Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-06.trimmed.R1.fastq.gz... 6837f0ad41891a48a82e67d38c430356 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-06.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-06.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.351s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.714s] Opening the output file... [0s] Loading query sequences... [67.769s] Masking queries... [17.465s] Algorithm: Double-indexed Building query histograms... [15.009s] Loading reference sequences... [29.131s] Masking reference... [32.106s] Initializing dictionary... [0.081s] Initializing temporary storage... [0.014s] Building reference histograms... [32.578s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.132s] Building query seed array... [1.53s] Computing hash join... [4.946s] Masking low complexity seeds... [0.167s] Searching alignments... [414.495s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.276s] Building query seed array... [1.773s] Computing hash join... [5.011s] Masking low complexity seeds... [0.173s] Searching alignments... [172.838s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.115s] Building query seed array... [1.885s] Computing hash join... [5.104s] Masking low complexity seeds... [0.181s] Searching alignments... [133.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [1.513s] Computing hash join... [4.798s] Masking low complexity seeds... [0.172s] Searching alignments... [128.349s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.388s] Building query seed array... [1.417s] Computing hash join... [4.629s] Masking low complexity seeds... [0.164s] Searching alignments... [184.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.319s] Building query seed array... [1.582s] Computing hash join... [4.99s] Masking low complexity seeds... [0.166s] Searching alignments... [146.139s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.856s] Building query seed array... [1.649s] Computing hash join... [4.581s] Masking low complexity seeds... [0.156s] Searching alignments... [108.425s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.085s] Building query seed array... [1.437s] Computing hash join... [4.62s] Masking low complexity seeds... [0.163s] Searching alignments... [113.593s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.067s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [9.449s] Sorting trace points... [1.622s] Computing alignments... [48.924s] Deallocating buffers... [0.032s] Loading trace points... [0.886s] Sorting trace points... [1.409s] Computing alignments... [49.34s] Deallocating buffers... [0.032s] Loading trace points... [0.053s] Sorting trace points... [1.671s] Computing alignments... [50.63s] Deallocating buffers... [0.028s] Loading trace points... [0.05s] Sorting trace points... [1.574s] Computing alignments... [53.347s] Deallocating buffers... [0.035s] Loading trace points... [0.05s] Sorting trace points... [1.223s] Computing alignments... [51.419s] Deallocating buffers... [0.036s] Loading trace points... [0.062s] Sorting trace points... [1.702s] Computing alignments... [50.987s] Deallocating buffers... [0.03s] Loading trace points... [0.081s] Sorting trace points... [1.732s] Computing alignments... [51.456s] Deallocating buffers... [0.025s] Loading trace points... [0.089s] Sorting trace points... [1.817s] Computing alignments... [51.86s] Deallocating buffers... [0.031s] Loading trace points... [0.001s] Sorting trace points... [1.615s] Computing alignments... [49.854s] Deallocating buffers... [0.02s] Loading trace points... [0.047s] Sorting trace points... [1.271s] Computing alignments... [52.52s] Deallocating buffers... [0.023s] Loading trace points... [0.065s] Sorting trace points... [1.306s] Computing alignments... [51.076s] Deallocating buffers... [0.037s] Loading trace points... [0.05s] Sorting trace points... [1.578s] Computing alignments... [53.554s] Deallocating buffers... [0.036s] Loading trace points... [0.072s] Sorting trace points... [1.763s] Computing alignments... [51.169s] Deallocating buffers... [0.03s] Loading trace points... [0.061s] Sorting trace points... [1.716s] Computing alignments... [50.519s] Deallocating buffers... [0.036s] Loading trace points... [0.108s] Sorting trace points... [1.738s] Computing alignments... [50.389s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.72s] Computing alignments... [51.772s] Deallocating buffers... [0.043s] Loading trace points... [0s] [856.701s] Deallocating reference... [0.101s] Loading reference sequences... [30.728s] Masking reference... [30.998s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.375s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.904s] Building query seed array... [1.617s] Computing hash join... [5.321s] Masking low complexity seeds... [0.186s] Searching alignments... [404.09s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.474s] Building query seed array... [2.245s] Computing hash join... [4.966s] Masking low complexity seeds... [0.175s] Searching alignments... [167.977s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.427s] Building query seed array... [1.889s] Computing hash join... [5.22s] Masking low complexity seeds... [0.172s] Searching alignments... [128.569s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.437s] Building query seed array... [1.703s] Computing hash join... [4.698s] Masking low complexity seeds... [0.163s] Searching alignments... [129.071s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.811s] Building query seed array... [1.462s] Computing hash join... [4.557s] Masking low complexity seeds... [0.151s] Searching alignments... [185.535s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.457s] Building query seed array... [1.693s] Computing hash join... [4.645s] Masking low complexity seeds... [0.159s] Searching alignments... [148.358s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.168s] Building query seed array... [1.88s] Computing hash join... [4.532s] Masking low complexity seeds... [0.156s] Searching alignments... [107.656s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.073s] Building query seed array... [1.558s] Computing hash join... [4.633s] Masking low complexity seeds... [0.163s] Searching alignments... [111.635s] Deallocating memory... [0s] Deallocating buffers... [0.604s] Clearing query masking... [1.015s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [8.838s] Sorting trace points... [1.632s] Computing alignments... [50.846s] Deallocating buffers... [0.074s] Loading trace points... [0.044s] Sorting trace points... [1.619s] Computing alignments... [53.348s] Deallocating buffers... [0.054s] Loading trace points... [0.001s] Sorting trace points... [1.697s] Computing alignments... [53.086s] Deallocating buffers... [0.064s] Loading trace points... [0.09s] Sorting trace points... [1.778s] Computing alignments... [55.395s] Deallocating buffers... [0.058s] Loading trace points... [0.07s] Sorting trace points... [1.634s] Computing alignments... [53.003s] Deallocating buffers... [0.066s] Loading trace points... [0.063s] Sorting trace points... [1.484s] Computing alignments... [52.45s] Deallocating buffers... [0.056s] Loading trace points... [0.034s] Sorting trace points... [1.714s] Computing alignments... [53.265s] Deallocating buffers... [0.062s] Loading trace points... [0.062s] Sorting trace points... [1.639s] Computing alignments... [53.527s] Deallocating buffers... [0.062s] Loading trace points... [0.068s] Sorting trace points... [1.646s] Computing alignments... [51.899s] Deallocating buffers... [0.06s] Loading trace points... [0.071s] Sorting trace points... [1.601s] Computing alignments... [54.505s] Deallocating buffers... [0.072s] Loading trace points... [0.058s] Sorting trace points... [1.695s] Computing alignments... [52.648s] Deallocating buffers... [0.06s] Loading trace points... [0.063s] Sorting trace points... [1.679s] Computing alignments... [56.053s] Deallocating buffers... [0.067s] Loading trace points... [0.099s] Sorting trace points... [1.338s] Computing alignments... [53.318s] Deallocating buffers... [0.066s] Loading trace points... [0.047s] Sorting trace points... [1.301s] Computing alignments... [51.76s] Deallocating buffers... [0.068s] Loading trace points... [0.059s] Sorting trace points... [1.267s] Computing alignments... [52.839s] Deallocating buffers... [0.061s] Loading trace points... [0s] Sorting trace points... [1.719s] Computing alignments... [54.314s] Deallocating buffers... [0.051s] Loading trace points... [0s] [888.471s] Deallocating reference... [0.068s] Loading reference sequences... [30.519s] Masking reference... [30.889s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.589s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.229s] Building query seed array... [1.564s] Computing hash join... [5.258s] Masking low complexity seeds... [0.189s] Searching alignments... [408.69s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.186s] Building query seed array... [2.203s] Computing hash join... [4.983s] Masking low complexity seeds... [0.179s] Searching alignments... [169.817s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.864s] Building query seed array... [1.956s] Computing hash join... [5.049s] Masking low complexity seeds... [0.174s] Searching alignments... [129.734s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.184s] Building query seed array... [1.622s] Computing hash join... [4.799s] Masking low complexity seeds... [0.171s] Searching alignments... [129.47s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.286s] Building query seed array... [1.545s] Computing hash join... [4.635s] Masking low complexity seeds... [0.162s] Searching alignments... [190.716s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.99s] Building query seed array... [1.784s] Computing hash join... [5.11s] Masking low complexity seeds... [0.169s] Searching alignments... [149.13s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.272s] Building query seed array... [1.775s] Computing hash join... [5.024s] Masking low complexity seeds... [0.162s] Searching alignments... [109.111s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.808s] Building query seed array... [1.518s] Computing hash join... [4.635s] Masking low complexity seeds... [0.167s] Searching alignments... [111.331s] Deallocating memory... [0s] Deallocating buffers... [0.502s] Clearing query masking... [1.022s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.471s] Sorting trace points... [1.61s] Computing alignments... [50.193s] Deallocating buffers... [0.07s] Loading trace points... [0.09s] Sorting trace points... [1.672s] Computing alignments... [52.35s] Deallocating buffers... [0.066s] Loading trace points... [0.195s] Sorting trace points... [1.239s] Computing alignments... [52.932s] Deallocating buffers... [0.07s] Loading trace points... [0.064s] Sorting trace points... [1.777s] Computing alignments... [54.95s] Deallocating buffers... [0.047s] Loading trace points... [0.075s] Sorting trace points... [1.516s] Computing alignments... [52.853s] Deallocating buffers... [0.06s] Loading trace points... [0.086s] Sorting trace points... [1.633s] Computing alignments... [52.379s] Deallocating buffers... [0.063s] Loading trace points... [0.002s] Sorting trace points... [1.76s] Computing alignments... [52.905s] Deallocating buffers... [0.064s] Loading trace points... [0.785s] Sorting trace points... [1.73s] Computing alignments... [53.265s] Deallocating buffers... [0.06s] Loading trace points... [0.063s] Sorting trace points... [1.247s] Computing alignments... [51.541s] Deallocating buffers... [0.06s] Loading trace points... [0.042s] Sorting trace points... [1.722s] Computing alignments... [53.997s] Deallocating buffers... [0.059s] Loading trace points... [0.071s] Sorting trace points... [1.806s] Computing alignments... [52.422s] Deallocating buffers... [0.065s] Loading trace points... [0.068s] Sorting trace points... [1.783s] Computing alignments... [55.781s] Deallocating buffers... [0.055s] Loading trace points... [0.055s] Sorting trace points... [1.632s] Computing alignments... [53.902s] Deallocating buffers... [0.06s] Loading trace points... [0.089s] Sorting trace points... [1.684s] Computing alignments... [51.771s] Deallocating buffers... [0.044s] Loading trace points... [0.042s] Sorting trace points... [1.445s] Computing alignments... [51.663s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [1.733s] Computing alignments... [53.832s] Deallocating buffers... [0.06s] Loading trace points... [0s] [885.016s] Deallocating reference... [0.084s] Loading reference sequences... [29.182s] Masking reference... [30.859s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.467s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.301s] Building query seed array... [1.592s] Computing hash join... [5.4s] Masking low complexity seeds... [0.178s] Searching alignments... [415.987s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.318s] Building query seed array... [1.984s] Computing hash join... [5.423s] Masking low complexity seeds... [0.185s] Searching alignments... [171.354s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.756s] Building query seed array... [1.921s] Computing hash join... [4.768s] Masking low complexity seeds... [0.164s] Searching alignments... [129.634s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.861s] Building query seed array... [1.677s] Computing hash join... [5.434s] Masking low complexity seeds... [0.192s] Searching alignments... [127.802s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.215s] Building query seed array... [1.544s] Computing hash join... [4.681s] Masking low complexity seeds... [0.155s] Searching alignments... [187.65s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.36s] Building query seed array... [1.715s] Computing hash join... [4.594s] Masking low complexity seeds... [0.157s] Searching alignments... [149.304s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.462s] Building query seed array... [1.79s] Computing hash join... [4.738s] Masking low complexity seeds... [0.165s] Searching alignments... [112.032s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.335s] Building query seed array... [1.551s] Computing hash join... [4.594s] Masking low complexity seeds... [0.166s] Searching alignments... [111.998s] Deallocating memory... [0s] Deallocating buffers... [0.853s] Clearing query masking... [1.016s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.304s] Sorting trace points... [1.463s] Computing alignments... [48.987s] Deallocating buffers... [0.033s] Loading trace points... [0.061s] Sorting trace points... [1.623s] Computing alignments... [50.956s] Deallocating buffers... [0.033s] Loading trace points... [0.046s] Sorting trace points... [1.717s] Computing alignments... [51.416s] Deallocating buffers... [0.031s] Loading trace points... [0.045s] Sorting trace points... [1.316s] Computing alignments... [53.636s] Deallocating buffers... [0.034s] Loading trace points... [0.002s] Sorting trace points... [1.545s] Computing alignments... [51.634s] Deallocating buffers... [0.031s] Loading trace points... [0.064s] Sorting trace points... [1.23s] Computing alignments... [51.144s] Deallocating buffers... [0.036s] Loading trace points... [0.065s] Sorting trace points... [1.659s] Computing alignments... [51.792s] Deallocating buffers... [0.022s] Loading trace points... [0.065s] Sorting trace points... [1.712s] Computing alignments... [51.962s] Deallocating buffers... [0.031s] Loading trace points... [0.097s] Sorting trace points... [1.56s] Computing alignments... [50.291s] Deallocating buffers... [0.037s] Loading trace points... [0.124s] Sorting trace points... [1.729s] Computing alignments... [53.141s] Deallocating buffers... [0.033s] Loading trace points... [0.068s] Sorting trace points... [1.798s] Computing alignments... [51.216s] Deallocating buffers... [0.043s] Loading trace points... [0s] Sorting trace points... [1.827s] Computing alignments... [54.292s] Deallocating buffers... [0.041s] Loading trace points... [0.114s] Sorting trace points... [1.345s] Computing alignments... [52.042s] Deallocating buffers... [0.039s] Loading trace points... [0.057s] Sorting trace points... [1.694s] Computing alignments... [50.638s] Deallocating buffers... [0.035s] Loading trace points... [0.073s] Sorting trace points... [1.269s] Computing alignments... [50.783s] Deallocating buffers... [0.045s] Loading trace points... [0s] Sorting trace points... [1.518s] Computing alignments... [52.525s] Deallocating buffers... [0.032s] Loading trace points... [0s] [862.36s] Deallocating reference... [0.08s] Loading reference sequences... [29.39s] Masking reference... [32.143s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [31.708s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.476s] Building query seed array... [1.552s] Computing hash join... [4.812s] Masking low complexity seeds... [0.17s] Searching