] Computing alignments... Loading trace points... [6.141s] Sorting trace points... [1.147s] Computing alignments... [27.473s] Deallocating buffers... [0.021s] Loading trace points... [0.063s] Sorting trace points... [1.094s] Computing alignments... [26.947s] Deallocating buffers... [0.019s] Loading trace points... [0.697s] Sorting trace points... [1.13s] Computing alignments... [26.778s] Deallocating buffers... [0.02s] Loading trace points... [0.052s] Sorting trace points... [1.155s] Computing alignments... [27.723s] Deallocating buffers... [0.024s] Loading trace points... [0.036s] Sorting trace points... [0.829s] Computing alignments... [26.641s] Deallocating buffers... [0.021s] Loading trace points... [0.103s] Sorting trace points... [1.099s] Computing alignments... [26.628s] Deallocating buffers... [0.02s] Loading trace points... [0.063s] Sorting trace points... [1.121s] Computing alignments... [27.417s] Deallocating buffers... [0.021s] Loading trace points... [0.052s] Sorting trace points... [1.147s] Computing alignments... [28.119s] Deallocating buffers... [0.02s] Loading trace points... [0.074s] Sorting trace points... [1.11s] Computing alignments... [26.909s] Deallocating buffers... [0.023s] Loading trace points... [0.001s] Sorting trace points... [0.964s] Computing alignments... [27.376s] Deallocating buffers... [0.021s] Loading trace points... [0.001s] Sorting trace points... [0.887s] Computing alignments... [27.607s] Deallocating buffers... [0.021s] Loading trace points... [0.046s] Sorting trace points... [1.226s] Computing alignments... [27.89s] Deallocating buffers... [0.019s] Loading trace points... [0.056s] Sorting trace points... [0.832s] Computing alignments... [26.973s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [0.897s] Computing alignments... [26.697s] Deallocating buffers... [0.022s] Loading trace points... [0.049s] Sorting trace points... [1.107s] Computing alignments... [25.959s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.115s] Computing alignments... [26.792s] Deallocating buffers... [0.02s] Loading trace points... [0s] [458.643s] Deallocating reference... [0.06s] Loading reference sequences... [0.079s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1437.16s] [1437.16s] Deallocating queries... [0.054s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [5.216s] [7.01s] Closing the database... [0s] Cleaning up... [0s] Total time = 20792.7s Reported 1347360333 pairwise alignments, 1347360333 HSPs. 6141769 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-13.trimmed.R2.fastq.gz complete: CH09-13.trimmed.R2.blastx.meganized.daa Now MEGANizing CH09-13.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH09-13.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (459.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2,366.2s) Total reads: 6,141,769 With hits: 6,141,769 Alignments: 1,032,761,439 Assig. Taxonomy: 2,814,627 Assig. SEED: 787,781 Assig. EGGNOG: 337,109 Assig. GTDB: 1,676,035 Assig. EC: 751,158 Assig. INTERPRO2GO: 906,047 MinSupport set to: 3070 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 13,582 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (45.5s) Min-supp. changes: 13,699 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (83.7s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 232 Class. SEED: 584 Class. EGGNOG: 2,131 Class. GTDB: 104 Class. EC: 2,941 Class. INTERPRO2GO: 9,672 Total time: 2,966s Peak memory: 28.3 of 195.3G MEGANization of CH09-13.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-28.trimmed.R1.fastq.gz... 2bce6ccce21e76be7983b4d128a49609 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-28.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-28.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.301s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.745s] Opening the output file... [0s] Loading query sequences... [72.349s] Masking queries... [20.338s] Algorithm: Double-indexed Building query histograms... [16.138s] Loading reference sequences... [29.632s] Masking reference... [32.087s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.162s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.425s] Building query seed array... [1.823s] Computing hash join... [5.06s] Masking low complexity seeds... [0.203s] Searching alignments... [144.755s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.306s] Building query seed array... [2.03s] Computing hash join... [4.9s] Masking low complexity seeds... [0.198s] Searching alignments... [63.299s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.441s] Building query seed array... [2.19s] Computing hash join... [4.905s] Masking low complexity seeds... [0.202s] Searching alignments... [47.976s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.14s] Building query seed array... [1.76s] Computing hash join... [4.922s] Masking low complexity seeds... [0.197s] Searching alignments... [48.352s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.412s] Building query seed array... [1.599s] Computing hash join... [4.774s] Masking low complexity seeds... [0.196s] Searching alignments... [59.768s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.579s] Building query seed array... [1.825s] Computing hash join... [4.745s] Masking low complexity seeds... [0.193s] Searching alignments... [54.104s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.965s] Building query seed array... [1.967s] Computing hash join... [4.777s] Masking low complexity seeds... [0.216s] Searching alignments... [44.429s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.035s] Building query seed array... [1.621s] Computing hash join... [4.7s] Masking low complexity seeds... [0.188s] Searching alignments... [41.078s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.32s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.503s] Sorting trace points... [1.562s] Computing alignments... [45.983s] Deallocating buffers... [0.021s] Loading trace points... [0.144s] Sorting trace points... [1.548s] Computing alignments... [47.558s] Deallocating buffers... [0.032s] Loading trace points... [0.048s] Sorting trace points... [1.56s] Computing alignments... [44.851s] Deallocating buffers... [0.027s] Loading trace points... [0.113s] Sorting trace points... [1.293s] Computing alignments... [47.044s] Deallocating buffers... [0.032s] Loading trace points... [0.129s] Sorting trace points... [1.617s] Computing alignments... [46.283s] Deallocating buffers... [0.033s] Loading trace points... [0.153s] Sorting trace points... [1.766s] Computing alignments... [49.213s] Deallocating buffers... [0.033s] Loading trace points... [0.162s] Sorting trace points... [1.629s] Computing alignments... [45.259s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.598s] Computing alignments... [46.337s] Deallocating buffers... [0.029s] Loading trace points... [0s] [395.753s] Deallocating reference... [0.078s] Loading reference sequences... [29.984s] Masking reference... [32.107s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.998s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.098s] Building query seed array... [1.792s] Computing hash join... [4.964s] Masking low complexity seeds... [0.203s] Searching alignments... [139s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.629s] Building query seed array... [1.972s] Computing hash join... [4.899s] Masking low complexity seeds... [0.201s] Searching alignments... [59.38s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.653s] Building query seed array... [2.205s] Computing hash join... [4.886s] Masking low complexity seeds... [0.214s] Searching alignments... [49.48s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.815s] Building query seed array... [1.778s] Computing hash join... [4.844s] Masking low complexity seeds... [0.2s] Searching alignments... [47.566s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.751s] Building query seed array... [1.593s] Computing hash join... [4.796s] Masking low complexity seeds... [0.198s] Searching alignments... [61.125s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.624s] Building query seed array... [1.878s] Computing hash join... [4.703s] Masking low complexity seeds... [0.191s] Searching alignments... [52.396s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.513s] Building query seed array... [1.988s] Computing hash join... [4.849s] Masking low complexity seeds... [0.187s] Searching alignments... [43.766s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.135s] Building query seed array... [1.658s] Computing hash join... [4.809s] Masking low complexity seeds... [0.194s] Searching alignments... [42.077s] Deallocating memory... [0s] Deallocating buffers... [0.132s] Clearing query masking... [1.314s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.704s] Sorting trace points... [1.594s] Computing alignments... [47.759s] Deallocating buffers... [0.054s] Loading trace points... [0.16s] Sorting trace points... [1.659s] Computing alignments... [48.669s] Deallocating buffers... [0.058s] Loading trace points... [0.112s] Sorting trace points... [1.522s] Computing alignments... [46.139s] Deallocating buffers... [0.046s] Loading trace points... [0.117s] Sorting trace points... [1.584s] Computing alignments... [48.562s] Deallocating buffers... [0.065s] Loading trace points... [0.167s] Sorting trace points... [1.493s] Computing alignments... [47.852s] Deallocating buffers... [0.052s] Loading trace points... [0.129s] Sorting trace points... [1.408s] Computing alignments... [50.947s] Deallocating buffers... [0.054s] Loading trace points... [0.156s] Sorting trace points... [1.267s] Computing alignments... [46.484s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [1.461s] Computing alignments... [47.449s] Deallocating buffers... [0.059s] Loading trace points... [0s] [406.976s] Deallocating reference... [0.085s] Loading reference sequences... [31.656s] Masking reference... [31.9s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.395s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.486s] Building query seed array... [1.787s] Computing hash join... [4.918s] Masking low complexity seeds... [0.199s] Searching alignments... [138.057s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.339s] Building query seed array... [2.108s] Computing hash join... [4.841s] Masking low complexity seeds... [0.198s] Searching alignments... [59.535s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.239s] Building query seed array... [2.12s] Computing hash join... [4.932s] Masking low complexity seeds... [0.205s] Searching alignments... [48.761s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.059s] Building query seed array... [1.745s] Computing hash join... [4.9s] Masking low complexity seeds... [0.198s] Searching alignments... [47.479s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.081s] Building query seed array... [1.597s] Computing hash join... [4.755s] Masking low complexity seeds... [0.192s] Searching alignments... [59.962s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.397s] Building query seed array... [1.852s] Computing hash join... [4.711s] Masking low complexity seeds... [0.198s] Searching alignments... [53.797s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.446s] Building query seed array... [1.966s] Computing hash join... [4.733s] Masking low complexity seeds... [0.192s] Searching alignments... [43.435s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.073s] Building query seed array... [1.643s] Computing hash join... [4.785s] Masking low complexity seeds... [0.193s] Searching alignments... [42.376s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.255s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.489s] Sorting trace points... [1.588s] Computing alignments... [47.845s] Deallocating buffers... [0.036s] Loading trace points... [0.159s] Sorting trace points... [1.685s] Computing alignments... [48.44s] Deallocating buffers... [0.045s] Loading trace points... [0.152s] Sorting trace points... [1.191s] Computing alignments... [46.537s] Deallocating buffers... [0.037s] Loading trace points... [0.16s] Sorting trace points... [1.72s] Computing alignments... [48.59s] Deallocating buffers... [0.044s] Loading trace points... [1.077s] Sorting trace points... [1.556s] Computing alignments... [47.916s] Deallocating buffers... [0.039s] Loading trace points... [0.138s] Sorting trace points... [1.374s] Computing alignments... [50.777s] Deallocating buffers... [0.042s] Loading trace points... [0.143s] Sorting trace points... [1.54s] Computing alignments... [46.759s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.633s] Computing alignments... [47.078s] Deallocating buffers... [0.044s] Loading trace points... [0s] [408.004s] Deallocating reference... [0.08s] Loading reference sequences... [33.068s] Masking reference... [31.32s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.018s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.295s] Building query seed array... [1.825s] Computing hash join... [4.895s] Masking low complexity seeds... [0.199s] Searching alignments... [140.766s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.22s] Building query seed array... [2.039s] Computing hash join... [4.927s] Masking low complexity seeds... [0.205s] Searching alignments... [61.706s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.341s] Building query seed array... [2.104s] Computing hash join... [4.912s] Masking low complexity seeds... [0.204s] Searching alignments... [50.336s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.926s] Building query seed array... [1.728s] Computing hash join... [4.862s] Masking low complexity seeds... [0.199s] Searching alignments... [48.733s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.254s] Building query seed array... [1.616s] Computing hash join... [4.832s] Masking low complexity seeds... [0.195s] Searching alignments... [59.486s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.107s] Building query seed array... [1.92s] Computing hash join... [4.738s] Masking low complexity seeds... [0.196s] Searching alignments... [53.956s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.346s] Building query seed array... [1.968s] Computing hash join... [4.818s] Masking low complexity seeds... [0.19s] Searching alignments... [43.23s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.175s] Building query seed array... [1.595s] Computing hash join... [4.767s] Masking low complexity seeds... [0.192s] Searching alignments... [43.409s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.34s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.427s] Sorting trace points... [1.626s] Computing alignments... [47.043s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.674s] Computing alignments... [47.856s] Deallocating buffers... [0.029s] Loading trace points... [0.137s] Sorting trace points... [1.611s] Computing alignments... [45.647s] Deallocating buffers... [0.027s] Loading trace points... [0.118s] Sorting trace points... [1.524s] Computing alignments... [48.084s] Deallocating buffers... [0.03s] Loading trace points... [0.194s] Sorting trace points... [1.632s] Computing alignments... [47.221s] Deallocating buffers... [0.032s] Loading trace points... [0.171s] Sorting trace points... [1.514s] Computing alignments... [50.326s] Deallocating buffers... [0.033s] Loading trace points... [0.156s] Sorting trace points... [1.391s] Computing alignments... [45.979s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.268s] Computing alignments... [46.955s] Deallocating buffers... [0.034s] Loading trace points... [0s] [402.051s] Deallocating reference... [0.096s] Loading reference sequences... [29.719s] Masking reference... [31.047s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.674s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.33s] Building query seed array... [1.73s] Computing hash join... [4.891s] Masking low complexity seeds... [0.2s] Searching alignments... [140.518s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.306s] Building query seed array... [2.092s] Computing hash join... [4.922s] Masking low complexity seeds... [0.207s] Searching alignments... [59.167s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.75s] Building query seed array... [2.134s] Computing hash join... [4.935s] Masking low complexity seeds... [0.209s] Searching alignments... [48.101s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.491s] Building query seed array... [1.691s] Computing hash join... [4.903s] Masking low complexity seeds... [0.204s] Searching alignments... [47.688s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.967s] Building query seed array... [1.592s] Computing hash join... [4.787s] Masking low complexity seeds... [0.19s] Searching alignments... [59.895s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.335s] Building query seed array... [1.857s] Computing hash join... [4.76s] Masking low complexity seeds... [0.192s] Searching alignments... [55.359s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.648s] Building query seed array... [1.969s] Computing hash join... [4.871s] Masking low complexity seeds... [0.207s] Searching alignments... [44.137s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.922s] Building query seed array... [1.625s] Computing hash join... [4.73s] Masking low complexity seeds... [0.192s] Searching alignments... [41.183s] Deallocating memory... [0s] Deallocating buffers... [0.126s] Clearing query masking... [1.281s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.475s] Sorting trace points... [1.602s] Computing alignments... [48.86s] Deallocating buffers... [0.046s] Loading trace points... [0.125s] Sorting trace points... [1.453s] Computing alignments... [49.498s] Deallocating buffers... [0.045s] Loading trace points... [0.126s] Sorting trace points... [1.486s] Computing alignments... [47.686s] Deallocating buffers... [0.041s] Loading trace points... [0.127s] Sorting trace points... [1.419s] Computing alignments... [50.35s] Deallocating buffers... [0.051s] Loading trace points... [0.153s] Sorting trace points... [1.397s] Computing alignments... [48.903s] Deallocating buffers... [0.044s] Loading trace points... [0.133s] Sorting trace points... [1.716s] Computing alignments... [52.108s] Deallocating buffers... [0.042s] Loading trace points... [0.167s] Sorting trace points... [1.393s] Computing alignments... [47.811s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [1.387s] Computing alignments... [48.499s] Deallocating buffers... [0.054s] Loading trace points... [0s] [416.384s] Deallocating reference... [0.079s] Loading reference sequences... [29.522s] Masking reference... [32.108s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.99s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.367s] Building query seed array... [1.778s] Computing hash join... [4.888s] Masking low complexity seeds... [0.198s] Searching alignments... [141.446s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.761s] Building query seed array... [2.049s] Computing hash join... [4.906s] Masking low complexity seeds... [0.193s] Searching alignments... [59.445s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.256s] Building query seed array... [2.188s] Computing hash join... [4.958s] Masking low complexity seeds... [0.215s] Searching alignments... [48.718s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.017s] Building query seed array... [1.738s] Computing hash join... [4.963s] Masking low complexity seeds... [0.203s] Searching alignments... [49.062s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.342s] Building query seed array... [1.623s] Computing hash join... [4.695s] Masking low complexity seeds... [0.199s] Searching alignments... [59.295s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.379s] Building query seed array... [1.808s] Computing hash join... [4.668s] Masking low complexity seeds... [0.19s] Searching alignments... [52.049s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.133s] Building query seed array... [1.942s] Computing hash join... [4.823s] Masking low complexity seeds... [0.192s] Searching alignments... [43.329s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.169s] Building query seed array... [1.648s] Computing hash join... [4.774s] Masking low complexity seeds... [0.187s] Searching alignments... [41.404s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.365s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.719s] Sorting trace points... [1.562s] Computing alignments... [47.516s] Deallocating buffers... [0.028s] Loading trace points... [1.193s] Sorting trace points... [1.545s] Computing alignments... [48.493s] Deallocating buffers... [0.021s] Loading trace points... [0.171s] Sorting trace points... [1.428s] Computing alignments... [46.18s] Deallocating buffers... [0.033s] Loading trace points... [0.15s] Sorting trace points... [1.639s] Computing alignments... [48.517s] Deallocating buffers... [0.038s] Loading trace points... [0.146s] Sorting trace points... [1.636s] Computing alignments... [47.093s] Deallocating buffers... [0.022s] Loading trace points... [0.12s] Sorting trace points... [1.636s] Computing alignments... [50.744s] Deallocating buffers... [0.04s] Loading trace points... [0.141s] Sorting trace points... [1.281s] Computing alignments... [46.666s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.52s] Computing alignments... [47.406s] Deallocating buffers... [0.029s] Loading trace points... [0s] [407.06s] Deallocating reference... [0.076s] Loading reference sequences... [29.72s] Masking reference... [30.873s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [33.443s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.189s] Building query seed array... [1.708s] Computing hash join... [4.88s] Masking low complexity seeds... [0.198s] Searching alignments... [140.854s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.561s] Building query seed array... [2.022s] Computing hash join... [4.961s] Masking low complexity seeds... [0.202s] Searching alignments... [60.194s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.11s] Building query seed array... [2.116s] Computing hash join... [4.979s] Masking low complexity seeds... [0.202s] Searching alignments... [50.192s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.266s] Building query seed array... [1.73s] Computing hash join... [4.952s] Masking low complexity seeds... [0.201s] Searching alignments... [50.275s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.502s] Building query seed array... [1.63s] Computing hash join... [4.745s] Masking low complexity seeds... [0.188s] Searching alignments... [61.627s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.217s] Building query seed array... [1.855s] Computing hash join... [4.713s] Masking low complexity seeds... [0.19s] Searching alignments... [53.153s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.668s] Building query seed array... [1.917s] Computing hash join... [4.778s] Masking low complexity seeds... [0.184s] Searching alignments... [44.197s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.089s] Building query seed array... [1.669s] Computing hash join... [4.786s] Masking low complexity seeds... [0.191s] Searching alignments... [42.58s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.283s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.826s] Sorting trace points... [1.389s] Computing alignments... [47.444s] Deallocating buffers... [0.032s] Loading trace points... [0.148s] Sorting trace points... [1.687s] Computing alignments... [48.661s] Deallocating buffers... [0.029s] Loading trace points... [0.206s] Sorting trace points... [1.577s] Computing alignments... [46.184s] Deallocating buffers... [0.037s] Loading trace points... [0.157s] Sorting trace points... [1.648s] Computing alignments... [48.647s] Deallocating buffers... [0.029s] Loading trace points... [0.244s] Sorting trace points... [1.362s] Computing alignments... [47.365s] Deallocating buffers... [0.024s] Loading trace points... [0.15s] Sorting trace points... [1.422s] Computing alignments... [50.852s] Deallocating buffers... [0.036s] Loading trace points... [0.147s] Sorting trace points... [1.576s] Computing alignments... [46.733s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.607s] Computing alignments... [47.45s] Deallocating buffers... [0.034s] Loading trace points... [0s] [406.868s] Deallocating reference... [0.08s] Loading reference sequences... [31.562s] Masking reference... [30.878s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [33.549s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.522s] Building query seed array... [1.77s] Computing hash join... [4.955s] Masking low complexity seeds... [0.206s] Searching alignments... [143.35s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.542s] Building query seed array... [2.077s] Computing hash join... [4.991s] Masking low complexity seeds... [0.207s] Searching alignments... [60.202s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.058s] Building query seed array... [2.085s] Computing hash join... [4.859s] Masking low complexity seeds... [0.201s] Searching alignments... [49.369s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.347s] Building query seed array... [1.765s] Computing hash join... [4.851s] Masking low complexity seeds... [0.198s] Searching alignments... [47.442s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.017s] Building query seed array... [1.658s] Computing hash join... [4.728s] Masking low complexity seeds... [0.191s] Searching alignments... [58.209s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.824s] Building query seed array... [1.882s] Computing hash join... [4.828s] Masking low complexity seeds... [0.189s] Searching alignments... [55.538s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.25s] Building query seed array... [1.981s] Computing hash join... [4.744s] Masking low complexity seeds... [0.196s] Searching alignments... [43.885s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.693s] Building query seed array... [1.635s] Computing hash join... [4.778s] Masking low complexity seeds... [0.191s] Searching alignments... [42.26s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.342s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.546s] Sorting trace points... [1.607s] Computing alignments... [45.96s] Deallocating buffers... [0.028s] Loading trace points... [0.15s] Sorting trace points... [1.235s] Computing alignments... [47.325s] Deallocating buffers... [0.031s] Loading trace points... [0.065s] Sorting trace points... [1.321s] Computing alignments... [45.068s] Deallocating buffers... [0.036s] Loading trace points... [0.337s] Sorting trace points... [1.514s] Computing alignments... [46.97s] Deallocating buffers... [0.035s] Loading trace points... [0.141s] Sorting trace points... [1.421s] Computing alignments... [46.376s] Deallocating buffers... [0.029s] Loading trace points... [0.077s] Sorting trace points... [1.427s] Computing alignments... [49.716s] Deallocating buffers... [0.041s] Loading trace points... [0.137s] Sorting trace points... [1.429s] Computing alignments... [45.325s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.584s] Computing alignments... [45.889s] Deallocating buffers... [0.02s] Loading trace points... [0s] [395.125s] Deallocating reference... [0.062s] Loading reference sequences... [29.679s] Masking reference... [30.872s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [33.279s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.203s] Building query seed array... [1.797s] Computing hash join... [4.917s] Masking low complexity seeds... [0.197s] Searching alignments... [143.298s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.356s] Building query seed array... [2.076s] Computing hash join... [4.918s] Masking low complexity seeds... [0.207s] Searching alignments... [63.278s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.241s] Building query seed array... [2.139s] Computing hash join... [4.99s] Masking low complexity seeds... [0.2s] Searching alignments... [49.272s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.028s] Building query seed array... [1.709s] Computing hash join... [4.801s] Masking low complexity seeds... [0.203s] Searching alignments... [49.602s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.04s] Building query seed array... [1.628s] Computing hash join... [4.75s] Masking low complexity seeds... [0.188s] Searching alignments... [59.896s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.052s] Building query seed array... [1.866s] Computing hash join... [4.644s] Masking low complexity seeds... [0.195s] Searching alignments... [52.65s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.402s] Building query seed array... [1.933s] Computing hash join... [4.741s] Masking low complexity seeds... [0.195s] Searching alignments... [43.998s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.339s] Building query seed array... [1.702s] Computing hash join... [4.661s] Masking low complexity seeds... [0.183s] Searching alignments... [41.39s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.216s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.543s] Sorting trace points... [1.586s] Computing alignments... [47.161s] Deallocating buffers... [0.042s] Loading trace points... [0.157s] Sorting trace points... [1.76s] Computing alignments... [47.815s] Deallocating buffers... [0.04s] Loading trace points... [0.072s] Sorting trace points... [1.362s] Computing alignments... [45.688s] Deallocating buffers... [0.038s] Loading trace points... [0.048s] Sorting trace points... [1.337s] Computing alignments... [48.092s] Deallocating buffers... [0.048s] Loading trace points... [0.133s] Sorting trace points... [1.644s] Computing alignments... [47.142s] Deallocating buffers... [0.036s] Loading trace points... [0.057s] Sorting trace points... [1.747s] Computing alignments... [50.326s] Deallocating buffers... [0.041s] Loading trace points... [0.137s] Sorting trace points... [1.623s] Computing alignments... [45.839s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.331s] Computing alignments... [46.582s] Deallocating buffers... [0.033s] Loading trace points... [0s] [401.644s] Deallocating reference... [0.062s] Loading reference sequences... [29.541s] Masking reference... [30.866s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.177s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.055s] Building query seed array... [1.815s] Computing hash join... [4.955s] Masking low complexity seeds... [0.202s] Searching alignments... [141.823s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.857s] Building query seed array... [2.004s] Computing hash join... [4.898s] Masking low complexity seeds... [0.199s] Searching alignments... [59.793s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.363s] Building query seed array... [2.125s] Computing hash join... [4.874s] Masking low complexity seeds... [0.202s] Searching alignments... [48.333s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.113s] Building query seed array... [1.749s] Computing hash join... [4.922s] Masking low complexity seeds... [0.196s] Searching alignments... [48.658s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.239s] Building query seed array... [1.629s] Computing hash join... [4.808s] Masking low complexity seeds... [0.201s] Searching alignments... [60.294s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.278s] Building query seed array... [1.863s] Computing hash join... [4.723s] Masking low complexity seeds... [0.192s] Searching alignments... [52.168s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.297s] Building query seed array... [1.942s] Computing hash join... [4.725s] Masking low complexity seeds... [0.185s] Searching alignments... [44.529s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.062s] Building query seed array... [1.656s] Computing hash join... [4.819s] Masking low complexity seeds... [0.193s] Searching alignments... [40.638s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.347s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.763s] Sorting trace points... [1.481s] Computing alignments... [43.46s] Deallocating buffers... [0.029s] Loading trace points... [0.127s] Sorting trace points... [1.557s] Computing alignments... [45.099s] Deallocating buffers... [0.03s] Loading trace points... [0.126s] Sorting trace points... [1.585s] Computing alignments... [42.548s] Deallocating buffers... [0.026s] Loading trace points... [0.118s] Sorting trace points... [1.387s] Computing alignments... [44.228s] Deallocating buffers... [0.03s] Loading trace points... [0.137s] Sorting trace points... [1.547s] Computing alignments... [43.749s] Deallocating buffers... [0.028s] Loading trace points... [0.114s] Sorting trace points... [1.425s] Computing alignments... [46.356s] Deallocating buffers... [0.031s] Loading trace points... [0.161s] Sorting trace points... [1.581s] Computing alignments... [43.455s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.639s] Computing alignments... [43.974s] Deallocating buffers... [0.033s] Loading trace points... [0s] [376.037s] Deallocating reference... [0.075s] Loading reference sequences... [33.907s] Masking reference... [31.152s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.695s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.45s] Building query seed array... [1.776s] Computing hash join... [4.885s] Masking low complexity seeds... [0.195s] Searching alignments... [141.615s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.309s] Building query seed array... [2.032s] Computing hash join... [4.938s] Masking low complexity seeds... [0.203s] Searching alignments... [58.46s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.295s] Building query seed array... [2.126s] Computing hash join... [4.865s] Masking low complexity seeds... [0.203s] Searching alignments... [49.911s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.323s] Building query seed array... [1.75s] Computing hash join... [4.907s] Masking low complexity seeds... [0.206s] Searching alignments... [47.911s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.067s] Building query seed array... [1.594s] Computing hash join... [4.831s] Masking low complexity seeds... [0.189s] Searching alignments... [61.604s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.003s] Building query seed array... [1.832s] Computing hash join... [4.76s] Masking low complexity seeds... [0.19s] Searching alignments... [52.163s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.603s] Building query seed array... [1.922s] Computing hash join... [4.752s] Masking low complexity seeds... [0.194s] Searching alignments... [44.049s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.91s] Building query seed array... [1.698s] Computing hash join... [4.73s] Masking low complexity seeds... [0.182s] Searching alignments... [41.345s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.296s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.516s] Sorting trace points... [1.607s] Computing alignments... [49.986s] Deallocating buffers... [0.04s] Loading trace points... [0.154s] Sorting trace points... [1.361s] Computing alignments... [50.378s] Deallocating buffers... [0.042s] Loading trace points... [1.267s] Sorting trace points... [1.409s] Computing alignments... [48.101s] Deallocating buffers... [0.044s] Loading trace points... [0.112s] Sorting trace points... [1.263s] Computing alignments... [50.521s] Deallocating buffers... [0.041s] Loading trace points... [0.154s] Sorting trace points... [1.494s] Computing alignments... [50.016s] Deallocating buffers... [0.043s] Loading trace points... [0.13s] Sorting trace points... [1.484s] Computing alignments... [53.209s] Deallocating buffers... [0.051s] Loading trace points... [0.144s] Sorting trace points... [1.325s] Computing alignments... [48.553s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [1.303s] Computing alignments... [48.703s] Deallocating buffers... [0.036s] Loading trace points... [0s] [422.707s] Deallocating reference... [0.077s] Loading reference sequences... [29.641s] Masking reference... [30.915s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.446s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.308s] Building query seed array... [1.78s] Computing hash join... [4.969s] Masking low complexity seeds... [0.204s] Searching alignments... [141.564s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.421s] Building query seed array... [2.102s] Computing hash join... [4.868s] Masking low complexity seeds... [0.201s] Searching alignments... [60.221s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.08s] Building query seed array... [2.131s] Computing hash join... [4.911s] Masking low complexity seeds... [0.209s] Searching alignments... [48.829s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.024s] Building query seed array... [1.719s] Computing hash join... [4.868s] Masking low complexity seeds... [0.202s] Searching alignments... [49.103s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.018s] Building query seed array... [1.61s] Computing hash join... [4.783s] Masking low complexity seeds... [0.185s] Searching alignments... [62.101s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.335s] Building query seed array... [1.853s] Computing hash join... [4.721s] Masking low complexity seeds... [0.189s] Searching alignments... [51.784s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.432s] Building query seed array... [1.936s] Computing hash join... [4.758s] Masking low complexity seeds... [0.198s] Searching alignments... [43.971s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.88s] Building query seed array... [1.627s] Computing hash join... [4.822s] Masking low complexity seeds... [0.19s] Searching alignments... [41.527s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.266s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.548s] Sorting trace points... [1.576s] Computing alignments... [49.267s] Deallocating buffers... [0.039s] Loading trace points... [0.121s] Sorting trace points... [1.394s] Computing alignments... [49.607s] Deallocating buffers... [0.045s] Loading trace points... [0.052s] Sorting trace points... [1.534s] Computing alignments... [47.41s] Deallocating buffers... [0.042s] Loading trace points... [0.159s] Sorting trace points... [1.265s] Computing alignments... [50.039s] Deallocating buffers... [0.047s] Loading trace points... [0.174s] Sorting trace points... [1.615s] Computing alignments... [49.028s] Deallocating buffers... [0.034s] Loading trace points... [0.152s] Sorting trace points... [1.392s] Computing alignments... [52.328s] Deallocating buffers... [0.049s] Loading trace points... [0.183s] Sorting trace points... [1.304s] Computing alignments... [47.937s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.616s] Computing alignments... [48.436s] Deallocating buffers... [0.028s] Loading trace points... [0s] [416.615s] Deallocating reference... [0.069s] Loading reference sequences... [29.509s] Masking reference... [30.856s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.164s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.463s] Building query seed array... [1.823s] Computing hash join... [5.03s] Masking low complexity seeds... [0.202s] Searching alignments... [139.888s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.856s] Building query seed array... [2.04s] Computing hash join... [4.899s] Masking low complexity seeds... [0.2s] Searching alignments... [61.018s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.192s] Building query seed array... [2.144s] Computing hash join... [4.855s] Masking low complexity seeds... [0.2s] Searching alignments... [48.608s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.03s] Building query seed array... [1.745s] Computing hash join... [4.901s] Masking low complexity seeds... [0.203s] Searching alignments... [48.287s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.922s] Building query seed array... [1.607s] Computing hash join... [4.743s] Masking low complexity seeds... [0.199s] Searching alignments... [60.757s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.136s] Building query seed array... [1.865s] Computing hash join... [4.784s] Masking low complexity seeds... [0.197s] Searching alignments... [54.399s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.729s] Building query seed array... [1.91s] Computing hash join... [4.739s] Masking low complexity seeds... [0.195s] Searching alignments... [43.643s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.885s] Building query seed array... [1.634s] Computing hash join... [4.717s] Masking low complexity seeds... [0.191s] Searching alignments... [40.714s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.327s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.468s] Sorting trace points... [1.636s] Computing alignments... [46.009s] Deallocating buffers... [0.032s] Loading trace points... [0.149s] Sorting trace points... [1.621s] Computing alignments... [47.427s] Deallocating buffers... [0.02s] Loading trace points... [0.144s] Sorting trace points... [1.486s] Computing alignments... [45.398s] Deallocating buffers... [0.031s] Loading trace points... [0.116s] Sorting trace points... [1.344s] Computing alignments... [47.384s] Deallocating buffers... [0.035s] Loading trace points... [0.16s] Sorting trace points... [1.584s] Computing alignments... [46.826s] Deallocating buffers... [0.034s] Loading trace points... [0.161s] Sorting trace points... [1.718s] Computing alignments... [49.665s] Deallocating buffers... [0.03s] Loading trace points... [0.149s] Sorting trace points... [1.61s] Computing alignments... [45.994s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.244s] Computing alignments... [46.015s] Deallocating buffers... [0.024s] Loading trace points... [0s] [397.69s] Deallocating reference... [0.062s] Loading reference sequences... [23.895s] Masking reference... [24.996s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [26.757s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.336s] Building query seed array... [1.787s] Computing hash join... [4.035s] Masking low complexity seeds... [0.189s] Searching alignments... [114.885s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.263s] Building query seed array... [2.127s] Computing hash join... [4.055s] Masking low complexity seeds... [0.193s] Searching alignments... [48.169s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.327s] Building query seed array... [2.15s] Computing hash join... [4.039s] Masking low complexity seeds... [0.193s] Searching alignments... [38.997s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [7.986s] Building query seed array... [1.729s] Computing hash join... [4.074s] Masking low complexity seeds... [0.194s] Searching alignments... [40.033s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.205s] Building query seed array... [1.652s] Computing hash join... [4.046s] Masking low complexity seeds... [0.18s] Searching alignments... [46.746s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.836s] Building query seed array... [1.82s] Computing hash join... [3.933s] Masking low complexity seeds... [0.184s] Searching alignments... [42.315s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.775s] Building query seed array... [1.972s] Computing hash join... [3.906s] Masking low complexity seeds... [0.187s] Searching alignments... [35.889s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.918s] Building query seed array... [1.649s] Computing hash join... [3.921s] Masking low complexity seeds... [0.192s] Searching alignments... [33.945s] Deallocating memory... [0s] Deallocating buffers... [0.117s] Clearing query masking... [1.31s] Opening temporary output file... [0.066s] Computing alignments... Loading trace points... [12.24s] Sorting trace points... [2.023s] Computing alignments... [54.151s] Deallocating buffers... [0.041s] Loading trace points... [0.273s] Sorting trace points... [1.732s] Computing alignments... [54.995s] Deallocating buffers... [0.04s] Loading trace points... [0.171s] Sorting trace points... [1.684s] Computing alignments... [55.635s] Deallocating buffers... [0.036s] Loading trace points... [0.169s] Sorting trace points... [1.805s] Computing alignments... [57.473s] Deallocating buffers... [0.037s] Loading trace points... [0.055s] Sorting trace points... [1.984s] Computing alignments... [53.768s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [0.553s] Computing alignments... [18.535s] Deallocating buffers... [0.013s] Loading trace points... [0s] [317.723s] Deallocating reference... [0.07s] Loading reference sequences... [0.087s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1386.7s] [1386.7s] Deallocating queries... [0.053s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.413s] [4.386s] Closing the database... [0s] Cleaning up... [0s] Total time = 17322s Reported 1409239448 pairwise alignments, 1409239448 HSPs. 4269168 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-28.trimmed.R1.fastq.gz complete: CH09-28.trimmed.R1.blastx.meganized.daa Now MEGANizing CH09-28.