alignments... [406.343s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.323s] Building query seed array... [1.736s] Computing hash join... [5.117s] Masking low complexity seeds... [0.171s] Searching alignments... [172.433s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.45s] Building query seed array... [1.85s] Computing hash join... [4.723s] Masking low complexity seeds... [0.168s] Searching alignments... [130.752s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.927s] Building query seed array... [1.473s] Computing hash join... [5.034s] Masking low complexity seeds... [0.171s] Searching alignments... [127.016s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.085s] Building query seed array... [1.395s] Computing hash join... [4.631s] Masking low complexity seeds... [0.163s] Searching alignments... [185.91s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.093s] Building query seed array... [1.629s] Computing hash join... [4.753s] Masking low complexity seeds... [0.167s] Searching alignments... [146.563s] Deallocating memory... [0.003s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.423s] Building query seed array... [1.682s] Computing hash join... [5.008s] Masking low complexity seeds... [0.165s] Searching alignments... [108.246s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.153s] Building query seed array... [1.367s] Computing hash join... [4.632s] Masking low complexity seeds... [0.163s] Searching alignments... [112.714s] Deallocating memory... [0s] Deallocating buffers... [0.153s] Clearing query masking... [1.032s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [8.731s] Sorting trace points... [1.599s] Computing alignments... [51.788s] Deallocating buffers... [0.053s] Loading trace points... [0.05s] Sorting trace points... [1.265s] Computing alignments... [54.193s] Deallocating buffers... [0.045s] Loading trace points... [0.049s] Sorting trace points... [1.644s] Computing alignments... [54.379s] Deallocating buffers... [0.058s] Loading trace points... [0.002s] Sorting trace points... [1.796s] Computing alignments... [57.155s] Deallocating buffers... [0.051s] Loading trace points... [0.092s] Sorting trace points... [1.324s] Computing alignments... [54.779s] Deallocating buffers... [0.045s] Loading trace points... [0.086s] Sorting trace points... [1.706s] Computing alignments... [54.214s] Deallocating buffers... [0.054s] Loading trace points... [1.023s] Sorting trace points... [1.731s] Computing alignments... [54.676s] Deallocating buffers... [0.043s] Loading trace points... [0.062s] Sorting trace points... [1.679s] Computing alignments... [54.626s] Deallocating buffers... [0.05s] Loading trace points... [0.062s] Sorting trace points... [1.611s] Computing alignments... [53.462s] Deallocating buffers... [0.045s] Loading trace points... [0.074s] Sorting trace points... [1.404s] Computing alignments... [56.034s] Deallocating buffers... [0.037s] Loading trace points... [0.059s] Sorting trace points... [1.582s] Computing alignments... [53.842s] Deallocating buffers... [0.052s] Loading trace points... [0.066s] Sorting trace points... [1.616s] Computing alignments... [57.809s] Deallocating buffers... [0.06s] Loading trace points... [0.065s] Sorting trace points... [1.507s] Computing alignments... [55.648s] Deallocating buffers... [0.047s] Loading trace points... [0.042s] Sorting trace points... [1.682s] Computing alignments... [53.597s] Deallocating buffers... [0.057s] Loading trace points... [0.078s] Sorting trace points... [1.463s] Computing alignments... [53.527s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [1.402s] Computing alignments... [55.758s] Deallocating buffers... [0.061s] Loading trace points... [0s] [911.958s] Deallocating reference... [0.092s] Loading reference sequences... [249.528s] Masking reference... [30.955s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.235s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.437s] Building query seed array... [1.544s] Computing hash join... [4.951s] Masking low complexity seeds... [0.168s] Searching alignments... [401.326s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.35s] Building query seed array... [1.778s] Computing hash join... [5.11s] Masking low complexity seeds... [0.175s] Searching alignments... [169.129s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.436s] Building query seed array... [1.875s] Computing hash join... [4.894s] Masking low complexity seeds... [0.163s] Searching alignments... [130.458s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.269s] Building query seed array... [1.543s] Computing hash join... [4.665s] Masking low complexity seeds... [0.168s] Searching alignments... [124.683s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.024s] Building query seed array... [1.387s] Computing hash join... [4.553s] Masking low complexity seeds... [0.155s] Searching alignments... [189.369s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.265s] Building query seed array... [1.533s] Computing hash join... [5.028s] Masking low complexity seeds... [0.164s] Searching alignments... [145.04s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.277s] Building query seed array... [1.695s] Computing hash join... [4.607s] Masking low complexity seeds... [0.153s] Searching alignments... [107.851s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.347s] Building query seed array... [1.409s] Computing hash join... [4.616s] Masking low complexity seeds... [0.17s] Searching alignments... [111.58s] Deallocating memory... [0s] Deallocating buffers... [0.158s] Clearing query masking... [1.108s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.757s] Sorting trace points... [1.625s] Computing alignments... [50.697s] Deallocating buffers... [0.029s] Loading trace points... [0.065s] Sorting trace points... [1.676s] Computing alignments... [52.273s] Deallocating buffers... [0.029s] Loading trace points... [0.234s] Sorting trace points... [1.342s] Computing alignments... [53.635s] Deallocating buffers... [0.039s] Loading trace points... [0.091s] Sorting trace points... [1.779s] Computing alignments... [55.394s] Deallocating buffers... [0.033s] Loading trace points... [0.077s] Sorting trace points... [1.683s] Computing alignments... [53.382s] Deallocating buffers... [0.033s] Loading trace points... [0.042s] Sorting trace points... [1.654s] Computing alignments... [52.804s] Deallocating buffers... [0.036s] Loading trace points... [0.041s] Sorting trace points... [1.807s] Computing alignments... [53.681s] Deallocating buffers... [0.02s] Loading trace points... [0.055s] Sorting trace points... [1.722s] Computing alignments... [53.625s] Deallocating buffers... [0.034s] Loading trace points... [0.068s] Sorting trace points... [1.667s] Computing alignments... [51.842s] Deallocating buffers... [0.022s] Loading trace points... [0.103s] Sorting trace points... [1.719s] Computing alignments... [54.28s] Deallocating buffers... [0.032s] Loading trace points... [0.048s] Sorting trace points... [1.724s] Computing alignments... [52.831s] Deallocating buffers... [0.042s] Loading trace points... [0.057s] Sorting trace points... [1.709s] Computing alignments... [56.577s] Deallocating buffers... [0.043s] Loading trace points... [0.113s] Sorting trace points... [1.585s] Computing alignments... [53.523s] Deallocating buffers... [0.03s] Loading trace points... [0.094s] Sorting trace points... [1.783s] Computing alignments... [51.893s] Deallocating buffers... [0.032s] Loading trace points... [0.056s] Sorting trace points... [1.713s] Computing alignments... [52.293s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.736s] Computing alignments... [54.683s] Deallocating buffers... [0.029s] Loading trace points... [0s] [890.867s] Deallocating reference... [0.06s] Loading reference sequences... [30.718s] Masking reference... [32.232s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.973s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.527s] Building query seed array... [1.562s] Computing hash join... [5.054s] Masking low complexity seeds... [0.168s] Searching alignments... [408.468s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.886s] Building query seed array... [1.793s] Computing hash join... [4.831s] Masking low complexity seeds... [0.166s] Searching alignments... [169.635s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.542s] Building query seed array... [1.8s] Computing hash join... [5.039s] Masking low complexity seeds... [0.17s] Searching alignments... [131.81s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.028s] Building query seed array... [1.512s] Computing hash join... [4.883s] Masking low complexity seeds... [0.167s] Searching alignments... [125.574s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.116s] Building query seed array... [1.414s] Computing hash join... [4.706s] Masking low complexity seeds... [0.172s] Searching alignments... [180.648s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.119s] Building query seed array... [1.578s] Computing hash join... [4.626s] Masking low complexity seeds... [0.153s] Searching alignments... [144.458s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.369s] Building query seed array... [1.69s] Computing hash join... [4.611s] Masking low complexity seeds... [0.163s] Searching alignments... [107.122s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.003s] Building query seed array... [1.406s] Computing hash join... [4.843s] Masking low complexity seeds... [0.163s] Searching alignments... [110.647s] Deallocating memory... [0s] Deallocating buffers... [0.159s] Clearing query masking... [1.05s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.739s] Sorting trace points... [1.682s] Computing alignments... [50.972s] Deallocating buffers... [0.031s] Loading trace points... [0.073s] Sorting trace points... [1.213s] Computing alignments... [52.455s] Deallocating buffers... [0.032s] Loading trace points... [0.067s] Sorting trace points... [1.64s] Computing alignments... [53.65s] Deallocating buffers... [0.038s] Loading trace points... [0.07s] Sorting trace points... [1.483s] Computing alignments... [55.611s] Deallocating buffers... [0.036s] Loading trace points... [0.052s] Sorting trace points... [1.741s] Computing alignments... [53.502s] Deallocating buffers... [0.02s] Loading trace points... [0.054s] Sorting trace points... [1.399s] Computing alignments... [52.89s] Deallocating buffers... [0.031s] Loading trace points... [0.068s] Sorting trace points... [1.698s] Computing alignments... [53.644s] Deallocating buffers... [0.035s] Loading trace points... [0.053s] Sorting trace points... [1.55s] Computing alignments... [53.807s] Deallocating buffers... [0.038s] Loading trace points... [0.068s] Sorting trace points... [1.319s] Computing alignments... [52.184s] Deallocating buffers... [0.036s] Loading trace points... [0.061s] Sorting trace points... [1.264s] Computing alignments... [54.188s] Deallocating buffers... [0.034s] Loading trace points... [0.039s] Sorting trace points... [1.618s] Computing alignments... [52.822s] Deallocating buffers... [0.043s] Loading trace points... [0.082s] Sorting trace points... [1.847s] Computing alignments... [56.525s] Deallocating buffers... [0.032s] Loading trace points... [0.078s] Sorting trace points... [1.501s] Computing alignments... [53.589s] Deallocating buffers... [0.034s] Loading trace points... [0.728s] Sorting trace points... [1.724s] Computing alignments... [52.014s] Deallocating buffers... [0.025s] Loading trace points... [0.068s] Sorting trace points... [1.548s] Computing alignments... [52.39s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.742s] Computing alignments... [54.47s] Deallocating buffers... [0.035s] Loading trace points... [0s] [890.646s] Deallocating reference... [0.083s] Loading reference sequences... [30.422s] Masking reference... [30.904s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.305s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.135s] Building query seed array... [1.558s] Computing hash join... [5.394s] Masking low complexity seeds... [0.175s] Searching alignments... [404.409s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.704s] Building query seed array... [2.092s] Computing hash join... [5.538s] Masking low complexity seeds... [0.175s] Searching alignments... [166.296s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.041s] Building query seed array... [2.038s] Computing hash join... [4.732s] Masking low complexity seeds... [0.179s] Searching alignments... [130.866s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.51s] Building query seed array... [1.777s] Computing hash join... [4.997s] Masking low complexity seeds... [0.182s] Searching alignments... [126.486s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.116s] Building query seed array... [1.555s] Computing hash join... [4.987s] Masking low complexity seeds... [0.164s] Searching alignments... [186.56s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.231s] Building query seed array... [1.622s] Computing hash join... [4.713s] Masking low complexity seeds... [0.176s] Searching alignments... [146.85s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.345s] Building query seed array... [1.907s] Computing hash join... [5.198s] Masking low complexity seeds... [0.158s] Searching alignments... [108.466s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.554s] Building query seed array... [1.555s] Computing hash join... [4.696s] Masking low complexity seeds... [0.171s] Searching alignments... [112.701s] Deallocating memory... [0s] Deallocating buffers... [1.065s] Clearing query masking... [1.007s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.604s] Sorting trace points... [1.753s] Computing alignments... [49.137s] Deallocating buffers... [0.034s] Loading trace points... [0.063s] Sorting trace points... [1.65s] Computing alignments... [50.527s] Deallocating buffers... [0.029s] Loading trace points... [0.057s] Sorting trace points... [1.392s] Computing alignments... [51.569s] Deallocating buffers... [0.033s] Loading trace points... [0.086s] Sorting trace points... [1.732s] Computing alignments... [53.548s] Deallocating buffers... [0.036s] Loading trace points... [0.068s] Sorting trace points... [1.38s] Computing alignments... [51.774s] Deallocating buffers... [0.031s] Loading trace points... [0.085s] Sorting trace points... [1.641s] Computing alignments... [51.128s] Deallocating buffers... [0.04s] Loading trace points... [0.043s] Sorting trace points... [1.725s] Computing alignments... [51.833s] Deallocating buffers... [0.035s] Loading trace points... [0.052s] Sorting trace points... [1.699s] Computing alignments... [51.553s] Deallocating buffers... [0.039s] Loading trace points... [0.067s] Sorting trace points... [1.222s] Computing alignments... [50.371s] Deallocating buffers... [0.036s] Loading trace points... [0.051s] Sorting trace points... [1.725s] Computing alignments... [52.757s] Deallocating buffers... [0.035s] Loading trace points... [0.073s] Sorting trace points... [1.683s] Computing alignments... [51.078s] Deallocating buffers... [0.034s] Loading trace points... [0.049s] Sorting trace points... [1.341s] Computing alignments... [54.174s] Deallocating buffers... [0.037s] Loading trace points... [0.067s] Sorting trace points... [1.299s] Computing alignments... [51.892s] Deallocating buffers... [0.025s] Loading trace points... [0.057s] Sorting trace points... [1.548s] Computing alignments... [50.306s] Deallocating buffers... [0.031s] Loading trace points... [0.064s] Sorting trace points... [1.73s] Computing alignments... [50.85s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.742s] Computing alignments... [52.506s] Deallocating buffers... [0.035s] Loading trace points... [0s] [860.423s] Deallocating reference... [0.092s] Loading reference sequences... [31.631s] Masking reference... [30.882s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.178s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.176s] Building query seed array... [1.524s] Computing hash join... [5.135s] Masking low complexity seeds... [0.173s] Searching alignments... [411.577s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.544s] Building query seed array... [1.733s] Computing hash join... [5.295s] Masking low complexity seeds... [0.178s] Searching alignments... [173.918s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.281s] Building query seed array... [1.846s] Computing hash join... [4.736s] Masking low complexity seeds... [0.168s] Searching alignments... [131.546s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.128s] Building query seed array... [1.505s] Computing hash join... [5.506s] Masking low complexity seeds... [0.21s] Searching alignments... [129.412s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.01s] Building query seed array... [1.37s] Computing hash join... [4.665s] Masking low complexity seeds... [0.165s] Searching alignments... [193.981s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.996s] Building query seed array... [1.578s] Computing hash join... [4.803s] Masking low complexity seeds... [0.16s] Searching alignments... [148.355s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.476s] Building query seed array... [1.654s] Computing hash join... [4.914s] Masking low complexity seeds... [0.172s] Searching alignments... [108.882s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.256s] Building query seed array... [1.41s] Computing hash join... [4.774s] Masking low complexity seeds... [0.166s] Searching alignments... [113.798s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.041s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.955s] Sorting trace points... [1.643s] Computing alignments... [49.767s] Deallocating buffers... [0.044s] Loading trace points... [0.001s] Sorting trace points... [1.263s] Computing alignments... [51.558s] Deallocating buffers... [0.042s] Loading trace points... [0.083s] Sorting trace points... [1.439s] Computing alignments... [51.932s] Deallocating buffers... [0.046s] Loading trace points... [0.064s] Sorting trace points... [1.84s] Computing alignments... [54.012s] Deallocating buffers... [0.052s] Loading trace points... [0.066s] Sorting trace points... [1.644s] Computing alignments... [52.013s] Deallocating buffers... [0.042s] Loading trace points... [0.063s] Sorting trace points... [1.267s] Computing alignments... [51.125s] Deallocating buffers... [0.049s] Loading trace points... [0.042s] Sorting trace points... [1.783s] Computing alignments... [51.899s] Deallocating buffers... [0.047s] Loading trace points... [0.065s] Sorting trace points... [1.783s] Computing alignments... [52.209s] Deallocating buffers... [0.044s] Loading trace points... [0.075s] Sorting trace points... [1.685s] Computing alignments... [50.728s] Deallocating buffers... [0.047s] Loading trace points... [0.109s] Sorting trace points... [1.722s] Computing alignments... [53.669s] Deallocating buffers... [0.042s] Loading trace points... [0.044s] Sorting trace points... [1.257s] Computing alignments... [51.675s] Deallocating buffers... [0.055s] Loading trace points... [0.062s] Sorting trace points... [1.494s] Computing alignments... [54.793s] Deallocating buffers... [0.049s] Loading trace points... [0.075s] Sorting trace points... [1.757s] Computing alignments... [52.546s] Deallocating buffers... [0.037s] Loading trace points... [0.001s] Sorting trace points... [1.657s] Computing alignments... [50.711s] Deallocating buffers... [0.041s] Loading trace points... [0.069s] Sorting trace points... [1.701s] Computing alignments... [51.217s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.72s] Computing alignments... [53.18s] Deallocating buffers... [0.061s] Loading trace points... [0s] [869.311s] Deallocating reference... [0.091s] Loading reference sequences... [28.91s] Masking reference... [30.853s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.644s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.266s] Building query seed array... [1.572s] Computing hash join... [5.419s] Masking low complexity seeds... [0.181s] Searching alignments... [407.789s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.492s] Building query seed array... [2.004s] Computing hash join... [5.463s] Masking low complexity seeds... [0.181s] Searching alignments... [168.968s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.439s] Building query seed array... [1.927s] Computing hash join... [5.644s] Masking low complexity seeds... [0.192s] Searching alignments... [131.186s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.372s] Building query seed array... [1.533s] Computing hash join... [4.686s] Masking low complexity seeds... [0.183s] Searching alignments... [128.104s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.496s] Building query seed array... [1.495s] Computing hash join... [4.681s] Masking low complexity seeds... [0.177s] Searching alignments... [191.92s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.483s] Building query seed array... [1.596s] Computing hash join... [5.412s] Masking low complexity seeds... [0.162s] Searching alignments... [143.343s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.752s] Building query seed array... [1.755s] Computing hash join... [4.764s] Masking low complexity seeds... [0.162s] Searching alignments... [108.611s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.73s] Building query seed array... [1.536s] Computing hash join... [4.609s] Masking low complexity seeds... [0.168s] Searching alignments... [109.69s] Deallocating memory... [0s] Deallocating buffers... [1.031s] Clearing query masking... [1.033s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.872s] Sorting trace points... [1.664s] Computing alignments... [45.436s] Deallocating buffers... [0.033s] Loading trace points... [0.073s] Sorting trace points... [1.692s] Computing alignments... [46.289s] Deallocating buffers... [0.033s] Loading trace points... [0.084s] Sorting trace points... [1.658s] Computing alignments... [47.288s] Deallocating buffers... [0.046s] Loading trace points... [0.082s] Sorting trace points... [1.744s] Computing alignments... [49.431s] Deallocating buffers... [0.022s] Loading trace points... [0.055s] Sorting trace points... [1.336s] Computing alignments... [47.823s] Deallocating buffers... [0.033s] Loading trace points... [0.066s] Sorting trace points... [1.526s] Computing alignments... [47.092s] Deallocating buffers... [0.031s] Loading trace points... [0.072s] Sorting trace points... [1.743s] Computing alignments... [47.899s] Deallocating buffers... [0.03s] Loading trace points... [0.058s] Sorting trace points... [1.527s] Computing alignments... [48.172s] Deallocating buffers... [0.022s] Loading trace points... [0.047s] Sorting trace points... [1.664s] Computing alignments... [46.837s] Deallocating buffers... [0.034s] Loading trace points... [0.078s] Sorting trace points... [1.308s] Computing alignments... [48.633s] Deallocating buffers... [0.033s] Loading trace points... [0.072s] Sorting trace points... [1.672s] Computing alignments... [47.668s] Deallocating buffers... [0.031s] Loading trace points... [0.068s] Sorting trace points... [1.443s] Computing alignments... [50.373s] Deallocating buffers... [0.035s] Loading trace points... [0.073s] Sorting trace points... [1.726s] Computing alignments... [47.773s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.722s] Computing alignments... [46.789s] Deallocating buffers... [0.02s] Loading trace points... [0.044s] Sorting trace points... [1.652s] Computing alignments... [47.192s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.69s] Computing alignments... [48.368s] Deallocating buffers... [0.04s] Loading trace points... [0s] [799.228s] Deallocating reference... [0.101s] Loading reference sequences... [33.792s] Masking reference... [31.349s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.161s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.263s] Building query seed array... [1.532s] Computing hash join... [4.791s] Masking low complexity seeds... [0.172s] Searching alignments... [407.809s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.984s] Building query seed array... [1.788s] Computing hash join... [5.349s] Masking low complexity seeds... [0.176s] Searching alignments... [172.707s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.861s] Building query seed array... [1.866s] Computing hash join... [4.896s] Masking low complexity seeds... [0.176s] Searching alignments... [129.466s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.032s] Building query seed array... [1.524s] Computing hash join... [5.464s] Masking low complexity seeds... [0.171s] Searching alignments... [126.298s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.11s] Building query seed array... [1.448s] Computing hash join... [4.627s] Masking low complexity seeds... [0.169s] Searching alignments... [189.21s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.313s] Building query seed array... [1.559s] Computing hash join... [5.072s] Masking low complexity seeds... [0.165s] Searching alignments... [146.166s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.717s] Building query seed array... [1.719s] Computing hash join... [5.196s] Masking low complexity seeds... [0.167s] Searching alignments... [109.071s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.74s] Building query seed array... [1.412s] Computing hash join... [4.668s] Masking low complexity seeds... [0.171s] Searching alignments... [111.961s] Deallocating memory... [0s] Deallocating buffers... [0.155s] Clearing query masking... [1.073s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [8.797s] Sorting trace points... [1.769s] Computing alignments... [53.24s] Deallocating buffers... [0.072s] Loading trace points... [0.043s] Sorting trace points... [1.689s] Computing alignments... [55.216s] Deallocating buffers... [0.05s] Loading trace points... [0.056s] Sorting trace points... [1.684s] Computing alignments... [56.094s] Deallocating buffers... [0.05s] Loading trace points... [0.103s] Sorting trace points... [1.759s] Computing alignments... [58.624s] Deallocating buffers... [0.054s] Loading trace points... [0.121s] Sorting trace points... [1.63s] Computing alignments... [56.198s] Deallocating buffers... [0.049s] Loading trace points... [0.06s] Sorting trace points... [1.385s] Computing alignments... [55.385s] Deallocating buffers... [0.063s] Loading trace points... [0.08s] Sorting trace points... [1.28s] Computing alignments... [56.247s] Deallocating buffers... [0.051s] Loading trace points... [0.487s] Sorting trace points... [1.32s] Computing alignments... [56.373s] Deallocating buffers... [0.055s] Loading trace points... [0.96s] Sorting trace points... [1.294s] Computing alignments... [54.175s] Deallocating buffers... [0.058s] Loading trace points... [0.071s] Sorting trace points... [1.522s] Computing alignments... [57.262s] Deallocating buffers... [0.053s] Loading trace points... [0.064s] Sorting trace points... [1.807s] Computing alignments... [55.272s] Deallocating buffers... [0.051s] Loading trace points... [0.085s] Sorting trace points... [1.722s] Computing alignments... [59.607s] Deallocating buffers... [0.059s] Loading trace points... [0.051s] Sorting trace points... [1.679s] Computing alignments... [57.224s] Deallocating buffers... [0.058s] Loading trace points... [0.065s] Sorting trace points... [1.635s] Computing alignments... [54.528s] Deallocating buffers... [0.043s] Loading trace points... [0.058s] Sorting trace points... [1.699s] Computing alignments... [55.007s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [1.675s] Computing alignments... [57.132s] Deallocating buffers... [0.063s] Loading trace points... [0s] [935.166s] Deallocating reference... [0.101s] Loading reference sequences... [248.766s] Masking reference... [31.278s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.42s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.129s] Building query seed array... [1.551s] Computing hash join... [5.171s] Masking low complexity seeds... [0.175s] Searching alignments... [410.691s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.438s] Building query seed array... [1.959s] Computing hash join... [5.266s] Masking low complexity seeds... [0.185s] Searching alignments... [169.208s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.59s] Building query seed array... [1.98s] Computing hash join... [5.023s] Masking low complexity seeds... [0.163s] Searching alignments... [128.83s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.148s] Building query seed array... [1.639s] Computing hash join... [4.824s] Masking low complexity seeds... [0.185s] Searching alignments... [128.638s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.11s] Building query seed array... [1.471s] Computing hash join... [4.63s] Masking low complexity seeds... [0.159s] Searching alignments... [189.741s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.246s] Building query seed array... [1.683s] Computing hash join... [4.885s] Masking low complexity seeds... [0.162s] Searching alignments... [149.066s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.536s] Building query seed array... [1.773s] Computing hash join... [5.139s] Masking low complexity seeds... [0.163s] Searching alignments... [109.033s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.771s] Building query seed array... [1.492s] Computing hash join... [4.822s] Masking low complexity seeds... [0.161s] Searching alignments... [113.175s] Deallocating memory... [0s] Deallocating buffers... [0.359s] Clearing query masking... [1.088s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.69s] Sorting trace points... [1.645s] Computing alignments... [52.035s] Deallocating buffers... [0.068s] Loading trace points... [0.048s] Sorting trace points... [1.606s] Computing alignments... [54.402s] Deallocating buffers... [0.068s] Loading trace points... [0.052s] Sorting trace points... [1.707s] Computing alignments... [55.057s] Deallocating buffers... [0.048s] Loading trace points... [0.054s] Sorting trace points... [1.466s] Computing alignments... [56.995s] Deallocating buffers... [0.061s] Loading trace points... [0.048s] Sorting trace points... [1.324s] Computing alignments... [54.443s] Deallocating buffers... [0.054s] Loading trace points... [0.055s] Sorting trace points... [1.696s] Computing alignments... [53.817s] Deallocating buffers... [0.058s] Loading trace points... [0.061s] Sorting trace points... [1.775s] Computing alignments... [54.42s] Deallocating buffers... [0.053s] Loading trace points... [0.116s] Sorting trace points... [1.696s] Computing alignments... [54.75s] Deallocating buffers... [0.057s] Loading trace points... [0.087s] Sorting trace points... [1.486s] Computing alignments... [53s] Deallocating buffers... [0.053s] Loading trace points... [0.036s] Sorting trace points... [1.402s] Computing alignments... [55.465s] Deallocating buffers... [0.059s] Loading trace points... [0.073s] Sorting trace points... [1.313s] Computing alignments... [54.124s] Deallocating buffers... [0.061s] Loading trace points... [0.039s] Sorting trace points... [1.809s] Computing alignments... [57.589s] Deallocating buffers... [0.066s] Loading trace points... [0.099s] Sorting trace points... [1.681s] Computing alignments... [55.02s] Deallocating buffers... [0.063s] Loading trace points... [0.068s] Sorting trace points... [1.397s] Computing alignments... [53.153s] Deallocating buffers... [0.058s] Loading trace points... [0.09s] Sorting trace points... [1.739s] Computing alignments... [53.578s] Deallocating buffers... [0.058s] Loading trace points... [0s] Sorting trace points... [1.652s] Computing alignments... [55.238s] Deallocating buffers... [0.054s] Loading trace points... [0s] [910.214s] Deallocating reference... [0.069s] Loading reference sequences... [30.673s] Masking reference... [32.148s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [31.758s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.367s] Building query seed array... [1.547s] Computing hash join... [5.14s] Masking low complexity seeds... [0.175s] Searching alignments... [410.42s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.524s] Building query seed array... [1.756s] Computing hash join... [5.253s] Masking low complexity seeds... [0.173s] Searching alignments... [171.7s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.552s] Building query seed array... [1.911s] Computing hash join... [4.979s] Masking low complexity seeds... [0.176s] Searching alignments... [130.978s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.227s] Building query seed array... [1.536s] Computing hash join... [4.71s] Masking low complexity seeds... [0.175s] Searching alignments... [126.953s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.126s] Building query seed array... [1.399s] Computing hash join... [4.592s] Masking low complexity seeds... [0.159s] Searching alignments... [185.683s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.239s] Building query seed array... [1.592s] Computing hash join... [4.652s] Masking low complexity seeds... [0.162s] Searching alignments... [152.798s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.255s] Building query seed array... [1.691s] Computing hash join... [5.123s] Masking low complexity seeds... [0.164s] Searching alignments... [108.236s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.232s] Building query seed array... [1.415s] Computing hash join... [4.582s] Masking low complexity seeds... [0.154s] Searching alignments... [113.172s] Deallocating memory... [0s] Deallocating buffers... [0.16s] Clearing query masking... [1.091s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.251s] Sorting trace points... [1.662s] Computing alignments... [49.389s] Deallocating buffers... [0.032s] Loading trace points... [0.002s] Sorting trace points... [1.632s] Computing alignments... [50.349s] Deallocating