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH09-28.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (223.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2,501.0s) Total reads: 4,269,168 With hits: 4,269,168 Alignments: 1,095,109,993 Assig. Taxonomy: 1,840,421 Assig. SEED: 123,599 Assig. EGGNOG: 56,781 Assig. GTDB: 293,973 Assig. EC: 271,144 Assig. INTERPRO2GO: 800,931 MinSupport set to: 2134 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 7,108 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12.2s) Min-supp. changes: 6,102 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.4s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 187 Class. SEED: 532 Class. EGGNOG: 1,871 Class. GTDB: 64 Class. EC: 2,581 Class. INTERPRO2GO: 8,899 Total time: 2,756s Peak memory: 33.6 of 195.3G MEGANization of CH09-28.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-28.trimmed.R2.fastq.gz... 6e861739dc603ce3ad906ccaee8632f0 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-28.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-28.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.289s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.635s] Opening the output file... [0s] Loading query sequences... [70.267s] Masking queries... [20.272s] Algorithm: Double-indexed Building query histograms... [14.856s] Loading reference sequences... [29.426s] Masking reference... [32.145s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.143s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.343s] Building query seed array... [1.781s] Computing hash join... [5.056s] Masking low complexity seeds... [0.196s] Searching alignments... [146.325s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.159s] Building query seed array... [2.012s] Computing hash join... [4.935s] Masking low complexity seeds... [0.202s] Searching alignments... [61.348s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.823s] Building query seed array... [2.074s] Computing hash join... [4.92s] Masking low complexity seeds... [0.198s] Searching alignments... [49.853s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.776s] Building query seed array... [1.735s] Computing hash join... [4.936s] Masking low complexity seeds... [0.197s] Searching alignments... [50.702s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.898s] Building query seed array... [1.624s] Computing hash join... [4.828s] Masking low complexity seeds... [0.188s] Searching alignments... [63.256s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.228s] Building query seed array... [1.821s] Computing hash join... [4.686s] Masking low complexity seeds... [0.182s] Searching alignments... [57.095s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.483s] Building query seed array... [1.925s] Computing hash join... [4.781s] Masking low complexity seeds... [0.187s] Searching alignments... [45.4s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.17s] Building query seed array... [1.657s] Computing hash join... [4.693s] Masking low complexity seeds... [0.186s] Searching alignments... [44.973s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.261s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.726s] Sorting trace points... [1.688s] Computing alignments... [47.674s] Deallocating buffers... [0.033s] Loading trace points... [0.144s] Sorting trace points... [1.338s] Computing alignments... [48.488s] Deallocating buffers... [0.024s] Loading trace points... [0.14s] Sorting trace points... [1.297s] Computing alignments... [46.527s] Deallocating buffers... [0.036s] Loading trace points... [0.741s] Sorting trace points... [1.583s] Computing alignments... [47.1s] Deallocating buffers... [0.03s] Loading trace points... [0.129s] Sorting trace points... [1.346s] Computing alignments... [46.368s] Deallocating buffers... [0.03s] Loading trace points... [0.144s] Sorting trace points... [1.491s] Computing alignments... [48.268s] Deallocating buffers... [0.033s] Loading trace points... [0.137s] Sorting trace points... [1.175s] Computing alignments... [46.079s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.522s] Computing alignments... [45.563s] Deallocating buffers... [0.023s] Loading trace points... [0s] [399.045s] Deallocating reference... [0.062s] Loading reference sequences... [29.628s] Masking reference... [30.902s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.637s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.356s] Building query seed array... [1.797s] Computing hash join... [5.002s] Masking low complexity seeds... [0.201s] Searching alignments... [144.333s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.363s] Building query seed array... [2.093s] Computing hash join... [4.894s] Masking low complexity seeds... [0.195s] Searching alignments... [60.038s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.013s] Building query seed array... [2.18s] Computing hash join... [4.851s] Masking low complexity seeds... [0.193s] Searching alignments... [50.063s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.233s] Building query seed array... [1.715s] Computing hash join... [4.873s] Masking low complexity seeds... [0.194s] Searching alignments... [49.638s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.432s] Building query seed array... [1.597s] Computing hash join... [4.721s] Masking low complexity seeds... [0.188s] Searching alignments... [61.452s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.659s] Building query seed array... [1.819s] Computing hash join... [4.717s] Masking low complexity seeds... [0.188s] Searching alignments... [55.901s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.124s] Building query seed array... [1.857s] Computing hash join... [4.702s] Masking low complexity seeds... [0.183s] Searching alignments... [44.274s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.703s] Building query seed array... [1.624s] Computing hash join... [4.718s] Masking low complexity seeds... [0.189s] Searching alignments... [43.85s] Deallocating memory... [0s] Deallocating buffers... [0.132s] Clearing query masking... [1.294s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.229s] Sorting trace points... [1.699s] Computing alignments... [48.958s] Deallocating buffers... [0.062s] Loading trace points... [0.073s] Sorting trace points... [1.321s] Computing alignments... [50.573s] Deallocating buffers... [0.058s] Loading trace points... [0.11s] Sorting trace points... [1.612s] Computing alignments... [48.011s] Deallocating buffers... [0.053s] Loading trace points... [0.137s] Sorting trace points... [1.412s] Computing alignments... [48.421s] Deallocating buffers... [0.052s] Loading trace points... [0.155s] Sorting trace points... [1.601s] Computing alignments... [48.25s] Deallocating buffers... [0.052s] Loading trace points... [0.111s] Sorting trace points... [1.42s] Computing alignments... [49.312s] Deallocating buffers... [0.052s] Loading trace points... [0.04s] Sorting trace points... [1.619s] Computing alignments... [47.92s] Deallocating buffers... [0.052s] Loading trace points... [0s] Sorting trace points... [1.314s] Computing alignments... [46.727s] Deallocating buffers... [0.059s] Loading trace points... [0s] [411.625s] Deallocating reference... [0.089s] Loading reference sequences... [31.934s] Masking reference... [31.546s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.388s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.475s] Building query seed array... [1.777s] Computing hash join... [4.869s] Masking low complexity seeds... [0.194s] Searching alignments... [144.746s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.162s] Building query seed array... [2.028s] Computing hash join... [4.937s] Masking low complexity seeds... [0.194s] Searching alignments... [61.878s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.044s] Building query seed array... [2.048s] Computing hash join... [4.858s] Masking low complexity seeds... [0.2s] Searching alignments... [49.262s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.098s] Building query seed array... [1.803s] Computing hash join... [4.827s] Masking low complexity seeds... [0.199s] Searching alignments... [48.724s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.75s] Building query seed array... [1.646s] Computing hash join... [4.749s] Masking low complexity seeds... [0.184s] Searching alignments... [62.04s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.508s] Building query seed array... [1.855s] Computing hash join... [4.819s] Masking low complexity seeds... [0.18s] Searching alignments... [58.995s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.414s] Building query seed array... [1.905s] Computing hash join... [4.654s] Masking low complexity seeds... [0.18s] Searching alignments... [45.048s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.029s] Building query seed array... [1.627s] Computing hash join... [4.702s] Masking low complexity seeds... [0.187s] Searching alignments... [45.584s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.316s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.694s] Sorting trace points... [1.639s] Computing alignments... [48.742s] Deallocating buffers... [0.056s] Loading trace points... [0.136s] Sorting trace points... [1.36s] Computing alignments... [50.574s] Deallocating buffers... [0.055s] Loading trace points... [0.19s] Sorting trace points... [1.353s] Computing alignments... [47.97s] Deallocating buffers... [0.04s] Loading trace points... [0.077s] Sorting trace points... [1.358s] Computing alignments... [48.51s] Deallocating buffers... [0.043s] Loading trace points... [0.13s] Sorting trace points... [1.374s] Computing alignments... [48.087s] Deallocating buffers... [0.048s] Loading trace points... [0.124s] Sorting trace points... [1.634s] Computing alignments... [49.248s] Deallocating buffers... [0.053s] Loading trace points... [0.156s] Sorting trace points... [1.304s] Computing alignments... [48.36s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.583s] Computing alignments... [46.511s] Deallocating buffers... [0.041s] Loading trace points... [0s] [410.673s] Deallocating reference... [0.076s] Loading reference sequences... [29.258s] Masking reference... [30.857s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.497s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.6s] Building query seed array... [1.789s] Computing hash join... [4.851s] Masking low complexity seeds... [0.195s] Searching alignments... [145.781s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.247s] Building query seed array... [2.067s] Computing hash join... [4.861s] Masking low complexity seeds... [0.2s] Searching alignments... [61.782s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.339s] Building query seed array... [2.075s] Computing hash join... [4.912s] Masking low complexity seeds... [0.191s] Searching alignments... [51.392s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.298s] Building query seed array... [1.72s] Computing hash join... [4.867s] Masking low complexity seeds... [0.199s] Searching alignments... [49.505s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.591s] Building query seed array... [1.539s] Computing hash join... [4.7s] Masking low complexity seeds... [0.189s] Searching alignments... [65.277s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.547s] Building query seed array... [1.966s] Computing hash join... [4.82s] Masking low complexity seeds... [0.181s] Searching alignments... [55.278s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.851s] Building query seed array... [1.94s] Computing hash join... [4.755s] Masking low complexity seeds... [0.189s] Searching alignments... [45.127s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.981s] Building query seed array... [1.647s] Computing hash join... [4.719s] Masking low complexity seeds... [0.193s] Searching alignments... [43.746s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.293s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.692s] Sorting trace points... [1.685s] Computing alignments... [48.151s] Deallocating buffers... [0.03s] Loading trace points... [0.132s] Sorting trace points... [1.468s] Computing alignments... [49.885s] Deallocating buffers... [0.026s] Loading trace points... [0.13s] Sorting trace points... [1.638s] Computing alignments... [47.44s] Deallocating buffers... [0.036s] Loading trace points... [0.19s] Sorting trace points... [1.309s] Computing alignments... [47.869s] Deallocating buffers... [0.033s] Loading trace points... [0.165s] Sorting trace points... [1.566s] Computing alignments... [47.481s] Deallocating buffers... [0.034s] Loading trace points... [0.16s] Sorting trace points... [1.712s] Computing alignments... [48.638s] Deallocating buffers... [0.041s] Loading trace points... [0.111s] Sorting trace points... [1.356s] Computing alignments... [47.21s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.57s] Computing alignments... [46.242s] Deallocating buffers... [0.032s] Loading trace points... [0s] [406.155s] Deallocating reference... [0.072s] Loading reference sequences... [32.757s] Masking reference... [31.911s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.765s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.153s] Building query seed array... [1.791s] Computing hash join... [4.9s] Masking low complexity seeds... [0.197s] Searching alignments... [143.546s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.65s] Building query seed array... [2.023s] Computing hash join... [4.888s] Masking low complexity seeds... [0.197s] Searching alignments... [60.064s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.698s] Building query seed array... [2.088s] Computing hash join... [4.821s] Masking low complexity seeds... [0.194s] Searching alignments... [48.505s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.025s] Building query seed array... [1.718s] Computing hash join... [4.903s] Masking low complexity seeds... [0.201s] Searching alignments... [49.726s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.955s] Building query seed array... [1.655s] Computing hash join... [4.786s] Masking low complexity seeds... [0.193s] Searching alignments... [62.042s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.551s] Building query seed array... [1.82s] Computing hash join... [4.746s] Masking low complexity seeds... [0.181s] Searching alignments... [55.634s] Deallocating memory... [0.004s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.354s] Building query seed array... [1.958s] Computing hash join... [4.701s] Masking low complexity seeds... [0.179s] Searching alignments... [44.932s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.186s] Building query seed array... [1.637s] Computing hash join... [4.758s] Masking low complexity seeds... [0.188s] Searching alignments... [43.06s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.243s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.653s] Sorting trace points... [1.612s] Computing alignments... [49.885s] Deallocating buffers... [0.042s] Loading trace points... [0.119s] Sorting trace points... [1.653s] Computing alignments... [51.551s] Deallocating buffers... [0.052s] Loading trace points... [0.111s] Sorting trace points... [1.24s] Computing alignments... [49.281s] Deallocating buffers... [0.049s] Loading trace points... [0.175s] Sorting trace points... [1.31s] Computing alignments... [49.746s] Deallocating buffers... [0.041s] Loading trace points... [0.158s] Sorting trace points... [1.63s] Computing alignments... [49.325s] Deallocating buffers... [0.043s] Loading trace points... [0.143s] Sorting trace points... [1.417s] Computing alignments... [50.129s] Deallocating buffers... [0.045s] Loading trace points... [0.115s] Sorting trace points... [1.642s] Computing alignments... [49.459s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.386s] Computing alignments... [47.856s] Deallocating buffers... [0.046s] Loading trace points... [0s] [420.15s] Deallocating reference... [0.081s] Loading reference sequences... [29.637s] Masking reference... [30.908s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.383s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.237s] Building query seed array... [1.817s] Computing hash join... [4.958s] Masking low complexity seeds... [0.196s] Searching alignments... [145.848s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.225s] Building query seed array... [2.032s] Computing hash join... [4.872s] Masking low complexity seeds... [0.201s] Searching alignments... [61.578s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.173s] Building query seed array... [2.108s] Computing hash join... [4.906s] Masking low complexity seeds... [0.193s] Searching alignments... [50.798s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.248s] Building query seed array... [1.78s] Computing hash join... [4.912s] Masking low complexity seeds... [0.196s] Searching alignments... [50.274s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.037s] Building query seed array... [1.671s] Computing hash join... [4.709s] Masking low complexity seeds... [0.184s] Searching alignments... [61.283s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.509s] Building query seed array... [1.925s] Computing hash join... [4.748s] Masking low complexity seeds... [0.181s] Searching alignments... [53.379s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.022s] Building query seed array... [1.901s] Computing hash join... [4.67s] Masking low complexity seeds... [0.187s] Searching alignments... [45.322s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.817s] Building query seed array... [1.597s] Computing hash join... [4.779s] Masking low complexity seeds... [0.177s] Searching alignments... [44.642s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.309s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.747s] Sorting trace points... [1.656s] Computing alignments... [48.412s] Deallocating buffers... [0.034s] Loading trace points... [0.148s] Sorting trace points... [1.41s] Computing alignments... [50.42s] Deallocating buffers... [0.034s] Loading trace points... [0.135s] Sorting trace points... [1.645s] Computing alignments... [47.679s] Deallocating buffers... [0.028s] Loading trace points... [0.157s] Sorting trace points... [1.641s] Computing alignments... [48.449s] Deallocating buffers... [0.032s] Loading trace points... [0.341s] Sorting trace points... [1.356s] Computing alignments... [47.909s] Deallocating buffers... [0.032s] Loading trace points... [0.118s] Sorting trace points... [1.44s] Computing alignments... [48.87s] Deallocating buffers... [0.033s] Loading trace points... [0.079s] Sorting trace points... [1.595s] Computing alignments... [48.263s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.307s] Computing alignments... [46.526s] Deallocating buffers... [0.028s] Loading trace points... [0s] [409.715s] Deallocating reference... [0.075s] Loading reference sequences... [29.725s] Masking reference... [32.14s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.478s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.289s] Building query seed array... [1.792s] Computing hash join... [5.015s] Masking low complexity seeds... [0.203s] Searching alignments... [143.06s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.018s] Building query seed array... [2.059s] Computing hash join... [4.879s] Masking low complexity seeds... [0.197s] Searching alignments... [60.666s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.659s] Building query seed array... [2.117s] Computing hash join... [4.947s] Masking low complexity seeds... [0.199s] Searching alignments... [49.226s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.303s] Building query seed array... [1.766s] Computing hash join... [4.875s] Masking low complexity seeds... [0.19s] Searching alignments... [49.856s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.894s] Building query seed array... [1.544s] Computing hash join... [4.67s] Masking low complexity seeds... [0.193s] Searching alignments... [62.23s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.439s] Building query seed array... [1.816s] Computing hash join... [4.684s] Masking low complexity seeds... [0.189s] Searching alignments... [54.749s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.229s] Building query seed array... [1.934s] Computing hash join... [4.787s] Masking low complexity seeds... [0.187s] Searching alignments... [44.541s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.775s] Building query seed array... [1.688s] Computing hash join... [4.695s] Masking low complexity seeds... [0.182s] Searching alignments... [44.563s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.295s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.71s] Sorting trace points... [1.618s] Computing alignments... [48.996s] Deallocating buffers... [0.032s] Loading trace points... [0.057s] Sorting trace points... [1.372s] Computing alignments... [50.242s] Deallocating buffers... [0.033s] Loading trace points... [0.096s] Sorting trace points... [1.457s] Computing alignments... [47.775s] Deallocating buffers... [0.029s] Loading trace points... [0.132s] Sorting trace points... [1.63s] Computing alignments... [48.823s] Deallocating buffers... [0.029s] Loading trace points... [0.121s] Sorting trace points... [1.231s] Computing alignments... [48.17s] Deallocating buffers... [0.035s] Loading trace points... [0.118s] Sorting trace points... [1.436s] Computing alignments... [48.861s] Deallocating buffers... [0.031s] Loading trace points... [0.047s] Sorting trace points... [1.291s] Computing alignments... [48.544s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.575s] Computing alignments... [46.61s] Deallocating buffers... [0.033s] Loading trace points... [0s] [411.33s] Deallocating reference... [0.081s] Loading reference sequences... [34.901s] Masking reference... [31.333s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.381s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.229s] Building query seed array... [1.761s] Computing hash join... [4.815s] Masking low complexity seeds... [0.192s] Searching alignments... [143.76s] Deallocating memory... [0.004s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.284s] Building query seed array... [2.071s] Computing hash join... [4.974s] Masking low complexity seeds... [0.199s] Searching alignments... [62.708s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.484s] Building query seed array... [2.065s] Computing hash join... [4.926s] Masking low complexity seeds... [0.192s] Searching alignments... [50.038s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.98s] Building query seed array... [1.709s] Computing hash join... [4.88s] Masking low complexity seeds... [0.197s] Searching alignments... [50.137s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.965s] Building query seed array... [1.59s] Computing hash join... [4.683s] Masking low complexity seeds... [0.188s] Searching alignments... [62.967s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.056s] Building query seed array... [1.81s] Computing hash join... [4.804s] Masking low complexity seeds... [0.19s] Searching alignments... [54.494s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.026s] Building query seed array... [1.918s] Computing hash join... [4.753s] Masking low complexity seeds... [0.18s] Searching alignments... [46.129s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.017s] Building query seed array... [1.596s] Computing hash join... [4.792s] Masking low complexity seeds... [0.186s] Searching alignments... [42.276s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.319s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.594s] Sorting trace points... [1.697s] Computing alignments... [47.198s] Deallocating buffers... [0.029s] Loading trace points... [0.159s] Sorting trace points... [1.568s] Computing alignments... [48.831s] Deallocating buffers... [0.03s] Loading trace points... [0.074s] Sorting trace points... [1.613s] Computing alignments... [46.164s] Deallocating buffers... [0.028s] Loading trace points... [0.124s] Sorting trace points... [1.672s] Computing alignments... [46.776s] Deallocating buffers... [0.029s] Loading trace points... [0.121s] Sorting trace points... [1.611s] Computing alignments... [46.578s] Deallocating buffers... [0.029s] Loading trace points... [0.205s] Sorting trace points... [1.429s] Computing alignments... [47.792s] Deallocating buffers... [0.031s] Loading trace points... [0.177s] Sorting trace points... [1.298s] Computing alignments... [46.137s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.364s] Computing alignments... [45.177s] Deallocating buffers... [0.03s] Loading trace points... [0s] [397.786s] Deallocating reference... [0.079s] Loading reference sequences... [29.832s] Masking reference... [31.564s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.496s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.427s] Building query seed array... [1.804s] Computing hash join... [4.876s] Masking low complexity seeds... [0.192s] Searching alignments... [146.563s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.372s] Building query seed array... [2.044s] Computing hash join... [4.887s] Masking low complexity seeds... [0.196s] Searching alignments... [63.39s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.674s] Building query seed array... [2.179s] Computing hash join... [4.885s] Masking low complexity seeds... [0.195s] Searching alignments... [50.135s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.576s] Building query seed array... [1.744s] Computing hash join... [4.897s] Masking low complexity seeds... [0.2s] Searching alignments... [49.854s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.001s] Building query seed array... [1.608s] Computing hash join... [4.763s] Masking low complexity seeds... [0.189s] Searching alignments... [62.414s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.117s] Building query seed array... [1.832s] Computing hash join... [4.72s] Masking low complexity seeds... [0.18s] Searching alignments... [56.636s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.549s] Building query seed array... [1.897s] Computing hash join... [4.802s] Masking low complexity seeds... [0.189s] Searching alignments... [44.754s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.809s] Building query seed array... [1.647s] Computing hash join... [4.83s] Masking low complexity seeds... [0.184s] Searching alignments... [43.573s] Deallocating memory... [0s] Deallocating buffers... [0.129s] Clearing query masking... [1.286s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.01s] Sorting trace points... [1.357s] Computing alignments... [48.129s] Deallocating buffers... [0.04s] Loading trace points... [0.15s] Sorting trace points... [1.382s] Computing alignments... [49.62s] Deallocating buffers... [0.051s] Loading trace points... [0.073s] Sorting trace points... [1.575s] Computing alignments... [47.406s] Deallocating buffers... [0.035s] Loading trace points... [0.132s] Sorting trace points... [1.716s] Computing alignments... [48.086s] Deallocating buffers... [0.038s] Loading trace points... [0.134s] Sorting trace points... [1.353s] Computing alignments... [47.68s] Deallocating buffers... [0.035s] Loading trace points... [0.175s] Sorting trace points... [1.519s] Computing alignments... [48.572s] Deallocating buffers... [0.045s] Loading trace points... [0.207s] Sorting trace points... [1.46s] Computing alignments... [47.217s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.588s] Computing alignments... [46.044s] Deallocating buffers... [0.041s] Loading trace points... [0s] [406.102s] Deallocating reference... [0.083s] Loading reference sequences... [30.115s] Masking reference... [30.828s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.352s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.248s] Building query seed array... [1.777s] Computing hash join... [4.948s] Masking low complexity seeds... [0.199s] Searching alignments... [145.606s] Deallocating memory... [0.003s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.392s] Building query seed array... [2.026s] Computing hash join... [4.872s] Masking low complexity seeds... [0.198s] Searching alignments... [59.888s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.173s] Building query seed array... [2.161s] Computing hash join... [4.869s] Masking low complexity seeds... [0.2s] Searching alignments... [48.622s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.753s] Building query seed array... [1.721s] Computing hash join... [4.834s] Masking low complexity seeds... [0.193s] Searching alignments... [50.233s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.925s] Building query seed array... [1.577s] Computing hash join... [4.66s] Masking low complexity seeds... [0.181s] Searching alignments... [62.262s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.133s] Building query seed array... [1.888s] Computing hash join... [4.743s] Masking low complexity seeds... [0.186s] Searching alignments... [55.336s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.987s] Building query seed array... [1.94s] Computing hash join... [4.723s] Masking low complexity seeds... [0.187s] Searching alignments... [45.83s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.8s] Building query seed array... [1.617s] Computing hash join... [4.774s] Masking low complexity seeds... [0.185s] Searching alignments... [43.428s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.308s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.655s] Sorting trace points... [1.585s] Computing alignments... [45.051s] Deallocating buffers... [0.032s] Loading trace points... [0.177s] Sorting trace points... [1.548s] Computing alignments... [46.055s] Deallocating buffers... [0.022s] Loading trace points... [0.146s] Sorting trace points... [1.194s] Computing alignments... [44.245s] Deallocating buffers... [0.03s] Loading trace points... [0.161s] Sorting trace points... [1.573s] Computing alignments... [44.48s] Deallocating buffers... [0.029s] Loading trace points... [0.155s] Sorting trace points... [1.605s] Computing alignments... [44.097s] Deallocating buffers... [0.029s] Loading trace points... [0.112s] Sorting trace points... [1.706s] Computing alignments... [45.662s] Deallocating buffers... [0.034s] Loading trace points... [0.003s] Sorting trace points... [1.343s] Computing alignments... [43.95s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.244s] Computing alignments... [43.188s] Deallocating buffers... [0.039s] Loading trace points... [0s] [379.348s] Deallocating reference... [0.08s] Loading reference sequences... [29.866s] Masking reference... [31.983s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.402s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.23s] Building query seed array... [1.809s] Computing hash join... [4.937s] Masking low complexity seeds... [0.197s] Searching alignments... [144.138s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.485s] Building query seed array... [2.029s] Computing hash join... [4.838s] Masking low complexity seeds... [0.193s] Searching alignments... [62.579s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.14s] Building query seed array... [2.164s] Computing hash join... [4.884s] Masking low complexity seeds... [0.203s] Searching alignments... [48.984s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.827s] Building query seed array... [1.697s] Computing hash join... [4.991s] Masking low complexity seeds... [0.195s] Searching alignments... [49.669s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.753s] Building query seed array... [1.554s] Computing hash join... [4.778s] Masking low complexity seeds... [0.183s] Searching alignments... [64.076s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.671s] Building query seed array... [1.861s] Computing hash join... [4.665s] Masking low complexity seeds... [0.177s] Searching alignments... [55.557s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.298s] Building query seed array... [1.893s] Computing hash join... [4.638s] Masking low complexity seeds... [0.183s] Searching alignments... [44.441s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.071s] Building query seed array... [1.644s] Computing hash join... [4.728s] Masking low complexity seeds... [0.186s] Searching alignments... [43.012s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.339s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.966s] Sorting trace points... [1.682s] Computing alignments... [51.219s] Deallocating buffers... [0.052s] Loading trace points... [0.053s] Sorting trace points... [1.35s] Computing alignments... [52.555s] Deallocating buffers... [0.048s] Loading trace points... [0.116s] Sorting trace points... [1.418s] Computing alignments... [49.896s] Deallocating buffers... [0.04s] Loading trace points... [0.12s] Sorting trace points... [1.414s] Computing alignments... [50.717s] Deallocating buffers... [0.044s] Loading trace points... [0.146s] Sorting trace points... [1.64s] Computing alignments... [50.491s] Deallocating buffers... [0.039s] Loading trace points... [0.135s] Sorting trace points... [1.407s] Computing alignments... [51.056s] Deallocating buffers... [0.049s] Loading trace points... [0.106s] Sorting trace points... [1.606s] Computing alignments... [50.107s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.323s] Computing alignments... [48.432s] Deallocating buffers... [0.036s] Loading trace points... [0s] [427.465s] Deallocating reference... [0.068s] Loading reference sequences... [29.622s] Masking reference... [30.851s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.575s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.353s] Building query seed array... [1.79s] Computing hash join... [4.887s] Masking low complexity seeds... [0.193s] Searching alignments... [147.887s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.338s] Building query seed array... [2.055s] Computing hash join... [4.836s] Masking low complexity seeds... [0.186s] Searching alignments... [61.692s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.958s] Building query seed array... [2.092s] Computing hash join... [4.855s] Masking low complexity seeds... [0.198s] Searching alignments... [51.027s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.047s] Building query seed array... [1.719s] Computing hash join... [4.855s] Masking low complexity seeds... [0.201s] Searching alignments... [50.057s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.121s] Building query seed array... [1.593s] Computing hash join... [4.74s] Masking low complexity seeds... [0.185s] Searching alignments... [60.595s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.156s] Building query seed array... [1.846s] Computing hash join... [4.727s] Masking low complexity seeds... [0.188s] Searching alignments... [55.396s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.246s] Building query seed array... [1.912s] Computing hash join... [4.685s] Masking low complexity seeds... [0.18s] Searching alignments... [46.158s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.109s] Building query seed array... [1.599s] Computing hash join... [4.766s] Masking low complexity seeds... [0.193s] Searching alignments... [43.477s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.24s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.044s] Sorting trace points... [1.673s] Computing alignments... [50.157s] Deallocating buffers... [0.04s] Loading trace points... [0.148s] Sorting trace points... [1.334s] Computing alignments... [51.488s] Deallocating buffers... [0.046s] Loading trace points... [0.071s] Sorting trace points... [1.362s] Computing alignments... [49.009s] Deallocating buffers... [0.04s] Loading trace points... [0.142s] Sorting trace points... [1.69s] Computing alignments... [49.93s] Deallocating buffers... [0.043s] Loading trace points... [0.154s] Sorting trace points... [1.598s] Computing alignments... [49.403s] Deallocating buffers... [0.042s] Loading trace points... [0.155s] Sorting trace points... [1.453s] Computing alignments... [50.098s] Deallocating buffers... [0.049s] Loading trace points... [0.114s] Sorting trace points... [1.369s] Computing alignments... [49.414s] Deallocating buffers... [0.045s] Loading trace points... [0s] Sorting trace points... [1.318s] Computing alignments... [47.461s] Deallocating buffers... [0.042s] Loading trace points... [0s] [420.083s] Deallocating reference... [0.074s] Loading reference sequences... [32.298s] Masking reference... [31.751s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.972s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.864s] Building query seed array... [1.78s] Computing hash join... [4.891s] Masking low complexity seeds... [0.198s] Searching alignments... [148.592s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.388s] Building query seed array... [2.02s] Computing hash join... [4.855s] Masking low complexity seeds... [0.191s] Searching alignments... [60.502s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.15s] Building query seed array... [2.107s] Computing hash join... [4.986s] Masking low complexity seeds... [0.196s] Searching alignments... [49.326s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.212s] Building query seed array... [1.714s] Computing hash join... [4.851s] Masking low complexity seeds... [0.193s] Searching alignments... [50.682s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.973s] Building query seed array... [1.628s] Computing hash join... [4.758s] Masking low complexity seeds... [0.193s] Searching alignments... [64.473s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.282s] Building query seed array... [1.872s] Computing hash join... [4.662s] Masking low complexity seeds... [0.187s] Searching alignments... [54.499s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.452s] Building query seed array... [1.943s] Computing hash join... [4.825s] Masking low complexity seeds... [0.188s] Searching alignments... [44.294s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.023s] Building query seed array... [1.61s] Computing hash join... [4.828s] Masking low complexity seeds... [0.181s] Searching alignments... [43.613s] Deallocating memory... [0s] Deallocating buffers... [0.126s] Clearing query masking... [1.32s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.871s] Sorting trace points... [1.644s] Computing alignments... [47.768s] Deallocating buffers... [0.034s] Loading trace points... [0.058s] Sorting trace points... [1.624s] Computing alignments... [48.744s] Deallocating buffers... [0.024s] Loading trace points... [0.147s] Sorting trace points... [1.585s] Computing alignments... [46.947s] Deallocating buffers... [0.029s] Loading trace points... [0.232s] Sorting trace points... [1.642s] Computing alignments... [47.628s] Deallocating buffers... [0.034s] Loading trace points... [0.135s] Sorting trace points... [1.291s] Computing alignments... [46.878s] Deallocating buffers... [0.032s] Loading trace points... [0.158s] Sorting trace points... [1.693s] Computing alignments... [47.973s] Deallocating buffers... [0.034s] Loading trace points... [0.093s] Sorting trace points... [1.276s] Computing alignments... [46.817s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.368s] Computing alignments... [45.361s] Deallocating buffers... [0.031s] Loading trace points... [0s] [401.372s] Deallocating reference... [0.077s] Loading reference sequences... [25.585s] Masking reference... [25.01s] Initializing dictionary... [0.064s] Initializing temporary storage... [0.008s] Building reference histograms... [26.476s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.663s] Building query seed array... [1.823s] Computing hash join... [4.023s] Masking low complexity seeds... [0.188s] Searching alignments... [117.167s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.995s] Building query seed array... [2.107s] Computing hash join... [4.024s] Masking low complexity seeds... [0.183s] Searching alignments... [50.097s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.557s] Building query seed array... [2.13s] Computing hash join... [4.011s] Masking low complexity seeds... [0.187s] Searching alignments... [39.179s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.189s] Building query seed array... [1.728s] Computing hash join... [3.984s] Masking low complexity seeds... [0.191s] Searching alignments... [40.136s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.477s] Building query seed array... [1.666s] Computing hash join... [3.988s] Masking low complexity seeds... [0.178s] Searching alignments... [49.401s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.942s] Building query seed array... [1.824s] Computing hash join... [3.907s] Masking low complexity seeds... [0.171s] Searching alignments... [47.07s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.757s] Building query seed array... [1.988s] Computing hash join... [3.929s] Masking low complexity seeds... [0.184s] Searching alignments... [37.252s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.277s] Building query seed array... [1.59s] Computing hash join... [3.884s] Masking low complexity seeds... [0.175s] Searching alignments... [35.227s] Deallocating memory... [0s] Deallocating buffers... [0.118s] Clearing query masking... [1.315s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [12.286s] Sorting trace points... [1.986s] Computing alignments... [55.541s] Deallocating buffers... [0.035s] Loading trace points... [0.217s] Sorting trace points... [1.571s] Computing alignments... [57.164s] Deallocating buffers... [0.036s] Loading trace points... [0.225s] Sorting trace points... [1.786s] Computing alignments... [56.237s] Deallocating buffers... [0.037s] Loading trace points... [0.225s] Sorting trace points... [1.928s] Computing alignments... [55.935s] Deallocating buffers... [0.035s] Loading trace points... [0.061s] Sorting trace points... [1.954s] Computing alignments... [54.431s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [0.605s] Computing alignments... [18.117s] Deallocating buffers... [0.013s] Loading trace points... [0s] [320.753s] Deallocating reference... [0.066s] Loading reference sequences... [0.063s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1417.83s] [1417.83s] Deallocating queries... [0.053s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.503s] [4.496s] Closing the database... [0s] Cleaning up... [0s] Total time = 17599.9s Reported 1437186775 pairwise alignments, 1437186775 HSPs. 4375089 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH09-28.trimmed.R2.fastq.gz complete: CH09-28.trimmed.R2.blastx.meganized.daa Now MEGANizing CH09-28.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH09-28.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (226.3s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2,476.6s) Total reads: 4,375,089 With hits: 4,375,089 Alignments: 1,114,243,858 Assig. Taxonomy: 1,845,150 Assig. SEED: 125,288 Assig. EGGNOG: 57,427 Assig. GTDB: 298,702 Assig. EC: 273,779 Assig. INTERPRO2GO: 803,195 MinSupport set to: 2187 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 7,037 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (13.2s) Min-supp. changes: 5,948 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.7s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 183 Class. SEED: 532 Class. EGGNOG: 1,875 Class. GTDB: 64 Class. EC: 2,562 Class. INTERPRO2GO: 8,867 Total time: 2,735s Peak memory: 35 of 195.3G MEGANization of CH09-28.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-08.trimmed.R1.fastq.gz... 5015521ae739a3bae26eb53c242b453d /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-08.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-08.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.285s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.75s] Opening the output file... [0s] Loading query sequences... [93.767s] Masking queries... [25.242s] Algorithm: Double-indexed Building query histograms... [19.116s] Loading reference sequences... [30.257s] Masking reference... [32.039s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.914s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.455s] Building query seed array... [2.288s] Computing hash join... [5.243s] Masking low complexity seeds... [0.222s] Searching alignments... [709.533s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.962s] Building query seed array... [2.533s] Computing hash join... [5.066s] Masking low complexity seeds... [0.227s] Searching alignments... [301.442s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.385s] Building query seed array... [2.663s] Computing hash join... [4.972s] Masking low complexity seeds... [0.221s] Searching alignments... [227.135s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.944s] Building query seed array... [2.183s] Computing hash join... [4.972s] Masking low complexity seeds... [0.229s] Searching alignments... [234.951s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.823s] Building query seed array... [1.994s] Computing hash join... [4.898s] Masking low complexity seeds... [0.217s] Searching alignments... [329.389s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.627s] Building query seed array... [2.319s] Computing hash join... [4.979s] Masking low complexity seeds... [0.219s] Searching alignments... [253.766s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.372s] Building query seed array... [2.452s] Computing hash join... [4.831s] Masking low complexity seeds... [0.217s] Searching alignments... [195.145s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.818s] Building query seed array... [2.075s] Computing hash join... [4.861s] Masking low complexity seeds... [0.21s] Searching alignments... [187.292s] Deallocating memory... [0.001s] Deallocating buffers... [0.133s] Clearing query masking... [1.508s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [16.891s] Sorting trace points... [3.359s] Computing alignments... [81.503s] Deallocating buffers... [0.055s] Loading trace points... [0.089s] Sorting trace points... [2.29s] Computing alignments... [81.201s] Deallocating buffers... [0.06s] Loading trace points... [0.086s] Sorting trace points... [3.15s] Computing alignments... [81.52s] Deallocating buffers... [0.054s] Loading trace points... [0.085s] Sorting trace points... [3.27s] Computing alignments... [86.675s] Deallocating buffers... [0.069s] Loading trace points... [0.056s] Sorting trace points... [3.228s] Computing alignments... [81.926s] Deallocating buffers... [0.055s] Loading trace points... [0.059s] Sorting trace points... [2.321s] Computing alignments... [81.87s] Deallocating buffers... [0.06s] Loading trace points... [0.001s] Sorting trace points... [3.164s] Computing alignments... [83.32s] Deallocating buffers... [0.066s] Loading trace points... [0.087s] Sorting trace points... [3.106s] Computing alignments... [86.253s] Deallocating buffers... [0.068s] Loading trace points... [0.183s] Sorting trace points... [2.689s] Computing alignments... [82.034s] Deallocating buffers... [0.057s] Loading trace points... [0.088s] Sorting trace points... [2.367s] Computing alignments... [83.697s] Deallocating buffers... [0.062s] Loading trace points... [0.179s] Sorting trace points... [3.31s] Computing alignments... [84.824s] Deallocating buffers... [0.042s] Loading trace points... [0.086s] Sorting trace points... [3.231s] Computing alignments... [85.898s] Deallocating buffers... [0.06s] Loading trace points... [0.064s] Sorting trace points... [3.366s] Computing alignments... [82.792s] Deallocating buffers... [0.055s] Loading trace points... [0.063s] Sorting trace points... [3.183s] Computing alignments... [83.686s] Deallocating buffers... [0.055s] Loading trace points... [0.063s] Sorting trace points... [3.292s] Computing alignments... [84.61s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [3.284s] Computing alignments... [85.485s] Deallocating buffers... [0.058s] Loading trace points... [0s] [1405.02s] Deallocating reference... [0.069s] Loading reference sequences... [29.635s] Masking reference... [30.876s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.838s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.004s] Building query seed array... [2.258s] Computing hash join... [5.035s] Masking low complexity seeds... [0.222s] Searching alignments... [694.642s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.543s] Building query seed array... [2.486s] Computing hash join... [5.029s] Masking low complexity seeds... [0.228s] Searching alignments... [303.481s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.434s] Building query seed array... [2.673s] Computing hash join... [5.1s] Masking low complexity seeds... [0.236s] Searching alignments... [222.768s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.951s] Building query seed array... [2.213s] Computing hash join... [4.984s] Masking low complexity seeds... [0.227s] Searching alignments... [228.497s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.175s] Building query seed array... [1.98s] Computing hash join... [4.82s] Masking low complexity seeds... [0.221s] Searching alignments... [330.776s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.015s] Building query seed array... [2.289s] Computing hash join... [4.834s] Masking low complexity seeds... [0.209s] Searching alignments... [247.63s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.236s] Building query seed array... [2.432s] Computing hash join... [4.917s] Masking low complexity seeds... [0.217s] Searching alignments... [192.195s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.258s] Building query seed array... [2.097s] Computing hash join... [4.914s] Masking low complexity seeds... [0.223s] Searching alignments... [187.535s] Deallocating memory... [0.003s] Deallocating buffers... [0.134s] Clearing query masking... [1.494s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [17.219s] Sorting trace points... [3.229s] Computing alignments... [79.422s] Deallocating buffers... [0.056s] Loading trace points... [0.061s] Sorting trace points... [3.256s] Computing alignments... [78.794s] Deallocating buffers... [0.065s] Loading trace points... [0.061s] Sorting trace points... [3.191s] Computing alignments... [79.676s] Deallocating buffers... [0.057s] Loading trace points... [0.083s] Sorting trace points... [3.411s] Computing alignments... [84.355s] Deallocating buffers... [0.059s] Loading trace points... [0.081s] Sorting trace points... [3.213s] Computing alignments... [79.389s] Deallocating buffers... [0.064s] Loading trace points... [0.315s] Sorting trace points... [2.691s] Computing alignments... [79.438s] Deallocating buffers... [0.055s] Loading trace points... [0.091s] Sorting trace points... [2.714s] Computing alignments... [80.949s] Deallocating buffers... [0.056s] Loading trace points... [0.069s] Sorting trace points... [3.374s] Computing alignments... [83.873s] Deallocating buffers... [0.059s] Loading trace points... [0.11s] Sorting trace points... [3.255s] Computing alignments... [79.816s] Deallocating buffers... [0.051s] Loading trace points... [0.079s] Sorting trace points... [3.255s] Computing alignments... [81.026s] Deallocating buffers... [0.065s] Loading trace points... [0.494s] Sorting trace points... [3.061s] Computing alignments... [82.247s] Deallocating buffers... [0.058s] Loading trace points... [0.187s] Sorting trace points... [3.226s] Computing alignments... [83.717s] Deallocating buffers... [0.069s] Loading trace points... [0.111s] Sorting trace points... [2.634s] Computing alignments... [80.784s] Deallocating buffers... [0.061s] Loading trace points... [0.308s] Sorting trace points... [3.318s] Computing alignments... [80.864s] Deallocating buffers... [0.057s] Loading trace points... [0.221s] Sorting trace points... [3.159s] Computing alignments... [82.01s] Deallocating buffers... [0.067s] Loading trace points... [0s] Sorting trace points... [3.297s] Computing alignments... [82.77s] Deallocating buffers... [0.052s] Loading trace points... [0s] [1369.98s] Deallocating reference... [0.066s] Loading reference sequences... [47.494s] Masking reference... [32.122s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.011s] Building reference histograms... [31.931s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.102s] Building query seed array... [2.233s] Computing hash join... [5.082s] Masking low complexity seeds... [0.229s] Searching alignments... [724.223s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.147s] Building query seed array... [2.519s] Computing hash join... [5.091s] Masking low complexity seeds... [0.232s] Searching alignments... [303.483s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.064s] Building query seed array... [2.638s] Computing hash join... [4.985s] Masking low complexity seeds... [0.226s] Searching alignments... [232.931s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.893s] Building query seed array... [2.227s] Computing hash join... [4.974s] Masking low complexity seeds... [0.225s] Searching alignments... [236.409s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.082s] Building query seed array... [2.059s] Computing hash join... [4.862s] Masking low complexity seeds... [0.216s] Searching alignments... [329.423s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.988s] Building query seed array... [2.283s] Computing hash join... [4.888s] Masking low complexity seeds... [0.215s] Searching alignments... [254.045s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.13s] Building query seed array... [2.458s] Computing hash join... [4.94s] Masking low complexity seeds... [0.214s] Searching alignments... [192.232s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.228s] Building query seed array... [2.081s] Computing hash join... [4.921s] Masking low complexity seeds... [0.218s] Searching alignments... [189.873s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.47s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.637s] Sorting trace points... [3.343s] Computing alignments... [75.821s] Deallocating buffers... [0.056s] Loading trace points... [0.094s] Sorting trace points... [2.829s] Computing alignments... [74.897s] Deallocating buffers... [0.063s] Loading trace points... [0.079s] Sorting trace points... [3.148s] Computing alignments... [75.596s] Deallocating buffers... [0.061s] Loading trace points... [1.157s] Sorting trace points... [3.272s] Computing alignments... [79.653s] Deallocating buffers... [0.055s] Loading trace points... [55.219s] Sorting trace points... [3.095s] Computing alignments... [75.162s] Deallocating buffers... [0.055s] Loading trace points... [58.23s] Sorting trace points... [2.67s] Computing alignments... [75.292s] Deallocating buffers... [0.056s] Loading trace points... [71.253s] Sorting trace points... [3.147s] Computing alignments... [76.804s] Deallocating buffers... [0.056s] Loading trace points... [78.704s] Sorting trace points... [3.295s] Computing alignments... [78.684s] Deallocating buffers... [0.066s] Loading trace points... [71.948s] Sorting trace points... [3.059s] Computing alignments... [75.677s] Deallocating buffers... [0.055s] Loading trace points... [65.774s] Sorting trace points... [3.193s] Computing alignments... [76.759s] Deallocating buffers... [0.057s] Loading trace points... [30.668s] Sorting trace points... [2.763s] Computing alignments... [78.877s] Deallocating buffers... [0.059s] Loading trace points... [1.005s] Sorting trace points... [3.029s] Computing alignments... [79.541s] Deallocating buffers... [0.061s] Loading trace points... [0.458s] Sorting trace points... [2.521s] Computing alignments... [77.485s] Deallocating buffers... [0.057s] Loading trace points... [1.067s] Sorting trace points... [3.133s] Computing alignments... [77.317s] Deallocating buffers... [0.057s] Loading trace points... [0.427s] Sorting trace points... [2.494s] Computing alignments... [77.993s] Deallocating buffers... [0.064s] Loading trace points... [0s] Sorting trace points... [2.871s] Computing alignments... [78.763s] Deallocating buffers... [0.068s] Loading trace points... [0s] [1735.97s] Deallocating reference... [0.076s] Loading reference sequences... [75.322s] Masking reference... [31.108s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.894s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.169s] Building query seed array... [2.314s] Computing hash join... [5.05s] Masking low complexity seeds... [0.221s] Searching alignments... [707.564s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.387s] Building query seed array... [2.581s] Computing hash join... [5.007s] Masking low complexity seeds... [0.222s] Searching alignments... [311.513s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.271s] Building query seed array... [2.714s] Computing hash join... [5.028s] Masking low complexity seeds... [0.246s] Searching alignments... [273.294s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.274s] Building query seed array... [2.214s] Computing hash join... [4.904s] Masking low complexity seeds... [0.223s] Searching alignments... [249.117s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.981s] Building query seed array... [1.953s] Computing hash join... [4.772s] Masking low complexity seeds... [0.21s] Searching alignments... [346.762s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.514s] Building query seed array... [2.34s] Computing hash join... [4.919s] Masking low complexity seeds... [0.22s] Searching alignments... [335.39s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.181s] Building query seed array... [2.445s] Computing hash join... [4.868s] Masking low complexity seeds... [0.219s] Searching alignments... [251.042s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.011s] Building query seed array... [2.052s] Computing hash join... [4.866s] Masking low complexity seeds... [0.219s] Searching alignments... [226.826s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.55s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [418.123s] Sorting trace points... [3.116s] Computing alignments... [78.009s] Deallocating buffers... [0.04s] Loading trace points... [347.246s] Sorting trace points... [3.013s] Computing alignments... [77.243s] Deallocating buffers... [0.055s] Loading trace points... [217.264s] Sorting trace points... [3.185s] Computing alignments... [77.877s] Deallocating buffers... [0.056s] Loading trace points... [156.731s] Sorting trace points... [2.454s] Computing alignments... [82.999s] Deallocating buffers... [0.065s] Loading trace points... [151.273s] Sorting trace points... [2.327s] Computing alignments... [78.424s] Deallocating buffers... [0.059s] Loading trace points... [129.024s] Sorting trace points... [3.166s] Computing alignments... [78.187s] Deallocating buffers... [0.061s] Loading trace points... [122.265s] Sorting trace points... [3.108s] Computing alignments... [79.212s] Deallocating buffers... [0.056s] Loading trace points... [181.072s] Sorting trace points... [3.265s] Computing alignments... [83.139s] Deallocating buffers... [0.066s] Loading trace points... [0.106s] Sorting trace points... [2.595s] Computing alignments... [79.118s] Deallocating buffers... [0.058s] Loading trace points... [0.313s] Sorting trace points... [3.212s] Computing alignments... [80.496s] Deallocating buffers... [0.065s] Loading trace points... [0.159s] Sorting trace points... [3.411s] Computing alignments... [81.375s] Deallocating buffers... [0.054s] Loading trace points... [0.062s] Sorting trace points... [3.296s] Computing alignments... [82.69s] Deallocating buffers... [0.065s] Loading trace points... [0.163s] Sorting trace points... [3.189s] Computing alignments... [80.01s] Deallocating buffers... [0.064s] Loading trace points... [0.074s] Sorting trace points... [3.2s] Computing alignments... [80.133s] Deallocating buffers... [0.057s] Loading trace points... [0.001s] Sorting trace points... [3.285s] Computing alignments... [81.036s] Deallocating buffers... [0.059s] Loading trace points... [0s] Sorting trace points... [3.28s] Computing alignments... [81.84s] Deallocating buffers... [0.058s] Loading trace points... [0s] [3056.25s] Deallocating reference... [0.07s] Loading reference sequences... [29.98s] Masking reference... [31.271s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.516s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.292s] Building query seed array... [2.323s] Computing hash join... [4.968s] Masking low complexity seeds... [0.221s] Searching alignments... [702.125s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.56s] Building query seed array... [2.542s] Computing hash join... [5.127s] Masking low complexity seeds... [0.234s] Searching alignments... [302.749s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.687s] Building query seed array... [2.697s] Computing hash join... [4.942s] Masking low complexity seeds... [0.227s] Searching alignments... [225.228s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.105s] Building query seed array... [2.172s] Computing hash join... [5.032s] Masking low complexity seeds... [0.223s] Searching alignments... [236.765s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.368s] Building query seed array... [1.963s] Computing hash join... [4.856s] Masking low complexity seeds... [0.218s] Searching alignments... [325.431s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.086s] Building query seed array... [2.3s] Computing hash join... [4.876s] Masking low complexity seeds... [0.214s] Searching alignments... [252.311s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.718s] Building query seed array... [2.411s] Computing hash join... [4.893s] Masking low complexity seeds... [0.214s] Searching alignments... [193.545s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.225s] Building query seed array... [2.094s] Computing hash join... [4.869s] Masking low complexity seeds... [0.213s] Searching alignments... [191.105s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.681s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.671s] Sorting trace points... [3.226s] Computing alignments... [79.969s] Deallocating buffers... [0.056s] Loading trace points... [0.044s] Sorting trace points... [2.306s] Computing alignments... [79.194s] Deallocating buffers... [0.06s] Loading trace points... [0.058s] Sorting trace points... [3.18s] Computing alignments... [79.767s] Deallocating buffers... [0.065s] Loading trace points... [0.114s] Sorting trace points... [3.303s] Computing alignments... [84.676s] Deallocating buffers... [0.071s] Loading trace points... [0.068s] Sorting trace points... [3.3s] Computing alignments... [79.683s] Deallocating buffers... [0.064s] Loading trace points... [0.082s] Sorting trace points... [3.205s] Computing alignments... [79.855s] Deallocating buffers... [0.066s] Loading trace points... [0.081s] Sorting trace points... [3.229s] Computing alignments... [81.345s] Deallocating buffers... [0.068s] Loading trace points... [0.064s] Sorting trace points... [3.377s] Computing alignments... [83.647s] Deallocating buffers... [0.069s] Loading trace points... [0.05s] Sorting trace points... [3.118s] Computing alignments... [80.179s] Deallocating buffers... [0.065s] Loading trace points... [0.072s] Sorting trace points... [3.218s] Computing alignments... [81.685s] Deallocating buffers... [0.066s] Loading trace points... [0.075s] Sorting trace points... [3.137s] Computing alignments... [82.057s] Deallocating buffers... [0.058s] Loading trace points... [0.072s] Sorting trace points... [2.823s] Computing alignments... [83.862s] Deallocating buffers... [0.063s] Loading trace points... [0.087s] Sorting trace points... [3.159s] Computing alignments... [80.802s] Deallocating buffers... [0.066s] Loading trace points... [0.727s] Sorting trace points... [3.201s] Computing alignments... [80.965s] Deallocating buffers... [0.058s] Loading trace points... [0.103s] Sorting trace points... [3.288s] Computing alignments... [82.103s] Deallocating buffers... [0.061s] Loading trace points... [0s] Sorting trace points... [3.31s] Computing alignments... [83.392s] Deallocating buffers... [0.068s] Loading trace points... [0s] [1373.09s] Deallocating reference... [0.07s] Loading reference sequences... [29.449s] Masking reference... [30.862s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.353s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.074s] Building query seed array... [2.251s] Computing hash join... [5.07s] Masking low complexity seeds... [0.226s] Searching alignments... [694.475s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.679s] Building query seed array... [2.547s] Computing hash join... [4.95s] Masking low complexity seeds... [0.231s] Searching alignments... [301.831s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.537s] Building query seed array... [2.699s] Computing hash join... [4.947s] Masking low complexity seeds... [0.229s] Searching alignments... [224.841s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.198s] Building query seed array... [2.262s] Computing hash join... [5.045s] Masking low complexity seeds... [0.225s] Searching alignments... [237.607s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.843s] Building query seed array... [2.032s] Computing hash join... [4.848s] Masking low complexity seeds... [0.221s] Searching alignments... [321.795s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.032s] Building query seed array... [2.332s] Computing hash join... [4.829s] Masking low complexity seeds... [0.212s] Searching alignments... [255.89s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.318s] Building query seed array... [2.482s] Computing hash join... [4.893s] Masking low complexity seeds... [0.216s] Searching alignments... [193.473s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.222s] Building query seed array... [2.13s] Computing hash join... [4.839s] Masking low complexity seeds... [0.205s] Searching alignments... [194.287s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.549s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.728s] Sorting trace points... [3.268s] Computing alignments... [79.817s] Deallocating buffers... [0.056s] Loading trace points... [0.082s] Sorting trace points... [2.657s] Computing alignments... [79.577s] Deallocating buffers... [0.056s] Loading trace points... [0.068s] Sorting trace points... [2.353s] Computing alignments... [80.227s] Deallocating buffers... [0.057s] Loading trace points... [0.063s] Sorting trace points... [2.498s] Computing alignments... [84.885s] Deallocating buffers... [0.065s] Loading trace points... [0.089s] Sorting trace points... [3.204s] Computing alignments... [79.743s] Deallocating buffers... [0.063s] Loading trace points... [0.061s] Sorting trace points... [3.153s] Computing alignments... [80.127s] Deallocating buffers... [0.054s] Loading trace points... [0.07s] Sorting trace points... [2.578s] Computing alignments... [81.633s] Deallocating buffers... [0.056s] Loading trace points... [0.09s] Sorting trace points... [3.301s] Computing alignments... [84.193s] Deallocating buffers... [0.066s] Loading trace points... [0.072s] Sorting trace points... [3.139s] Computing alignments... [80.681s] Deallocating buffers... [0.052s] Loading trace points... [0.055s] Sorting trace points... [3.343s] Computing alignments... [81.407s] Deallocating buffers... [0.057s] Loading trace points... [0.053s] Sorting trace points... [3.277s] Computing alignments... [82.544s] Deallocating buffers... [0.056s] Loading trace points... [0.084s] Sorting trace points... [3.086s] Computing alignments... [84.274s] Deallocating buffers... [0.066s] Loading trace points... [0.002s] Sorting trace points... [3.18s] Computing alignments... [80.7s] Deallocating buffers... [0.053s] Loading trace points... [0.002s] Sorting trace points... [3.309s] Computing alignments... [81.069s] Deallocating buffers... [0.051s] Loading trace points... [0.046s] Sorting trace points... [3.289s] Computing alignments... [82.651s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [3.176s] Computing alignments... [83.161s] Deallocating buffers... [0.068s] Loading trace points... [0s] [1374.14s] Deallocating reference... [0.07s] Loading reference sequences... [29.671s] Masking reference... [30.874s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.802s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.402s] Building query seed array... [2.306s] Computing hash join... [5.005s] Masking low complexity seeds... [0.219s] Searching alignments... [696.158s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.325s] Building query seed array... [2.602s] Computing hash join... [5.003s] Masking low complexity seeds... [0.231s] Searching alignments... [305.829s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.892s] Building query seed array... [2.747s] Computing hash join... [5.064s] Masking low complexity seeds... [0.231s] Searching alignments... [226.842s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.323s] Building query seed array... [2.204s] Computing hash join... [5.009s] Masking low complexity seeds... [0.229s] Searching alignments... [235.311s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.315s] Building query seed array... [2.035s] Computing hash join... [4.872s] Masking low complexity seeds... [0.221s] Searching alignments... [330.422s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.879s] Building query seed array... [2.308s] Computing hash join... [4.786s] Masking low complexity seeds... [0.21s] Searching alignments... [247.3s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.453s] Building query seed array... [2.487s] Computing hash join... [4.885s] Masking low complexity seeds... [0.232s] Searching alignments... [189.391s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.755s] Building query seed array... [2.124s] Computing hash join... [5.444s] Masking low complexity seeds... [0.225s] Searching alignments... [188.517s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.549s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.582s] Sorting trace points... [3.295s] Computing alignments... [80.246s] Deallocating buffers... [0.058s] Loading trace points... [0.075s] Sorting trace points... [2.319s] Computing alignments... [79.706s] Deallocating buffers... [0.057s] Loading trace points... [0.066s] Sorting trace points... [3.181s] Computing alignments... [80.43s] Deallocating buffers... [0.055s] Loading trace points... [0.051s] Sorting trace points... [2.382s] Computing alignments... [85.357s] Deallocating buffers... [0.064s] Loading trace points... [0.08s] Sorting trace points... [2.389s] Computing alignments... [80.084s] Deallocating buffers... [0.06s] Loading trace points... [0.031s] Sorting trace points... [2.815s] Computing alignments... [80.297s] Deallocating buffers... [0.056s] Loading trace points... [0.066s] Sorting trace points... [2.425s] Computing alignments... [81.802s] Deallocating buffers... [0.058s] Loading trace points... [0.06s] Sorting trace points... [2.456s] Computing alignments... [84.169s] Deallocating buffers... [0.062s] Loading trace points... [0.092s] Sorting trace points... [3.178s] Computing alignments... [81.037s] Deallocating buffers... [0.054s] Loading trace points... [0.06s] Sorting trace points... [3.316s] Computing alignments... [82.293s] Deallocating buffers... [0.056s] Loading trace points... [0.08s] Sorting trace points... [2.768s] Computing alignments... [83.028s] Deallocating buffers... [0.056s] Loading trace points... [0.073s] Sorting trace points... [2.509s] Computing alignments... [85.244s] Deallocating buffers... [0.062s] Loading trace points... [0.002s] Sorting trace points... [3.109s] Computing alignments... [81.581s] Deallocating buffers... [0.055s] Loading trace points... [0.042s] Sorting trace points... [3.125s] Computing alignments... [81.545s] Deallocating buffers... [0.049s] Loading trace points... [0.047s] Sorting trace points... [3.091s] Computing alignments... [83.015s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [3.233s] Computing alignments... [83.444s] Deallocating buffers... [0.058s] Loading trace points... [0s] [1377.29s] Deallocating reference... [0.071s] Loading reference sequences... [31.701s] Masking reference... [31.691s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.282s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.193s] Building query seed array... [2.271s] Computing hash join... [5.015s] Masking low complexity seeds... [0.228s] Searching alignments... [694.711s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.231s] Building query seed array... [2.596s] Computing hash join... [4.988s] Masking low complexity seeds... [0.224s] Searching alignments... [300.349s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.288s] Building query seed array... [2.692s] Computing hash join... [5.07s] Masking low complexity seeds... [0.227s] Searching alignments... [228.465s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.063s] Building query seed array... [2.263s] Computing hash join... [4.98s] Masking low complexity seeds... [0.228s] Searching alignments... [235.183s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.53s] Building query seed array... [2.027s] Computing hash join... [4.821s] Masking low complexity seeds... [0.221s] Searching alignments... [324.375s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.24s] Building query seed array... [2.27s] Computing hash join... [4.805s] Masking low complexity seeds... [0.21s] Searching alignments... [249.848s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.111s] Building query seed array... [2.477s] Computing hash join... [4.916s] Masking low complexity seeds... [0.214s] Searching alignments... [193.474s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.823s] Building query seed array... [2.116s] Computing hash join... [4.859s] Masking low complexity seeds... [0.208s] Searching alignments... [188.27s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.544s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.402s] Sorting trace points... [3.303s] Computing alignments... [77.233s] Deallocating buffers... [0.051s] Loading trace points... [0.063s] Sorting trace points... [2.937s] Computing alignments... [76.728s] Deallocating buffers... [0.041s] Loading trace points... [0.001s] Sorting trace points... [2.279s] Computing alignments... [77.395s] Deallocating buffers... [0.059s] Loading trace points... [0.001s] Sorting trace points... [3.195s] Computing alignments... [82.225s] Deallocating buffers... [0.059s] Loading trace points... [0.045s] Sorting trace points... [3.22s] Computing alignments... [77.358s] Deallocating buffers... [0.064s] Loading trace points... [0.052s] Sorting trace points... [3.109s] Computing alignments... [77.363s] Deallocating buffers... [0.052s] Loading trace points... [0.056s] Sorting trace points... [3.311s] Computing alignments... [78.566s] Deallocating buffers... [0.065s] Loading trace points... [0.067s] Sorting trace points... [3.05s] Computing alignments... [81.211s] Deallocating buffers... [0.057s] Loading trace points... [0.053s] Sorting trace points... [2.291s] Computing alignments... [77.89s] Deallocating buffers... [0.06s] Loading trace points... [0.635s] Sorting trace points... [3.313s] Computing alignments... [78.875s] Deallocating buffers... [0.056s] Loading trace points... [0.063s] Sorting trace points... [3.332s] Computing alignments... [79.784s] Deallocating buffers... [0.056s] Loading trace points... [0.07s] Sorting trace points... [3.159s] Computing alignments... [80.906s] Deallocating buffers... [0.067s] Loading trace points... [0.08s] Sorting trace points... [3.107s] Computing alignments... [78.251s] Deallocating buffers... [0.056s] Loading trace points... [0.089s] Sorting trace points... [2.29s] Computing alignments... [78.695s] Deallocating buffers... [0.062s] Loading trace points... [0.078s] Sorting trace