buffers... [0.029s] Loading trace points... [0.001s] Sorting trace points... [1.653s] Computing alignments... [51.767s] Deallocating buffers... [0.036s] Loading trace points... [0.959s] Sorting trace points... [1.8s] Computing alignments... [53.495s] Deallocating buffers... [0.031s] Loading trace points... [0.063s] Sorting trace points... [1.656s] Computing alignments... [51.519s] Deallocating buffers... [0.035s] Loading trace points... [0.054s] Sorting trace points... [1.331s] Computing alignments... [51.251s] Deallocating buffers... [0.035s] Loading trace points... [0.048s] Sorting trace points... [1.311s] Computing alignments... [52.198s] Deallocating buffers... [0.039s] Loading trace points... [0.051s] Sorting trace points... [1.749s] Computing alignments... [51.826s] Deallocating buffers... [0.039s] Loading trace points... [0.069s] Sorting trace points... [1.441s] Computing alignments... [50.597s] Deallocating buffers... [0.031s] Loading trace points... [0.074s] Sorting trace points... [1.594s] Computing alignments... [53.014s] Deallocating buffers... [0.035s] Loading trace points... [0.053s] Sorting trace points... [1.292s] Computing alignments... [51.535s] Deallocating buffers... [0.044s] Loading trace points... [0.085s] Sorting trace points... [1.641s] Computing alignments... [54.265s] Deallocating buffers... [0.034s] Loading trace points... [0.07s] Sorting trace points... [1.334s] Computing alignments... [51.948s] Deallocating buffers... [0.032s] Loading trace points... [0.002s] Sorting trace points... [1.337s] Computing alignments... [50.471s] Deallocating buffers... [0.032s] Loading trace points... [0.085s] Sorting trace points... [1.661s] Computing alignments... [50.698s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.736s] Computing alignments... [52.752s] Deallocating buffers... [0.031s] Loading trace points... [0s] [863.468s] Deallocating reference... [0.092s] Loading reference sequences... [23.969s] Masking reference... [25.354s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [26.612s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.514s] Building query seed array... [1.523s] Computing hash join... [4.052s] Masking low complexity seeds... [0.16s] Searching alignments... [327.645s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.134s] Building query seed array... [1.719s] Computing hash join... [4.396s] Masking low complexity seeds... [0.17s] Searching alignments... [137.787s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.209s] Building query seed array... [1.813s] Computing hash join... [3.922s] Masking low complexity seeds... [0.158s] Searching alignments... [104.789s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.32s] Building query seed array... [1.518s] Computing hash join... [3.892s] Masking low complexity seeds... [0.154s] Searching alignments... [102.596s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.26s] Building query seed array... [1.357s] Computing hash join... [3.944s] Masking low complexity seeds... [0.15s] Searching alignments... [152.829s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.706s] Building query seed array... [1.572s] Computing hash join... [3.788s] Masking low complexity seeds... [0.156s] Searching alignments... [120.213s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.111s] Building query seed array... [1.67s] Computing hash join... [3.8s] Masking low complexity seeds... [0.148s] Searching alignments... [87.26s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.24s] Building query seed array... [1.423s] Computing hash join... [3.789s] Masking low complexity seeds... [0.157s] Searching alignments... [92.382s] Deallocating memory... [0s] Deallocating buffers... [0.119s] Clearing query masking... [1.065s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.311s] Sorting trace points... [1.35s] Computing alignments... [38.693s] Deallocating buffers... [0.019s] Loading trace points... [0.075s] Sorting trace points... [1.294s] Computing alignments... [39.817s] Deallocating buffers... [0.026s] Loading trace points... [0.037s] Sorting trace points... [1.319s] Computing alignments... [40.59s] Deallocating buffers... [0.025s] Loading trace points... [0.363s] Sorting trace points... [1.506s] Computing alignments... [42.147s] Deallocating buffers... [0.03s] Loading trace points... [0.068s] Sorting trace points... [1.366s] Computing alignments... [40.602s] Deallocating buffers... [0.024s] Loading trace points... [0.053s] Sorting trace points... [1.075s] Computing alignments... [40.071s] Deallocating buffers... [0.026s] Loading trace points... [0.641s] Sorting trace points... [1.099s] Computing alignments... [40.421s] Deallocating buffers... [0.026s] Loading trace points... [0.054s] Sorting trace points... [1.397s] Computing alignments... [40.826s] Deallocating buffers... [0.026s] Loading trace points... [0.088s] Sorting trace points... [1.013s] Computing alignments... [39.403s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.056s] Computing alignments... [41.531s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.342s] Computing alignments... [39.851s] Deallocating buffers... [0.029s] Loading trace points... [0.074s] Sorting trace points... [1.439s] Computing alignments... [42.645s] Deallocating buffers... [0.036s] Loading trace points... [0.059s] Sorting trace points... [1.363s] Computing alignments... [40.684s] Deallocating buffers... [0.025s] Loading trace points... [0.054s] Sorting trace points... [1.065s] Computing alignments... [39.462s] Deallocating buffers... [0.026s] Loading trace points... [0.044s] Sorting trace points... [1.183s] Computing alignments... [39.647s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.417s] Computing alignments... [41.268s] Deallocating buffers... [0.026s] Loading trace points... [0s] [677.329s] Deallocating reference... [0.081s] Loading reference sequences... [0.064s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [3280.02s] [3280.05s] Deallocating queries... [0.044s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.883s] [3.613s] Closing the database... [0s] Cleaning up... [0s] Total time = 38506.3s Reported 3394851267 pairwise alignments, 3394851267 HSPs. 4216422 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-06.trimmed.R1.fastq.gz complete: CH01-06.trimmed.R1.blastx.meganized.daa Now MEGANizing CH01-06.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH01-06.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (302.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2.4s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,233.7s) Total reads: 4,216,422 With hits: 4,216,422 Alignments: 2,452,901,532 Assig. Taxonomy: 2,389,728 Assig. SEED: 101,077 Assig. EGGNOG: 20,532 Assig. GTDB: 180,742 Assig. EC: 395,136 Assig. INTERPRO2GO: 1,105,677 MinSupport set to: 2108 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 4,858 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (13.7s) Min-supp. changes: 3,442 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.4s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 168 Class. SEED: 474 Class. EGGNOG: 1,599 Class. GTDB: 47 Class. EC: 2,289 Class. INTERPRO2GO: 8,450 Total time: 5,568s Peak memory: 39.8 of 195.3G MEGANization of CH01-06.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-06.trimmed.R2.fastq.gz... 6d33a8b7d23b33a2bc21c45b2a95b9d2 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-06.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-06.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.327s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.731s] Opening the output file... [0s] Loading query sequences... [65.859s] Masking queries... [17.655s] Algorithm: Double-indexed Building query histograms... [14.324s] Loading reference sequences... [31.414s] Masking reference... [32.012s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.395s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.369s] Building query seed array... [1.571s] Computing hash join... [5.704s] Masking low complexity seeds... [0.176s] Searching alignments... [434.939s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.743s] Building query seed array... [2.135s] Computing hash join... [4.927s] Masking low complexity seeds... [0.181s] Searching alignments... [174.678s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.488s] Building query seed array... [1.955s] Computing hash join... [4.795s] Masking low complexity seeds... [0.175s] Searching alignments... [132.884s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.195s] Building query seed array... [1.72s] Computing hash join... [4.861s] Masking low complexity seeds... [0.188s] Searching alignments... [132.759s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.012s] Building query seed array... [1.493s] Computing hash join... [4.656s] Masking low complexity seeds... [0.166s] Searching alignments... [192.821s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.742s] Building query seed array... [1.77s] Computing hash join... [4.63s] Masking low complexity seeds... [0.153s] Searching alignments... [150.898s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.789s] Building query seed array... [1.83s] Computing hash join... [5.419s] Masking low complexity seeds... [0.169s] Searching alignments... [111.794s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.82s] Building query seed array... [1.561s] Computing hash join... [5.099s] Masking low complexity seeds... [0.179s] Searching alignments... [119.269s] Deallocating memory... [0s] Deallocating buffers... [0.921s] Clearing query masking... [1.038s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.891s] Sorting trace points... [1.796s] Computing alignments... [50.824s] Deallocating buffers... [0.026s] Loading trace points... [0.041s] Sorting trace points... [1.362s] Computing alignments... [50.211s] Deallocating buffers... [0.033s] Loading trace points... [0.094s] Sorting trace points... [1.687s] Computing alignments... [50.458s] Deallocating buffers... [0.02s] Loading trace points... [0.058s] Sorting trace points... [1.243s] Computing alignments... [54.206s] Deallocating buffers... [0.034s] Loading trace points... [0.068s] Sorting trace points... [1.711s] Computing alignments... [52.623s] Deallocating buffers... [0.026s] Loading trace points... [0.064s] Sorting trace points... [1.747s] Computing alignments... [51.916s] Deallocating buffers... [0.034s] Loading trace points... [0.048s] Sorting trace points... [1.672s] Computing alignments... [52.052s] Deallocating buffers... [0.037s] Loading trace points... [0.082s] Sorting trace points... [1.724s] Computing alignments... [53.091s] Deallocating buffers... [0.021s] Loading trace points... [0.036s] Sorting trace points... [1.686s] Computing alignments... [50.482s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.719s] Computing alignments... [53.91s] Deallocating buffers... [0.035s] Loading trace points... [0.026s] Sorting trace points... [1.468s] Computing alignments... [51.816s] Deallocating buffers... [0.032s] Loading trace points... [0.068s] Sorting trace points... [1.817s] Computing alignments... [53.66s] Deallocating buffers... [0.032s] Loading trace points... [0.052s] Sorting trace points... [1.726s] Computing alignments... [50.142s] Deallocating buffers... [0.03s] Loading trace points... [0.059s] Sorting trace points... [1.703s] Computing alignments... [51.7s] Deallocating buffers... [0.034s] Loading trace points... [0.093s] Sorting trace points... [1.726s] Computing alignments... [50.802s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.253s] Computing alignments... [51.06s] Deallocating buffers... [0.039s] Loading trace points... [0s] [865.319s] Deallocating reference... [0.06s] Loading reference sequences... [29.614s] Masking reference... [32.195s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.74s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.187s] Building query seed array... [1.609s] Computing hash join... [5.404s] Masking low complexity seeds... [0.184s] Searching alignments... [422.911s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.496s] Building query seed array... [2.021s] Computing hash join... [4.787s] Masking low complexity seeds... [0.17s] Searching alignments... [172.871s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.911s] Building query seed array... [1.982s] Computing hash join... [4.878s] Masking low complexity seeds... [0.166s] Searching alignments... [131.343s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.638s] Building query seed array... [1.774s] Computing hash join... [4.873s] Masking low complexity seeds... [0.182s] Searching alignments... [130.636s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.146s] Building query seed array... [1.517s] Computing hash join... [5.3s] Masking low complexity seeds... [0.184s] Searching alignments... [195.525s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.064s] Building query seed array... [1.69s] Computing hash join... [5.494s] Masking low complexity seeds... [0.213s] Searching alignments... [154.414s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.814s] Building query seed array... [1.875s] Computing hash join... [5.024s] Masking low complexity seeds... [0.163s] Searching alignments... [112.629s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.982s] Building query seed array... [1.682s] Computing hash join... [4.711s] Masking low complexity seeds... [0.157s] Searching alignments... [114.852s] Deallocating memory... [0s] Deallocating buffers... [0.663s] Clearing query masking... [1.044s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.917s] Sorting trace points... [1.761s] Computing alignments... [53.431s] Deallocating buffers... [0.09s] Loading trace points... [0.067s] Sorting trace points... [1.635s] Computing alignments... [52.451s] Deallocating buffers... [0.073s] Loading trace points... [0.187s] Sorting trace points... [1.68s] Computing alignments... [52.304s] Deallocating buffers... [0.071s] Loading trace points... [0.105s] Sorting trace points... [1.839s] Computing alignments... [56.706s] Deallocating buffers... [0.08s] Loading trace points... [0.058s] Sorting trace points... [1.335s] Computing alignments... [54.463s] Deallocating buffers... [0.072s] Loading trace points... [0.079s] Sorting trace points... [1.635s] Computing alignments... [53.933s] Deallocating buffers... [0.08s] Loading trace points... [0.104s] Sorting trace points... [1.424s] Computing alignments... [54.692s] Deallocating buffers... [0.074s] Loading trace points... [0.055s] Sorting trace points... [1.504s] Computing alignments... [56.366s] Deallocating buffers... [0.058s] Loading trace points... [0.064s] Sorting trace points... [1.473s] Computing alignments... [52.217s] Deallocating buffers... [0.071s] Loading trace points... [0.057s] Sorting trace points... [1.769s] Computing alignments... [57.137s] Deallocating buffers... [0.073s] Loading trace points... [0.096s] Sorting trace points... [1.335s] Computing alignments... [54.073s] Deallocating buffers... [0.076s] Loading trace points... [0.069s] Sorting trace points... [1.613s] Computing alignments... [56.076s] Deallocating buffers... [0.07s] Loading trace points... [0.079s] Sorting trace points... [1.228s] Computing alignments... [52.099s] Deallocating buffers... [0.068s] Loading trace points... [0.036s] Sorting trace points... [1.678s] Computing alignments... [53.395s] Deallocating buffers... [0.081s] Loading trace points... [0.043s] Sorting trace points... [1.754s] Computing alignments... [52.171s] Deallocating buffers... [0.064s] Loading trace points... [0s] Sorting trace points... [1.528s] Computing alignments... [53.541s] Deallocating buffers... [0.068s] Loading trace points... [0s] [901.576s] Deallocating reference... [0.074s] Loading reference sequences... [28.983s] Masking reference... [30.912s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.091s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.496s] Building query seed array... [1.567s] Computing hash join... [5.435s] Masking low complexity seeds... [0.177s] Searching alignments... [426.191s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.868s] Building query seed array... [1.897s] Computing hash join... [5.579s] Masking low complexity seeds... [0.216s] Searching alignments... [174.143s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.762s] Building query seed array... [1.925s] Computing hash join... [4.854s] Masking low complexity seeds... [0.203s] Searching alignments... [134.548s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.167s] Building query seed array... [1.635s] Computing hash join... [4.786s] Masking low complexity seeds... [0.17s] Searching alignments... [130.653s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.367s] Building query seed array... [1.543s] Computing hash join... [5.314s] Masking low complexity seeds... [0.171s] Searching alignments... [193.167s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.435s] Building