points... [2.798s] Computing alignments... [79.681s] Deallocating buffers... [0.064s] Loading trace points... [0s] Sorting trace points... [2.789s] Computing alignments... [80.294s] Deallocating buffers... [0.059s] Loading trace points... [0s] [1328.66s] Deallocating reference... [0.067s] Loading reference sequences... [29.474s] Masking reference... [30.861s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.263s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.584s] Building query seed array... [2.287s] Computing hash join... [5.01s] Masking low complexity seeds... [0.227s] Searching alignments... [700.557s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.338s] Building query seed array... [2.53s] Computing hash join... [5.025s] Masking low complexity seeds... [0.225s] Searching alignments... [301.33s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.6s] Building query seed array... [2.707s] Computing hash join... [5.015s] Masking low complexity seeds... [0.223s] Searching alignments... [226.256s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.425s] Building query seed array... [2.256s] Computing hash join... [4.857s] Masking low complexity seeds... [0.228s] Searching alignments... [238.251s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.088s] Building query seed array... [2.041s] Computing hash join... [4.815s] Masking low complexity seeds... [0.217s] Searching alignments... [326.426s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.317s] Building query seed array... [2.345s] Computing hash join... [4.907s] Masking low complexity seeds... [0.217s] Searching alignments... [246.08s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.616s] Building query seed array... [2.432s] Computing hash join... [4.862s] Masking low complexity seeds... [0.218s] Searching alignments... [194.319s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.065s] Building query seed array... [2.084s] Computing hash join... [4.853s] Masking low complexity seeds... [0.224s] Searching alignments... [191.651s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.518s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.78s] Sorting trace points... [3.308s] Computing alignments... [76.804s] Deallocating buffers... [0.054s] Loading trace points... [0.002s] Sorting trace points... [2.603s] Computing alignments... [76.371s] Deallocating buffers... [0.058s] Loading trace points... [0.089s] Sorting trace points... [3.168s] Computing alignments... [76.877s] Deallocating buffers... [0.055s] Loading trace points... [0.048s] Sorting trace points... [3.266s] Computing alignments... [81.117s] Deallocating buffers... [0.066s] Loading trace points... [0.078s] Sorting trace points... [3.046s] Computing alignments... [76.739s] Deallocating buffers... [0.064s] Loading trace points... [0.045s] Sorting trace points... [2.333s] Computing alignments... [76.558s] Deallocating buffers... [0.06s] Loading trace points... [0.081s] Sorting trace points... [3.246s] Computing alignments... [78.425s] Deallocating buffers... [0.055s] Loading trace points... [0.1s] Sorting trace points... [3.347s] Computing alignments... [80.682s] Deallocating buffers... [0.068s] Loading trace points... [0.074s] Sorting trace points... [2.381s] Computing alignments... [77.593s] Deallocating buffers... [0.059s] Loading trace points... [0.106s] Sorting trace points... [2.842s] Computing alignments... [78.273s] Deallocating buffers... [0.065s] Loading trace points... [0.068s] Sorting trace points... [2.944s] Computing alignments... [79.356s] Deallocating buffers... [0.058s] Loading trace points... [0.051s] Sorting trace points... [3.406s] Computing alignments... [80.587s] Deallocating buffers... [0.059s] Loading trace points... [0.037s] Sorting trace points... [2.516s] Computing alignments... [77.975s] Deallocating buffers... [0.059s] Loading trace points... [0.043s] Sorting trace points... [3.15s] Computing alignments... [78.316s] Deallocating buffers... [0.057s] Loading trace points... [0.182s] Sorting trace points... [2.673s] Computing alignments... [79.241s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [2.439s] Computing alignments... [79.995s] Deallocating buffers... [0.06s] Loading trace points... [0s] [1320.42s] Deallocating reference... [0.065s] Loading reference sequences... [29.592s] Masking reference... [30.847s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.805s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.339s] Building query seed array... [2.231s] Computing hash join... [5.066s] Masking low complexity seeds... [0.228s] Searching alignments... [703.339s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.998s] Building query seed array... [2.508s] Computing hash join... [4.916s] Masking low complexity seeds... [0.228s] Searching alignments... [300.579s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.384s] Building query seed array... [2.706s] Computing hash join... [5.032s] Masking low complexity seeds... [0.226s] Searching alignments... [225.812s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.055s] Building query seed array... [2.205s] Computing hash join... [4.965s] Masking low complexity seeds... [0.229s] Searching alignments... [234.981s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.09s] Building query seed array... [2.035s] Computing hash join... [4.781s] Masking low complexity seeds... [0.219s] Searching alignments... [319.664s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.221s] Building query seed array... [2.351s] Computing hash join... [4.858s] Masking low complexity seeds... [0.217s] Searching alignments... [252.971s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.588s] Building query seed array... [2.473s] Computing hash join... [4.852s] Masking low complexity seeds... [0.211s] Searching alignments... [191.612s] Deallocating memory... [0.002s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.857s] Building query seed array... [2.116s] Computing hash join... [4.835s] Masking low complexity seeds... [0.209s] Searching alignments... [193.821s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.516s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.564s] Sorting trace points... [3.215s] Computing alignments... [74.908s] Deallocating buffers... [0.047s] Loading trace points... [0.077s] Sorting trace points... [3.181s] Computing alignments... [74.38s] Deallocating buffers... [0.063s] Loading trace points... [0.042s] Sorting trace points... [2.557s] Computing alignments... [74.928s] Deallocating buffers... [0.047s] Loading trace points... [0.051s] Sorting trace points... [3.44s] Computing alignments... [79.429s] Deallocating buffers... [0.043s] Loading trace points... [0.061s] Sorting trace points... [3.111s] Computing alignments... [75.054s] Deallocating buffers... [0.056s] Loading trace points... [0.061s] Sorting trace points... [3.268s] Computing alignments... [74.682s] Deallocating buffers... [0.056s] Loading trace points... [0.125s] Sorting trace points... [3.319s] Computing alignments... [76.287s] Deallocating buffers... [0.066s] Loading trace points... [0.063s] Sorting trace points... [3.135s] Computing alignments... [78.708s] Deallocating buffers... [0.058s] Loading trace points... [0.082s] Sorting trace points... [2.751s] Computing alignments... [75.636s] Deallocating buffers... [0.063s] Loading trace points... [0.086s] Sorting trace points... [3.344s] Computing alignments... [76.61s] Deallocating buffers... [0.057s] Loading trace points... [0.056s] Sorting trace points... [3.169s] Computing alignments... [77.763s] Deallocating buffers... [0.056s] Loading trace points... [0.052s] Sorting trace points... [2.749s] Computing alignments... [78.83s] Deallocating buffers... [0.045s] Loading trace points... [0.09s] Sorting trace points... [3.178s] Computing alignments... [76.146s] Deallocating buffers... [0.064s] Loading trace points... [0.068s] Sorting trace points... [2.822s] Computing alignments... [76.479s] Deallocating buffers... [0.058s] Loading trace points... [0.038s] Sorting trace points... [3.279s] Computing alignments... [77.037s] Deallocating buffers... [0.066s] Loading trace points... [0s] Sorting trace points... [3.349s] Computing alignments... [77.901s] Deallocating buffers... [0.054s] Loading trace points... [0s] [1293.17s] Deallocating reference... [0.064s] Loading reference sequences... [33.916s] Masking reference... [31.442s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.189s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.201s] Building query seed array... [2.286s] Computing hash join... [5.015s] Masking low complexity seeds... [0.229s] Searching alignments... [703.134s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.669s] Building query seed array... [2.519s] Computing hash join... [5.049s] Masking low complexity seeds... [0.237s] Searching alignments... [302.668s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.236s] Building query seed array... [2.633s] Computing hash join... [5.043s] Masking low complexity seeds... [0.223s] Searching alignments... [225.523s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.868s] Building query seed array... [2.233s] Computing hash join... [4.947s] Masking low complexity seeds... [0.231s] Searching alignments... [232.777s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.815s] Building query seed array... [1.991s] Computing hash join... [4.893s] Masking low complexity seeds... [0.215s] Searching alignments... [324.001s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.434s] Building query seed array... [2.269s] Computing hash join... [4.85s] Masking low complexity seeds... [0.212s] Searching alignments... [251.795s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.233s] Building query seed array... [2.49s] Computing hash join... [4.91s] Masking low complexity seeds... [0.217s] Searching alignments... [193.42s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.1s] Building query seed array... [2.105s] Computing hash join... [4.904s] Masking low complexity seeds... [0.214s] Searching alignments... [192.573s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.519s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.575s] Sorting trace points... [3.18s] Computing alignments... [86.823s] Deallocating buffers... [0.057s] Loading trace points... [0.041s] Sorting trace points... [3.121s] Computing alignments... [84.774s] Deallocating buffers... [0.055s] Loading trace points... [0.075s] Sorting trace points... [2.502s] Computing alignments... [86.314s] Deallocating buffers... [0.058s] Loading trace points... [0.079s] Sorting trace points... [3.322s] Computing alignments... [90.891s] Deallocating buffers... [0.068s] Loading trace points... [0.099s] Sorting trace points... [3.185s] Computing alignments... [85.905s] Deallocating buffers... [0.054s] Loading trace points... [0.09s] Sorting trace points... [3.073s] Computing alignments... [87.269s] Deallocating buffers... [0.056s] Loading trace points... [0.04s] Sorting trace points... [3.343s] Computing alignments... [87.795s] Deallocating buffers... [0.067s] Loading trace points... [0.06s] Sorting trace points... [2.552s] Computing alignments... [91.524s] Deallocating buffers... [0.064s] Loading trace points... [0.081s] Sorting trace points... [3.226s] Computing alignments... [86.352s] Deallocating buffers... [0.041s] Loading trace points... [0.035s] Sorting trace points... [2.332s] Computing alignments... [88.553s] Deallocating buffers... [0.06s] Loading trace points... [0.073s] Sorting trace points... [3.074s] Computing alignments... [88.203s] Deallocating buffers... [0.058s] Loading trace points... [0.072s] Sorting trace points... [3.345s] Computing alignments... [90.948s] Deallocating buffers... [0.069s] Loading trace points... [0.078s] Sorting trace points... [3.156s] Computing alignments... [86.412s] Deallocating buffers... [0.055s] Loading trace points... [0.073s] Sorting trace points... [3.055s] Computing alignments... [88.213s] Deallocating buffers... [0.058s] Loading trace points... [0.063s] Sorting trace points... [2.49s] Computing alignments... [90.441s] Deallocating buffers... [0.061s] Loading trace points... [0s] Sorting trace points... [2.775s] Computing alignments... [91.602s] Deallocating buffers... [0.061s] Loading trace points... [0s] [1478.34s] Deallocating reference... [0.071s] Loading reference sequences... [245.353s] Masking reference... [30.851s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.335s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.386s] Building query seed array... [2.32s] Computing hash join... [5.092s] Masking low complexity seeds... [0.231s] Searching alignments... [703.964s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.426s] Building query seed array... [2.547s] Computing hash join... [5.045s] Masking low complexity seeds... [0.227s] Searching alignments... [298.766s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.872s] Building query seed array... [2.631s] Computing hash join... [5.005s] Masking low complexity seeds... [0.222s] Searching alignments... [227.995s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.885s] Building query seed array... [2.207s] Computing hash join... [5.026s] Masking low complexity seeds... [0.222s] Searching alignments... [236.89s] Deallocating memory... [0.004s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.425s] Building query seed array... [2.014s] Computing hash join... [4.905s] Masking low complexity seeds... [0.216s] Searching alignments... [322.614s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.692s] Building query seed array... [2.328s] Computing hash join... [4.868s] Masking low complexity seeds... [0.21s] Searching alignments... [253.698s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.504s] Building query seed array... [2.407s] Computing hash join... [4.821s] Masking low complexity seeds... [0.218s] Searching alignments... [196.46s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.208s] Building query seed array... [2.048s] Computing hash join... [4.951s] Masking low complexity seeds... [0.224s] Searching alignments... [189.229s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.561s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [17.114s] Sorting trace points... [3.217s] Computing alignments... [77.201s] Deallocating buffers... [0.057s] Loading trace points... [0.088s] Sorting trace points... [3.28s] Computing alignments... [76.573s] Deallocating buffers... [0.053s] Loading trace points... [0.055s] Sorting trace points... [2.278s] Computing alignments... [77.279s] Deallocating buffers... [0.06s] Loading trace points... [0.049s] Sorting trace points... [2.495s] Computing alignments... [81.802s] Deallocating buffers... [0.063s] Loading trace points... [0.07s] Sorting trace points... [3.118s] Computing alignments... [77.135s] Deallocating buffers... [0.055s] Loading trace points... [0.053s] Sorting trace points... [3.2s] Computing alignments... [77.373s] Deallocating buffers... [0.065s] Loading trace points... [0.067s] Sorting trace points... [3.284s] Computing alignments... [78.821s] Deallocating buffers... [0.041s] Loading trace points... [0.078s] Sorting trace points... [2.657s] Computing alignments... [81.273s] Deallocating buffers... [0.058s] Loading trace points... [0.093s] Sorting trace points... [3.175s] Computing alignments... [78.174s] Deallocating buffers... [0.067s] Loading trace points... [0.107s] Sorting trace points... [3.253s] Computing alignments... [79.01s] Deallocating buffers... [0.05s] Loading trace points... [0.061s] Sorting trace points... [3.383s] Computing alignments... [80.01s] Deallocating buffers... [0.067s] Loading trace points... [1.163s] Sorting trace points... [3.396s] Computing alignments... [81.461s] Deallocating buffers... [0.058s] Loading trace points... [0.001s] Sorting trace points... [2.405s] Computing alignments... [78.802s] Deallocating buffers... [0.058s] Loading trace points... [0.002s] Sorting trace points... [3.097s] Computing alignments... [78.749s] Deallocating buffers... [0.055s] Loading trace points... [0.06s] Sorting trace points... [3.365s] Computing alignments... [79.797s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [2.425s] Computing alignments... [80.524s] Deallocating buffers... [0.064s] Loading trace points... [0s] [1332.09s] Deallocating reference... [0.065s] Loading reference sequences... [31.694s] Masking reference... [31.007s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.744s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.738s] Building query seed array... [2.231s] Computing hash join... [5.026s] Masking low complexity seeds... [0.229s] Searching alignments... [709.378s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.548s] Building query seed array... [2.571s] Computing hash join... [5.021s] Masking low complexity seeds... [0.238s] Searching alignments... [309.467s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.171s] Building query seed array... [2.787s] Computing hash join... [5.012s] Masking low complexity seeds... [0.235s] Searching alignments... [224.363s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.066s] Building query seed array... [2.198s] Computing hash join... [4.961s] Masking low complexity seeds... [0.222s] Searching alignments... [234.718s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.119s] Building query seed array... [2.05s] Computing hash join... [4.892s] Masking low complexity seeds... [0.222s] Searching alignments... [322.158s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.472s] Building query seed array... [2.328s] Computing hash join... [4.919s] Masking low complexity seeds... [0.224s] Searching alignments... [248.969s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.6s] Building query seed array... [2.439s] Computing hash join... [4.904s] Masking low complexity seeds... [0.23s] Searching alignments... [191.898s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.387s] Building query seed array... [2.035s] Computing hash join... [4.83s] Masking low complexity seeds... [0.21s] Searching alignments... [189.239s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.554s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [16.66s] Sorting trace points... [3.258s] Computing alignments... [81.892s] Deallocating buffers... [0.056s] Loading trace points... [0.084s] Sorting trace points... [2.967s] Computing alignments... [79.834s] Deallocating buffers... [0.061s] Loading trace points... [0.079s] Sorting trace points... [3.244s] Computing alignments... [80.85s] Deallocating buffers... [0.064s] Loading trace points... [0.066s] Sorting trace points... [3.038s] Computing alignments... [85.266s] Deallocating buffers... [0.059s] Loading trace points... [0.099s] Sorting trace points... [3.26s] Computing alignments... [80.788s] Deallocating buffers... [0.055s] Loading trace points... [0.033s] Sorting trace points... [3.167s] Computing alignments... [81.871s] Deallocating buffers... [0.055s] Loading trace points... [0.001s] Sorting trace points... [2.943s] Computing alignments... [82.273s] Deallocating buffers... [0.061s] Loading trace points... [0.109s] Sorting trace points... [2.438s] Computing alignments... [85.5s] Deallocating buffers... [0.062s] Loading trace points... [0.059s] Sorting trace points... [2.301s] Computing alignments... [82.351s] Deallocating buffers... [0.06s] Loading trace points... [0.077s] Sorting trace points... [2.348s] Computing alignments... [83.264s] Deallocating buffers... [0.06s] Loading trace points... [0.1s] Sorting trace points... [3.357s] Computing alignments... [83.323s] Deallocating buffers... [0.058s] Loading trace points... [0.001s] Sorting trace points... [2.966s] Computing alignments... [84.985s] Deallocating buffers... [0.066s] Loading trace points... [0.244s] Sorting trace points... [2.677s] Computing alignments... [82.362s] Deallocating buffers... [0.063s] Loading trace points... [0.043s] Sorting trace points... [3.23s] Computing alignments... [83.112s] Deallocating buffers... [0.056s] Loading trace points... [0.044s] Sorting trace points... [2.562s] Computing alignments... [83.876s] Deallocating buffers... [0.065s] Loading trace points... [0s] Sorting trace points... [3.094s] Computing alignments... [84.663s] Deallocating buffers... [0.065s] Loading trace points... [0s] [1391.84s] Deallocating reference... [0.065s] Loading reference sequences... [23.516s] Masking reference... [24.988s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.929s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.287s] Building query seed array... [2.261s] Computing hash join... [4.217s] Masking low complexity seeds... [0.222s] Searching alignments... [561.971s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.532s] Building query seed array... [2.533s] Computing hash join... [4.135s] Masking low complexity seeds... [0.227s] Searching alignments... [243.075s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.803s] Building query seed array... [2.656s] Computing hash join... [4.189s] Masking low complexity seeds... [0.225s] Searching alignments... [181.525s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.078s] Building query seed array... [2.186s] Computing hash join... [4.138s] Masking low complexity seeds... [0.228s] Searching alignments... [190.135s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.538s] Building query seed array... [2s] Computing hash join... [4.073s] Masking low complexity seeds... [0.202s] Searching alignments... [259.819s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.156s] Building query seed array... [2.28s] Computing hash join... [4s] Masking low complexity seeds... [0.21s] Searching alignments... [201.71s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.036s] Building query seed array... [2.46s] Computing hash join... [4.016s] Masking low complexity seeds... [0.203s] Searching alignments... [154.201s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.711s] Building query seed array... [2.055s] Computing hash join... [3.995s] Masking low complexity seeds... [0.209s] Searching alignments... [150.51s] Deallocating memory... [0s] Deallocating buffers... [0.106s] Clearing query masking... [1.49s] Opening temporary output file... [0.022s] Computing alignments... Loading trace points... [13.765s] Sorting trace points... [2.669s] Computing alignments... [62.056s] Deallocating buffers... [0.048s] Loading trace points... [0.043s] Sorting trace points... [2.007s] Computing alignments... [61.432s] Deallocating buffers... [0.045s] Loading trace points... [0.064s] Sorting trace points... [2.567s] Computing alignments... [61.864s] Deallocating buffers... [0.044s] Loading trace points... [0.056s] Sorting trace points... [2.279s] Computing alignments... [65.503s] Deallocating buffers... [0.041s] Loading trace points... [0.089s] Sorting trace points... [2.511s] Computing alignments... [61.759s] Deallocating buffers... [0.045s] Loading trace points... [0.076s] Sorting trace points... [2.214s] Computing alignments... [61.892s] Deallocating buffers... [0.044s] Loading trace points... [0.032s] Sorting trace points... [2.442s] Computing alignments... [63.165s] Deallocating buffers... [0.048s] Loading trace points... [0.002s] Sorting trace points... [1.938s] Computing alignments... [65.365s] Deallocating buffers... [0.039s] Loading trace points... [0.053s] Sorting trace points... [1.856s] Computing alignments... [62.238s] Deallocating buffers... [0.048s] Loading trace points... [0.163s] Sorting trace points... [1.965s] Computing alignments... [63.437s] Deallocating buffers... [0.05s] Loading trace points... [0.065s] Sorting trace points... [2.406s] Computing alignments... [64.265s] Deallocating buffers... [0.053s] Loading trace points... [0.001s] Sorting trace points... [2.815s] Computing alignments... [64.825s] Deallocating buffers... [0.053s] Loading trace points... [0.088s] Sorting trace points... [2.408s] Computing alignments... [62.825s] Deallocating buffers... [0.046s] Loading trace points... [0.085s] Sorting trace points... [1.906s] Computing alignments... [63.134s] Deallocating buffers... [0.05s] Loading trace points... [0.041s] Sorting trace points... [2.482s] Computing alignments... [64.13s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [2.267s] Computing alignments... [64.74s] Deallocating buffers... [0.054s] Loading trace points... [0s] [1064.88s] Deallocating reference... [0.058s] Loading reference sequences... [0.076s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [4004.53s] [4004.53s] Deallocating queries... [0.067s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.331s] [4.244s] Closing the database... [0s] Cleaning up... [0s] Total time = 62532s Reported 5027806305 pairwise alignments, 5027806305 HSPs. 5649168 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-08.trimmed.R1.fastq.gz complete: CH10-08.trimmed.R1.blastx.meganized.daa Now MEGANizing CH10-08.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH10-08.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (218.8s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.6s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8,780.1s) Total reads: 5,649,168 With hits: 5,649,168 Alignments: 3,871,579,545 Assig. Taxonomy: 3,325,505 Assig. SEED: 147,296 Assig. EGGNOG: 32,053 Assig. GTDB: 268,826 Assig. EC: 605,937 Assig. INTERPRO2GO: 1,526,738 MinSupport set to: 2824 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 6,657 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (18.4s) Min-supp. changes: 5,142 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.6s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 180 Class. SEED: 489 Class. EGGNOG: 1,711 Class. GTDB: 55 Class. EC: 2,425 Class. INTERPRO2GO: 8,814 Total time: 9,036s Peak memory: 49.8 of 195.3G MEGANization of CH10-08.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-08.trimmed.R2.fastq.gz... 1f8dd9c786f086e39b94c20086b02de5 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-08.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-08.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.296s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.712s] Opening the output file... [0s] Loading query sequences... [95.29s] Masking queries... [24.767s] Algorithm: Double-indexed Building query histograms... [19.583s] Loading reference sequences... [30.538s] Masking reference... [32.074s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.071s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.146s] Building query seed array... [2.326s] Computing hash join... [5.152s] Masking low complexity seeds... [0.227s] Searching alignments... [729.622s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.565s] Building query seed array... [2.583s] Computing hash join... [5.037s] Masking low complexity seeds... [0.22s] Searching alignments... [311.846s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.246s] Building query seed array... [2.68s] Computing hash join... [5.24s] Masking low complexity seeds... [0.269s] Searching alignments... [229.227s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.98s] Building query seed array... [2.174s] Computing hash join... [5.03s] Masking low complexity seeds... [0.229s] Searching alignments... [238.392s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.264s] Building query seed array... [2.035s] Computing hash join... [4.893s] Masking low complexity seeds... [0.218s] Searching alignments... [334.805s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.417s] Building query seed array... [2.31s] Computing hash join... [4.82s] Masking low complexity seeds... [0.218s] Searching alignments... [260.715s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.366s] Building query seed array... [2.459s] Computing hash join... [4.862s] Masking low complexity seeds... [0.219s] Searching alignments... [196.439s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.981s] Building query seed array... [2.069s] Computing hash join... [4.829s] Masking low complexity seeds... [0.214s] Searching alignments... [204.366s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.496s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.017s] Sorting trace points... [3.397s] Computing alignments... [83.81s] Deallocating buffers... [0.059s] Loading trace points... [0.073s] Sorting trace points... [2.52s] Computing alignments... [83.88s] Deallocating buffers... [0.057s] Loading trace points... [0.063s] Sorting trace points... [3.359s] Computing alignments... [83.263s] Deallocating buffers... [0.067s] Loading trace points... [0.093s] Sorting trace points... [3.145s] Computing alignments... [86.442s] Deallocating buffers... [0.067s] Loading trace points... [0.085s] Sorting trace points... [3.196s] Computing alignments... [82.842s] Deallocating buffers... [0.058s] Loading trace points... [0.052s] Sorting trace points... [3.321s] Computing alignments... [83.539s] Deallocating buffers... [0.068s] Loading trace points... [0.047s] Sorting trace points... [2.49s] Computing alignments... [83.977s] Deallocating buffers... [0.064s] Loading trace points... [0.089s] Sorting trace points... [3.412s] Computing alignments... [85.109s] Deallocating buffers... [0.069s] Loading trace points... [0.068s] Sorting trace points... [3.165s] Computing alignments... [82.858s] Deallocating buffers... [0.065s] Loading trace points... [0.064s] Sorting trace points... [3.263s] Computing alignments... [84.257s] Deallocating buffers... [0.067s] Loading trace points... [0.06s] Sorting trace points... [2.845s] Computing alignments... [84.546s] Deallocating buffers... [0.066s] Loading trace points... [0.067s] Sorting trace points... [3.276s] Computing alignments... [84.997s] Deallocating buffers... [0.068s] Loading trace points... [0.057s] Sorting trace points... [3.267s] Computing alignments... [83.593s] Deallocating buffers... [0.065s] Loading trace points... [0.059s] Sorting trace points... [3.295s] Computing alignments... [82.982s] Deallocating buffers... [0.057s] Loading trace points... [0.088s] Sorting trace points... [2.355s] Computing alignments... [84.461s] Deallocating buffers... [0.062s] Loading trace points... [0s] Sorting trace points... [2.441s] Computing alignments... [82.946s] Deallocating buffers... [0.065s] Loading trace points... [0s] [1411.39s] Deallocating reference... [0.073s] Loading reference sequences... [40.49s] Masking reference... [30.865s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.562s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.234s] Building query seed array... [2.32s] Computing hash join... [5.039s] Masking low complexity seeds... [0.225s] Searching alignments... [708.256s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.98s] Building query seed array... [2.55s] Computing hash join... [5.039s] Masking low complexity seeds... [0.229s] Searching alignments... [307.951s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.393s] Building query seed array... [2.641s] Computing hash join... [4.982s] Masking low complexity seeds... [0.23s] Searching alignments... [224.386s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.17s] Building query seed array... [2.208s] Computing hash join... [4.972s] Masking low complexity seeds... [0.228s] Searching alignments... [232.115s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.058s] Building query seed array... [2.035s] Computing hash join... [4.808s] Masking low complexity seeds... [0.224s] Searching alignments... [334.968s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.189s] Building query seed array... [2.301s] Computing hash join... [4.84s] Masking low complexity seeds... [0.206s] Searching alignments... [255.1s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.977s] Building query seed array... [2.433s] Computing hash join... [4.953s] Masking low complexity seeds... [0.215s] Searching alignments... [193.915s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.115s] Building query seed array... [2.039s] Computing hash join... [4.895s] Masking low complexity seeds... [0.215s] Searching alignments... [192.905s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.565s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [16.925s] Sorting trace points... [3.412s] Computing alignments... [80.877s] Deallocating buffers... [0.058s] Loading trace points... [0.064s] Sorting trace points... [3.278s] Computing alignments... [81.606s] Deallocating buffers... [0.067s] Loading trace points... [0.104s] Sorting trace points... [3.245s] Computing alignments... [80.989s] Deallocating buffers... [0.056s] Loading trace points... [0.051s] Sorting trace points... [3.211s] Computing alignments... [84.467s] Deallocating buffers... [0.06s] Loading trace points... [0.072s] Sorting trace points... [3.255s] Computing alignments... [80.464s] Deallocating buffers... [0.069s] Loading trace points... [0.045s] Sorting trace points... [3.331s] Computing alignments... [80.783s] Deallocating buffers... [0.054s] Loading trace points... [0.051s] Sorting trace points... [3.232s] Computing alignments... [81.81s] Deallocating buffers... [0.067s] Loading trace points... [0.068s] Sorting trace points... [3.43s] Computing alignments... [83.096s] Deallocating buffers... [0.068s] Loading trace points... [0.071s] Sorting trace points... [2.723s] Computing alignments... [80.716s] Deallocating buffers... [0.066s] Loading trace points... [0.043s] Sorting trace points... [3.247s] Computing alignments... [82.088s] Deallocating buffers... [0.057s] Loading trace points... [0.059s] Sorting trace points... [2.615s] Computing alignments... [81.941s] Deallocating buffers... [0.063s] Loading trace points... [0.098s] Sorting trace points... [3.342s] Computing alignments... [83.354s] Deallocating buffers... [0.07s] Loading trace points... [0.065s] Sorting trace points... [3.323s] Computing alignments... [81.261s] Deallocating buffers... [0.06s] Loading trace points... [0.083s] Sorting trace points... [3.159s] Computing alignments... [80.463s] Deallocating buffers... [0.066s] Loading trace points... [0.058s] Sorting trace points... [3.166s] Computing alignments... [81.653s] Deallocating buffers... [0.069s] Loading trace points... [0s] Sorting trace points... [2.407s] Computing alignments... [80.372s] Deallocating buffers... [0.061s] Loading trace points... [0s] [1375.28s] Deallocating reference... [0.072s] Loading reference sequences... [29.51s] Masking reference... [30.862s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.977s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.14s] Building query seed array... [2.3s] Computing hash join... [5.037s] Masking low complexity seeds... [0.233s] Searching alignments... [715.378s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.21s] Building query seed array... [2.642s] Computing hash join... [4.989s] Masking low complexity seeds... [0.23s] Searching alignments... [310.797s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.531s] Building query seed array... [2.601s] Computing hash join... [5.052s] Masking low complexity seeds... [0.225s] Searching alignments... [229.108s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.99s] Building query seed array... [2.252s] Computing hash join... [4.936s] Masking low complexity seeds... [0.224s] Searching alignments... [232.19s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.922s] Building query seed array... [1.988s] Computing hash join... [4.778s] Masking low complexity seeds... [0.213s] Searching alignments... [343.401s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.253s] Building query seed array... [2.314s] Computing hash join... [4.812s] Masking low complexity seeds... [0.215s] Searching alignments... [257.607s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.25s] Building query seed array... [2.464s] Computing hash join... [4.943s] Masking low complexity seeds... [0.216s] Searching alignments... [194.495s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.935s] Building query seed array... [2.053s] Computing hash join... [4.852s] Masking low complexity seeds... [0.216s] Searching alignments... [197.522s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.528s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.839s] Sorting trace points... [3.382s] Computing alignments... [77.518s] Deallocating buffers... [0.068s] Loading trace points... [0.055s] Sorting trace points... [2.785s] Computing alignments... [78.112s] Deallocating buffers... [0.052s] Loading trace points... [0.051s] Sorting trace points... [3.217s] Computing alignments... [77.399s] Deallocating buffers... [0.066s] Loading trace points... [0.055s] Sorting trace points... [3.115s] Computing alignments... [80.656s] Deallocating buffers... [0.063s] Loading trace points... [0.11s] Sorting trace points... [2.889s] Computing alignments... [76.716s] Deallocating buffers... [0.058s] Loading trace points... [0.066s] Sorting trace points... [2.373s] Computing alignments... [77.334s] Deallocating buffers... [0.056s] Loading trace points... [0.108s] Sorting trace points... [3.13s] Computing alignments... [77.874s] Deallocating buffers... [0.052s] Loading trace points... [0.06s] Sorting trace points... [3.189s] Computing alignments... [79.325s] Deallocating buffers... [0.059s] Loading trace points... [0.07s] Sorting trace points... [2.832s] Computing alignments... [77.433s] Deallocating buffers... [0.058s] Loading trace points... [0.113s] Sorting trace points... [2.382s] Computing alignments... [78.345s] Deallocating buffers... [0.063s] Loading trace points... [0.043s] Sorting trace points... [2.843s] Computing alignments... [78.714s] Deallocating buffers... [0.061s] Loading trace points... [0.058s] Sorting trace points... [2.388s] Computing alignments... [79.437s] Deallocating buffers... [0.062s] Loading trace points... [0.119s] Sorting trace points... [2.978s] Computing alignments... [77.433s] Deallocating buffers... [0.058s] Loading trace points... [0.605s] Sorting trace points... [2.901s] Computing alignments... [76.684s] Deallocating buffers... [0.058s] Loading trace points... [0.069s] Sorting trace points... [3.281s] Computing alignments... [78.095s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [3.176s] Computing alignments... [77s] Deallocating buffers... [0.056s] Loading trace points... [0s] [1314.42s] Deallocating reference... [0.072s] Loading reference sequences... [29.691s] Masking reference... [30.859s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.958s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.28s] Building query seed array... [2.312s] Computing hash join... [5.125s] Masking low complexity seeds... [0.228s] Searching alignments... [719.482s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.558s] Building query seed array... [2.565s] Computing hash join... [5.089s] Masking low complexity seeds... [0.238s] Searching alignments... [307.373s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.986s] Building query seed array... [2.629s] Computing hash join... [5.102s] Masking low complexity seeds... [0.225s] Searching alignments... [230.121s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.137s] Building query seed array... [2.232s] Computing hash join... [4.943s] Masking low complexity seeds... [0.232s] Searching alignments... [236.332s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.248s] Building query seed array... [2.086s] Computing hash join... [4.953s] Masking low complexity seeds... [0.216s] Searching alignments... [344.727s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.102s] Building query seed array... [2.286s] Computing hash join... [4.852s] Masking low complexity seeds... [0.216s] Searching alignments... [254.057s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.905s] Building query seed array... [2.533s] Computing hash join... [4.852s] Masking low complexity seeds... [0.217s] Searching alignments... [195.126s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.002s] Building query seed array... [2.047s] Computing hash join... [4.868s] Masking low complexity seeds... [0.214s] Searching alignments... [198.235s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.535s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.348s] Sorting trace points... [2.481s] Computing alignments... [80.275s] Deallocating buffers... [0.059s] Loading trace points... [0.072s] Sorting trace points... [3.33s] Computing alignments... [81.442s] Deallocating buffers... [0.058s] Loading trace points... [0.076s] Sorting trace points... [3.351s] Computing alignments... [80.6s] Deallocating buffers... [0.057s] Loading trace points... [0.063s] Sorting trace points... [3.239s] Computing alignments... [83.663s] Deallocating buffers... [0.067s] Loading trace points... [0.061s] Sorting trace points... [3.219s] Computing alignments... [79.972s] Deallocating buffers... [0.067s] Loading trace points... [0.103s] Sorting trace points... [3.129s] Computing alignments... [80.284s] Deallocating buffers... [0.066s] Loading trace points... [0.064s] Sorting trace points... [3.233s] Computing alignments... [81.597s] Deallocating buffers... [0.058s] Loading trace points... [0.088s] Sorting trace points... [3.236s] Computing alignments... [82.483s] Deallocating buffers... [0.066s] Loading trace points... [0.072s] Sorting trace points... [2.506s] Computing alignments... [79.963s] Deallocating buffers... [0.056s] Loading trace points... [0.295s] Sorting trace points... [2.812s] Computing alignments... [81.364s] Deallocating buffers... [0.059s] Loading trace points... [0.075s] Sorting trace points... [2.568s] Computing alignments... [81.51s] Deallocating buffers... [0.063s] Loading trace points... [0.085s] Sorting trace points... [3.361s] Computing alignments... [82.466s] Deallocating buffers... [0.058s] Loading trace points... [0.093s] Sorting trace points... [3.193s] Computing alignments... [80.667s] Deallocating buffers... [0.062s] Loading trace points... [0.047s] Sorting trace points... [3.305s] Computing alignments... [79.998s] Deallocating buffers... [0.042s] Loading trace points... [0.11s] Sorting trace points... [2.841s] Computing alignments... [81.309s] Deallocating buffers... [0.065s] Loading trace points... [0s] Sorting trace points... [3.245s] Computing alignments... [80.478s] Deallocating buffers... [0.066s] Loading trace points... [0s] [1366.88s] Deallocating reference... [0.072s] Loading reference sequences... [261.518s] Masking reference... [30.969s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.673s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.222s] Building query seed array... [2.251s] Computing hash join... [5.098s] Masking low complexity seeds... [0.227s] Searching alignments... [718.961s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.474s] Building query seed array... [2.603s] Computing hash join... [4.986s] Masking low complexity seeds... [0.234s] Searching alignments... [305.04s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.31s] Building query seed array... [2.606s] Computing hash join... [5.037s] Masking low complexity seeds... [0.228s] Searching alignments... [226.079s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.03s] Building query seed array... [2.138s] Computing hash join... [5.019s] Masking low complexity seeds... [0.229s] Searching alignments... [238.454s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.881s] Building query seed array... [2.018s] Computing hash join... [4.857s] Masking low complexity seeds... [0.221s] Searching alignments... [333.859s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.282s] Building query seed array... [2.269s] Computing hash join... [4.899s] Masking low complexity seeds... [0.217s] Searching alignments... [261.65s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.895s] Building query seed array... [2.535s] Computing hash join... [4.906s] Masking low complexity seeds... [0.214s] Searching alignments... [194.231s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.77s] Building query seed array... [2.046s] Computing hash join... [4.914s] Masking low complexity seeds... [0.22s] Searching alignments... [196.326s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.509s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.964s] Sorting trace points... [3.341s] Computing alignments... [81.6s] Deallocating buffers... [0.056s] Loading trace points... [0.098s] Sorting trace points... [3.228s] Computing alignments... [82.787s] Deallocating buffers... [0.057s] Loading trace points... [0.094s] Sorting trace points... [2.533s] Computing alignments... [82.013s] Deallocating buffers... [0.063s] Loading trace points... [0.06s] Sorting trace points... [3.343s] Computing alignments... [84.873s] Deallocating buffers... [0.061s] Loading trace points... [0.059s] Sorting trace points... [3.057s] Computing alignments... [81.302s] Deallocating buffers... [0.06s] Loading trace points... [0.073s] Sorting trace points... [2.908s] Computing alignments... [81.683s] Deallocating buffers... [0.059s] Loading trace points... [0.093s] Sorting trace points... [3.327s] Computing alignments... [81.864s] Deallocating buffers... [0.06s] Loading trace points... [0.062s] Sorting trace points... [2.46s] Computing alignments... [83.406s] Deallocating buffers... [0.065s] Loading trace points... [0.069s] Sorting trace points... [2.968s] Computing alignments... [80.847s] Deallocating buffers... [0.056s] Loading trace points... [0.059s] Sorting trace points... [2.907s] Computing alignments... [82.28s] Deallocating buffers... [0.06s] Loading trace points... [0.08s] Sorting trace points... [2.68s] Computing alignments... [82.649s] Deallocating buffers... [0.065s] Loading trace points... [0.098s] Sorting trace points... [3.163s] Computing alignments... [83.512s] Deallocating buffers... [0.071s] Loading trace points... [0.099s] Sorting trace points... [3.244s] Computing alignments... [81.519s] Deallocating buffers... [0.068s] Loading trace points... [0.054s] Sorting trace points... [3.278s] Computing alignments... [81.014s] Deallocating buffers... [0.055s] Loading trace points... [0.086s] Sorting trace points... [2.868s] Computing alignments... [82.157s] Deallocating buffers... [0.059s] Loading trace points... [0s] Sorting trace points... [3.045s] Computing alignments... [80.962s] Deallocating buffers... [0.06s] Loading trace points... [0s] [1381.96s] Deallocating reference... [0.073s] Loading reference sequences... [237.804s] Masking reference... [31.314s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.282s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.375s] Building query seed array... [2.282s] Computing hash join... [5.077s] Masking low complexity seeds... [0.229s] Searching alignments... [716.777s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.158s] Building query seed array... [2.586s] Computing hash join... [4.978s] Masking low complexity seeds... [0.235s] Searching alignments... [307.639s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.107s] Building query seed array... [2.656s] Computing hash join... [4.998s] Masking low complexity seeds... [0.23s] Searching alignments... [228.371s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.274s] Building query seed array... [2.206s] Computing hash join... [4.953s] Masking low complexity seeds... [0.229s] Searching alignments... [232.851s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.811s] Building query seed array... [1.99s] Computing hash join... [4.964s] Masking low complexity seeds... [0.222s] Searching alignments... [338.804s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.405s] Building query seed array... [2.358s] Computing hash join... [4.901s] Masking low complexity seeds... [0.216s] Searching alignments... [260.716s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.478s] Building query seed array... [2.389s] Computing hash join... [4.86s] Masking low complexity seeds... [0.212s] Searching alignments... [192.574s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.155s] Building query seed array... [2.068s] Computing hash join... [4.92s] Masking low complexity seeds... [0.206s] Searching alignments... [195.906s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.497s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.911s] Sorting trace points... [3.368s] Computing alignments... [81.787s] Deallocating buffers... [0.049s] Loading trace points... [0.071s] Sorting trace points... [2.364s] Computing alignments... [82.794s] Deallocating buffers... [0.062s] Loading trace points... [0.115s] Sorting trace points... [3.265s] Computing alignments... [81.914s] Deallocating buffers... [0.059s] Loading trace points... [0.077s] Sorting trace points... [3.233s] Computing alignments... [84.382s] Deallocating buffers... [0.057s] Loading trace points... [0.067s] Sorting trace points... [2.531s] Computing alignments... [81.463s] Deallocating buffers... [0.06s] Loading trace points... [0.077s] Sorting trace points... [2.335s] Computing alignments... [81.571s] Deallocating buffers... [0.059s] Loading trace points... [0.072s] Sorting trace points... [2.845s] Computing alignments... [82.362s] Deallocating buffers... [0.049s] Loading trace points... [0.07s] Sorting trace points... [3.284s] Computing alignments... [84.012s] Deallocating buffers... [0.058s] Loading trace points... [0.091s] Sorting trace points... [2.943s] Computing alignments... [80.979s] Deallocating buffers... [0.056s] Loading trace points... [0.041s] Sorting trace points... [3.262s] Computing alignments... [82.129s] Deallocating buffers... [0.057s] Loading trace points... [0.053s] Sorting trace points... [3.242s] Computing alignments... [82.777s] Deallocating buffers... [0.066s] Loading trace points... [0.102s] Sorting trace points... [3.223s] Computing alignments... [83.479s] Deallocating buffers... [0.059s] Loading trace points... [0.032s] Sorting trace points... [3.305s] Computing alignments... [81.521s] Deallocating buffers... [0.056s] Loading trace points... [0.068s] Sorting trace points... [2.328s] Computing alignments... [81.354s] Deallocating buffers... [0.063s] Loading trace points... [0.092s] Sorting trace points... [3.233s] Computing alignments... [82.532s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [3.173s] Computing alignments... [81.556s] Deallocating buffers... [0.056s] Loading trace points... [0s] [1383.51s] Deallocating reference... [0.072s] Loading reference sequences... [29.757s] Masking reference... [30.866s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.296s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.519s] Building query seed array... [2.256s] Computing hash join... [4.988s] Masking low complexity seeds... [0.226s] Searching alignments... [719.179s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.437s] Building query seed array... [2.567s] Computing hash join... [5.006s] Masking low complexity seeds... [0.224s] Searching alignments... [305.071s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.736s] Building query seed array... [2.661s] Computing hash join... [5.001s] Masking low complexity seeds... [0.223s] Searching alignments... [225.098s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.107s] Building query seed array... [2.213s] Computing hash join... [5.021s] Masking low complexity seeds... [0.229s] Searching alignments... [236.636s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.167s] Building query seed array... [2.061s] Computing hash join... [4.858s] Masking low complexity seeds... [0.22s] Searching alignments... [343.327s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.975s] Building query seed array... [2.329s] Computing hash join... [4.821s] Masking low complexity seeds... [0.211s] Searching alignments... [261.544s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.253s] Building query seed array... [2.443s] Computing hash join... [4.962s] Masking low complexity seeds... [0.224s] Searching alignments... [197.502s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.933s] Building query seed array... [2.052s] Computing hash join... [4.909s] Masking low complexity seeds... [0.21s] Searching alignments... [198.786s] Deallocating memory... [0s] Deallocating buffers... [0.138s] Clearing query masking... [1.591s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.83s] Sorting trace points... [3.361s] Computing alignments... [82.526s] Deallocating buffers... [0.063s] Loading trace points... [0.09s] Sorting trace points... [2.413s] Computing alignments... [83.575s] Deallocating buffers... [0.057s] Loading trace points... [0.071s] Sorting trace points... [3.445s] Computing alignments... [82.755s] Deallocating buffers... [0.057s] Loading trace points... [0.063s] Sorting trace points... [3.446s] Computing alignments... [85.047s] Deallocating buffers... [0.057s] Loading trace points... [0.096s] Sorting trace points... [3.2s] Computing alignments... [82.158s] Deallocating buffers... [0.064s] Loading trace points... [0.063s] Sorting trace points... [2.991s] Computing alignments... [82.557s] Deallocating buffers... [0.051s] Loading trace points... [0.803s] Sorting trace points... [2.416s] Computing alignments... [83.063s] Deallocating buffers... [0.059s] Loading trace points... [0.092s] Sorting trace points... [3.313s] Computing alignments... [84.595s] Deallocating buffers... [0.059s] Loading trace points... [0.078s] Sorting trace points... [2.373s] Computing alignments... [81.549s] Deallocating buffers... [0.06s] Loading trace points... [0.075s] Sorting trace points... [3.072s] Computing alignments... [82.791s] Deallocating buffers... [0.067s] Loading trace points... [0.057s] Sorting trace points... [2.408s] Computing alignments... [83.671s] Deallocating buffers... [0.06s] Loading trace points... [0.089s] Sorting trace points... [2.947s] Computing alignments... [84.371s] Deallocating buffers... [0.051s] Loading trace points... [0.035s] Sorting trace points... [3.285s] Computing alignments... [82.588s] Deallocating buffers... [0.051s] Loading trace points... [0.11s] Sorting trace points... [2.961s] Computing alignments... [82.041s] Deallocating buffers... [0.064s] Loading trace points... [0.088s] Sorting trace points... [2.776s] Computing alignments... [82.925s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [2.363s] Computing alignments... [82.285s] Deallocating buffers... [0.06s] Loading trace points... [0s] [1394.98s] Deallocating reference... [0.076s] Loading reference sequences... [33.895s] Masking reference... [31.152s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.859s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.143s] Building query seed array... [2.329s] Computing hash join... [5.079s] Masking low complexity seeds... [0.23s] Searching alignments... [714.8s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.31s] Building query seed array... [2.537s] Computing hash join... [5.062s] Masking low complexity seeds... [0.23s] Searching alignments... [303.45s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.44s] Building query seed array... [2.577s] Computing hash join... [4.987s] Masking low complexity seeds... [0.232s] Searching alignments... [226.881s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.31s] Building query seed array... [2.194s] Computing hash join... [5.065s] Masking low complexity seeds... [0.229s] Searching alignments... [238.088s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.06s] Building query seed array... [2.031s] Computing hash join... [4.885s] Masking low complexity seeds... [0.214s] Searching alignments... [339.236s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.734s] Building query seed array... [2.33s] Computing hash join... [4.939s] Masking low complexity seeds... [0.223s] Searching alignments... [259.613s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.355s] Building query seed array... [2.444s] Computing hash join... [4.87s] Masking low complexity seeds... [0.217s] Searching alignments... [193.129s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.956s] Building query seed array... [2.09s] Computing hash join... [4.83s] Masking low complexity seeds... [0.222s] Searching alignments... [196.942s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.489s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.402s] Sorting trace points... [3.202s] Computing alignments... [79.08s] Deallocating buffers... [0.065s] Loading trace points... [0.037s] Sorting trace points... [3.215s] Computing alignments... [79.881s] Deallocating buffers... [0.064s] Loading trace points... [0.078s] Sorting trace points... [2.693s] Computing alignments... [79.112s] Deallocating buffers... [0.063s] Loading trace points... [0.076s] Sorting trace points... [3.063s] Computing alignments... [82.143s] Deallocating buffers... [0.062s] Loading trace points... [0.066s] Sorting trace points... [3.273s] Computing alignments... [78.627s] Deallocating buffers... [0.065s] Loading trace points... [0.072s] Sorting trace points... [2.396s] Computing alignments... [78.983s] Deallocating buffers... [0.062s] Loading trace points... [0.058s] Sorting trace points... [3.213s] Computing alignments... [79.463s] Deallocating buffers... [0.056s] Loading trace points... [0.081s] Sorting trace points... [3.253s] Computing alignments... [80.929s] Deallocating buffers... [0.054s] Loading trace points... [0.071s] Sorting trace points... [2.333s] Computing alignments... [78.441s] Deallocating buffers... [0.059s] Loading trace points... [0.117s] Sorting trace points... [2.543s] Computing alignments... [79.834s] Deallocating buffers... [0.06s] Loading trace points... [0.002s] Sorting trace points... [3.189s] Computing alignments... [79.949s] Deallocating buffers... [0.058s] Loading trace points... [0.065s] Sorting trace points... [2.92s] Computing alignments... [80.928s] Deallocating buffers... [0.065s] Loading trace points... [0.086s] Sorting trace points... [2.454s] Computing alignments... [79.141s] Deallocating buffers... [0.06s] Loading trace points... [0.067s] Sorting trace points... [2.765s] Computing alignments... [78.341s] Deallocating buffers... [0.059s] Loading trace points... [0.107s] Sorting trace points... [3.314s] Computing alignments... [79.7s] Deallocating buffers... [0.065s] Loading trace points... [0s] Sorting trace points... [2.917s] Computing alignments... [78.38s] Deallocating buffers... [0.057s] Loading trace points... [0s] [1339.13s] Deallocating reference... [0.074s] Loading reference sequences... [29.564s] Masking reference... [32.073s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [33.599s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.693s] Building query seed array... [2.302s] Computing hash join... [5.054s] Masking low complexity seeds... [0.234s] Searching alignments... [725.843s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.583s] Building query seed array... [2.586s] Computing hash join... [5.006s] Masking low complexity seeds... [0.237s] Searching alignments... [309.728s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.43s] Building query seed array... [2.697s] Computing hash join... [5.05s] Masking low complexity seeds... [0.23s] Searching alignments... [232.228s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.461s] Building query seed array... [2.214s] Computing hash join... [4.984s] Masking low complexity seeds... [0.234s] Searching alignments... [231.957s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.776s] Building query seed array... [2.038s] Computing hash join... [4.963s] Masking low complexity seeds... [0.211s] Searching alignments... [341.652s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.128s] Building query seed array... [2.279s] Computing hash join... [4.829s] Masking low complexity seeds... [0.211s] Searching alignments... [258.302s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.346s] Building query seed array... [2.519s] Computing hash join... [4.903s] Masking low complexity seeds... [0.218s] Searching alignments... [195.751s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.996s] Building query seed array... [2.061s] Computing hash join... [4.843s] Masking low complexity seeds... [0.207s] Searching alignments... [201.141s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.543s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.903s] Sorting trace points... [3.318s] Computing alignments... [78.851s] Deallocating buffers... [0.058s] Loading trace points... [0.057s] Sorting trace points... [3.021s] Computing alignments... [79.59s] Deallocating buffers... [0.065s] Loading trace points... [0.072s] Sorting trace points... [3.161s] Computing alignments... [78.718s] Deallocating buffers... [0.067s] Loading trace points... [0.044s] Sorting trace points... [2.703s] Computing alignments... [81.898s] Deallocating buffers... [0.066s] Loading trace points... [0.002s] Sorting trace points... [2.883s] Computing alignments... [78.46s] Deallocating buffers... [0.066s] Loading trace points... [0.333s] Sorting trace points... [3.136s] Computing alignments... [78.711s] Deallocating buffers... [0.051s] Loading trace points... [0.062s] Sorting trace points... [3.274s] Computing alignments... [79.175s] Deallocating buffers... [0.059s] Loading trace points... [0.082s] Sorting trace points... [2.67s] Computing alignments... [80.388s] Deallocating buffers... [0.065s] Loading trace points... [0.058s] Sorting trace points... [2.401s] Computing alignments... [78.211s] Deallocating buffers... [0.062s] Loading trace points... [0.067s] Sorting trace points... [3.155s] Computing alignments... [79.526s] Deallocating buffers... [0.057s] Loading trace points... [0.052s] Sorting trace points... [2.472s] Computing alignments... [79.516s] Deallocating buffers... [0.049s] Loading trace points... [0.121s] Sorting trace points... [2.871s] Computing alignments... [80.381s] Deallocating buffers... [0.054s] Loading trace points... [0.054s] Sorting trace points... [3.251s] Computing alignments... [78.582s] Deallocating buffers... [0.062s] Loading trace points... [0.071s] Sorting trace points... [3.329s] Computing alignments... [77.899s] Deallocating buffers... [0.055s] Loading trace points... [0.001s] Sorting trace points... [3.294s] Computing alignments... [78.971s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [3.153s] Computing alignments... [78.293s] Deallocating buffers... [0.057s] Loading trace points... [0s] [1334.27s] Deallocating reference... [0.073s] Loading reference sequences... [29.536s] Masking reference... [32.103s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.763s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.326s] Building query seed array... [2.233s] Computing hash join... [5.095s] Masking low complexity seeds... [0.228s] Searching alignments... [717.655s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.77s] Building query seed array... [2.508s] Computing hash join... [5.049s] Masking low complexity seeds... [0.234s] Searching alignments... [305.385s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.926s] Building query seed array... [2.659s] Computing hash join... [4.916s] Masking low complexity seeds... [0.232s] Searching alignments... [224.999s] Deallocating memory... [0.003s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.773s] Building query seed array... [2.221s] Computing hash join... [5.007s] Masking low complexity seeds... [0.228s] Searching alignments... [235.684s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.985s] Building query seed array... [2.027s] Computing hash join... [4.868s] Masking low complexity seeds... [0.219s] Searching alignments... [341.652s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.943s] Building query seed array... [2.293s] Computing hash join... [4.909s] Masking low complexity seeds... [0.219s] Searching alignments... [253.759s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.474s] Building query seed array... [2.439s] Computing hash join... [4.952s] Masking low complexity seeds... [0.212s] Searching alignments... [193.472s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.738s] Building query seed array... [2.012s] Computing hash join... [4.855s] Masking low complexity seeds... [0.208s] Searching alignments... [195.233s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [1.572s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [17.122s] Sorting trace points... [3.408s] Computing alignments... [76.76s] Deallocating buffers... [0.054s] Loading trace points... [0.077s] Sorting trace points... [2.668s] Computing alignments... [77.411s] Deallocating buffers... [0.059s] Loading trace points... [0.072s] Sorting trace points... [2.516s] Computing alignments... [77.031s] Deallocating buffers... [0.06s] Loading trace points... [0.102s] Sorting trace points... [3.353s] Computing alignments... [80.066s] Deallocating buffers... [0.059s] Loading trace points... [0.955s] Sorting trace points... [3.306s] Computing alignments... [76.321s] Deallocating buffers... [0.056s] Loading trace points... [0.167s] Sorting trace points... [3.293s] Computing alignments... [76.465s] Deallocating buffers... [0.064s] Loading trace points... [0.043s] Sorting trace points... [3.295s] Computing alignments... [77.079s] Deallocating buffers... [0.051s] Loading trace points... [0.473s] Sorting trace points... [3.321s] Computing alignments... [78.432s] Deallocating buffers... [0.058s] Loading trace points... [0.108s] Sorting trace points... [3.292s] Computing alignments... [76.12s] Deallocating buffers... [0.066s] Loading trace points... [0.057s] Sorting trace points... [3.223s] Computing alignments... [77.332s] Deallocating buffers... [0.057s] Loading trace points... [0.071s] Sorting trace points... [2.669s] Computing alignments... [77.425s] Deallocating buffers... [0.057s] Loading trace points... [0.066s] Sorting trace points... [3.223s] Computing alignments... [78.558s] Deallocating buffers... [0.058s] Loading trace points... [0.001s] Sorting trace points... [3.244s] Computing alignments... [76.429s] Deallocating buffers... [0.056s] Loading trace points... [0.074s] Sorting trace points... [3.333s] Computing alignments... [75.794s] Deallocating buffers... [0.056s] Loading trace points... [0.068s] Sorting trace points... [2.871s] Computing alignments... [76.672s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [3.161s] Computing alignments... [75.82s] Deallocating buffers... [0.059s] Loading trace points... [0s] [1304.39s] Deallocating reference... [0.073s] Loading reference sequences... [29.504s] Masking reference... [32.158s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [33.077s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.171s] Building query seed array... [2.267s] Computing hash join... [5.056s] Masking low complexity seeds... [0.227s] Searching alignments... [719.516s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.343s] Building query seed array... [2.579s] Computing hash join... [5.083s] Masking low complexity seeds... [0.235s] Searching alignments... [308.135s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.233s] Building query seed array... [2.568s] Computing hash join... [4.961s] Masking low complexity seeds... [0.226s] Searching alignments... [226.295s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.015s] Building query seed array... [2.166s] Computing hash join... [4.94s] Masking low complexity seeds... [0.227s] Searching alignments... [233.099s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.149s] Building query seed array... [2.049s] Computing hash join... [4.868s] Masking low complexity seeds... [0.222s] Searching alignments... [338.337s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.149s] Building query seed array... [2.283s] Computing hash join... [4.888s] Masking low complexity seeds... [0.214s] Searching alignments... [254.231s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.225s] Building query seed array... [2.434s] Computing hash join... [4.85s] Masking low complexity seeds... [0.225s] Searching alignments... [196.82s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.68s] Building query seed array... [2.076s] Computing hash join... [4.761s] Masking low complexity seeds... [0.225s] Searching alignments... [193.953s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.573s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.061s] Sorting trace points... [3.314s] Computing alignments... [88.376s] Deallocating buffers... [0.051s] Loading trace points... [0.073s] Sorting trace points... [3.072s] Computing alignments... [89.201s] Deallocating buffers... [0.042s] Loading trace points... [0.065s] Sorting trace points... [2.545s] Computing alignments... [89.244s] Deallocating buffers... [0.062s] Loading trace points... [0.059s] Sorting trace points... [3.164s] Computing alignments... [92.878s] Deallocating buffers... [0.061s] Loading trace points... [0.068s] Sorting trace points... [3.258s] Computing alignments... [88.912s] Deallocating buffers... [0.058s] Loading trace points... [0.055s] Sorting trace points... [2.677s] Computing alignments... [88.636s] Deallocating buffers... [0.065s] Loading trace points... [0.071s] Sorting trace points... [2.79s] Computing alignments... [88.58s] Deallocating buffers... [0.065s] Loading trace points... [0.062s] Sorting trace points... [3.1s] Computing alignments... [91.777s] Deallocating buffers... [0.068s] Loading trace points... [0.002s] Sorting trace points... [2.597s] Computing alignments... [87.713s] Deallocating buffers... [0.058s] Loading trace points... [0.062s] Sorting trace points... [2.84s] Computing alignments... [88.765s] Deallocating buffers... [0.06s] Loading trace points... [0.093s] Sorting trace points... [3.281s] Computing alignments... [90.138s] Deallocating buffers... [0.066s] Loading trace points... [0.058s] Sorting trace points... [2.994s] Computing alignments... [89.406s] Deallocating buffers... [0.067s] Loading trace points... [0.071s] Sorting trace points... [2.324s] Computing alignments... [89.4s] Deallocating buffers... [0.061s] Loading trace points... [0.06s] Sorting trace points... [2.488s] Computing alignments... [88.213s] Deallocating buffers... [0.065s] Loading trace points... [0.075s] Sorting trace points... [3.16s] Computing alignments... [89.266s] Deallocating buffers... [0.066s] Loading trace points... [0s] Sorting trace points... [2.867s] Computing alignments... [86.953s] Deallocating buffers... [0.052s] Loading trace points... [0s] [1492.93s] Deallocating reference... [0.062s] Loading reference sequences... [239.348s] Masking reference... [30.924s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.279s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.371s] Building query seed array... [2.255s] Computing hash join... [5.03s] Masking low complexity seeds... [0.227s] Searching alignments... [718.93s] Deallocating memory... [0.002s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.397s] Building query seed array... [2.65s] Computing hash join... [5.19s] Masking low complexity seeds... [0.24s] Searching alignments... [310.764s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.659s] Building query seed array... [2.761s] Computing hash join... [5.106s] Masking low complexity seeds... [0.228s] Searching alignments... [229.653s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.344s] Building query seed array... [2.159s] Computing hash join... [5.008s] Masking low complexity seeds... [0.23s] Searching alignments... [238.121s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.867s] Building query seed array... [1.989s] Computing hash join... [4.841s] Masking low complexity seeds... [0.216s] Searching alignments... [339.551s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.467s] Building query seed array... [2.334s] Computing hash join... [4.942s] Masking low complexity seeds... [0.209s] Searching alignments... [257.705s] Deallocating memory... [0.003s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.059s] Building query seed array... [2.387s] Computing hash join... [4.916s] Masking low complexity seeds... [0.215s] Searching alignments... [193.836s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.049s] Building query seed array... [2.078s] Computing hash join... [4.955s] Masking low complexity seeds... [0.215s] Searching alignments... [204.534s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.439s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.169s] Sorting trace points... [2.889s] Computing alignments... [79.332s] Deallocating buffers... [0.049s] Loading trace points... [0.073s] Sorting trace points... [3.195s] Computing alignments... [80.036s] Deallocating buffers... [0.057s] Loading trace points... [0.086s] Sorting trace points... [3.302s] Computing alignments... [79.294s] Deallocating buffers... [0.061s] Loading trace points... [0.077s] Sorting trace points... [3.325s] Computing alignments... [82.217s] Deallocating buffers... [0.059s] Loading trace points... [0.072s] Sorting trace points... [2.942s] Computing alignments... [78.638s] Deallocating buffers... [0.064s] Loading trace points... [0.04s] Sorting trace points... [2.352s] Computing alignments... [79.182s] Deallocating buffers... [0.066s] Loading trace points... [0.353s] Sorting trace points... [2.364s] Computing alignments... [79.737s] Deallocating buffers... [0.061s] Loading trace points... [0.082s] Sorting trace points... [2.45s] Computing alignments... [81.267s] Deallocating buffers... [0.066s] Loading trace points... [0.064s] Sorting trace points... [3.179s] Computing alignments... [78.89s] Deallocating buffers... [0.05s] Loading trace points... [0.055s] Sorting trace points... [3.273s] Computing alignments... [80.155s] Deallocating buffers... [0.067s] Loading trace points... [0.133s] Sorting trace points... [2.321s] Computing alignments... [79.936s] Deallocating buffers... [0.067s] Loading trace points... [0.074s] Sorting trace points... [3.527s] Computing alignments... [81.118s] Deallocating buffers... [0.052s] Loading trace points... [0.047s] Sorting trace points... [3.279s] Computing alignments... [79.258s] Deallocating buffers... [0.047s] Loading trace points... [0.082s] Sorting trace points... [2.436s] Computing alignments... [78.453s] Deallocating buffers... [0.06s] Loading trace points... [0.078s] Sorting trace points... [3.257s] Computing alignments... [79.231s] Deallocating buffers... [0.058s] Loading trace points... [0s] Sorting trace points... [2.514s] Computing alignments... [78.714s] Deallocating buffers... [0.06s] Loading trace points... [0s] [1341.66s] Deallocating reference... [0.07s] Loading reference sequences... [29.607s] Masking reference... [30.853s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.011s] Building reference histograms... [33.543s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.161s] Building query seed array... [2.27s] Computing hash join... [5.049s] Masking low complexity seeds... [0.222s] Searching alignments... [717.867s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.647s] Building query seed array... [2.613s] Computing hash join... [5.084s] Masking low complexity seeds... [0.233s] Searching alignments... [308.479s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.103s] Building query seed array... [2.672s] Computing hash join... [5.109s] Masking low complexity seeds... [0.233s] Searching alignments... [227.94s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.225s] Building query seed array... [2.242s] Computing hash join... [4.936s] Masking low complexity seeds... [0.226s] Searching alignments... [235.355s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.065s] Building query seed array... [2.034s] Computing hash join... [4.888s] Masking low complexity seeds... [0.211s] Searching alignments... [334.25s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.383s] Building query seed array... [2.398s] Computing hash join... [4.899s] Masking low complexity seeds... [0.215s] Searching alignments... [253.713s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.319s] Building query seed array... [2.42s] Computing hash join... [4.916s] Masking low complexity seeds... [0.215s] Searching alignments... [194.273s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.706s] Building query seed array... [2.073s] Computing hash join... [4.802s] Masking low complexity seeds... [0.215s] Searching alignments... [193.838s] Deallocating memory... [0s] Deallocating buffers... [0.132s] Clearing query masking... [1.551s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.875s] Sorting trace points... [3.305s] Computing alignments... [83.164s] Deallocating buffers... [0.057s] Loading trace points... [0.077s] Sorting trace points... [3.358s] Computing alignments... [83.519s] Deallocating buffers... [0.066s] Loading trace points... [0.074s] Sorting trace points... [3.207s] Computing alignments... [83.22s] Deallocating buffers... [0.056s] Loading trace points... [0.001s] Sorting trace points... [3.097s] Computing alignments... [86.238s] Deallocating buffers... [0.062s] Loading trace points... [0.074s] Sorting trace points... [2.814s] Computing alignments... [82.369s] Deallocating buffers... [0.043s] Loading trace points... [0.045s] Sorting trace points... [2.618s] Computing alignments... [82.871s] Deallocating buffers... [0.044s] Loading trace points... [0.055s] Sorting trace points... [2.317s] Computing alignments... [83.14s] Deallocating buffers... [0.062s] Loading trace points... [0.002s] Sorting trace points... [3.321s] Computing alignments... [85.353s] Deallocating buffers... [0.058s] Loading trace points... [0.058s] Sorting trace points... [3.343s] Computing alignments... [81.724s] Deallocating buffers... [0.057s] Loading trace points... [0.053s] Sorting trace points... [3.371s] Computing alignments... [83.118s] Deallocating buffers... [0.057s] Loading trace points... [0.057s] Sorting trace points... [3.396s] Computing alignments... [83.857s] Deallocating buffers... [0.048s] Loading trace points... [0.058s] Sorting trace points... [3.296s] Computing alignments... [84.696s] Deallocating buffers... [0.058s] Loading trace points... [0.045s] Sorting trace points... [3.236s] Computing alignments... [83.633s] Deallocating buffers... [0.067s] Loading trace points... [0.069s] Sorting trace points... [2.394s] Computing alignments... [81.801s] Deallocating buffers... [0.062s] Loading trace points... [0.061s] Sorting trace points... [3.338s] Computing alignments... [82.983s] Deallocating buffers... [0.066s] Loading trace points... [0s] Sorting trace points... [2.415s] Computing alignments... [81.843s] Deallocating buffers... [0.061s] Loading trace points... [0s] [1400.92s] Deallocating reference... [0.076s] Loading reference sequences... [26.615s] Masking reference... [25.19s] Initializing dictionary... [0.064s] Initializing temporary storage... [0.01s] Building reference histograms... [26.767s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.377s] Building query seed array... [2.27s] Computing hash join... [4.134s] Masking low complexity seeds... [0.219s] Searching alignments... [575.676s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.666s] Building query seed array... [2.564s] Computing hash join... [4.157s] Masking low complexity seeds... [0.216s] Searching alignments... [246.918s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.833s] Building query seed array... [2.657s] Computing hash join... [4.166s] Masking low complexity seeds... [0.227s] Searching alignments... [182.741s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.297s] Building query seed array... [2.215s] Computing hash join... [4.141s] Masking low complexity seeds... [0.21s] Searching alignments... [188.054s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.214s] Building query seed array... [2.022s] Computing hash join... [4.051s] Masking low complexity seeds... [0.2s] Searching alignments... [271.478s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.991s] Building query seed array... [2.323s] Computing hash join... [4.026s] Masking low complexity seeds... [0.211s] Searching alignments... [204.974s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.607s] Building query seed array... [2.412s] Computing hash join... [4.033s] Masking low complexity seeds... [0.213s] Searching alignments... [155.186s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.115s] Building query seed array... [2.136s] Computing hash join... [4.068s] Masking low complexity seeds... [0.21s] Searching alignments... [156.511s] Deallocating memory... [0s] Deallocating buffers... [0.112s] Clearing query masking... [1.531s] Opening temporary output file... [0.02s] Computing alignments... Loading trace points... [13.824s] Sorting trace points... [2.658s] Computing alignments... [63.518s] Deallocating buffers... [0.046s] Loading trace points... [0.051s] Sorting trace points... [2.027s] Computing alignments... [63.714s] Deallocating buffers... [0.048s] Loading trace points... [0.081s] Sorting trace points... [2.622s] Computing alignments... [63.345s] Deallocating buffers... [0.045s] Loading trace points... [0.09s] Sorting trace points... [2.842s] Computing alignments... [65.82s] Deallocating buffers... [0.054s] Loading trace points... [0.058s] Sorting trace points... [1.946s] Computing alignments... [62.98s] Deallocating buffers... [0.052s] Loading trace points... [0.096s] Sorting trace points... [2.515s] Computing alignments... [63.418s] Deallocating buffers... [0.047s] Loading trace points... [0.063s] Sorting trace points... [1.899s] Computing alignments... [63.722s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [2.289s] Computing alignments... [64.88s] Deallocating buffers... [0.054s] Loading trace points... [0.046s] Sorting trace points... [2.046s] Computing alignments... [63.065s] Deallocating buffers... [0.048s] Loading trace points... [0.07s] Sorting trace points... [2.641s] Computing alignments... [64.098s] Deallocating buffers... [0.042s] Loading trace points... [0.064s] Sorting trace points... [2.785s] Computing alignments... [64.272s] Deallocating buffers... [0.047s] Loading trace points... [0.057s] Sorting trace points... [2.441s] Computing alignments... [64.591s] Deallocating buffers... [0.049s] Loading trace points... [0.106s] Sorting trace points... [2.629s] Computing alignments... [63.191s] Deallocating buffers... [0.054s] Loading trace points... [0.085s] Sorting trace points... [2.07s] Computing alignments... [62.937s] Deallocating buffers... [0.053s] Loading trace points... [0.061s] Sorting trace points... [2.64s] Computing alignments... [63.996s] Deallocating buffers... [0.046s] Loading trace points... [0s] Sorting trace points... [2.544s] Computing alignments... [62.841s] Deallocating buffers... [0.046s] Loading trace points... [0s] [1074.63s] Deallocating reference... [0.062s] Loading reference sequences... [0.11s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [4016.55s] [4016.55s] Deallocating queries... [0.068s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.248s] [4.15s] Closing the database... [0s] Cleaning up... [0s] Total time = 61373.2s Reported 5043706280 pairwise alignments, 5043706280 HSPs. 5681258 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-08.trimmed.R2.fastq.gz complete: CH10-08.trimmed.R2.blastx.meganized.daa Now MEGANizing CH10-08.