query seed array... [1.67s] Computing hash join... [5.477s] Masking low complexity seeds... [0.207s] Searching alignments... [155.96s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.508s] Building query seed array... [1.852s] Computing hash join... [5.336s] Masking low complexity seeds... [0.187s] Searching alignments... [110.778s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.869s] Building query seed array... [1.497s] Computing hash join... [4.787s] Masking low complexity seeds... [0.167s] Searching alignments... [115.329s] Deallocating memory... [0s] Deallocating buffers... [0.733s] Clearing query masking... [1.098s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.139s] Sorting trace points... [1.73s] Computing alignments... [52.946s] Deallocating buffers... [0.078s] Loading trace points... [0.042s] Sorting trace points... [1.341s] Computing alignments... [52.001s] Deallocating buffers... [0.079s] Loading trace points... [0.078s] Sorting trace points... [1.252s] Computing alignments... [51.462s] Deallocating buffers... [0.072s] Loading trace points... [0.877s] Sorting trace points... [1.599s] Computing alignments... [56.6s] Deallocating buffers... [0.073s] Loading trace points... [0.088s] Sorting trace points... [1.649s] Computing alignments... [54.243s] Deallocating buffers... [0.084s] Loading trace points... [0s] Sorting trace points... [1.772s] Computing alignments... [53.858s] Deallocating buffers... [0.09s] Loading trace points... [0.092s] Sorting trace points... [1.293s] Computing alignments... [54.25s] Deallocating buffers... [0.073s] Loading trace points... [0.001s] Sorting trace points... [1.788s] Computing alignments... [55.426s] Deallocating buffers... [0.069s] Loading trace points... [0.049s] Sorting trace points... [1.771s] Computing alignments... [53.157s] Deallocating buffers... [0.078s] Loading trace points... [0.055s] Sorting trace points... [1.774s] Computing alignments... [56.626s] Deallocating buffers... [0.067s] Loading trace points... [0.056s] Sorting trace points... [1.321s] Computing alignments... [53.989s] Deallocating buffers... [0.056s] Loading trace points... [0.069s] Sorting trace points... [1.362s] Computing alignments... [56.008s] Deallocating buffers... [0.052s] Loading trace points... [0.062s] Sorting trace points... [1.223s] Computing alignments... [51.612s] Deallocating buffers... [0.062s] Loading trace points... [0.086s] Sorting trace points... [1.549s] Computing alignments... [53.521s] Deallocating buffers... [0.06s] Loading trace points... [0.113s] Sorting trace points... [1.694s] Computing alignments... [52.503s] Deallocating buffers... [0.076s] Loading trace points... [0s] Sorting trace points... [1.652s] Computing alignments... [53.188s] Deallocating buffers... [0.058s] Loading trace points... [0s] [898.298s] Deallocating reference... [0.069s] Loading reference sequences... [30.96s] Masking reference... [30.912s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.574s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.363s] Building query seed array... [1.513s] Computing hash join... [4.913s] Masking low complexity seeds... [0.174s] Searching alignments... [424.947s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.483s] Building query seed array... [1.738s] Computing hash join... [5.405s] Masking low complexity seeds... [0.172s] Searching alignments... [175.462s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.7s] Building query seed array... [1.859s] Computing hash join... [4.835s] Masking low complexity seeds... [0.173s] Searching alignments... [134.171s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.082s] Building query seed array... [1.497s] Computing hash join... [5.067s] Masking low complexity seeds... [0.173s] Searching alignments... [130.83s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.088s] Building query seed array... [1.393s] Computing hash join... [5.298s] Masking low complexity seeds... [0.17s] Searching alignments... [199.873s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.856s] Building query seed array... [1.614s] Computing hash join... [4.792s] Masking low complexity seeds... [0.163s] Searching alignments... [153.054s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.912s] Building query seed array... [1.685s] Computing hash join... [4.669s] Masking low complexity seeds... [0.163s] Searching alignments... [112.541s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.679s] Building query seed array... [1.375s] Computing hash join... [4.645s] Masking low complexity seeds... [0.156s] Searching alignments... [117.096s] Deallocating memory... [0s] Deallocating buffers... [0.161s] Clearing query masking... [1.058s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.112s] Sorting trace points... [1.453s] Computing alignments... [51.835s] Deallocating buffers... [0.04s] Loading trace points... [0.093s] Sorting trace points... [1.721s] Computing alignments... [50.646s] Deallocating buffers... [0.022s] Loading trace points... [0.059s] Sorting trace points... [1.773s] Computing alignments... [50.575s] Deallocating buffers... [0.031s] Loading trace points... [0.063s] Sorting trace points... [1.402s] Computing alignments... [54.929s] Deallocating buffers... [0.034s] Loading trace points... [0.489s] Sorting trace points... [1.739s] Computing alignments... [53.281s] Deallocating buffers... [0.039s] Loading trace points... [0.076s] Sorting trace points... [1.767s] Computing alignments... [52.3s] Deallocating buffers... [0.041s] Loading trace points... [0.003s] Sorting trace points... [1.788s] Computing alignments... [52.975s] Deallocating buffers... [0.064s] Loading trace points... [0.052s] Sorting trace points... [1.731s] Computing alignments... [54.361s] Deallocating buffers... [0.031s] Loading trace points... [0.08s] Sorting trace points... [1.75s] Computing alignments... [51.139s] Deallocating buffers... [0.036s] Loading trace points... [0.277s] Sorting trace points... [1.715s] Computing alignments... [54.936s] Deallocating buffers... [0.033s] Loading trace points... [0.079s] Sorting trace points... [1.794s] Computing alignments... [52.441s] Deallocating buffers... [0.032s] Loading trace points... [0.001s] Sorting trace points... [1.781s] Computing alignments... [54.469s] Deallocating buffers... [0.037s] Loading trace points... [0.044s] Sorting trace points... [1.67s] Computing alignments... [50.663s] Deallocating buffers... [0.03s] Loading trace points... [0.071s] Sorting trace points... [1.698s] Computing alignments... [51.785s] Deallocating buffers... [0.039s] Loading trace points... [0.041s] Sorting trace points... [1.746s] Computing alignments... [50.468s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.595s] Computing alignments... [52.22s] Deallocating buffers... [0.03s] Loading trace points... [0s] [877.361s] Deallocating reference... [0.086s] Loading reference sequences... [250.106s] Masking reference... [30.865s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.908s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.296s] Building query seed array... [1.613s] Computing hash join... [5.001s] Masking low complexity seeds... [0.171s] Searching alignments... [421.211s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.363s] Building query seed array... [1.735s] Computing hash join... [5.465s] Masking low complexity seeds... [0.181s] Searching alignments... [171.719s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.267s] Building query seed array... [1.748s] Computing hash join... [5.173s] Masking low complexity seeds... [0.174s] Searching alignments... [132.55s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.048s] Building query seed array... [1.551s] Computing hash join... [5.294s] Masking low complexity seeds... [0.176s] Searching alignments... [129.528s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.011s] Building query seed array... [1.369s] Computing hash join... [4.932s] Masking low complexity seeds... [0.168s] Searching alignments... [198.909s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.06s] Building query seed array... [1.539s] Computing hash join... [4.755s] Masking low complexity seeds... [0.157s] Searching alignments... [150.102s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.229s] Building query seed array... [1.658s] Computing hash join... [5.111s] Masking low complexity seeds... [0.166s] Searching alignments... [112.732s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.039s] Building query seed array... [1.439s] Computing hash join... [4.701s] Masking low complexity seeds... [0.167s] Searching alignments... [114.945s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [1.048s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.855s] Sorting trace points... [1.802s] Computing alignments... [54.572s] Deallocating buffers... [0.053s] Loading trace points... [0.064s] Sorting trace points... [1.572s] Computing alignments... [53.264s] Deallocating buffers... [0.055s] Loading trace points... [0.072s] Sorting trace points... [1.709s] Computing alignments... [53.122s] Deallocating buffers... [0.048s] Loading trace points... [0.002s] Sorting trace points... [1.717s] Computing alignments... [57.96s] Deallocating buffers... [0.048s] Loading trace points... [0.066s] Sorting trace points... [1.718s] Computing alignments... [56.326s] Deallocating buffers... [0.048s] Loading trace points... [0.062s] Sorting trace points... [1.576s] Computing alignments... [55.287s] Deallocating buffers... [0.053s] Loading trace points... [0.078s] Sorting trace points... [1.333s] Computing alignments... [56.174s] Deallocating buffers... [0.037s] Loading trace points... [0.081s] Sorting trace points... [1.356s] Computing alignments... [56.792s] Deallocating buffers... [0.046s] Loading trace points... [0.066s] Sorting trace points... [1.273s] Computing alignments... [54.097s] Deallocating buffers... [0.045s] Loading trace points... [0.086s] Sorting trace points... [1.315s] Computing alignments... [58.605s] Deallocating buffers... [0.047s] Loading trace points... [0.075s] Sorting trace points... [1.329s] Computing alignments... [55.28s] Deallocating buffers... [0.044s] Loading trace points... [0.058s] Sorting trace points... [1.664s] Computing alignments... [57.368s] Deallocating buffers... [0.053s] Loading trace points... [0.066s] Sorting trace points... [1.685s] Computing alignments... [52.993s] Deallocating buffers... [0.05s] Loading trace points... [0.047s] Sorting trace points... [1.715s] Computing alignments... [55.019s] Deallocating buffers... [0.048s] Loading trace points... [0.052s] Sorting trace points... [1.373s] Computing alignments... [53.524s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [1.64s] Computing alignments... [54.793s] Deallocating buffers... [0.051s] Loading trace points... [0s] [920.578s] Deallocating reference... [0.099s] Loading reference sequences... [256.877s] Masking reference... [31.275s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.917s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.517s] Building query seed array... [1.582s] Computing hash join... [4.74s] Masking low complexity seeds... [0.168s] Searching alignments... [421.006s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.029s] Building query seed array... [1.736s] Computing hash join... [5.281s] Masking low complexity seeds... [0.169s] Searching alignments... [170.232s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.517s] Building query seed array... [1.828s] Computing hash join... [5.311s] Masking low complexity seeds... [0.18s] Searching alignments... [132.559s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.062s] Building query seed array... [1.481s] Computing hash join... [4.821s] Masking low complexity seeds... [0.166s] Searching alignments... [129.103s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.989s] Building query seed array... [1.374s] Computing hash join... [4.948s] Masking low complexity seeds... [0.16s] Searching alignments... [195.599s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.151s] Building query seed array... [1.58s] Computing hash join... [4.819s] Masking low complexity seeds... [0.157s] Searching alignments... [151.195s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.292s] Building query seed array... [1.639s] Computing hash join... [4.695s] Masking low complexity seeds... [0.164s] Searching alignments... [110.711s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.781s] Building query seed array... [1.375s] Computing hash join... [5.082s] Masking low complexity seeds... [0.163s] Searching alignments... [117.541s] Deallocating memory... [0s] Deallocating buffers... [0.158s] Clearing query masking... [1.088s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [8.949s] Sorting trace points... [1.737s] Computing alignments... [53.052s] Deallocating buffers... [0.03s] Loading trace points... [0.051s] Sorting trace points... [1.674s] Computing alignments... [52.013s] Deallocating buffers... [0.039s] Loading trace points... [0.102s] Sorting trace points... [1.705s] Computing alignments... [52.351s] Deallocating buffers... [0.03s] Loading trace points... [0.071s] Sorting trace points... [1.499s] Computing alignments... [56.516s] Deallocating buffers... [0.037s] Loading trace points... [0.064s] Sorting trace points... [1.258s] Computing alignments... [54.546s] Deallocating buffers... [0.033s] Loading trace points... [0.067s] Sorting trace points... [1.756s] Computing alignments... [53.899s] Deallocating buffers... [0.032s] Loading trace points... [0.066s] Sorting trace points... [1.707s] Computing alignments... [54.543s] Deallocating buffers... [0.031s] Loading trace points... [0.695s] Sorting trace points... [1.775s] Computing alignments... [55.186s] Deallocating buffers... [0.031s] Loading trace points... [0.069s] Sorting trace points... [1.651s] Computing alignments... [53.194s] Deallocating buffers... [0.04s] Loading trace points... [0.076s] Sorting trace points... [1.582s] Computing alignments... [55.997s] Deallocating buffers... [0.037s] Loading trace points... [0.075s] Sorting trace points... [1.821s] Computing alignments... [53.383s] Deallocating buffers... [0.153s] Loading trace points... [0.069s] Sorting trace points... [1.741s] Computing alignments... [55.657s] Deallocating buffers... [0.037s] Loading trace points... [0.057s] Sorting trace points... [1.775s] Computing alignments... [52.343s] Deallocating buffers... [0.03s] Loading trace points... [0.002s] Sorting trace points... [1.701s] Computing alignments... [53.82s] Deallocating buffers... [0.03s] Loading trace points... [0.059s] Sorting trace points... [1.703s] Computing alignments... [52.702s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.335s] Computing alignments... [53.095s] Deallocating buffers... [0.026s] Loading trace points... [0s] [899.943s] Deallocating reference... [0.057s] Loading reference sequences... [29.075s] Masking reference... [32.131s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.566s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.448s] Building query seed array... [1.543s] Computing hash join... [4.897s] Masking low complexity seeds... [0.171s] Searching alignments... [413.859s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.221s] Building query seed array... [1.766s] Computing hash join... [5.297s] Masking low complexity seeds... [0.171s] Searching alignments... [170.754s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.32s] Building query seed array... [1.823s] Computing hash join... [5.326s] Masking low complexity seeds... [0.186s] Searching alignments... [134.183s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.794s] Building query seed array... [1.462s] Computing hash join... [5.054s] Masking low complexity seeds... [0.173s] Searching alignments... [129.687s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.941s] Building query seed array... [1.339s] Computing hash join... [5.118s] Masking low complexity seeds... [0.163s] Searching alignments... [196.602s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.471s] Building query seed array... [1.608s] Computing hash join... [5.067s] Masking low complexity seeds... [0.158s] Searching alignments... [149.667s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.391s] Building query seed array... [1.695s] Computing hash join... [5.256s] Masking low complexity seeds... [0.165s] Searching alignments... [109.968s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.039s] Building query seed array... [1.455s] Computing hash join... [5.036s] Masking low complexity seeds... [0.164s] Searching alignments... [115.596s] Deallocating memory... [0s] Deallocating buffers... [0.146s] Clearing query masking... [1.069s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.088s] Sorting trace points... [1.255s] Computing alignments... [53.372s] Deallocating buffers... [0.033s] Loading trace points... [0.053s] Sorting trace points... [1.65s] Computing alignments... [52.253s] Deallocating buffers... [0.026s] Loading trace points... [0.441s] Sorting trace points... [1.825s] Computing alignments... [52.406s] Deallocating buffers... [0.084s] Loading trace points... [0.087s] Sorting trace points... [1.5s] Computing alignments... [56.751s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.769s] Computing alignments... [55.251s] Deallocating buffers... [0.026s] Loading trace points... [0.051s] Sorting trace points... [1.73s] Computing alignments... [54.896s] Deallocating buffers... [0.035s] Loading trace points... [0.062s] Sorting trace points... [1.675s] Computing alignments... [54.84s] Deallocating buffers... [0.034s] Loading trace points... [0.046s] Sorting trace points... [1.721s] Computing alignments... [55.569s] Deallocating buffers... [0.031s] Loading trace points... [0.073s] Sorting trace points... [1.658s] Computing alignments... [53.679s] Deallocating buffers... [0.036s] Loading trace points... [0.057s] Sorting trace points... [1.773s] Computing alignments... [56.533s] Deallocating buffers... [0.038s] Loading trace points... [0.067s] Sorting trace points... [1.266s] Computing alignments... [53.734s] Deallocating buffers... [0.024s] Loading trace points... [0.055s] Sorting trace points... [1.759s] Computing alignments... [56.048s] Deallocating buffers... [0.026s] Loading trace points... [0.131s] Sorting trace points... [1.71s] Computing alignments... [52.356s] Deallocating buffers... [0.03s] Loading trace points... [0.001s] Sorting trace points... [1.76s] Computing alignments... [54.365s] Deallocating buffers... [0.04s] Loading trace points... [0.046s] Sorting trace points... [1.365s] Computing alignments... [53.581s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.664s] Computing alignments... [53.728s] Deallocating buffers... [0.035s] Loading trace points... [0s] [906.403s] Deallocating reference... [0.085s] Loading reference sequences... [31.411s] Masking reference... [31.176s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.648s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.36s] Building query seed array... [1.654s] Computing hash join... [5.221s] Masking low complexity seeds... [0.173s] Searching alignments... [419.703s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.441s] Building query seed array... [2.166s] Computing hash join... [5.542s] Masking low complexity seeds... [0.185s] Searching alignments... [170.315s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.716s] Building query seed array... [1.976s] Computing hash join... [5.067s] Masking low complexity seeds... [0.163s] Searching alignments... [132.201s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.29s] Building query seed array... [1.747s] Computing hash join... [4.726s] Masking low complexity seeds... [0.166s] Searching alignments... [128.61s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.402s] Building query seed array... [1.588s] Computing hash join... [5.203s] Masking low complexity seeds... [0.182s] Searching alignments... [195.118s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.227s] Building query seed array... [1.75s] Computing hash join... [4.708s] Masking low complexity seeds... [0.169s] Searching alignments... [148.325s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.948s] Building query seed array... [1.847s] Computing hash join... [4.845s] Masking low complexity seeds... [0.155s] Searching alignments... [109.559s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.129s] Building query seed array... [1.491s] Computing hash join... [4.56s] Masking low complexity seeds... [0.158s] Searching alignments... [114.382s] Deallocating memory... [0s] Deallocating buffers... [0.521s] Clearing query masking... [1.021s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.974s] Sorting trace points... [1.751s] Computing alignments... [51.286s] Deallocating buffers... [0.034s] Loading trace points... [0.058s] Sorting trace points... [1.231s] Computing alignments... [50.256s] Deallocating buffers... [0.038s] Loading trace points... [0.051s] Sorting trace points... [1.688s] Computing alignments... [50.302s] Deallocating buffers... [0.036s] Loading trace points... [0.057s] Sorting trace points... [1.705s] Computing alignments... [55.008s] Deallocating buffers... [0.032s] Loading trace points... [0.082s] Sorting trace points... [1.348s] Computing alignments... [53.39s] Deallocating buffers... [0.032s] Loading trace points... [0.001s] Sorting trace points... [1.601s] Computing alignments... [51.976s] Deallocating buffers... [0.038s] Loading trace points... [0.062s] Sorting trace points... [1.25s] Computing alignments... [52.939s] Deallocating buffers... [0.035s] Loading trace points... [0.046s] Sorting trace points... [1.721s] Computing alignments... [53.712s] Deallocating buffers... [0.035s] Loading trace points... [0.067s] Sorting trace points... [1.564s] Computing alignments... [51.26s] Deallocating buffers... [0.032s] Loading trace points... [0.107s] Sorting trace points... [1.744s] Computing alignments... [54.076s] Deallocating buffers... [0.036s] Loading trace points... [0.047s] Sorting trace points... [1.763s] Computing alignments... [51.771s] Deallocating buffers... [0.044s] Loading trace points... [0.065s] Sorting trace points... [1.783s] Computing alignments... [53.858s] Deallocating buffers... [0.036s] Loading trace points... [0.103s] Sorting trace points... [1.37s] Computing alignments... [50.327s] Deallocating buffers... [0.033s] Loading trace points... [0.072s] Sorting trace points... [1.524s] Computing alignments... [51.892s] Deallocating buffers... [0.031s] Loading trace points... [0.091s] Sorting trace points... [1.816s] Computing alignments... [50.57s] Deallocating buffers... [0.186s] Loading trace points... [0s] Sorting trace points... [1.592s] Computing alignments... [51.496s] Deallocating buffers... [0.034s] Loading trace points... [0s] [870.322s] Deallocating reference... [0.077s] Loading reference sequences... [29.79s] Masking reference... [30.985s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.927s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.022s] Building query seed array... [1.575s] Computing hash join... [5.964s] Masking low complexity seeds... [0.19s] Searching alignments... [425.324s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.548s] Building query seed array... [1.933s] Computing hash join... [5.531s] Masking low complexity seeds... [0.205s] Searching alignments... [174.18s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.084s] Building query seed array... [2.037s] Computing hash join... [4.843s] Masking low complexity seeds... [0.166s] Searching alignments... [133.964s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.71s] Building query seed array... [1.662s] Computing hash join... [5.767s] Masking low complexity seeds... [0.205s] Searching alignments... [128.861s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.534s] Building query seed array... [1.551s] Computing hash join... [5.405s] Masking low complexity seeds... [0.168s] Searching alignments... [198.477s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.569s] Building query seed array... [1.689s] Computing hash join... [4.851s] Masking low complexity seeds... [0.196s] Searching alignments... [153.785s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.808s] Building query seed array... [1.853s] Computing hash join... [5.871s] Masking low complexity seeds... [0.206s] Searching alignments... [112.175s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.677s] Building query seed array... [1.541s] Computing hash join... [4.803s] Masking low complexity seeds... [0.156s] Searching alignments... [119.653s] Deallocating memory... [0s] Deallocating buffers... [1.87s] Clearing query masking... [1.004s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.853s] Sorting trace points... [1.607s] Computing alignments... [52.06s] Deallocating buffers... [0.046s] Loading trace points... [0.058s] Sorting trace points... [1.679s] Computing alignments... [50.866s] Deallocating buffers... [0.034s] Loading trace points... [0.051s] Sorting trace points... [1.671s] Computing alignments... [50.312s] Deallocating buffers... [0.033s] Loading trace points... [0.07s] Sorting trace points... [1.746s] Computing alignments... [55.289s] Deallocating buffers... [0.041s] Loading trace points... [0.002s] Sorting trace points... [1.714s] Computing alignments... [53.118s] Deallocating buffers... [0.027s] Loading trace points... [0.034s] Sorting trace points... [1.691s] Computing alignments... [52.416s] Deallocating buffers... [0.047s] Loading trace points... [0.079s] Sorting trace points... [1.698s] Computing alignments... [52.925s] Deallocating buffers... [0.041s] Loading trace points... [0.053s] Sorting trace points... [1.707s] Computing alignments... [54.253s] Deallocating buffers... [0.041s] Loading trace points... [0.093s] Sorting trace points... [1.713s] Computing alignments... [51.165s] Deallocating buffers... [0.045s] Loading trace points... [0.073s] Sorting trace points... [1.803s] Computing alignments... [55.396s] Deallocating buffers... [0.044s] Loading trace points... [0.073s] Sorting trace points... [1.445s] Computing alignments... [52.603s] Deallocating buffers... [0.04s] Loading trace points... [0.072s] Sorting trace points... [1.846s] Computing alignments... [54.645s] Deallocating buffers... [0.037s] Loading trace points... [0.08s] Sorting trace points... [1.671s] Computing alignments... [50.727s] Deallocating buffers... [0.041s] Loading trace points... [0.039s] Sorting trace points... [1.331s] Computing alignments... [52.346s] Deallocating buffers... [0.044s] Loading trace points... [0.05s] Sorting trace points... [1.575s] Computing alignments... [51.259s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.671s] Computing alignments... [52.026s] Deallocating buffers... [0.039s] Loading trace points... [0s] [878.393s] Deallocating reference... [0.078s] Loading reference sequences... [28.967s] Masking reference... [31.332s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.654s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.465s] Building query seed array... [1.564s] Computing hash join... [5.163s] Masking low complexity seeds... [0.174s] Searching alignments... [421.91s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.44s] Building query seed array... [1.981s] Computing hash join... [5.36s] Masking low complexity seeds... [0.192s] Searching alignments... [169.703s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.148s] Building query seed array... [1.883s] Computing hash join... [4.853s] Masking low complexity seeds... [0.17s] Searching alignments... [133.711s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.736s] Building query seed array... [1.546s] Computing hash join... [4.914s] Masking low complexity seeds... [0.171s] Searching alignments... [128.312s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.145s] Building query seed array... [1.449s] Computing hash join... [4.704s] Masking low complexity seeds... [0.18s] Searching alignments... [195.834s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.984s] Building query seed array... [1.648s] Computing hash join... [5.171s] Masking low complexity seeds... [0.168s] Searching alignments... [148.645s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.682s] Building query seed array... [1.77s] Computing hash join... [5.365s] Masking low complexity seeds... [0.169s] Searching alignments... [112.187s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.706s] Building query seed array... [1.448s] Computing hash join... [5.189s] Masking low complexity seeds... [0.17s] Searching alignments... [115.472s] Deallocating memory... [0s] Deallocating buffers... [0.328s] Clearing query masking... [1.021s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.918s] Sorting trace points... [1.718s] Computing alignments... [47.151s] Deallocating buffers... [0.034s] Loading trace points... [0.083s] Sorting trace points... [1.629s] Computing alignments... [46.806s] Deallocating buffers... [0.026s] Loading trace points... [0.047s] Sorting trace points... [1.754s] Computing alignments... [47.291s] Deallocating buffers... [0.025s] Loading trace points... [0.055s] Sorting trace points... [1.784s] Computing alignments... [50.339s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.66s] Computing alignments... [49.037s] Deallocating buffers... [0.026s] Loading trace points... [0.05s] Sorting trace points... [1.48s] Computing alignments... [48.78s] Deallocating buffers... [0.024s] Loading trace points... [0.058s] Sorting trace points... [1.692s] Computing alignments... [48.946s] Deallocating buffers... [0.026s] Loading trace points... [0.04s] Sorting trace points... [1.74s] Computing alignments... [49.014s] Deallocating buffers... [0.031s] Loading trace points... [0.067s] Sorting trace points... [1.644s] Computing alignments... [47.114s] Deallocating buffers... [0.035s] Loading trace points... [0.055s] Sorting trace points... [1.754s] Computing alignments... [49.776s] Deallocating buffers... [0.034s] Loading trace points... [0.069s] Sorting trace points... [1.424s] Computing alignments... [48.682s] Deallocating buffers... [0.037s] Loading trace points... [0.087s] Sorting trace points... [1.8s] Computing alignments... [50.25s] Deallocating buffers... [0.031s] Loading trace points... [0.074s] Sorting trace points... [1.668s] Computing alignments... [47.057s] Deallocating buffers... [0.02s] Loading trace points... [0.001s] Sorting trace points... [1.713s] Computing alignments... [48.013s] Deallocating buffers... [0.038s] Loading trace points... [0.047s] Sorting trace points... [1.833s] Computing alignments... [47.078s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.575s] Computing alignments... [47.907s] Deallocating buffers... [0.038s] Loading trace points... [0s] [810.347s] Deallocating reference... [0.074s] Loading reference sequences... [29.305s] Masking reference... [32.248s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.421s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.553s] Building query seed array... [1.596s] Computing hash join... [5.178s] Masking low complexity seeds... [0.178s] Searching alignments... [420.029s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.67s] Building query seed array... [1.967s] Computing hash join... [5.326s] Masking low complexity seeds... [0.177s] Searching alignments... [173.592s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.978s] Building query seed array... [1.911s] Computing hash join... [4.91s] Masking low complexity seeds... [0.165s] Searching alignments... [131.836s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.345s] Building query seed array... [1.614s] Computing hash join... [4.853s] Masking low complexity seeds... [0.168s] Searching alignments... [128.256s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.986s] Building query seed array... [1.5s] Computing hash join... [5.031s] Masking low complexity seeds... [0.164s] Searching alignments... [197.247s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.912s] Building query seed array... [1.7s] Computing hash join... [5.192s] Masking low complexity seeds... [0.161s] Searching alignments... [152.301s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.123s] Building query seed array... [1.801s] Computing hash join... [4.77s] Masking low complexity seeds... [0.174s] Searching alignments... [111.338s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.057s] Building query seed array... [1.492s] Computing hash join... [4.75s] Masking low complexity seeds... [0.159s] Searching alignments... [117.247s] Deallocating memory... [0s] Deallocating buffers... [0.386s] Clearing query masking... [1.062s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.904s] Sorting trace points... [1.803s] Computing alignments... [56.158s] Deallocating buffers... [0.054s] Loading trace points... [0.067s] Sorting trace points... [1.677s] Computing alignments... [54.82s] Deallocating buffers... [0.048s] Loading trace points... [0.103s] Sorting trace points... [1.666s] Computing alignments... [54.491s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [1.81s] Computing alignments... [59.862s] Deallocating buffers... [0.059s] Loading trace points... [0.065s] Sorting trace points... [1.711s] Computing alignments... [57.697s] Deallocating buffers... [0.055s] Loading trace points... [0.065s] Sorting trace points... [1.749s] Computing alignments... [56.321s] Deallocating buffers... [0.052s] Loading trace points... [0.068s] Sorting trace points... [1.705s] Computing alignments... [57.279s] Deallocating buffers... [0.047s] Loading trace points... [0.065s] Sorting trace points... [1.799s] Computing alignments... [58.468s] Deallocating buffers... [0.054s] Loading trace points... [0.125s] Sorting trace points... [1.31s] Computing alignments... [55.824s] Deallocating buffers... [0.053s] Loading