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH10-08.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (208.2s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8,953.9s) Total reads: 5,681,258 With hits: 5,681,258 Alignments: 3,905,473,462 Assig. Taxonomy: 3,329,542 Assig. SEED: 147,354 Assig. EGGNOG: 32,193 Assig. GTDB: 272,305 Assig. EC: 608,070 Assig. INTERPRO2GO: 1,528,270 MinSupport set to: 2840 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 6,551 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (20.2s) Min-supp. changes: 5,157 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.1s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 179 Class. SEED: 489 Class. EGGNOG: 1,696 Class. GTDB: 54 Class. EC: 2,422 Class. INTERPRO2GO: 8,734 Total time: 9,202s Peak memory: 32.1 of 195.3G MEGANization of CH10-08.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-11.trimmed.R1.fastq.gz... 150a6079a28a13e266bc8032a0868d68 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-11.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-11.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.305s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.744s] Opening the output file... [0s] Loading query sequences... [97.198s] Masking queries... [26.922s] Algorithm: Double-indexed Building query histograms... [20.809s] Loading reference sequences... [29.375s] Masking reference... [30.854s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.01s] Building reference histograms... [32.953s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.167s] Building query seed array... [2.275s] Computing hash join... [5.144s] Masking low complexity seeds... [0.23s] Searching alignments... [235.591s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.857s] Building query seed array... [2.594s] Computing hash join... [4.933s] Masking low complexity seeds... [0.231s] Searching alignments... [95.729s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.454s] Building query seed array... [2.619s] Computing hash join... [4.989s] Masking low complexity seeds... [0.241s] Searching alignments... [78.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.111s] Building query seed array... [2.221s] Computing hash join... [5.039s] Masking low complexity seeds... [0.227s] Searching alignments... [73.983s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.918s] Building query seed array... [2.046s] Computing hash join... [4.948s] Masking low complexity seeds... [0.219s] Searching alignments... [101.717s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.135s] Building query seed array... [2.325s] Computing hash join... [4.888s] Masking low complexity seeds... [0.223s] Searching alignments... [85.668s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.564s] Building query seed array... [2.449s] Computing hash join... [4.887s] Masking low complexity seeds... [0.222s] Searching alignments... [68.3s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.989s] Building query seed array... [2.056s] Computing hash join... [4.812s] Masking low complexity seeds... [0.226s] Searching alignments... [69.198s] Deallocating memory... [0s] Deallocating buffers... [0.128s] Clearing query masking... [1.627s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.447s] Sorting trace points... [1.167s] Computing alignments... [31.061s] Deallocating buffers... [0.022s] Loading trace points... [0.052s] Sorting trace points... [1.159s] Computing alignments... [31.567s] Deallocating buffers... [0.024s] Loading trace points... [0.086s] Sorting trace points... [1.172s] Computing alignments... [31.223s] Deallocating buffers... [0.021s] Loading trace points... [0.597s] Sorting trace points... [1.251s] Computing alignments... [32.837s] Deallocating buffers... [0.026s] Loading trace points... [0.081s] Sorting trace points... [1.197s] Computing alignments... [30.415s] Deallocating buffers... [0.022s] Loading trace points... [0.055s] Sorting trace points... [0.934s] Computing alignments... [31.237s] Deallocating buffers... [0.022s] Loading trace points... [0.07s] Sorting trace points... [1.107s] Computing alignments... [30.992s] Deallocating buffers... [0.021s] Loading trace points... [0.071s] Sorting trace points... [1.205s] Computing alignments... [32.136s] Deallocating buffers... [0.023s] Loading trace points... [0.064s] Sorting trace points... [1.139s] Computing alignments... [31.4s] Deallocating buffers... [0.022s] Loading trace points... [0.065s] Sorting trace points... [1.215s] Computing alignments... [32.29s] Deallocating buffers... [0.026s] Loading trace points... [0.057s] Sorting trace points... [1.187s] Computing alignments... [32.066s] Deallocating buffers... [0.022s] Loading trace points... [0.07s] Sorting trace points... [1.155s] Computing alignments... [32.86s] Deallocating buffers... [0.026s] Loading trace points... [0.067s] Sorting trace points... [1.242s] Computing alignments... [31.69s] Deallocating buffers... [0.022s] Loading trace points... [0.053s] Sorting trace points... [1.193s] Computing alignments... [31.484s] Deallocating buffers... [0.025s] Loading trace points... [0.071s] Sorting trace points... [1.156s] Computing alignments... [31.388s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.186s] Computing alignments... [31.639s] Deallocating buffers... [0.022s] Loading trace points... [0s] [533.338s] Deallocating reference... [0.073s] Loading reference sequences... [29.67s] Masking reference... [32.181s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.05s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.35s] Building query seed array... [2.25s] Computing hash join... [5.018s] Masking low complexity seeds... [0.228s] Searching alignments... [233.097s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.978s] Building query seed array... [2.534s] Computing hash join... [4.911s] Masking low complexity seeds... [0.226s] Searching alignments... [94.483s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.834s] Building query seed array... [2.786s] Computing hash join... [5.044s] Masking low complexity seeds... [0.234s] Searching alignments... [77.034s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.139s] Building query seed array... [2.223s] Computing hash join... [4.876s] Masking low complexity seeds... [0.224s] Searching alignments... [73.034s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.144s] Building query seed array... [2.066s] Computing hash join... [4.816s] Masking low complexity seeds... [0.219s] Searching alignments... [102.892s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.49s] Building query seed array... [2.398s] Computing hash join... [4.767s] Masking low complexity seeds... [0.22s] Searching alignments... [84.93s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.447s] Building query seed array... [2.396s] Computing hash join... [4.824s] Masking low complexity seeds... [0.216s] Searching alignments... [68.525s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.973s] Building query seed array... [2.045s] Computing hash join... [4.847s] Masking low complexity seeds... [0.218s] Searching alignments... [69.569s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.594s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.529s] Sorting trace points... [1.175s] Computing alignments... [33.519s] Deallocating buffers... [0.025s] Loading trace points... [0.051s] Sorting trace points... [1.217s] Computing alignments... [34.051s] Deallocating buffers... [0.02s] Loading trace points... [0.073s] Sorting trace points... [0.897s] Computing alignments... [33.061s] Deallocating buffers... [0.02s] Loading trace points... [0.068s] Sorting trace points... [1.17s] Computing alignments... [35.909s] Deallocating buffers... [0.025s] Loading trace points... [0.068s] Sorting trace points... [1.102s] Computing alignments... [32.803s] Deallocating buffers... [0.021s] Loading trace points... [0.062s] Sorting trace points... [0.87s] Computing alignments... [34.918s] Deallocating buffers... [0.03s] Loading trace points... [0.091s] Sorting trace points... [1.166s] Computing alignments... [33.841s] Deallocating buffers... [0.024s] Loading trace points... [0.068s] Sorting trace points... [0.935s] Computing alignments... [34.888s] Deallocating buffers... [0.025s] Loading trace points... [0.09s] Sorting trace points... [1.059s] Computing alignments... [33.651s] Deallocating buffers... [0.029s] Loading trace points... [0.055s] Sorting trace points... [1.087s] Computing alignments... [34.967s] Deallocating buffers... [0.025s] Loading trace points... [0.086s] Sorting trace points... [1.243s] Computing alignments... [34.355s] Deallocating buffers... [0.024s] Loading trace points... [0.063s] Sorting trace points... [1.261s] Computing alignments... [35.311s] Deallocating buffers... [0.025s] Loading trace points... [0.065s] Sorting trace points... [1.164s] Computing alignments... [33.976s] Deallocating buffers... [0.024s] Loading trace points... [0.057s] Sorting trace points... [0.983s] Computing alignments... [34.317s] Deallocating buffers... [0.023s] Loading trace points... [0.27s] Sorting trace points... [1.2s] Computing alignments... [34.028s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.144s] Computing alignments... [34.19s] Deallocating buffers... [0.023s] Loading trace points... [0s] [573.662s] Deallocating reference... [0.079s] Loading reference sequences... [29.431s] Masking reference... [30.859s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [33.281s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.569s] Building query seed array... [2.251s] Computing hash join... [5.042s] Masking low complexity seeds... [0.233s] Searching alignments... [238.055s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.418s] Building query seed array... [2.598s] Computing hash join... [5.05s] Masking low complexity seeds... [0.235s] Searching alignments... [95.974s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.351s] Building query seed array... [2.688s] Computing hash join... [4.891s] Masking low complexity seeds... [0.239s] Searching alignments... [76.147s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.274s] Building query seed array... [2.232s] Computing hash join... [4.979s] Masking low complexity seeds... [0.23s] Searching alignments... [73.223s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.107s] Building query seed array... [2.022s] Computing hash join... [4.762s] Masking low complexity seeds... [0.217s] Searching alignments... [105.53s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.449s] Building query seed array... [2.311s] Computing hash join... [4.864s] Masking low complexity seeds... [0.215s] Searching alignments... [86.29s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.201s] Building query seed array... [2.52s] Computing hash join... [4.818s] Masking low complexity seeds... [0.215s] Searching alignments... [66.848s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.748s] Building query seed array... [2.083s] Computing hash join... [4.795s] Masking low complexity seeds... [0.212s] Searching alignments... [67.486s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.665s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.448s] Sorting trace points... [1.171s] Computing alignments... [33.171s] Deallocating buffers... [0.024s] Loading trace points... [0.001s] Sorting trace points... [1.154s] Computing alignments... [33.664s] Deallocating buffers... [0.022s] Loading trace points... [0.064s] Sorting trace points... [0.975s] Computing alignments... [32.6s] Deallocating buffers... [0.022s] Loading trace points... [0.092s] Sorting trace points... [1.22s] Computing alignments... [35.117s] Deallocating buffers... [0.023s] Loading trace points... [0.077s] Sorting trace points... [1.152s] Computing alignments... [32.604s] Deallocating buffers... [0.025s] Loading trace points... [0.06s] Sorting trace points... [1.167s] Computing alignments... [34.292s] Deallocating buffers... [0.022s] Loading trace points... [0.091s] Sorting trace points... [1.119s] Computing alignments... [33.535s] Deallocating buffers... [0.027s] Loading trace points... [0.109s] Sorting trace points... [1.188s] Computing alignments... [34.277s] Deallocating buffers... [0.024s] Loading trace points... [0.074s] Sorting trace points... [1.13s] Computing alignments... [33.804s] Deallocating buffers... [0.028s] Loading trace points... [0.087s] Sorting trace points... [1.186s] Computing alignments... [34.684s] Deallocating buffers... [0.027s] Loading trace points... [0.069s] Sorting trace points... [1.206s] Computing alignments... [34.301s] Deallocating buffers... [0.023s] Loading trace points... [0.058s] Sorting trace points... [1.242s] Computing alignments... [34.941s] Deallocating buffers... [0.024s] Loading trace points... [0.042s] Sorting trace points... [1.214s] Computing alignments... [33.888s] Deallocating buffers... [0.022s] Loading trace points... [0.049s] Sorting trace points... [1.122s] Computing alignments... [34.337s] Deallocating buffers... [0.022s] Loading trace points... [0.053s] Sorting trace points... [1.228s] Computing alignments... [33.871s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.161s] Computing alignments... [33.702s] Deallocating buffers... [0.028s] Loading trace points... [0s] [570.295s] Deallocating reference... [0.072s] Loading reference sequences... [29.666s] Masking reference... [30.913s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.47s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.356s] Building query seed array... [2.249s] Computing hash join... [5.106s] Masking low complexity seeds... [0.231s] Searching alignments... [235.623s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.801s] Building query seed array... [2.566s] Computing hash join... [5.129s] Masking low complexity seeds... [0.236s] Searching alignments... [97.683s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.195s] Building query seed array... [2.631s] Computing hash join... [5.036s] Masking low complexity seeds... [0.227s] Searching alignments... [77.402s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.808s] Building query seed array... [2.212s] Computing hash join... [5.061s] Masking low complexity seeds... [0.23s] Searching alignments... [72.368s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.846s] Building query seed array... [2.076s] Computing hash join... [4.777s] Masking low complexity seeds... [0.22s] Searching alignments... [102.708s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.496s] Building query seed array... [2.342s] Computing hash join... [4.771s] Masking low complexity seeds... [0.219s] Searching alignments... [86.209s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.203s] Building query seed array... [2.461s] Computing hash join... [4.773s] Masking low complexity seeds... [0.222s] Searching alignments... [67.865s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.911s] Building query seed array... [2.101s] Computing hash join... [4.889s] Masking low complexity seeds... [0.218s] Searching alignments... [70.886s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [1.71s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.423s] Sorting trace points... [1.185s] Computing alignments... [34.623s] Deallocating buffers... [0.022s] Loading trace points... [0.087s] Sorting trace points... [1.169s] Computing alignments... [35.02s] Deallocating buffers... [0.025s] Loading trace points... [0.037s] Sorting trace points... [1.113s] Computing alignments... [33.998s] Deallocating buffers... [0.023s] Loading trace points... [0.069s] Sorting trace points... [1.153s] Computing alignments... [36.794s] Deallocating buffers... [0.024s] Loading trace points... [0.062s] Sorting trace points... [0.911s] Computing alignments... [33.545s] Deallocating buffers... [0.022s] Loading trace points... [0.001s] Sorting trace points... [0.901s] Computing alignments... [36.243s] Deallocating buffers... [0.024s] Loading trace points... [0.069s] Sorting trace points... [1.137s] Computing alignments... [34.516s] Deallocating buffers... [0.029s] Loading trace points... [0.094s] Sorting trace points... [1.02s] Computing alignments... [36.083s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.152s] Computing alignments... [35.046s] Deallocating buffers... [0.025s] Loading trace points... [0.055s] Sorting trace points... [1.176s] Computing alignments... [36.441s] Deallocating buffers... [0.026s] Loading trace points... [0.033s] Sorting trace points... [1.219s] Computing alignments... [35.465s] Deallocating buffers... [0.032s] Loading trace points... [0.054s] Sorting trace points... [1.251s] Computing alignments... [36.453s] Deallocating buffers... [0.026s] Loading trace points... [0.072s] Sorting trace points... [1.227s] Computing alignments... [34.796s] Deallocating buffers... [0.027s] Loading trace points... [0.078s] Sorting trace points... [1.051s] Computing alignments... [35.342s] Deallocating buffers... [0.024s] Loading trace points... [0.062s] Sorting trace points... [1.176s] Computing alignments... [35.292s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.177s] Computing alignments... [35.257s] Deallocating buffers... [0.028s] Loading trace points... [0s] [590.657s] Deallocating reference... [0.08s] Loading reference sequences... [29.7s] Masking reference... [32.159s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.009s] Building reference histograms... [32.064s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.298s] Building query seed array... [2.354s] Computing hash join... [5.026s] Masking low complexity seeds... [0.235s] Searching alignments... [233.064s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.587s] Building query seed array... [2.566s] Computing hash join... [4.909s] Masking low complexity seeds... [0.224s] Searching alignments... [95.761s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.932s] Building query seed array... [2.697s] Computing hash join... [4.971s] Masking low complexity seeds... [0.231s] Searching alignments... [79.696s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.926s] Building query seed array... [2.282s] Computing hash join... [4.921s] Masking low complexity seeds... [0.235s] Searching alignments... [75.25s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.934s] Building query seed array... [2.078s] Computing hash join... [4.846s] Masking low complexity seeds... [0.222s] Searching alignments... [105.949s] Deallocating memory... [0.003s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.405s] Building query seed array... [2.343s] Computing hash join... [4.85s] Masking low complexity seeds... [0.217s] Searching alignments... [87.338s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.349s] Building query seed array... [2.465s] Computing hash join... [4.83s] Masking low complexity seeds... [0.222s] Searching alignments... [67.129s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.962s] Building query seed array... [2.05s] Computing hash join... [4.844s] Masking low complexity seeds... [0.219s] Searching alignments... [68.497s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.616s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.513s] Sorting trace points... [1.225s] Computing alignments... [36.96s] Deallocating buffers... [0.033s] Loading trace points... [0.068s] Sorting trace points... [1.168s] Computing alignments... [36.893s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [0.95s] Computing alignments... [35.204s] Deallocating buffers... [0.031s] Loading trace points... [0.075s] Sorting trace points... [1.224s] Computing alignments... [38.757s] Deallocating buffers... [0.036s] Loading trace points... [0.056s] Sorting trace points... [1.121s] Computing alignments... [35.178s] Deallocating buffers... [0.033s] Loading trace points... [0.074s] Sorting trace points... [1.208s] Computing alignments... [38.285s] Deallocating buffers... [0.034s] Loading trace points... [0.076s] Sorting trace points... [1.143s] Computing alignments... [36.38s] Deallocating buffers... [0.032s] Loading trace points... [0.077s] Sorting trace points... [1.209s] Computing alignments... [37.741s] Deallocating buffers... [0.034s] Loading trace points... [0.086s] Sorting trace points... [0.889s] Computing alignments... [37.038s] Deallocating buffers... [0.029s] Loading trace points... [0.078s] Sorting trace points... [1.194s] Computing alignments... [38.085s] Deallocating buffers... [0.033s] Loading trace points... [0.07s] Sorting trace points... [1.084s] Computing alignments... [37.051s] Deallocating buffers... [0.034s] Loading trace points... [0.053s] Sorting trace points... [1.2s] Computing alignments... [38.513s] Deallocating buffers... [0.035s] Loading trace points... [0.059s] Sorting trace points... [0.968s] Computing alignments... [36.816s] Deallocating buffers... [0.032s] Loading trace points... [0.08s] Sorting trace points... [0.947s] Computing alignments... [37.446s] Deallocating buffers... [0.032s] Loading trace points... [0.08s] Sorting trace points... [0.951s] Computing alignments... [37.118s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.214s] Computing alignments... [37.084s] Deallocating buffers... [0.034s] Loading trace points... [0s] [620.401s] Deallocating reference... [0.083s] Loading reference sequences... [29.547s] Masking reference... [32.133s] Initializing dictionary... [0.083s] Initializing temporary storage... [0.01s] Building reference histograms... [32.237s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.395s] Building query seed array... [2.28s] Computing hash join... [5.004s] Masking low complexity seeds... [0.233s] Searching alignments... [236.385s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.38s] Building query seed array... [2.567s] Computing hash join... [4.913s] Masking low complexity seeds... [0.221s] Searching alignments... [93.317s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.035s] Building query seed array... [2.662s] Computing hash join... [4.97s] Masking low complexity seeds... [0.224s] Searching alignments... [77.624s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.392s] Building query seed array... [2.23s] Computing hash join... [4.978s] Masking low complexity seeds... [0.228s] Searching alignments... [72.473s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.924s] Building query seed array... [2.015s] Computing hash join... [4.89s] Masking low complexity seeds... [0.219s] Searching alignments... [98.901s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.481s] Building query seed array... [2.334s] Computing hash join... [4.896s] Masking low complexity seeds... [0.216s] Searching alignments... [84.9s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.228s] Building query seed array... [2.394s] Computing hash join... [4.885s] Masking low complexity seeds... [0.219s] Searching alignments... [67.585s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.958s] Building query seed array... [2.108s] Computing hash join... [4.891s] Masking low complexity seeds... [0.217s] Searching alignments... [67.229s] Deallocating memory... [0s] Deallocating buffers... [0.133s] Clearing query masking... [1.611s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.449s] Sorting trace points... [1.171s] Computing alignments... [30.423s] Deallocating buffers... [0.022s] Loading trace points... [0.064s] Sorting trace points... [1.203s] Computing alignments... [31.284s] Deallocating buffers... [0.025s] Loading trace points... [0.083s] Sorting trace points... [1.069s] Computing alignments... [31.02s] Deallocating buffers... [0.022s] Loading trace points... [0.166s] Sorting trace points... [1.329s] Computing alignments... [32.326s] Deallocating buffers... [0.026s] Loading trace points... [0.085s] Sorting trace points... [1.147s] Computing alignments... [30.38s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.125s] Computing alignments... [30.962s] Deallocating buffers... [0.022s] Loading trace points... [0.073s] Sorting trace points... [1.13s] Computing alignments... [30.639s] Deallocating buffers... [0.021s] Loading trace points... [0.058s] Sorting trace points... [1.157s] Computing alignments... [32.194s] Deallocating buffers... [0.026s] Loading trace points... [0.091s] Sorting trace points... [0.939s] Computing alignments... [31.453s] Deallocating buffers... [0.027s] Loading trace points... [0.046s] Sorting trace points... [1.22s] Computing alignments... [32.094s] Deallocating buffers... [0.025s] Loading trace points... [0.069s] Sorting trace points... [0.909s] Computing alignments... [32.209s] Deallocating buffers... [0.023s] Loading trace points... [0.047s] Sorting trace points... [1.2s] Computing alignments... [32.655s] Deallocating buffers... [0.023s] Loading trace points... [0.066s] Sorting trace points... [0.941s] Computing alignments... [31.329s] Deallocating buffers... [0.023s] Loading trace points... [0.085s] Sorting trace points... [1.122s] Computing alignments... [31.372s] Deallocating buffers... [0.021s] Loading trace points... [0.643s] Sorting trace points... [1.086s] Computing alignments... [31.093s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.152s] Computing alignments... [31.336s] Deallocating buffers... [0.02s] Loading trace points... [0s] [529.231s] Deallocating reference... [0.073s] Loading reference sequences... [30.774s] Masking reference... [31.273s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.215s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.635s] Building query seed array... [2.326s] Computing hash join... [5.017s] Masking low complexity seeds... [0.225s] Searching alignments... [233.345s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.494s] Building query seed array... [2.546s] Computing hash join... [4.88s] Masking low complexity seeds... [0.224s] Searching alignments... [93.613s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.965s] Building query seed array... [2.659s] Computing hash join... [5.001s] Masking low complexity seeds... [0.235s] Searching alignments... [77.123s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.363s] Building query seed array... [2.195s] Computing hash join... [4.983s] Masking low complexity seeds... [0.226s] Searching alignments... [72.714s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.99s] Building query seed array... [2.054s] Computing hash join... [4.818s] Masking low complexity seeds... [0.223s] Searching alignments... [101.897s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.341s] Building query seed array... [2.35s] Computing hash join... [4.855s] Masking low complexity seeds... [0.22s] Searching alignments... [91.545s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.649s] Building query seed array... [2.517s] Computing hash join... [4.843s] Masking low complexity seeds... [0.219s] Searching alignments... [67.586s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.925s] Building query seed array... [2.066s] Computing hash join... [4.834s] Masking low complexity seeds... [0.219s] Searching alignments... [67.987s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.663s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.468s] Sorting trace points... [1.172s] Computing alignments... [31.65s] Deallocating buffers... [0.021s] Loading trace points... [0.072s] Sorting trace points... [1.163s] Computing alignments... [31.009s] Deallocating buffers... [0.025s] Loading trace points... [0.059s] Sorting trace points... [0.977s] Computing alignments... [30.822s] Deallocating buffers... [0.024s] Loading trace points... [0.066s] Sorting trace points... [1.208s] Computing alignments... [32.309s] Deallocating buffers... [0.023s] Loading trace points... [0.783s] Sorting trace points... [1.01s] Computing alignments... [30.045s] Deallocating buffers... [0.022s] Loading trace points... [0.066s] Sorting trace points... [0.889s] Computing alignments... [30.83s] Deallocating buffers... [0.025s] Loading trace points... [0.075s] Sorting trace points... [1.115s] Computing alignments... [30.555s] Deallocating buffers... [0.021s] Loading trace points... [0.058s] Sorting trace points... [0.904s] Computing alignments... [31.665s] Deallocating buffers... [0.024s] Loading trace points... [0.075s] Sorting trace points... [1.024s] Computing alignments... [31.118s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [1.17s] Computing alignments... [31.885s] Deallocating buffers... [0.025s] Loading trace points... [0.083s] Sorting trace points... [1.159s] Computing alignments... [31.974s] Deallocating buffers... [0.022s] Loading trace points... [0.072s] Sorting trace points... [1.3s] Computing alignments... [32.651s] Deallocating buffers... [0.023s] Loading trace points... [0.061s] Sorting trace points... [1.166s] Computing alignments... [31.172s] Deallocating buffers... [0.025s] Loading trace points... [0.05s] Sorting trace points... [0.969s] Computing alignments... [31.117s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.166s] Computing alignments... [31.144s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.136s] Computing alignments... [31.055s] Deallocating buffers... [0.021s] Loading trace points... [0s] [527.098s] Deallocating reference... [0.071s] Loading reference sequences... [29.662s] Masking reference... [30.85s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [33.101s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.333s] Building query seed array... [2.254s] Computing hash join... [4.95s] Masking low complexity seeds... [0.222s] Searching alignments... [232.261s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.819s] Building query seed array... [2.567s] Computing hash join... [5.011s] Masking low complexity seeds... [0.222s] Searching alignments... [94.721s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.378s] Building query seed array... [2.744s] Computing hash join... [4.962s] Masking low complexity seeds... [0.223s] Searching alignments... [76.991s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.821s] Building query seed array... [2.166s] Computing hash join... [4.944s] Masking low complexity seeds... [0.229s] Searching alignments... [71.033s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.045s] Building query seed array... [2.035s] Computing hash join... [4.874s] Masking low complexity seeds... [0.219s] Searching alignments... [100.813s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.488s] Building query seed array... [2.349s] Computing hash join... [4.857s] Masking low complexity seeds... [0.223s] Searching alignments... [84.899s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.636s] Building query seed array... [2.377s] Computing hash join... [4.787s] Masking low complexity seeds... [0.208s] Searching alignments... [67.364s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.231s] Building query seed array... [2.131s] Computing hash join... [4.871s] Masking low complexity seeds... [0.216s] Searching alignments... [69.966s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.689s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.043s] Sorting trace points... [1.177s] Computing alignments... [29.818s] Deallocating buffers... [0.025s] Loading trace points... [0.078s] Sorting trace points... [1.202s] Computing alignments... [30.434s] Deallocating buffers... [0.022s] Loading trace points... [0.082s] Sorting trace points... [1.127s] Computing alignments... [29.934s] Deallocating buffers... [0.022s] Loading trace points... [0.076s] Sorting trace points... [1.245s] Computing alignments... [31.648s] Deallocating buffers... [0.027s] Loading trace points... [0.054s] Sorting trace points... [1.077s] Computing alignments... [29.392s] Deallocating buffers... [0.02s] Loading trace points... [0.062s] Sorting trace points... [1.148s] Computing alignments... [30.097s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.123s] Computing alignments... [29.783s] Deallocating buffers... [0.022s] Loading trace points... [0.059s] Sorting trace points... [1.169s] Computing alignments... [31.047s] Deallocating buffers... [0.025s] Loading trace points... [0.072s] Sorting trace points... [1.163s] Computing alignments... [30.414s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.151s] Computing alignments... [31.109s] Deallocating buffers... [0.026s] Loading trace points... [0.07s] Sorting trace points... [0.953s] Computing alignments... [31.056s] Deallocating buffers... [0.023s] Loading trace points... [0.045s] Sorting trace points... [1.193s] Computing alignments... [31.783s] Deallocating buffers... [0.019s] Loading trace points... [0.039s] Sorting trace points... [1.074s] Computing alignments... [30.523s] Deallocating buffers... [0.022s] Loading trace points... [0.067s] Sorting trace points... [1.14s] Computing alignments... [30.415s] Deallocating buffers... [0.021s] Loading trace points... [0.055s] Sorting trace points... [1.19s] Computing alignments... [30.479s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [0.909s] Computing alignments... [30.338s] Deallocating buffers... [0.023s] Loading trace points... [0s] [514.643s] Deallocating reference... [0.076s] Loading reference sequences... [29.52s] Masking reference... [30.879s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.683s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.297s] Building query seed array... [2.265s] Computing hash join... [4.98s] Masking low complexity seeds... [0.228s] Searching alignments... [236.033s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.326s] Building query seed array... [2.545s] Computing hash join... [5.048s] Masking low complexity seeds... [0.226s] Searching alignments... [95.762s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.223s] Building query seed array... [2.623s] Computing hash join... [4.973s] Masking low complexity seeds... [0.23s] Searching alignments... [77.892s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.881s] Building query seed array... [2.225s] Computing hash join... [4.945s] Masking low complexity seeds... [0.224s] Searching alignments... [71.99s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.92s] Building query seed array... [2.048s] Computing hash join... [4.812s] Masking low complexity seeds... [0.216s] Searching alignments... [108.303s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.144s] Building query seed array... [2.386s] Computing hash join... [4.768s] Masking low complexity seeds... [0.211s] Searching alignments... [86.932s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.117s] Building query seed array... [2.42s] Computing hash join... [4.851s] Masking low complexity seeds... [0.213s] Searching alignments... [67.489s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.127s] Building query seed array... [2.07s] Computing hash join... [4.818s] Masking low complexity seeds... [0.22s] Searching alignments... [68.124s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.626s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.548s] Sorting trace points... [1.174s] Computing alignments... [35.563s] Deallocating buffers... [0.027s] Loading trace points... [0.053s] Sorting trace points... [1.159s] Computing alignments... [36.183s] Deallocating buffers... [0.034s] Loading trace points... [0.077s] Sorting trace points... [0.876s] Computing alignments... [34.237s] Deallocating buffers... [0.027s] Loading trace points... [0.079s] Sorting trace points... [0.988s] Computing alignments... [37.518s] Deallocating buffers... [0.027s] Loading trace points... [0.051s] Sorting trace points... [1.014s] Computing alignments... [34.192s] Deallocating buffers... [0.025s] Loading trace points... [0.075s] Sorting trace points... [1.194s] Computing alignments... [36.873s] Deallocating buffers... [0.022s] Loading trace points... [0.088s] Sorting trace points... [1.06s] Computing alignments... [35.65s] Deallocating buffers... [0.028s] Loading trace points... [0.069s] Sorting trace points... [0.939s] Computing alignments... [36.666s] Deallocating buffers... [0.034s] Loading trace points... [0.082s] Sorting trace points... [1.009s] Computing alignments... [35.887s] Deallocating buffers... [0.03s] Loading trace points... [0.002s] Sorting trace points... [1.216s] Computing alignments... [37.04s] Deallocating buffers... [0.037s] Loading trace points... [0.078s] Sorting trace points... [1.104s] Computing alignments... [36.185s] Deallocating buffers... [0.027s] Loading trace points... [0.034s] Sorting trace points... [1.274s] Computing alignments... [37.225s] Deallocating buffers... [0.028s] Loading trace points... [0.075s] Sorting trace points... [1.125s] Computing alignments... [35.587s] Deallocating buffers... [0.033s] Loading trace points... [0.069s] Sorting trace points... [1.141s] Computing alignments... [36.048s] Deallocating buffers... [0.022s] Loading trace points... [0.057s] Sorting trace points... [1.164s] Computing alignments... [36.008s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.194s] Computing alignments... [35.656s] Deallocating buffers... [0.029s] Loading trace points... [0s] [602.168s] Deallocating reference... [0.078s] Loading reference sequences... [32.421s] Masking reference... [31.953s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.979s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.314s] Building query seed array... [2.298s] Computing hash join... [5.107s] Masking low complexity seeds... [0.226s] Searching alignments... [230.576s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.598s] Building query seed array... [2.536s] Computing hash join... [5.026s] Masking low complexity seeds... [0.223s] Searching alignments... [94.323s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.497s] Building query seed array... [2.668s] Computing hash join... [4.995s] Masking low complexity seeds... [0.229s] Searching alignments... [77.851s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.709s] Building query seed array... [2.238s] Computing hash join... [4.992s] Masking low complexity seeds... [0.238s] Searching alignments... [74.652s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.81s] Building query seed array... [2.03s] Computing hash join... [4.917s] Masking low complexity seeds... [0.221s] Searching alignments... [99.411s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.244s] Building query seed array... [2.369s] Computing hash join... [4.813s] Masking low complexity seeds... [0.222s] Searching alignments... [86.017s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.797s] Building query seed array... [2.993s] Computing hash join... [4.902s] Masking low complexity seeds... [0.219s] Searching alignments... [68.208s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.236s] Building query seed array... [2.037s] Computing hash join... [4.883s] Masking low complexity seeds... [0.216s] Searching alignments... [69.006s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.675s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.574s] Sorting trace points... [1.172s] Computing alignments... [29.205s] Deallocating buffers... [0.021s] Loading trace points... [0.049s] Sorting trace points... [1.07s] Computing alignments... [29.81s] Deallocating buffers... [0.024s] Loading trace points... [0.067s] Sorting trace points... [1.145s] Computing alignments... [29.296s] Deallocating buffers... [0.022s] Loading trace points... [0.06s] Sorting trace points... [1.264s] Computing alignments... [31.205s] Deallocating buffers... [0.023s] Loading trace points... [0.058s] Sorting trace points... [1.152s] Computing alignments... [29.03s] Deallocating buffers... [0.022s] Loading trace points... [0.078s] Sorting trace points... [1.15s] Computing alignments... [29.47s] Deallocating buffers... [0.018s] Loading trace points... [0.075s] Sorting trace points... [0.857s] Computing alignments... [29.374s] Deallocating buffers... [0.023s] Loading trace points... [0.061s] Sorting trace points... [1.178s] Computing alignments... [30.358s] Deallocating buffers... [0.022s] Loading trace points... [0.077s] Sorting trace points... [1.169s] Computing alignments... [29.804s] Deallocating buffers... [0.021s] Loading trace points... [0.002s] Sorting trace points... [1.202s] Computing alignments... [30.376s] Deallocating buffers... [0.022s] Loading trace points... [0.059s] Sorting trace points... [0.938s] Computing alignments... [30.365s] Deallocating buffers... [0.023s] Loading trace points... [0.052s] Sorting trace points... [1.19s] Computing alignments... [31.222s] Deallocating buffers... [0.023s] Loading trace points... [0.069s] Sorting trace points... [1.171s] Computing alignments... [29.862s] Deallocating buffers... [0.021s] Loading trace points... [0.088s] Sorting trace points... [1.153s] Computing alignments... [29.835s] Deallocating buffers... [0.022s] Loading trace points... [0.099s] Sorting trace points... [1.162s] Computing alignments... [29.798s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.139s] Computing alignments... [29.701s] Deallocating buffers... [0.019s] Loading trace points... [0s] [504.729s] Deallocating reference... [0.06s] Loading reference sequences... [29.699s] Masking reference... [30.864s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [33.002s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.728s] Building query seed array... [2.278s] Computing hash join... [4.998s] Masking low complexity seeds... [0.229s] Searching alignments... [233.744s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.5s] Building query seed array... [2.529s] Computing hash join... [4.928s] Masking low complexity seeds... [0.23s] Searching alignments... [94.877s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.244s] Building query seed array... [2.71s] Computing hash join... [4.963s] Masking low complexity seeds... [0.224s] Searching alignments... [79.164s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.041s] Building query seed array... [2.21s] Computing hash join... [4.963s] Masking low complexity seeds... [0.235s] Searching alignments... [72.163s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.09s] Building query seed array... [2.001s] Computing hash join... [4.968s] Masking low complexity seeds... [0.218s] Searching alignments... [103.142s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.68s] Building query seed array... [2.321s] Computing hash join... [4.969s] Masking low complexity seeds... [0.217s] Searching alignments... [87.609s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.447s] Building query seed array... [2.507s] Computing hash join... [4.845s] Masking low complexity seeds... [0.211s] Searching alignments... [67.501s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.769s] Building query seed array... [2.124s] Computing hash join... [4.796s] Masking low complexity seeds... [0.218s] Searching alignments... [66.896s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.636s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.756s] Sorting trace points... [1.087s] Computing alignments... [35.471s] Deallocating buffers... [0.025s] Loading trace points... [0.048s] Sorting trace points... [1.194s] Computing alignments... [36.336s] Deallocating buffers... [0.023s] Loading trace points... [0.825s] Sorting trace points... [0.919s] Computing alignments... [35.385s] Deallocating buffers... [0.022s] Loading trace points... [0.054s] Sorting trace points... [1.244s] Computing alignments... [37.476s] Deallocating buffers... [0.03s] Loading trace points... [0.053s] Sorting trace points... [1.138s] Computing alignments... [34.915s] Deallocating buffers... [0.025s] Loading trace points... [0.066s] Sorting trace points... [1.151s] Computing alignments... [37.054s] Deallocating buffers... [0.018s] Loading trace points... [0.108s] Sorting trace points... [1.152s] Computing alignments... [36.258s] Deallocating buffers... [0.023s] Loading trace points... [0.097s] Sorting trace points... [0.94s] Computing alignments... [37.206s] Deallocating buffers... [0.024s] Loading trace points... [0.097s] Sorting trace points... [1.194s] Computing alignments... [36.668s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [1.243s] Computing alignments... [37.484s] Deallocating buffers... [0.027s] Loading trace points... [0.084s] Sorting trace points... [1.226s] Computing alignments... [36.577s] Deallocating buffers... [0.026s] Loading trace points... [0.051s] Sorting trace points... [1.13s] Computing alignments... [37.596s] Deallocating buffers... [0.025s] Loading trace points... [0.082s] Sorting trace points... [0.903s] Computing alignments... [36.227s] Deallocating buffers... [0.025s] Loading trace points... [0.066s] Sorting trace points... [1.167s] Computing alignments... [36.641s] Deallocating buffers... [0.026s] Loading trace points... [0.065s] Sorting trace points... [1.175s] Computing alignments... [36.19s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.195s] Computing alignments... [36.195s] Deallocating buffers... [0.022s] Loading trace points... [0s] [610.736s] Deallocating reference... [0.076s] Loading reference sequences... [29.548s] Masking reference... [30.885s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.066s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.422s] Building query seed array... [2.31s] Computing hash join... [5.049s] Masking low complexity seeds... [0.231s] Searching alignments... [235.501s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.051s] Building query seed array... [2.603s] Computing hash join... [4.904s] Masking low complexity seeds... [0.222s] Searching alignments... [96.249s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.241s] Building query seed array... [2.627s] Computing hash join... [4.942s] Masking low complexity seeds... [0.234s] Searching alignments... [77.69s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.165s] Building query seed array... [2.258s] Computing hash join... [4.941s] Masking low complexity seeds... [0.225s] Searching alignments... [73.256s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.774s] Building query seed array... [2.032s] Computing hash join... [4.969s] Masking low complexity seeds... [0.226s] Searching alignments... [105.179s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.125s] Building query seed array... [2.318s] Computing hash join... [4.816s] Masking low complexity seeds... [0.222s] Searching alignments... [89.069s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.098s] Building query seed array... [2.512s] Computing hash join... [4.828s] Masking low complexity seeds... [0.217s] Searching alignments... [68.283s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.871s] Building query seed array... [2.042s] Computing hash join... [4.909s] Masking low complexity seeds... [0.216s] Searching alignments... [69.847s] Deallocating memory... [0s] Deallocating buffers... [0.153s] Clearing query masking... [1.634s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.681s] Sorting trace points... [1.117s] Computing alignments... [36.296s] Deallocating buffers... [0.031s] Loading trace points... [0.057s] Sorting trace points... [1.017s] Computing alignments... [36.525s] Deallocating buffers... [0.034s] Loading trace points... [0.041s] Sorting trace points... [0.907s] Computing alignments... [35.042s] Deallocating buffers... [0.03s] Loading trace points... [0.051s] Sorting trace points... [1.235s] Computing alignments... [38.026s] Deallocating buffers... [0.03s] Loading trace points... [0.08s] Sorting trace points... [1.17s] Computing alignments... [35.125s] Deallocating buffers... [0.03s] Loading trace points... [0.051s] Sorting trace points... [1.19s] Computing alignments... [37.785s] Deallocating buffers... [0.03s] Loading trace points... [0.068s] Sorting trace points... [1.162s] Computing alignments... [36.509s] Deallocating buffers... [0.031s] Loading trace points... [0.453s] Sorting trace points... [1.185s] Computing alignments... [37.592s] Deallocating buffers... [0.036s] Loading trace points... [0.06s] Sorting trace points... [1.176s] Computing alignments... [37.241s] Deallocating buffers... [0.034s] Loading trace points... [0.082s] Sorting trace points... [1.026s] Computing alignments... [37.892s] Deallocating buffers... [0.038s] Loading trace points... [0.063s] Sorting trace points... [0.923s] Computing alignments... [37.067s] Deallocating buffers... [0.031s] Loading trace points... [0.057s] Sorting trace points... [1.319s] Computing alignments... [37.962s] Deallocating buffers... [0.035s] Loading trace points... [0.076s] Sorting trace points... [0.934s] Computing alignments... [36.491s] Deallocating buffers... [0.034s] Loading trace points... [0.064s] Sorting trace points... [1.199s] Computing alignments... [37.13s] Deallocating buffers... [0.029s] Loading trace points... [0.087s] Sorting trace points... [0.932s] Computing alignments... [36.682s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.206s] Computing alignments... [36.548s] Deallocating buffers... [0.033s] Loading trace points... [0s] [616.211s] Deallocating reference... [0.08s] Loading reference sequences... [29.435s] Masking reference... [30.853s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.893s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.957s] Building query seed array... [2.275s] Computing hash join... [4.99s] Masking low complexity seeds... [0.225s] Searching alignments... [232.564s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.388s] Building query seed array... [2.57s] Computing hash join... [5.037s] Masking low complexity seeds... [0.227s] Searching alignments... [97.06s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.244s] Building query seed array... [2.679s] Computing hash join... [4.985s] Masking low complexity seeds... [0.225s] Searching alignments... [78.512s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.763s] Building query seed array... [2.248s] Computing hash join... [4.887s] Masking low complexity seeds... [0.23s] Searching alignments... [73.226s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.124s] Building query seed array... [2.074s] Computing hash join... [4.865s] Masking low complexity seeds... [0.22s] Searching alignments... [107.8s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.151s] Building query seed array... [2.369s] Computing hash join... [4.855s] Masking low complexity seeds... [0.223s] Searching alignments... [86.914s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.991s] Building query seed array... [2.411s] Computing hash join... [4.902s] Masking low complexity seeds... [0.227s] Searching alignments... [66.426s] Deallocating memory... [0.003s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.384s] Building query seed array... [2.093s] Computing hash join... [4.932s] Masking low complexity seeds... [0.219s] Searching alignments... [66.479s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.578s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.52s] Sorting trace points... [1.188s] Computing alignments... [34.287s] Deallocating buffers... [0.022s] Loading trace points... [0.046s] Sorting trace points... [1.175s] Computing alignments... [35.296s] Deallocating buffers... [0.022s] Loading trace points... [0.069s] Sorting trace points... [0.997s] Computing alignments... [34.115s] Deallocating buffers... [0.024s] Loading trace points... [0.059s] Sorting trace points... [1.002s] Computing alignments... [36.476s] Deallocating buffers... [0.018s] Loading trace points... [0.049s] Sorting trace points... [1.151s] Computing alignments... [33.477s] Deallocating buffers... [0.021s] Loading trace points... [0.074s] Sorting trace points... [1.085s] Computing alignments... [35.681s] Deallocating buffers... [0.024s] Loading trace points... [0.068s] Sorting trace points... [1.18s] Computing alignments... [34.63s] Deallocating buffers... [0.022s] Loading trace points... [0.055s] Sorting trace points... [1.173s] Computing alignments... [35.772s] Deallocating buffers... [0.026s] Loading trace points... [0.078s] Sorting trace points... [0.977s] Computing alignments... [35.094s] Deallocating buffers... [0.023s] Loading trace points... [0.105s] Sorting trace points... [1.037s] Computing alignments... [36.3s] Deallocating buffers... [0.023s] Loading trace points... [0.081s] Sorting trace points... [1.204s] Computing alignments... [35.595s] Deallocating buffers... [0.022s] Loading trace points... [0.054s] Sorting trace points... [1.242s] Computing alignments... [36.126s] Deallocating buffers... [0.022s] Loading trace points... [0.07s] Sorting trace points... [1.105s] Computing alignments... [35.16s] Deallocating buffers... [0.027s] Loading trace points... [0.066s] Sorting trace points... [1.196s] Computing alignments... [35.331s] Deallocating buffers... [0.026s] Loading trace points... [0.223s] Sorting trace points... [1.171s] Computing alignments... [34.885s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.014s] Computing alignments... [34.862s] Deallocating buffers... [0.023s] Loading trace points... [0s] [589.073s] Deallocating reference... [0.075s] Loading reference sequences... [27.11s] Masking reference... [25.246s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.007s] Building reference histograms... [26.388s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.578s] Building query seed array... [2.26s] Computing hash join... [4.2s] Masking low complexity seeds... [0.22s] Searching alignments... [188.959s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.854s] Building query seed array... [2.593s] Computing hash join... [4.078s] Masking low complexity seeds... [0.226s] Searching alignments... [78.341s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.986s] Building query seed array... [2.744s] Computing hash join... [4.066s] Masking low complexity seeds... [0.22s] Searching alignments... [65.342s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.38s] Building query seed array... [2.197s] Computing hash join... [4.091s] Masking low complexity seeds... [0.213s] Searching alignments... [58.909s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.221s] Building query seed array... [2.045s] Computing hash join... [4.013s] Masking low complexity seeds... [0.21s] Searching alignments... [82.846s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.208s] Building query seed array... [2.347s] Computing hash join... [3.959s] Masking low complexity seeds... [0.209s] Searching alignments... [69.857s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.639s] Building query seed array... [2.452s] Computing hash join... [4.009s] Masking low complexity seeds... [0.209s] Searching alignments... [53.892s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.118s] Building query seed array... [2.096s] Computing hash join... [3.981s] Masking low complexity seeds... [0.206s] Searching alignments... [56.283s] Deallocating memory... [0s] Deallocating buffers... [0.121s] Clearing query masking... [1.625s] Opening temporary output file... [0.033s] Computing alignments... Loading trace points... [10.927s] Sorting trace points... [1.888s] Computing alignments... [53.183s] Deallocating buffers... [0.034s] Loading trace points... [0.151s] Sorting trace points... [1.626s] Computing alignments... [54.186s] Deallocating buffers... [0.037s] Loading trace points... [0.08s] Sorting trace points... [1.949s] Computing alignments... [53.632s] Deallocating buffers... [0.039s] Loading trace points... [0.172s] Sorting trace points... [1.769s] Computing alignments... [54.068s] Deallocating buffers... [0.025s] Loading trace points... [0.106s] Sorting trace points... [1.938s] Computing alignments... [53.894s] Deallocating buffers... [0.034s] Loading trace points... [0.119s] Sorting trace points... [1.736s] Computing alignments... [55.025s] Deallocating buffers... [0.037s] Loading trace points... [0.118s] Sorting trace points... [1.843s] Computing alignments... [54.106s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.772s] Computing alignments... [53.421s] Deallocating buffers... [0.035s] Loading trace points... [0s] [458.177s] Deallocating reference... [0.066s] Loading reference sequences... [0.079s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1845.78s] [1845.78s] Deallocating queries... [0.065s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.165s] [4.01s] Closing the database... [0s] Cleaning up... [0s] Total time = 24408.2s Reported 1921413568 pairwise alignments, 1921413568 HSPs. 5343597 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-11.trimmed.R1.fastq.gz complete: CH10-11.trimmed.R1.blastx.meganized.daa Now MEGANizing CH10-11.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH10-11.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (177.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,448.1s) Total reads: 5,343,597 With hits: 5,343,597 Alignments: 1,587,889,089 Assig. Taxonomy: 2,289,905 Assig. SEED: 102,614 Assig. EGGNOG: 25,398 Assig. GTDB: 206,045 Assig. EC: 362,701 Assig. INTERPRO2GO: 1,008,452 MinSupport set to: 2671 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,418 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.8s) Min-supp. changes: 4,035 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.3s) Binning reads Syncing 100% (0.2s) Class. Taxonomy: 165 Class. SEED: 480 Class. EGGNOG: 1,627 Class. GTDB: 44 Class. EC: 2,372 Class. INTERPRO2GO: 8,724 Total time: 3,650s Peak memory: 49.1 of 195.3G MEGANization of CH10-11.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-11.trimmed.R2.fastq.gz... 957e57a73d8a1644c16c9c3522685e65 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-11.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-11.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.37s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.755s] Opening the output file... [0s] Loading query sequences... [96.598s] Masking queries... [26.926s] Algorithm: Double-indexed Building query histograms... [20.169s] Loading reference sequences... [31.242s] Masking reference... [30.834s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [33.499s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.179s] Building query seed array... [2.313s] Computing hash join... [5.144s] Masking low complexity seeds... [0.231s] Searching alignments... [245.126s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.628s] Building query seed array... [2.582s] Computing hash join... [5.049s] Masking low complexity seeds... [0.228s] Searching alignments... [98.579s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.85s] Building query seed array... [2.705s] Computing hash join... [5.028s] Masking low complexity seeds... [0.232s] Searching alignments... [78.943s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.003s] Building query seed array... [2.263s] Computing hash join... [4.968s] Masking low complexity seeds... [0.226s] Searching alignments... [75.572s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.099s] Building query seed array... [2.014s] Computing hash join... [4.903s] Masking low complexity seeds... [0.216s] Searching alignments... [108.141s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.886s] Building query seed array... [2.324s] Computing hash join... [4.8s] Masking low complexity seeds... [0.21s] Searching alignments... [89.726s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.043s] Building query seed array... [2.454s] Computing hash join... [4.829s] Masking low complexity seeds... [0.215s] Searching alignments... [68.383s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.158s] Building query seed array... [2.102s] Computing hash join... [4.864s] Masking low complexity seeds... [0.219s] Searching alignments... [73.379s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.674s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.614s] Sorting trace points... [1.214s] Computing alignments... [32.093s] Deallocating buffers... [0.023s] Loading trace points... [0.057s] Sorting trace points... [1.177s] Computing alignments... [32.597s] Deallocating buffers... [0.025s] Loading trace points... [0.078s] Sorting trace points... [1.217s] Computing alignments... [31.969s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.187s] Computing alignments... [32.407s] Deallocating buffers... [0.023s] Loading trace points... [0.067s] Sorting trace points... [1.164s] Computing alignments... [31.524s] Deallocating buffers... [0.025s] Loading trace points... [0.048s] Sorting trace points... [1.01s] Computing alignments... [31.75s] Deallocating buffers... [0.025s] Loading trace points... [0.817s] Sorting trace points... [1.196s] Computing alignments... [31.727s] Deallocating buffers... [0.025s] Loading trace points... [0.058s] Sorting trace points... [1.153s] Computing alignments... [33.043s] Deallocating buffers... [0.025s] Loading trace points... [0.067s] Sorting trace points... [1.211s] Computing alignments... [32.265s] Deallocating buffers... [0.025s] Loading trace points... [0.058s] Sorting trace points... [1.23s] Computing alignments... [33.012s] Deallocating buffers... [0.026s] Loading trace points... [0.075s] Sorting trace points... [1.161s] Computing alignments... [32.582s] Deallocating buffers... [0.025s] Loading trace points... [0.072s] Sorting trace points... [0.99s] Computing alignments... [32.606s] Deallocating buffers... [0.024s] Loading trace points... [0.066s] Sorting trace points... [1.171s] Computing alignments... [32.645s] Deallocating buffers... [0.021s] Loading trace points... [0.098s] Sorting trace points... [1.17s] Computing alignments... [31.725s] Deallocating buffers... [0.025s] Loading trace points... [0.053s] Sorting trace points... [0.883s] Computing alignments... [31.716s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.088s] Computing alignments... [31.558s] Deallocating buffers... [0.021s] Loading trace points... [0s] [542.156s] Deallocating reference... [0.074s] Loading reference sequences... [29.491s] Masking reference... [32.192s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.325s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.247s] Building query seed array... [2.329s] Computing hash join... [5.056s] Masking low complexity seeds... [0.226s] Searching alignments... [242.792s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.103s] Building query seed array... [2.548s] Computing hash join... [4.988s] Masking low complexity seeds... [0.228s] Searching alignments... [100.939s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.217s] Building query seed array... [2.626s] Computing hash join... [4.924s] Masking low complexity seeds... [0.223s] Searching alignments... [78.823s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.944s] Building query seed array... [2.22s] Computing hash join... [4.86s] Masking low complexity seeds... [0.222s] Searching alignments... [72.624s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.73s] Building query seed array... [2.1s] Computing hash join... [4.888s] Masking low complexity seeds... [0.215s] Searching alignments... [110.476s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.888s] Building query seed array... [2.327s] Computing hash join... [4.837s] Masking low complexity seeds... [0.209s] Searching alignments... [89.591s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.422s] Building query seed array... [2.414s] Computing hash join... [4.898s] Masking low complexity seeds... [0.211s] Searching alignments... [68.876s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.648s] Building query seed array... [2.089s] Computing hash join... [4.873s] Masking low complexity seeds... [0.208s] Searching alignments... [72.194s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.604s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.676s] Sorting trace points... [1.149s] Computing alignments... [34.624s] Deallocating buffers... [0.024s] Loading trace points... [0.057s] Sorting trace points... [1.211s] Computing alignments... [35.3s] Deallocating buffers... [0.028s] Loading trace points... [0.053s] Sorting trace points... [1.084s] Computing alignments... [34.206s] Deallocating buffers... [0.024s] Loading trace points... [0.06s] Sorting trace points... [1.16s] Computing alignments... [35.487s] Deallocating buffers... [0.029s] Loading trace points... [0.052s] Sorting trace points... [1.185s] Computing alignments... [34.393s] Deallocating buffers... [0.025s] Loading trace points... [0.071s] Sorting trace points... [0.953s] Computing alignments... [34.667s] Deallocating buffers... [0.027s] Loading trace points... [0.055s] Sorting trace points... [1.173s] Computing alignments... [33.794s] Deallocating buffers... [0.02s] Loading trace points... [0.07s] Sorting trace points... [1.207s] Computing alignments... [35.546s] Deallocating buffers... [0.03s] Loading trace points... [0.06s] Sorting trace points... [1.177s] Computing alignments... [34.395s] Deallocating buffers... [0.025s] Loading trace points... [0.059s] Sorting trace points... [1.254s] Computing alignments... [34.694s] Deallocating buffers... [0.028s] Loading trace points... [0.064s] Sorting trace points... [1.195s] Computing alignments... [35.125s] Deallocating buffers... [0.031s] Loading trace points... [0.057s] Sorting trace points... [1.213s] Computing alignments... [35.312s] Deallocating buffers... [0.022s] Loading trace points... [0.051s] Sorting trace points... [1.184s] Computing alignments... [34.883s] Deallocating buffers... [0.023s] Loading trace points... [0.064s] Sorting trace points... [1.025s] Computing alignments... [33.748s] Deallocating buffers... [0.028s] Loading trace points... [0.07s] Sorting trace points... [1.211s] Computing alignments... [33.8s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.093s] Computing alignments... [33.714s] Deallocating buffers... [0.027s] Loading trace points... [0s] [580.217s] Deallocating reference... [0.085s] Loading reference sequences... [29.493s] Masking reference... [30.901s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [33.137s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.156s] Building query seed array... [2.293s] Computing hash join... [4.936s] Masking low complexity seeds... [0.223s] Searching alignments... [243.776s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.06s] Building query seed array... [2.553s] Computing hash join... [4.965s] Masking low complexity seeds... [0.223s] Searching alignments... [96.065s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.494s] Building query seed array... [2.692s] Computing hash join... [5.041s] Masking low complexity seeds... [0.237s] Searching alignments... [79.917s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.122s] Building query seed array... [2.279s] Computing hash join... [4.931s] Masking low complexity seeds... [0.228s] Searching alignments... [75.077s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.245s] Building query seed array... [2.054s] Computing hash join... [4.936s] Masking low complexity seeds... [0.213s] Searching alignments... [107.881s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.951s] Building query seed array... [2.303s] Computing hash join... [4.845s] Masking low complexity seeds... [0.213s] Searching alignments... [89.844s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.085s] Building query seed array... [2.494s] Computing hash join... [4.873s] Masking low complexity seeds... [0.215s] Searching alignments... [69.463s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.8s] Building query seed array... [2.064s] Computing hash join... [4.81s] Masking low complexity seeds... [0.22s] Searching alignments... [72.994s] Deallocating memory... [0s] Deallocating buffers... [0.135s] Clearing query masking... [1.653s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.699s] Sorting trace points... [1.205s] Computing alignments... [34.759s] Deallocating buffers... [0.025s] Loading trace points... [0.238s] Sorting trace points... [0.92s] Computing alignments... [34.943s] Deallocating buffers... [0.027s] Loading trace points... [0.065s] Sorting trace points... [1.223s] Computing alignments... [34.055s] Deallocating buffers... [0.025s] Loading trace points... [0.106s] Sorting trace points... [1.231s] Computing alignments... [34.734s] Deallocating buffers... [0.022s] Loading trace points... [0.001s] Sorting trace points... [1.194s] Computing alignments... [34.29s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [1.204s] Computing alignments... [34.443s] Deallocating buffers... [0.021s] Loading trace points... [0.059s] Sorting trace points... [1.145s] Computing alignments... [33.098s] Deallocating buffers... [0.03s] Loading trace points... [0.073s] Sorting trace points... [1.19s] Computing alignments... [34.57s] Deallocating buffers... [0.021s] Loading trace points... [0.052s] Sorting trace points... [1.177s] Computing alignments... [33.581s] Deallocating buffers... [0.025s] Loading trace points... [0.082s] Sorting trace points... [1.194s] Computing alignments... [33.902s] Deallocating buffers... [0.025s] Loading trace points... [0.075s] Sorting trace points... [1.159s] Computing alignments... [34.486s] Deallocating buffers... [0.026s] Loading trace points... [0.1s] Sorting trace points... [1.19s] Computing alignments... [34.893s] Deallocating buffers... [0.025s] Loading trace points... [0.065s] Sorting trace points... [1.221s] Computing alignments... [34.507s] Deallocating buffers... [0.026s] Loading trace points... [0.055s] Sorting trace points... [1.241s] Computing alignments... [33.512s] Deallocating buffers... [0.022s] Loading trace points... [0.052s] Sorting trace points... [1.176s] Computing alignments... [33.652s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.18s] Computing alignments... [33.2s] Deallocating buffers... [0.021s] Loading trace points... [0s] [573.759s] Deallocating reference... [0.076s] Loading reference sequences... [29.747s] Masking reference... [30.873s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.159s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.779s] Building query seed array... [2.281s] Computing hash join... [4.971s] Masking low complexity seeds... [0.221s] Searching alignments... [249.714s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.166s] Building query seed array... [2.591s] Computing hash join... [5.036s] Masking low complexity seeds... [0.234s] Searching alignments... [98.42s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.994s] Building query seed array... [2.726s] Computing hash join... [4.991s] Masking low complexity seeds... [0.228s] Searching alignments... [79.81s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [2.213s] Computing hash join... [4.919s] Masking low complexity seeds... [0.22s] Searching alignments... [77.181s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.178s] Building query seed array... [2.018s] Computing hash join... [4.907s] Masking low complexity seeds... [0.214s] Searching alignments... [106.441s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.887s] Building query seed array... [2.28s] Computing hash join... [4.819s] Masking low complexity seeds... [0.215s] Searching alignments... [89.139s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.675s] Building query seed array... [2.505s] Computing hash join... [4.863s] Masking low complexity seeds... [0.227s] Searching alignments... [68.651s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.034s] Building query seed array... [2.1s] Computing hash join... [4.814s] Masking low complexity seeds... [0.21s] Searching alignments... [70.729s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.775s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.787s] Sorting trace points... [1.094s] Computing alignments... [36.354s] Deallocating buffers... [0.025s] Loading trace points... [0.072s] Sorting trace points... [1.176s] Computing alignments... [36.308s] Deallocating buffers... [0.019s] Loading trace points... [0.045s] Sorting trace points... [1.173s] Computing alignments... [35.421s] Deallocating buffers... [0.026s] Loading trace points... [0.075s] Sorting trace points... [1.227s] Computing alignments... [36.061s] Deallocating buffers... [0.027s] Loading trace points... [0.049s] Sorting trace points... [0.9s] Computing alignments... [35.368s] Deallocating buffers... [0.024s] Loading trace points... [0.101s] Sorting trace points... [1.15s] Computing alignments... [35.985s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [0.931s] Computing alignments... [34.798s] Deallocating buffers... [0.023s] Loading trace points... [0.057s] Sorting trace points... [0.942s] Computing alignments... [36.298s] Deallocating buffers... [0.025s] Loading trace points... [0.077s] Sorting trace points... [0.94s] Computing alignments... [35.449s] Deallocating buffers... [0.024s] Loading trace points... [0.049s] Sorting trace points... [1.219s] Computing alignments... [35.431s] Deallocating buffers... [0.022s] Loading trace points... [0.066s] Sorting trace points... [1.05s] Computing alignments... [35.801s] Deallocating buffers... [0.026s] Loading trace points... [0.081s] Sorting trace points... [1.128s] Computing alignments... [36.545s] Deallocating buffers... [0.023s] Loading trace points... [0.071s] Sorting trace points... [1.211s] Computing alignments... [35.859s] Deallocating buffers... [0.016s] Loading trace points... [0.106s] Sorting trace points... [1.154s] Computing alignments... [34.748s] Deallocating buffers... [0.022s] Loading trace points... [0.072s] Sorting trace points... [1.151s] Computing alignments... [35.049s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.147s] Computing alignments... [34.309s] Deallocating buffers... [0.018s] Loading trace points... [0s] [595.564s] Deallocating reference... [0.06s] Loading reference sequences... [31.712s] Masking reference... [30.86s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.897s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.115s] Building query seed array... [2.249s] Computing hash join... [5.064s] Masking low complexity seeds... [0.231s] Searching alignments... [242.787s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.343s] Building query seed array... [2.506s] Computing hash join... [5.005s] Masking low complexity seeds... [0.225s] Searching alignments... [98.387s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.338s] Building query seed array... [2.615s] Computing hash join... [4.937s] Masking low complexity seeds... [0.228s] Searching alignments... [79.804s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.671s] Building query seed array... [2.11s] Computing hash join... [4.981s] Masking low complexity seeds... [0.231s] Searching alignments... [75.988s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.092s] Building query seed array... [2.027s] Computing hash join... [4.905s] Masking low complexity seeds... [0.215s] Searching alignments... [108.236s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.286s] Building query seed array... [2.284s] Computing hash join... [4.879s] Masking low complexity seeds... [0.221s] Searching alignments... [89.888s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.199s] Building query seed array... [2.42s] Computing hash join... [4.911s] Masking low complexity seeds... [0.217s] Searching alignments... [68.926s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.88s] Building query seed array... [2.018s] Computing hash join... [4.826s] Masking low complexity seeds... [0.223s] Searching alignments... [73.247s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.656s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.716s] Sorting trace points... [1.275s] Computing alignments... [38.463s] Deallocating buffers... [0.034s] Loading trace points... [0.061s] Sorting trace points... [0.947s] Computing alignments... [38.132s] Deallocating buffers... [0.033s] Loading trace points... [0.055s] Sorting trace points... [1.163s] Computing alignments... [37.281s] Deallocating buffers... [0.037s] Loading trace points... [0.065s] Sorting trace points... [1.256s] Computing alignments... [37.879s] Deallocating buffers... [0.024s] Loading trace points... [0.099s] Sorting trace points... [1.192s] Computing alignments... [37.437s] Deallocating buffers... [0.028s] Loading trace points... [0.054s] Sorting trace points... [1.181s] Computing alignments... [38.039s] Deallocating buffers... [0.031s] Loading trace points... [0.095s] Sorting trace points... [1.178s] Computing alignments... [36.44s] Deallocating buffers... [0.031s] Loading trace points... [0.079s] Sorting trace points... [1.062s] Computing alignments... [37.724s] Deallocating buffers... [0.031s] Loading trace points... [0.06s] Sorting trace points... [1.191s] Computing alignments... [36.9s] Deallocating buffers... [0.036s] Loading trace points... [0.955s] Sorting trace points... [1.096s] Computing alignments... [36.794s] Deallocating buffers... [0.028s] Loading trace points... [0.001s] Sorting trace points... [1.12s] Computing alignments... [37.617s] Deallocating buffers... [0.032s] Loading trace points... [0.079s] Sorting trace points... [0.969s] Computing alignments... [38.236s] Deallocating buffers... [0.033s] Loading trace points... [0.044s] Sorting trace points... [1.22s] Computing alignments... [37.55s] Deallocating buffers... [0.037s] Loading trace points... [0.075s] Sorting trace points... [1.199s] Computing alignments... [36.401s] Deallocating buffers... [0.035s] Loading trace points... [0.09s] Sorting trace points... [0.92s] Computing alignments... [36.638s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.161s] Computing alignments... [36.308s] Deallocating buffers... [0.039s] Loading trace points... [0s] [625.152s] Deallocating reference... [0.083s] Loading reference sequences... [249.502s] Masking reference... [31.737s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.118s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.937s] Building query seed array... [2.289s] Computing hash join... [4.967s] Masking low complexity seeds... [0.223s] Searching alignments... [239.211s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.36s] Building query seed array... [2.619s] Computing hash join... [4.985s] Masking low complexity seeds... [0.222s] Searching alignments... [96.125s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.787s] Building query seed array... [2.639s] Computing hash join... [5.075s] Masking low complexity seeds... [0.231s] Searching alignments... [77.355s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.068s] Building