trace points... [0.077s] Sorting trace points... [1.315s] Computing alignments... [60.173s] Deallocating buffers... [0.051s] Loading trace points... [0.077s] Sorting trace points... [1.764s] Computing alignments... [55.976s] Deallocating buffers... [0.045s] Loading trace points... [0.094s] Sorting trace points... [1.762s] Computing alignments... [58.569s] Deallocating buffers... [0.046s] Loading trace points... [0.081s] Sorting trace points... [1.691s] Computing alignments... [53.899s] Deallocating buffers... [0.048s] Loading trace points... [0.061s] Sorting trace points... [1.777s] Computing alignments... [56.349s] Deallocating buffers... [0.046s] Loading trace points... [0.064s] Sorting trace points... [1.335s] Computing alignments... [55.161s] Deallocating buffers... [0.052s] Loading trace points... [0s] Sorting trace points... [1.298s] Computing alignments... [56.165s] Deallocating buffers... [0.062s] Loading trace points... [0s] [944.26s] Deallocating reference... [0.087s] Loading reference sequences... [250.171s] Masking reference... [30.899s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.555s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.156s] Building query seed array... [1.586s] Computing hash join... [5.108s] Masking low complexity seeds... [0.172s] Searching alignments... [419.93s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.332s] Building query seed array... [2.107s] Computing hash join... [5.206s] Masking low complexity seeds... [0.176s] Searching alignments... [174.377s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.15s] Building query seed array... [1.926s] Computing hash join... [4.712s] Masking low complexity seeds... [0.166s] Searching alignments... [132.939s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.675s] Building query seed array... [1.795s] Computing hash join... [4.787s] Masking low complexity seeds... [0.17s] Searching alignments... [129.982s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.332s] Building query seed array... [1.486s] Computing hash join... [4.895s] Masking low complexity seeds... [0.166s] Searching alignments... [195.202s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.704s] Building query seed array... [1.729s] Computing hash join... [4.747s] Masking low complexity seeds... [0.175s] Searching alignments... [154.039s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.442s] Building query seed array... [1.816s] Computing hash join... [4.687s] Masking low complexity seeds... [0.197s] Searching alignments... [111.321s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.246s] Building query seed array... [1.514s] Computing hash join... [5.068s] Masking low complexity seeds... [0.168s] Searching alignments... [119.339s] Deallocating memory... [0s] Deallocating buffers... [0.63s] Clearing query masking... [0.97s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [8.947s] Sorting trace points... [1.767s] Computing alignments... [54.926s] Deallocating buffers... [0.074s] Loading trace points... [0.039s] Sorting trace points... [1.707s] Computing alignments... [53.508s] Deallocating buffers... [0.052s] Loading trace points... [0.079s] Sorting trace points... [1.319s] Computing alignments... [52.915s] Deallocating buffers... [0.056s] Loading trace points... [0.279s] Sorting trace points... [1.766s] Computing alignments... [57.513s] Deallocating buffers... [0.054s] Loading trace points... [0.071s] Sorting trace points... [1.757s] Computing alignments... [55.957s] Deallocating buffers... [0.051s] Loading trace points... [0.058s] Sorting trace points... [1.525s] Computing alignments... [55.287s] Deallocating buffers... [0.058s] Loading trace points... [0.045s] Sorting trace points... [1.5s] Computing alignments... [55.122s] Deallocating buffers... [0.044s] Loading trace points... [0.062s] Sorting trace points... [1.71s] Computing alignments... [56.861s] Deallocating buffers... [0.039s] Loading trace points... [0.001s] Sorting trace points... [1.359s] Computing alignments... [54.073s] Deallocating buffers... [0.053s] Loading trace points... [0.091s] Sorting trace points... [1.544s] Computing alignments... [58.154s] Deallocating buffers... [0.059s] Loading trace points... [0s] Sorting trace points... [1.709s] Computing alignments... [54.857s] Deallocating buffers... [0.054s] Loading trace points... [0.061s] Sorting trace points... [1.373s] Computing alignments... [56.961s] Deallocating buffers... [0.044s] Loading trace points... [0.058s] Sorting trace points... [1.724s] Computing alignments... [52.733s] Deallocating buffers... [0.042s] Loading trace points... [0.059s] Sorting trace points... [1.614s] Computing alignments... [54.902s] Deallocating buffers... [0.05s] Loading trace points... [0.052s] Sorting trace points... [1.761s] Computing alignments... [53.722s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [1.7s] Computing alignments... [54.289s] Deallocating buffers... [0.056s] Loading trace points... [0s] [918.601s] Deallocating reference... [0.104s] Loading reference sequences... [31.398s] Masking reference... [32.267s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.438s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.474s] Building query seed array... [1.58s] Computing hash join... [5.411s] Masking low complexity seeds... [0.169s] Searching alignments... [420.517s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.021s] Building query seed array... [2.15s] Computing hash join... [4.778s] Masking low complexity seeds... [0.168s] Searching alignments... [173.899s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.774s] Building query seed array... [1.909s] Computing hash join... [5.539s] Masking low complexity seeds... [0.173s] Searching alignments... [133.207s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.292s] Building query seed array... [1.644s] Computing hash join... [4.813s] Masking low complexity seeds... [0.173s] Searching alignments... [128.672s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.211s] Building query seed array... [1.508s] Computing hash join... [5.241s] Masking low complexity seeds... [0.177s] Searching alignments... [198.304s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.51s] Building query seed array... [1.691s] Computing hash join... [5.286s] Masking low complexity seeds... [0.159s] Searching alignments... [154.082s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.438s] Building query seed array... [1.768s] Computing hash join... [5.011s] Masking low complexity seeds... [0.166s] Searching alignments... [111.425s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.34s] Building query seed array... [1.59s] Computing hash join... [5.275s] Masking low complexity seeds... [0.174s] Searching alignments... [114.978s] Deallocating memory... [0s] Deallocating buffers... [0.929s] Clearing query masking... [1.052s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.431s] Sorting trace points... [1.572s] Computing alignments... [51.31s] Deallocating buffers... [0.03s] Loading trace points... [0.068s] Sorting trace points... [1.654s] Computing alignments... [50.725s] Deallocating buffers... [0.045s] Loading trace points... [0.053s] Sorting trace points... [1.668s] Computing alignments... [50.783s] Deallocating buffers... [0.03s] Loading trace points... [0.094s] Sorting trace points... [1.706s] Computing alignments... [54.695s] Deallocating buffers... [0.032s] Loading trace points... [0.055s] Sorting trace points... [1.723s] Computing alignments... [53.167s] Deallocating buffers... [0.035s] Loading trace points... [0.054s] Sorting trace points... [1.71s] Computing alignments... [52.814s] Deallocating buffers... [0.036s] Loading trace points... [0.07s] Sorting trace points... [1.687s] Computing alignments... [53.237s] Deallocating buffers... [0.035s] Loading trace points... [0.038s] Sorting trace points... [1.733s] Computing alignments... [53.532s] Deallocating buffers... [0.031s] Loading trace points... [0.078s] Sorting trace points... [1.687s] Computing alignments... [51.84s] Deallocating buffers... [0.03s] Loading trace points... [0.057s] Sorting trace points... [1.772s] Computing alignments... [54.974s] Deallocating buffers... [0.036s] Loading trace points... [0.058s] Sorting trace points... [1.71s] Computing alignments... [51.792s] Deallocating buffers... [0.031s] Loading trace points... [0.08s] Sorting trace points... [1.393s] Computing alignments... [54.032s] Deallocating buffers... [0.023s] Loading trace points... [0.064s] Sorting trace points... [1.692s] Computing alignments... [50.675s] Deallocating buffers... [0.029s] Loading trace points... [0.043s] Sorting trace points... [1.672s] Computing alignments... [52.621s] Deallocating buffers... [0.04s] Loading trace points... [0.048s] Sorting trace points... [1.602s] Computing alignments... [50.776s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.621s] Computing alignments... [51.881s] Deallocating buffers... [0.034s] Loading trace points... [0s] [876.42s] Deallocating reference... [0.065s] Loading reference sequences... [25.541s] Masking reference... [25.26s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.006s] Building reference histograms... [26.641s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.286s] Building query seed array... [1.594s] Computing hash join... [4.022s] Masking low complexity seeds... [0.16s] Searching alignments... [337.816s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.609s] Building query seed array... [1.704s] Computing hash join... [4.364s] Masking low complexity seeds... [0.162s] Searching alignments... [137.806s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.889s] Building query seed array... [1.782s] Computing hash join... [3.868s] Masking low complexity seeds... [0.152s] Searching alignments... [106.666s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.189s] Building query seed array... [1.449s] Computing hash join... [3.846s] Masking low complexity seeds... [0.156s] Searching alignments... [105.184s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [7.931s] Building query seed array... [1.348s] Computing hash join... [3.803s] Masking low complexity seeds... [0.156s] Searching alignments... [160.337s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.89s] Building query seed array... [1.534s] Computing hash join... [3.937s] Masking low complexity seeds... [0.151s] Searching alignments... [122.843s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.798s] Building query seed array... [1.65s] Computing hash join... [3.782s] Masking low complexity seeds... [0.145s] Searching alignments... [89.935s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.486s] Building query seed array... [1.443s] Computing hash join... [3.782s] Masking low complexity seeds... [0.142s] Searching alignments... [94.973s] Deallocating memory... [0s] Deallocating buffers... [0.118s] Clearing query masking... [1.086s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.708s] Sorting trace points... [1.424s] Computing alignments... [39.811s] Deallocating buffers... [0.025s] Loading trace points... [0.073s] Sorting trace points... [1.357s] Computing alignments... [39.271s] Deallocating buffers... [0.018s] Loading trace points... [0.722s] Sorting trace points... [1.389s] Computing alignments... [39.718s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.11s] Computing alignments... [42.397s] Deallocating buffers... [0.028s] Loading trace points... [0.049s] Sorting trace points... [1.417s] Computing alignments... [40.82s] Deallocating buffers... [0.025s] Loading trace points... [0.06s] Sorting trace points... [1.327s] Computing alignments... [40.56s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.467s] Computing alignments... [40.74s] Deallocating buffers... [0.026s] Loading trace points... [0.077s] Sorting trace points... [1.09s] Computing alignments... [41.763s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.355s] Computing alignments... [39.441s] Deallocating buffers... [0.024s] Loading trace points... [0.067s] Sorting trace points... [1.161s] Computing alignments... [42.329s] Deallocating buffers... [0.02s] Loading trace points... [0.065s] Sorting trace points... [1.429s] Computing alignments... [40.578s] Deallocating buffers... [0.025s] Loading trace points... [0.05s] Sorting trace points... [1.395s] Computing alignments... [42.09s] Deallocating buffers... [0.03s] Loading trace points... [0.208s] Sorting trace points... [1.234s] Computing alignments... [39.308s] Deallocating buffers... [0.027s] Loading trace points... [0.061s] Sorting trace points... [1.195s] Computing alignments... [39.944s] Deallocating buffers... [0.019s] Loading trace points... [0.055s] Sorting trace points... [1.276s] Computing alignments... [39.226s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.071s] Computing alignments... [40.222s] Deallocating buffers... [0.026s] Loading trace points... [0s] [678.749s] Deallocating reference... [0.067s] Loading reference sequences... [0.077s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [3297.98s] [3297.98s] Deallocating queries... [0.061s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.814s] [3.71s] Closing the database... [0s] Cleaning up... [0s] Total time = 39492.3s Reported 3433424672 pairwise alignments, 3433424672 HSPs. 4240909 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-06.trimmed.R2.fastq.gz complete: CH01-06.trimmed.R2.blastx.meganized.daa Now MEGANizing CH01-06.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH01-06.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (246.5s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,245.5s) Total reads: 4,240,909 With hits: 4,240,909 Alignments: 2,486,666,210 Assig. Taxonomy: 2,389,627 Assig. SEED: 100,443 Assig. EGGNOG: 20,714 Assig. GTDB: 181,645 Assig. EC: 394,626 Assig. INTERPRO2GO: 1,106,208 MinSupport set to: 2120 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 4,832 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.0s) Min-supp. changes: 3,407 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5.3s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 164 Class. SEED: 479 Class. EGGNOG: 1,601 Class. GTDB: 51 Class. EC: 2,295 Class. INTERPRO2GO: 8,451 Total time: 5,517s Peak memory: 38.6 of 195.3G MEGANization of CH01-06.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-14.trimmed.R1.fastq.gz... 98ff8791bc28f42cdce2979a4da15108 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-14.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-14.