query seed array... [2.246s] Computing hash join... [4.955s] Masking low complexity seeds... [0.222s] Searching alignments... [75.591s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.247s] Building query seed array... [2.009s] Computing hash join... [4.836s] Masking low complexity seeds... [0.222s] Searching alignments... [111.028s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.019s] Building query seed array... [2.255s] Computing hash join... [4.828s] Masking low complexity seeds... [0.215s] Searching alignments... [92.807s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.891s] Building query seed array... [2.443s] Computing hash join... [4.864s] Masking low complexity seeds... [0.222s] Searching alignments... [67.889s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.318s] Building query seed array... [2.108s] Computing hash join... [4.932s] Masking low complexity seeds... [0.211s] Searching alignments... [71.413s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [1.69s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.666s] Sorting trace points... [1.204s] Computing alignments... [31.323s] Deallocating buffers... [0.021s] Loading trace points... [0.065s] Sorting trace points... [1.199s] Computing alignments... [32.288s] Deallocating buffers... [0.026s] Loading trace points... [0.002s] Sorting trace points... [0.999s] Computing alignments... [31.297s] Deallocating buffers... [0.025s] Loading trace points... [0.058s] Sorting trace points... [1.222s] Computing alignments... [32.233s] Deallocating buffers... [0.023s] Loading trace points... [0.054s] Sorting trace points... [1.118s] Computing alignments... [31.457s] Deallocating buffers... [0.022s] Loading trace points... [0.076s] Sorting trace points... [0.902s] Computing alignments... [31.786s] Deallocating buffers... [0.023s] Loading trace points... [0.05s] Sorting trace points... [0.86s] Computing alignments... [31.119s] Deallocating buffers... [0.023s] Loading trace points... [0.089s] Sorting trace points... [1.158s] Computing alignments... [32.776s] Deallocating buffers... [0.022s] Loading trace points... [0.056s] Sorting trace points... [1.144s] Computing alignments... [31.748s] Deallocating buffers... [0.021s] Loading trace points... [0.053s] Sorting trace points... [0.915s] Computing alignments... [32.745s] Deallocating buffers... [0.024s] Loading trace points... [0.066s] Sorting trace points... [1.083s] Computing alignments... [31.99s] Deallocating buffers... [0.023s] Loading trace points... [0.062s] Sorting trace points... [1.193s] Computing alignments... [32.06s] Deallocating buffers... [0.026s] Loading trace points... [0.043s] Sorting trace points... [1.024s] Computing alignments... [31.966s] Deallocating buffers... [0.022s] Loading trace points... [0.065s] Sorting trace points... [1.221s] Computing alignments... [30.979s] Deallocating buffers... [0.025s] Loading trace points... [0.071s] Sorting trace points... [1.12s] Computing alignments... [31.171s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.15s] Computing alignments... [30.948s] Deallocating buffers... [0.025s] Loading trace points... [0s] [533.365s] Deallocating reference... [0.07s] Loading reference sequences... [32.925s] Masking reference... [31.93s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.01s] Building reference histograms... [32.553s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.056s] Building query seed array... [2.284s] Computing hash join... [4.998s] Masking low complexity seeds... [0.226s] Searching alignments... [244.447s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.591s] Building query seed array... [2.579s] Computing hash join... [5.009s] Masking low complexity seeds... [0.226s] Searching alignments... [97.388s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.421s] Building query seed array... [2.716s] Computing hash join... [4.967s] Masking low complexity seeds... [0.222s] Searching alignments... [78.137s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.91s] Building query seed array... [2.239s] Computing hash join... [4.898s] Masking low complexity seeds... [0.233s] Searching alignments... [74.729s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.194s] Building query seed array... [2.036s] Computing hash join... [4.804s] Masking low complexity seeds... [0.213s] Searching alignments... [109.298s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.275s] Building query seed array... [2.357s] Computing hash join... [4.892s] Masking low complexity seeds... [0.213s] Searching alignments... [88.224s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.218s] Building query seed array... [2.449s] Computing hash join... [4.898s] Masking low complexity seeds... [0.217s] Searching alignments... [70.048s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.881s] Building query seed array... [2.058s] Computing hash join... [4.851s] Masking low complexity seeds... [0.214s] Searching alignments... [69.81s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.692s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.568s] Sorting trace points... [1.133s] Computing alignments... [31.533s] Deallocating buffers... [0.022s] Loading trace points... [0.062s] Sorting trace points... [1.17s] Computing alignments... [32.121s] Deallocating buffers... [0.016s] Loading trace points... [0.046s] Sorting trace points... [1.176s] Computing alignments... [31.304s] Deallocating buffers... [0.02s] Loading trace points... [0.094s] Sorting trace points... [1.204s] Computing alignments... [32.03s] Deallocating buffers... [0.026s] Loading trace points... [0.054s] Sorting trace points... [1.094s] Computing alignments... [31.259s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.14s] Computing alignments... [31.698s] Deallocating buffers... [0.022s] Loading trace points... [0.083s] Sorting trace points... [1.156s] Computing alignments... [31.031s] Deallocating buffers... [0.025s] Loading trace points... [0.057s] Sorting trace points... [1.212s] Computing alignments... [32.348s] Deallocating buffers... [0.022s] Loading trace points... [0.053s] Sorting trace points... [1.137s] Computing alignments... [31.66s] Deallocating buffers... [0.022s] Loading trace points... [0.111s] Sorting trace points... [1.21s] Computing alignments... [32.639s] Deallocating buffers... [0.022s] Loading trace points... [0.079s] Sorting trace points... [0.987s] Computing alignments... [32.007s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [0.983s] Computing alignments... [31.934s] Deallocating buffers... [0.023s] Loading trace points... [0.037s] Sorting trace points... [1.183s] Computing alignments... [31.922s] Deallocating buffers... [0.023s] Loading trace points... [0.057s] Sorting trace points... [1.168s] Computing alignments... [31.041s] Deallocating buffers... [0.022s] Loading trace points... [0.096s] Sorting trace points... [1.166s] Computing alignments... [31.084s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.217s] Computing alignments... [30.745s] Deallocating buffers... [0.025s] Loading trace points... [0s] [532.686s] Deallocating reference... [0.077s] Loading reference sequences... [33.701s] Masking reference... [31.517s] Initializing dictionary... [0.078s] Initializing temporary storage... [1.257s] Building reference histograms... [32.728s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.33s] Building query seed array... [2.316s] Computing hash join... [5.15s] Masking low complexity seeds... [0.232s] Searching alignments... [243.953s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.27s] Building query seed array... [2.603s] Computing hash join... [4.976s] Masking low complexity seeds... [0.244s] Searching alignments... [98.583s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.415s] Building query seed array... [2.69s] Computing hash join... [4.94s] Masking low complexity seeds... [0.233s] Searching alignments... [79.997s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.316s] Building query seed array... [2.181s] Computing hash join... [4.981s] Masking low complexity seeds... [0.222s] Searching alignments... [73.018s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.169s] Building query seed array... [2.088s] Computing hash join... [4.845s] Masking low complexity seeds... [0.206s] Searching alignments... [107.637s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.028s] Building query seed array... [2.259s] Computing hash join... [4.885s] Masking low complexity seeds... [0.218s] Searching alignments... [88.113s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.329s] Building query seed array... [2.48s] Computing hash join... [4.841s] Masking low complexity seeds... [0.218s] Searching alignments... [69.712s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.662s] Building query seed array... [2.101s] Computing hash join... [4.814s] Masking low complexity seeds... [0.214s] Searching alignments... [72.189s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.609s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.679s] Sorting trace points... [1.212s] Computing alignments... [30.542s] Deallocating buffers... [0.025s] Loading trace points... [0.056s] Sorting trace points... [1.213s] Computing alignments... [31.195s] Deallocating buffers... [0.025s] Loading trace points... [0.076s] Sorting trace points... [1.17s] Computing alignments... [30.505s] Deallocating buffers... [0.022s] Loading trace points... [0.06s] Sorting trace points... [1.286s] Computing alignments... [31.068s] Deallocating buffers... [0.022s] Loading trace points... [0.059s] Sorting trace points... [1.097s] Computing alignments... [30.238s] Deallocating buffers... [0.023s] Loading trace points... [0.057s] Sorting trace points... [1.138s] Computing alignments... [30.462s] Deallocating buffers... [0.026s] Loading trace points... [0.059s] Sorting trace points... [0.86s] Computing alignments... [30.256s] Deallocating buffers... [0.023s] Loading trace points... [0.086s] Sorting trace points... [1.211s] Computing alignments... [31.514s] Deallocating buffers... [0.026s] Loading trace points... [0.043s] Sorting trace points... [1.135s] Computing alignments... [30.747s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.228s] Computing alignments... [31.494s] Deallocating buffers... [0.026s] Loading trace points... [0.065s] Sorting trace points... [1.035s] Computing alignments... [31.184s] Deallocating buffers... [0.019s] Loading trace points... [0.898s] Sorting trace points... [1.207s] Computing alignments... [31.01s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.012s] Computing alignments... [31.164s] Deallocating buffers... [0.023s] Loading trace points... [0.064s] Sorting trace points... [0.948s] Computing alignments... [30.211s] Deallocating buffers... [0.024s] Loading trace points... [0.08s] Sorting trace points... [1.124s] Computing alignments... [30.232s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.158s] Computing alignments... [29.837s] Deallocating buffers... [0.019s] Loading trace points... [0s] [519.047s] Deallocating reference... [0.068s] Loading reference sequences... [29.584s] Masking reference... [32.06s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [31.482s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.446s] Building query seed array... [2.273s] Computing hash join... [5.016s] Masking low complexity seeds... [0.229s] Searching alignments... [245.53s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.656s] Building query seed array... [2.52s] Computing hash join... [5.063s] Masking low complexity seeds... [0.239s] Searching alignments... [98.029s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.802s] Building query seed array... [2.664s] Computing hash join... [4.979s] Masking low complexity seeds... [0.231s] Searching alignments... [80.132s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.432s] Building query seed array... [2.183s] Computing hash join... [4.91s] Masking low complexity seeds... [0.226s] Searching alignments... [74.687s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.921s] Building query seed array... [1.949s] Computing hash join... [4.819s] Masking low complexity seeds... [0.22s] Searching alignments... [116.28s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.199s] Building query seed array... [2.365s] Computing hash join... [4.786s] Masking low complexity seeds... [0.216s] Searching alignments... [92.809s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.503s] Building query seed array... [2.406s] Computing hash join... [4.784s] Masking low complexity seeds... [0.205s] Searching alignments... [70.68s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.99s] Building query seed array... [2.108s] Computing hash join... [4.821s] Masking low complexity seeds... [0.213s] Searching alignments... [72.074s] Deallocating memory... [0s] Deallocating buffers... [0.136s] Clearing query masking... [1.699s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.661s] Sorting trace points... [1.182s] Computing alignments... [37.025s] Deallocating buffers... [0.036s] Loading trace points... [0.057s] Sorting trace points... [0.926s] Computing alignments... [36.599s] Deallocating buffers... [0.033s] Loading trace points... [0.083s] Sorting trace points... [0.949s] Computing alignments... [36.117s] Deallocating buffers... [0.031s] Loading trace points... [0.049s] Sorting trace points... [1.126s] Computing alignments... [36.896s] Deallocating buffers... [0.027s] Loading trace points... [0.112s] Sorting trace points... [1.054s] Computing alignments... [36.392s] Deallocating buffers... [0.033s] Loading trace points... [0.064s] Sorting trace points... [1.209s] Computing alignments... [36.618s] Deallocating buffers... [0.029s] Loading trace points... [0.054s] Sorting trace points... [1.091s] Computing alignments... [35.255s] Deallocating buffers... [0.03s] Loading trace points... [0.085s] Sorting trace points... [0.999s] Computing alignments... [36.76s] Deallocating buffers... [0.03s] Loading trace points... [0.068s] Sorting trace points... [1.207s] Computing alignments... [35.753s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [0.958s] Computing alignments... [35.799s] Deallocating buffers... [0.027s] Loading trace points... [0.076s] Sorting trace points... [1.169s] Computing alignments... [36.557s] Deallocating buffers... [0.031s] Loading trace points... [0.057s] Sorting trace points... [1.2s] Computing alignments... [37.231s] Deallocating buffers... [0.032s] Loading trace points... [0.001s] Sorting trace points... [1.199s] Computing alignments... [36.475s] Deallocating buffers... [0.027s] Loading trace points... [0.081s] Sorting trace points... [1.178s] Computing alignments... [35.513s] Deallocating buffers... [0.033s] Loading trace points... [0.06s] Sorting trace points... [1.196s] Computing alignments... [35.51s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.099s] Computing alignments... [34.811s] Deallocating buffers... [0.021s] Loading trace points... [0s] [605.172s] Deallocating reference... [0.068s] Loading reference sequences... [29.609s] Masking reference... [32.136s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.946s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.33s] Building query seed array... [2.304s] Computing hash join... [5.098s] Masking low complexity seeds... [0.226s] Searching alignments... [246.662s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.206s] Building query seed array... [2.641s] Computing hash join... [4.957s] Masking low complexity seeds... [0.231s] Searching alignments... [95.58s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.597s] Building query seed array... [2.676s] Computing hash join... [4.931s] Masking low complexity seeds... [0.22s] Searching alignments... [77.736s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.091s] Building query seed array... [2.172s] Computing hash join... [4.971s] Masking low complexity seeds... [0.227s] Searching alignments... [75.053s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.695s] Building query seed array... [2.018s] Computing hash join... [4.908s] Masking low complexity seeds... [0.215s] Searching alignments... [111.076s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.243s] Building query seed array... [2.313s] Computing hash join... [4.84s] Masking low complexity seeds... [0.214s] Searching alignments... [89.519s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.082s] Building query seed array... [2.43s] Computing hash join... [4.817s] Masking low complexity seeds... [0.22s] Searching alignments... [68.833s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.916s] Building query seed array... [2.093s] Computing hash join... [4.908s] Masking low complexity seeds... [0.213s] Searching alignments... [70.933s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.711s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.731s] Sorting trace points... [1.21s] Computing alignments... [29.824s] Deallocating buffers... [0.024s] Loading trace points... [0.049s] Sorting trace points... [1.151s] Computing alignments... [30.405s] Deallocating buffers... [0.021s] Loading trace points... [0.001s] Sorting trace points... [1.219s] Computing alignments... [29.826s] Deallocating buffers... [0.022s] Loading trace points... [0.054s] Sorting trace points... [1.186s] Computing alignments... [30.429s] Deallocating buffers... [0.019s] Loading trace points... [0.049s] Sorting trace points... [1.107s] Computing alignments... [29.766s] Deallocating buffers... [0.021s] Loading trace points... [0.082s] Sorting trace points... [1.167s] Computing alignments... [29.757s] Deallocating buffers... [0.024s] Loading trace points... [0.075s] Sorting trace points... [0.875s] Computing alignments... [29.77s] Deallocating buffers... [0.022s] Loading trace points... [0.061s] Sorting trace points... [1.234s] Computing alignments... [30.717s] Deallocating buffers... [0.026s] Loading trace points... [0.055s] Sorting trace points... [1.036s] Computing alignments... [29.946s] Deallocating buffers... [0.023s] Loading trace points... [0.002s] Sorting trace points... [1.173s] Computing alignments... [30.928s] Deallocating buffers... [0.015s] Loading trace points... [0.1s] Sorting trace points... [1.093s] Computing alignments... [30.466s] Deallocating buffers... [0.025s] Loading trace points... [0.055s] Sorting trace points... [1.214s] Computing alignments... [30.552s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.22s] Computing alignments... [30.336s] Deallocating buffers... [0.022s] Loading trace points... [0.054s] Sorting trace points... [1.157s] Computing alignments... [29.787s] Deallocating buffers... [0.021s] Loading trace points... [0.095s] Sorting trace points... [1.163s] Computing alignments... [29.538s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [0.984s] Computing alignments... [29.303s] Deallocating buffers... [0.022s] Loading trace points... [0s] [507.475s] Deallocating reference... [0.071s] Loading reference sequences... [31.885s] Masking reference... [31.428s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.142s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.586s] Building query seed array... [2.286s] Computing hash join... [5.007s] Masking low complexity seeds... [0.23s] Searching alignments... [243.801s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.516s] Building query seed array... [2.569s] Computing hash join... [5.031s] Masking low complexity seeds... [0.224s] Searching alignments... [97.153s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.479s] Building query seed array... [2.7s] Computing hash join... [5.008s] Masking low complexity seeds... [0.225s] Searching alignments... [82.158s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.039s] Building query seed array... [2.217s] Computing hash join... [4.928s] Masking low complexity seeds... [0.228s] Searching alignments... [74.339s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.141s] Building query seed array... [2.062s] Computing hash join... [4.836s] Masking low complexity seeds... [0.22s] Searching alignments... [109.102s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.32s] Building query seed array... [2.318s] Computing hash join... [4.749s] Masking low complexity seeds... [0.215s] Searching alignments... [88.573s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.019s] Building query seed array... [2.442s] Computing hash join... [4.815s] Masking low complexity seeds... [0.224s] Searching alignments... [67.591s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.967s] Building query seed array... [2.111s] Computing hash join... [4.829s] Masking low complexity seeds... [0.215s] Searching alignments... [72.927s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.647s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.682s] Sorting trace points... [1.212s] Computing alignments... [37.619s] Deallocating buffers... [0.029s] Loading trace points... [0.054s] Sorting trace points... [0.94s] Computing alignments... [37.745s] Deallocating buffers... [0.026s] Loading trace points... [0.056s] Sorting trace points... [1.214s] Computing alignments... [36.867s] Deallocating buffers... [0.023s] Loading trace points... [0.073s] Sorting trace points... [1.207s] Computing alignments... [36.803s] Deallocating buffers... [0.024s] Loading trace points... [0.058s] Sorting trace points... [0.945s] Computing alignments... [36.353s] Deallocating buffers... [0.025s] Loading trace points... [0.07s] Sorting trace points... [0.895s] Computing alignments... [37.397s] Deallocating buffers... [0.025s] Loading trace points... [0.057s] Sorting trace points... [1.246s] Computing alignments... [35.446s] Deallocating buffers... [0.022s] Loading trace points... [0.065s] Sorting trace points... [0.977s] Computing alignments... [37.537s] Deallocating buffers... [0.028s] Loading trace points... [0.071s] Sorting trace points... [0.921s] Computing alignments... [36.713s] Deallocating buffers... [0.025s] Loading trace points... [0.04s] Sorting trace points... [1.216s] Computing alignments... [36.942s] Deallocating buffers... [0.026s] Loading trace points... [0.097s] Sorting trace points... [1.2s] Computing alignments... [36.877s] Deallocating buffers... [0.024s] Loading trace points... [0.067s] Sorting trace points... [1.245s] Computing alignments... [37.345s] Deallocating buffers... [0.023s] Loading trace points... [0.094s] Sorting trace points... [1.022s] Computing alignments... [37.237s] Deallocating buffers... [0.026s] Loading trace points... [0.257s] Sorting trace points... [1.175s] Computing alignments... [35.755s] Deallocating buffers... [0.022s] Loading trace points... [0.071s] Sorting trace points... [0.945s] Computing alignments... [36.162s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.182s] Computing alignments... [36.221s] Deallocating buffers... [0.025s] Loading trace points... [0s] [614.895s] Deallocating reference... [0.072s] Loading reference sequences... [32.094s] Masking reference... [32.191s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.102s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.494s] Building query seed array... [2.28s] Computing hash join... [4.986s] Masking low complexity seeds... [0.223s] Searching alignments... [246.986s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.918s] Building query seed array... [2.606s] Computing hash join... [5.106s] Masking low complexity seeds... [0.227s] Searching alignments... [99.553s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.262s] Building query seed array... [2.665s] Computing hash join... [4.912s] Masking low complexity seeds... [0.233s] Searching alignments... [79.78s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.986s] Building query seed array... [2.192s] Computing hash join... [4.934s] Masking low complexity seeds... [0.228s] Searching alignments... [73.621s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.275s] Building query seed array... [2.012s] Computing hash join... [4.82s] Masking low complexity seeds... [0.214s] Searching alignments... [109.166s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.123s] Building query seed array... [2.288s] Computing hash join... [4.886s] Masking low complexity seeds... [0.215s] Searching alignments... [90.541s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.146s] Building query seed array... [2.408s] Computing hash join... [5.007s] Masking low complexity seeds... [0.214s] Searching alignments... [68.414s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.808s] Building query seed array... [2.031s] Computing hash join... [4.861s] Masking low complexity seeds... [0.213s] Searching alignments... [70.169s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.685s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.825s] Sorting trace points... [1.206s] Computing alignments... [37.979s] Deallocating buffers... [0.034s] Loading trace points... [0.07s] Sorting trace points... [0.931s] Computing alignments... [37.8s] Deallocating buffers... [0.028s] Loading trace points... [0.053s] Sorting trace points... [0.958s] Computing alignments... [36.81s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.108s] Computing alignments... [37.377s] Deallocating buffers... [0.027s] Loading trace points... [0.084s] Sorting trace points... [0.942s] Computing alignments... [37.018s] Deallocating buffers... [0.03s] Loading trace points... [0.044s] Sorting trace points... [1.188s] Computing alignments... [37.613s] Deallocating buffers... [0.03s] Loading trace points... [0.779s] Sorting trace points... [1.163s] Computing alignments... [35.995s] Deallocating buffers... [0.033s] Loading trace points... [0.091s] Sorting trace points... [1.135s] Computing alignments... [37.548s] Deallocating buffers... [0.03s] Loading trace points... [0.109s] Sorting trace points... [1.078s] Computing alignments... [36.558s] Deallocating buffers... [0.031s] Loading trace points... [0.048s] Sorting trace points... [1.252s] Computing alignments... [36.618s] Deallocating buffers... [0.033s] Loading trace points... [0.05s] Sorting trace points... [1.191s] Computing alignments... [37.188s] Deallocating buffers... [0.03s] Loading trace points... [0.072s] Sorting trace points... [1.224s] Computing alignments... [37.702s] Deallocating buffers... [0.028s] Loading trace points... [0.066s] Sorting trace points... [1.085s] Computing alignments... [37.51s] Deallocating buffers... [0.027s] Loading trace points... [0.077s] Sorting trace points... [1.214s] Computing alignments... [36.108s] Deallocating buffers... [0.031s] Loading trace points... [0.062s] Sorting trace points... [1.239s] Computing alignments... [36.008s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.196s] Computing alignments... [35.904s] Deallocating buffers... [0.033s] Loading trace points... [0s] [618.869s] Deallocating reference... [0.076s] Loading reference sequences... [30.169s] Masking reference... [30.86s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.784s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.048s] Building query seed array... [2.302s] Computing hash join... [5.043s] Masking low complexity seeds... [0.225s] Searching alignments... [243.497s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.629s] Building query seed array... [2.61s] Computing hash join... [5.023s] Masking low complexity seeds... [0.228s] Searching alignments... [97.571s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.123s] Building query seed array... [2.657s] Computing hash join... [4.92s] Masking low complexity seeds... [0.232s] Searching alignments... [79.303s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.984s] Building query seed array... [2.231s] Computing hash join... [4.931s] Masking low complexity seeds... [0.218s] Searching alignments... [73.561s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.935s] Building query seed array... [2.125s] Computing hash join... [4.847s] Masking low complexity seeds... [0.221s] Searching alignments... [114.081s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.278s] Building query seed array... [2.362s] Computing hash join... [4.877s] Masking low complexity seeds... [0.217s] Searching alignments... [89.158s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.887s] Building query seed array... [2.398s] Computing hash join... [4.912s] Masking low complexity seeds... [0.222s] Searching alignments... [68.435s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.943s] Building query seed array... [2.049s] Computing hash join... [4.889s] Masking low complexity seeds... [0.218s] Searching alignments... [70.824s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.604s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.691s] Sorting trace points... [1.158s] Computing alignments... [35.956s] Deallocating buffers... [0.022s] Loading trace points... [0.047s] Sorting trace points... [1.207s] Computing alignments... [36.235s] Deallocating buffers... [0.024s] Loading trace points... [0.045s] Sorting trace points... [1.17s] Computing alignments... [35.341s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [0.935s] Computing alignments... [35.645s] Deallocating buffers... [0.026s] Loading trace points... [0.062s] Sorting trace points... [1.084s] Computing alignments... [34.936s] Deallocating buffers... [0.025s] Loading trace points... [0.068s] Sorting trace points... [1.134s] Computing alignments... [35.66s] Deallocating buffers... [0.023s] Loading trace points... [0.078s] Sorting trace points... [1.202s] Computing alignments... [34.113s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.263s] Computing alignments... [35.706s] Deallocating buffers... [0.023s] Loading trace points... [0.065s] Sorting trace points... [1.067s] Computing alignments... [35.094s] Deallocating buffers... [0.023s] Loading trace points... [0.042s] Sorting trace points... [1.249s] Computing alignments... [35.301s] Deallocating buffers... [0.023s] Loading trace points... [0.071s] Sorting trace points... [1.074s] Computing alignments... [35.717s] Deallocating buffers... [0.023s] Loading trace points... [0.049s] Sorting trace points... [1.252s] Computing alignments... [35.877s] Deallocating buffers... [0.026s] Loading trace points... [0.064s] Sorting trace points... [1.192s] Computing alignments... [35.655s] Deallocating buffers... [0.022s] Loading trace points... [0.065s] Sorting trace points... [1.179s] Computing alignments... [34.731s] Deallocating buffers... [0.025s] Loading trace points... [0.074s] Sorting trace points... [1.153s] Computing alignments... [34.447s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.187s] Computing alignments... [34.526s] Deallocating buffers... [0.024s] Loading trace points... [0s] [591.488s] Deallocating reference... [0.074s] Loading reference sequences... [23.896s] Masking reference... [25.692s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [26.645s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.502s] Building query seed array... [2.263s] Computing hash join... [4.138s] Masking low complexity seeds... [0.221s] Searching alignments... [194.192s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.024s] Building query seed array... [2.525s] Computing hash join... [4.145s] Masking low complexity seeds... [0.209s] Searching alignments... [78.147s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.086s] Building query seed array... [2.712s] Computing hash join... [4.159s] Masking low complexity seeds... [0.219s] Searching alignments... [65.42s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.478s] Building query seed array... [2.205s] Computing hash join... [4.158s] Masking low complexity seeds... [0.219s] Searching alignments... [59.331s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.369s] Building query seed array... [2.057s] Computing hash join... [4.06s] Masking low complexity seeds... [0.205s] Searching alignments... [85.497s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.149s] Building query seed array... [2.316s] Computing hash join... [4.003s] Masking low complexity seeds... [0.202s] Searching alignments... [75.002s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.791s] Building query seed array... [2.459s] Computing hash join... [4.003s] Masking low complexity seeds... [0.204s] Searching alignments... [56.099s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.927s] Building query seed array... [2.067s] Computing hash join... [4.008s] Masking low complexity seeds... [0.196s] Searching alignments... [58.134s] Deallocating memory... [0s] Deallocating buffers... [0.112s] Clearing query masking... [1.626s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.17s] Sorting trace points... [2.029s] Computing alignments... [54.99s] Deallocating buffers... [0.034s] Loading trace points... [0.125s] Sorting trace points... [1.837s] Computing alignments... [54.974s] Deallocating buffers... [0.029s] Loading trace points... [0.127s] Sorting trace points... [2.011s] Computing alignments... [54.45s] Deallocating buffers... [0.039s] Loading trace points... [0.087s] Sorting trace points... [1.576s] Computing alignments... [54.321s] Deallocating buffers... [0.037s] Loading trace points... [0.152s] Sorting trace points... [1.683s] Computing alignments... [54.23s] Deallocating buffers... [0.029s] Loading trace points... [0.066s] Sorting trace points... [1.977s] Computing alignments... [54.752s] Deallocating buffers... [0.035s] Loading trace points... [0.154s] Sorting trace points... [1.913s] Computing alignments... [53.742s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.446s] Computing alignments... [52.546s] Deallocating buffers... [0.037s] Loading trace points... [0s] [460.794s] Deallocating reference... [0.062s] Loading reference sequences... [0.072s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1854.63s] [1854.63s] Deallocating queries... [0.07s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.162s] [4.12s] Closing the database... [0s] Cleaning up... [0s] Total time = 25111.4s Reported 1924524122 pairwise alignments, 1924524122 HSPs. 5430503 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH10-11.trimmed.R2.fastq.gz complete: CH10-11.trimmed.R2.blastx.meganized.daa Now MEGANizing CH10-11.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH10-11.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (174.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,470.5s) Total reads: 5,430,503 With hits: 5,430,503 Alignments: 1,596,330,911 Assig. Taxonomy: 2,296,371 Assig. SEED: 103,272 Assig. EGGNOG: 25,595 Assig. GTDB: 207,859 Assig. EC: 363,732 Assig. INTERPRO2GO: 1,010,553 MinSupport set to: 2715 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,343 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12.3s) Min-supp. changes: 4,065 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7.0s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 160 Class. SEED: 483 Class. EGGNOG: 1,633 Class. GTDB: 45 Class. EC: 2,395 Class. INTERPRO2GO: 8,746 Total time: 3,674s Peak memory: 33.3 of 195.3G MEGANization of CH10-11.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksums for 20230316-mmag-diamond-meganizer-RNAseq.sh: 1859b04f66d924735f34290be5bfbc85 20230316-mmag-diamond-meganizer-RNAseq.sh Generating MD5 checksums for CH07-04.trimmed.R1.blastx.meganized.daa: fbc88fc2d5294b48a6f95e36cd18749a CH07-04.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH07-04.trimmed.R2.blastx.meganized.daa: 7f9b2f4d381a0e2d8c6cf1fed29b111e CH07-04.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for CH07-06.trimmed.R1.blastx.meganized.daa: 58fb37a4318fa24e11973bbecc738f2c CH07-06.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH07-06.trimmed.R2.blastx.meganized.daa: f16e101aee88ee4dbb266524bf057b33 CH07-06.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for CH07-08.trimmed.R1.blastx.meganized.daa: 8f1ccc1acf69eb131fcdb2b9a5589cad CH07-08.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH07-08.trimmed.R2.blastx.meganized.daa: c950134f0975623f99a0c7be6dc80129 CH07-08.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for CH07-11.trimmed.R1.blastx.meganized.daa: 3e546f482ab9c0b754f8b5138b153c30 CH07-11.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH07-11.trimmed.R2.blastx.meganized.daa: 0b1ee907aa70051f4868d83a8bedf442 CH07-11.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for CH07-24.trimmed.R1.blastx.meganized.daa: cce94a417a5f52bc35f747b34c8f38cb CH07-24.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH07-24.trimmed.R2.blastx.meganized.daa: 643b6a4a5338c68f5e7d83882f312e14 CH07-24.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for CH09-02.trimmed.R1.blastx.meganized.daa: f18701d768fd7b88ee17f34fde6af332 CH09-02.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH09-02.trimmed.R2.blastx.meganized.daa: 704d7e770b98a8640b6380a31e87b2d8 CH09-02.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for CH09-13.trimmed.R1.blastx.meganized.daa: f17ffe982e1cfab2990cdbbd262437f0 CH09-13.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH09-13.trimmed.R2.blastx.meganized.daa: fd3905e5c4b3ef8a4a8de2cee1d7ffea CH09-13.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for CH09-28.trimmed.R1.blastx.meganized.daa: 9878ae6dc902124f6e20b0047549f100 CH09-28.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH09-28.trimmed.R2.blastx.meganized.daa: bd5079f578dc0b03ef8bdbeb12e013b4 CH09-28.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for CH10-08.trimmed.R1.blastx.meganized.daa: 2591f18e401dc13003b3c6e74f40b726 CH10-08.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH10-08.trimmed.R2.blastx.meganized.daa: 171de114cdc7e656004da6fc88ce296e CH10-08.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for CH10-11.trimmed.R1.blastx.meganized.daa: 771d532b1ff7d71d108aae16cfc0fc0a CH10-11.trimmed.R1.blastx.meganized.daa Generating MD5 checksums for CH10-11.trimmed.R2.blastx.meganized.daa: 83eefbb73c44b62fce38b6767fdc6a7d CH10-11.trimmed.R2.blastx.meganized.daa Generating MD5 checksums for input_fastqs-checksums.md5: 023879600d59faaa1f6a08371a83992b input_fastqs-checksums.md5 Generating MD5 checksums for slurm-4511835.out: 6b5c627d066fa645f9ef8b92cd5252de slurm-4511835.out Generating MD5 checksums for slurm-4546456.out: a0aef5b0916e53215b67ca0bc1515b18 slurm-4546456.out Logging program options... Finished logging programs options. Logging system /gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/mpi/intel64/bin:/gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/bin/intel64:/gscratch/sw/intel-201703/debugger_2017/gdb/intel64_mic/bin:/sw/intel-python-2017.2.045/intelpython3/bin:/gscratch/srlab/programs/anaconda3/condabin:/usr/lusers/samwhite/bin:/gscratch/srlab/programs/cmake-3.12.1/bin:/usr/lusers/samwhite/perl5/bin:/sw/local/bin:/usr/lib64/qt-3.3/bin:/sw/modules-1.775/bin:/usr/lpp/mmfs/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/gscratch/srlab/programs/bowtie2-2.3.5.1-linux-x86_64:/gscratch/srlab/programs/Augustus-3.3.2/bin:/gscratch/srlab/programs/FastQC:/gscratch/srlab/programs/jellyfish-2.3.0/bin:/gscratch/srlab/programs/salmon-1.1.0_linux_x86_64/bin:/gscratch/srlab/programs/samtools-1.10:/gscratch/srlab/programs/pcre2-10.37:/gscratch/srlab/programs/R-4.1.1/bin:/gscratch/srlab/programs/tree-1.8.0:/gscratch/srlab/programs/graphviz-2.40.1/bin:/usr/lusers/samwhite/bin:/usr/lusers/samwhite/edirect... Finished logging system /gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/mpi/intel64/bin:/gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/bin/intel64:/gscratch/sw/intel-201703/debugger_2017/gdb/intel64_mic/bin:/sw/intel-python-2017.2.045/intelpython3/bin:/gscratch/srlab/programs/anaconda3/condabin:/usr/lusers/samwhite/bin:/gscratch/srlab/programs/cmake-3.12.1/bin:/usr/lusers/samwhite/perl5/bin:/sw/local/bin:/usr/lib64/qt-3.3/bin:/sw/modules-1.775/bin:/usr/lpp/mmfs/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/gscratch/srlab/programs/bowtie2-2.3.5.1-linux-x86_64:/gscratch/srlab/programs/Augustus-3.3.2/bin:/gscratch/srlab/programs/FastQC:/gscratch/srlab/programs/jellyfish-2.3.0/bin:/gscratch/srlab/programs/salmon-1.1.0_linux_x86_64/bin:/gscratch/srlab/programs/samtools-1.10:/gscratch/srlab/programs/pcre2-10.37:/gscratch/srlab/programs/R-4.1.1/bin:/gscratch/srlab/programs/tree-1.8.0:/gscratch/srlab/programs/graphviz-2.40.1/bin:/usr/lusers/samwhite/bin:/usr/lusers/samwhite/edirect.