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.291s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.657s] Opening the output file... [0s] Loading query sequences... [131.761s] Masking queries... [36.035s] Algorithm: Double-indexed Building query histograms... [30.387s] Loading reference sequences... [28.977s] Masking reference... [32.021s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.026s] Building reference histograms... [32.844s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.576s] Building query seed array... [3.129s] Computing hash join... [6.672s] Masking low complexity seeds... [0.42s] Searching alignments... [846.655s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.547s] Building query seed array... [3.678s] Computing hash join... [6.55s] Masking low complexity seeds... [0.33s] Searching alignments... [350.405s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.984s] Building query seed array... [3.831s] Computing hash join... [6.563s] Masking low complexity seeds... [0.357s] Searching alignments... [271.663s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.707s] Building query seed array... [3.3s] Computing hash join... [5.755s] Masking low complexity seeds... [0.284s] Searching alignments... [266.9s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.813s] Building query seed array... [3.037s] Computing hash join... [5.456s] Masking low complexity seeds... [0.335s] Searching alignments... [390.777s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.371s] Building query seed array... [3.554s] Computing hash join... [5.857s] Masking low complexity seeds... [0.304s] Searching alignments... [302.151s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.502s] Building query seed array... [3.778s] Computing hash join... [5.688s] Masking low complexity seeds... [0.305s] Searching alignments... [224.179s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.149s] Building query seed array... [3.12s] Computing hash join... [5.607s] Masking low complexity seeds... [0.284s] Searching alignments... [233.647s] Deallocating memory... [0s] Deallocating buffers... [1.608s] Clearing query masking... [1.961s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.381s] Sorting trace points... [3.572s] Computing alignments... [88.549s] Deallocating buffers... [0.05s] Loading trace points... [0.075s] Sorting trace points... [3.955s] Computing alignments... [91.816s] Deallocating buffers... [0.701s] Loading trace points... [0.096s] Sorting trace points... [3.291s] Computing alignments... [90.841s] Deallocating buffers... [0.055s] Loading trace points... [0.042s] Sorting trace points... [4.624s] Computing alignments... [96.344s] Deallocating buffers... [0.88s] Loading trace points... [0.067s] Sorting trace points... [2.809s] Computing alignments... [90.067s] Deallocating buffers... [0.044s] Loading trace points... [0.099s] Sorting trace points... [4.092s] Computing alignments... [90.83s] Deallocating buffers... [0.559s] Loading trace points... [0.067s] Sorting trace points... [3.956s] Computing alignments... [91.907s] Deallocating buffers... [0.325s] Loading trace points... [0.077s] Sorting trace points... [4.257s] Computing alignments... [95.695s] Deallocating buffers... [0.304s] Loading trace points... [0.097s] Sorting trace points... [3.553s] Computing alignments... [92.074s] Deallocating buffers... [0.12s] Loading trace points... [0.079s] Sorting trace points... [2.685s] Computing alignments... [92.869s] Deallocating buffers... [0.208s] Loading trace points... [0.069s] Sorting trace points... [3.661s] Computing alignments... [92.747s] Deallocating buffers... [0.145s] Loading trace points... [0.071s] Sorting trace points... [4.393s] Computing alignments... [96.442s] Deallocating buffers... [0.785s] Loading trace points... [0.063s] Sorting trace points... [3.9s] Computing alignments... [92.533s] Deallocating buffers... [0.2s] Loading trace points... [0.069s] Sorting trace points... [3.966s] Computing alignments... [91.764s] Deallocating buffers... [0.268s] Loading trace points... [0.084s] Sorting trace points... [4.56s] Computing alignments... [92.869s] Deallocating buffers... [0.84s] Loading trace points... [0s] Sorting trace points... [3.784s] Computing alignments... [92.601s] Deallocating buffers... [0.242s] Loading trace points... [0s] [1566.35s] Deallocating reference... [0.068s] Loading reference sequences... [33.965s] Masking reference... [30.953s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.906s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.858s] Building query seed array... [3.176s] Computing hash join... [6.164s] Masking low complexity seeds... [0.294s] Searching alignments... [827.068s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.739s] Building query seed array... [4.216s] Computing hash join... [6.103s] Masking low complexity seeds... [0.335s] Searching alignments... [344.979s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.617s] Building query seed array... [3.917s] Computing hash join... [5.942s] Masking low complexity seeds... [0.332s] Searching alignments... [261.243s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.98s] Building query seed array... [3.295s] Computing hash join... [6.042s] Masking low complexity seeds... [0.313s] Searching alignments... [264.726s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.525s] Building query seed array... [3.048s] Computing hash join... [5.751s] Masking low complexity seeds... [0.341s] Searching alignments... [386.249s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.758s] Building query seed array... [3.462s] Computing hash join... [5.717s] Masking low complexity seeds... [0.309s] Searching alignments... [296.538s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.823s] Building query seed array... [3.698s] Computing hash join... [5.789s] Masking low complexity seeds... [0.298s] Searching alignments... [224.565s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.08s] Building query seed array... [3.184s] Computing hash join... [5.755s] Masking low complexity seeds... [0.288s] Searching alignments... [228.434s] Deallocating memory... [0s] Deallocating buffers... [1.254s] Clearing query masking... [2.033s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [17.212s] Sorting trace points... [3.603s] Computing alignments... [95.53s] Deallocating buffers... [0.075s] Loading trace points... [0.049s] Sorting trace points... [3.843s] Computing alignments... [99.211s] Deallocating buffers... [0.303s] Loading trace points... [0.05s] Sorting trace points... [3.911s] Computing alignments... [97.909s] Deallocating buffers... [0.738s] Loading trace points... [0.04s] Sorting trace points... [3.007s] Computing alignments... [102.828s] Deallocating buffers... [0.083s] Loading trace points... [0.06s] Sorting trace points... [3.373s] Computing alignments... [97.905s] Deallocating buffers... [0.631s] Loading trace points... [0.084s] Sorting trace points... [3.524s] Computing alignments... [96.541s] Deallocating buffers... [0.162s] Loading trace points... [0.1s] Sorting trace points... [3.082s] Computing alignments... [99.55s] Deallocating buffers... [0.37s] Loading trace points... [0.658s] Sorting trace points... [3.191s] Computing alignments... [101.275s] Deallocating buffers... [0.394s] Loading trace points... [0.07s] Sorting trace points... [2.651s] Computing alignments... [98.378s] Deallocating buffers... [0.077s] Loading trace points... [0.09s] Sorting trace points... [4.084s] Computing alignments... [99.384s] Deallocating buffers... [0.604s] Loading trace points... [0.059s] Sorting trace points... [2.645s] Computing alignments... [99.748s] Deallocating buffers... [0.078s] Loading trace points... [0.074s] Sorting trace points... [3.717s] Computing alignments... [102.408s] Deallocating buffers... [0.304s] Loading trace points... [0.072s] Sorting trace points... [4.077s] Computing alignments... [98.877s] Deallocating buffers... [0.359s] Loading trace points... [0.093s] Sorting trace points... [4.117s] Computing alignments... [98.729s] Deallocating buffers... [0.719s] Loading trace points... [0.048s] Sorting trace points... [3.244s] Computing alignments... [100.299s] Deallocating buffers... [0.185s] Loading trace points... [0s] Sorting trace points... [2.789s] Computing alignments... [100.175s] Deallocating buffers... [0.343s] Loading trace points... [0s] [1667.92s] Deallocating reference... [0.11s] Loading reference sequences... [29.044s] Masking reference... [30.986s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.969s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.259s] Building query seed array... [3.3s] Computing hash join... [6.991s] Masking low complexity seeds... [0.402s] Searching alignments... [841.28s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.506s] Building query seed array... [3.797s] Computing hash join... [5.942s] Masking low complexity seeds... [0.312s] Searching alignments... [349.367s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.107s] Building query seed array... [4.158s] Computing hash join... [5.762s] Masking low complexity seeds... [0.285s] Searching alignments... [267.9s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.41s] Building query seed array... [3.274s] Computing hash join... [5.761s] Masking low complexity seeds... [0.29s] Searching alignments... [266.607s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.007s] Building query seed array... [2.999s] Computing hash join... [5.216s] Masking low complexity seeds... [0.306s] Searching alignments... [397.288s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.915s] Building query seed array... [3.604s] Computing hash join... [6.233s] Masking low complexity seeds... [0.352s] Searching alignments... [308.751s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.783s] Building query seed array... [3.642s] Computing hash join... [5.831s] Masking low complexity seeds... [0.302s] Searching alignments... [222.292s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.386s] Building query seed array... [3.065s] Computing hash join... [5.825s] Masking low complexity seeds... [0.297s] Searching alignments... [234.167s] Deallocating memory... [0.002s] Deallocating buffers... [1.745s] Clearing query masking... [2.023s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.02s] Sorting trace points... [3.752s] Computing alignments... [93.46s] Deallocating buffers... [0.315s] Loading trace points... [0.044s] Sorting trace points... [3.577s] Computing alignments... [96.069s] Deallocating buffers... [0.07s] Loading trace points... [0.039s] Sorting trace points... [3.273s] Computing alignments... [96.803s] Deallocating buffers... [0.482s] Loading trace points... [0.066s] Sorting trace points... [3.535s] Computing alignments... [100.703s] Deallocating buffers... [0.476s] Loading trace points... [0.055s] Sorting trace points... [2.681s] Computing alignments... [96.24s] Deallocating buffers... [0.136s] Loading trace points... [0.061s] Sorting trace points... [3.061s] Computing alignments... [94.692s] Deallocating buffers... [0.291s] Loading trace points... [0.05s] Sorting trace points... [3.029s] Computing alignments... [97.492s] Deallocating buffers... [0.294s] Loading trace points... [0.056s] Sorting trace points... [3.492s] Computing alignments... [99.17s] Deallocating buffers... [0.258s] Loading trace points... [0.063s] Sorting trace points... [2.858s] Computing alignments... [97.124s] Deallocating buffers... [0.207s] Loading trace points... [0.047s] Sorting trace points... [2.787s] Computing alignments... [97.639s] Deallocating buffers... [0.202s] Loading trace points... [0.056s] Sorting trace points... [3.609s] Computing alignments... [98.408s] Deallocating buffers... [0.431s] Loading trace points... [0.001s] Sorting trace points... [3.716s] Computing alignments... [100.042s] Deallocating buffers... [0.35s] Loading trace points... [0.042s] Sorting trace points... [3.64s] Computing alignments... [97.881s] Deallocating buffers... [0.061s] Loading trace points... [0.05s] Sorting trace points... [3.857s] Computing alignments... [96.867s] Deallocating buffers... [0.219s] Loading trace points... [0.045s] Sorting trace points... [3.286s] Computing alignments... [99.241s] Deallocating buffers... [0.18s] Loading trace points... [0s] Sorting trace points... [3.013s] Computing alignments... [98.124s] Deallocating buffers... [0.323s] Loading trace points... [0s] [1636.23s] Deallocating reference... [0.061s] Loading reference sequences... [29.02s] Masking reference... [30.879s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.669s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.447s] Building query seed array... [3.137s] Computing hash join... [6.602s] Masking low complexity seeds... [0.464s] Searching alignments... [839.591s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.729s] Building query seed array... [4.195s] Computing hash join... [6.173s] Masking low complexity seeds... [0.33s] Searching alignments... [354.045s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.761s] Building query seed array... [4.109s] Computing hash join... [6.417s] Masking low complexity seeds... [0.294s] Searching alignments... [265.884s] Deallocating memory... [0.004s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.501s] Building query seed array... [3.21s] Computing hash join... [5.677s] Masking low complexity seeds... [0.309s] Searching alignments... [265.974s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.756s] Building query seed array... [3.047s] Computing hash join... [5.487s] Masking low complexity seeds... [0.302s] Searching alignments... [393.589s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.815s] Building query seed array... [3.644s] Computing hash join... [6.293s] Masking low complexity seeds... [0.347s] Searching alignments... [300.871s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.721s] Building query seed array... [3.666s] Computing hash join... [5.628s] Masking low complexity seeds... [0.323s] Searching alignments... [223.436s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.396s] Building query seed array... [3.048s] Computing hash join... [6.046s] Masking low complexity seeds... [0.346s] Searching alignments... [233.955s] Deallocating memory... [0s] Deallocating buffers... [1.657s] Clearing query masking... [2.068s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.678s] Sorting trace points... [3.597s] Computing alignments... [98.073s] Deallocating buffers... [0.132s] Loading trace points... [0.059s] Sorting trace points... [3.99s] Computing alignments... [101.131s] Deallocating buffers... [0.752s] Loading trace points... [0.085s] Sorting trace points... [3.053s] Computing alignments... [100.607s] Deallocating buffers... [0.073s] Loading trace points... [0.062s] Sorting trace points... [2.821s] Computing alignments... [105.071s] Deallocating buffers... [0.298s] Loading trace points... [0.067s] Sorting trace points... [3.333s] Computing alignments... [101.486s] Deallocating buffers... [0.426s] Loading trace points... [0.057s] Sorting trace points... [2.915s] Computing alignments... [99.914s] Deallocating buffers... [0.17s] Loading trace points... [0.047s] Sorting trace points... [3.035s] Computing alignments... [102.375s] Deallocating buffers... [0.415s] Loading trace points... [0.091s] Sorting trace points... [3.296s] Computing alignments... [102.885s] Deallocating buffers... [0.237s] Loading trace points... [0.069s] Sorting trace points... [3.998s] Computing alignments... [101.58s] Deallocating buffers... [0.561s] Loading trace points... [0.052s] Sorting trace points... [3.819s] Computing alignments... [102.813s] Deallocating buffers... [0.079s] Loading trace points... [0.102s] Sorting trace points... [3.328s] Computing alignments... [102.94s] Deallocating buffers... [0.42s] Loading trace points... [0.041s] Sorting trace points... [3.451s] Computing alignments... [104.598s] Deallocating buffers... [0.496s] Loading trace points... [0.052s] Sorting trace points... [4.092s] Computing alignments... [102.178s] Deallocating buffers... [0.586s] Loading trace points... [0.057s] Sorting trace points... [3.261s] Computing alignments... [101.366s] Deallocating buffers... [0.448s] Loading trace points... [0.066s] Sorting trace points... [3.967s] Computing alignments... [103.543s] Deallocating buffers... [0.65s] Loading trace points... [0s] Sorting trace points... [3.434s] Computing alignments... [102.584s] Deallocating buffers... [0.394s] Loading trace points... [0s] [1713.38s] Deallocating reference... [0.065s] Loading reference sequences... [250.578s] Masking reference... [30.885s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.36s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.663s] Building query seed array... [3.116s] Computing hash join... [6.983s] Masking low complexity seeds... [0.396s] Searching alignments... [832.875s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.852s] Building query seed array... [4.262s] Computing hash join... [6.096s] Masking low complexity seeds... [0.319s] Searching alignments... [348.597s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.681s] Building query seed array... [3.955s] Computing hash join... [5.847s] Masking low complexity seeds... [0.383s] Searching alignments... [266.321s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.317s] Building query seed array... [3.296s] Computing hash join... [6.047s] Masking low complexity seeds... [0.292s] Searching alignments... [262.307s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.212s] Building query seed array... [3.141s] Computing hash join... [5.569s] Masking low complexity seeds... [0.315s] Searching alignments... [389.363s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.015s] Building query seed array... [3.574s] Computing hash join... [5.582s] Masking low complexity seeds... [0.291s] Searching alignments... [298.163s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.806s] Building query seed array... [3.617s] Computing hash join... [5.7s] Masking low complexity seeds... [0.282s] Searching alignments... [221.83s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.316s] Building query seed array... [3.115s] Computing hash join... [5.614s] Masking low complexity seeds... [0.312s] Searching alignments... [232.103s] Deallocating memory... [0s] Deallocating buffers... [2.348s] Clearing query masking... [1.973s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [19.112s] Sorting trace points... [3.172s] Computing alignments... [102.607s] Deallocating buffers... [0.304s] Loading trace points... [0.114s] Sorting trace points... [3.845s] Computing alignments... [106.597s] Deallocating buffers... [0.206s] Loading trace points... [0.081s] Sorting trace points... [3.055s] Computing alignments... [106.263s] Deallocating buffers... [0.239s] Loading trace points... [1.037s] Sorting trace points... [3.814s] Computing alignments... [111.663s] Deallocating buffers... [0.429s] Loading trace points... [0.002s] Sorting trace points... [2.687s] Computing alignments... [106.75s] Deallocating buffers... [0.072s] Loading trace points... [0.069s] Sorting trace points... [3.108s] Computing alignments... [104.893s] Deallocating buffers... [0.232s] Loading trace points... [0.061s] Sorting trace points... [3.362s] Computing alignments... [108.308s] Deallocating buffers... [0.381s] Loading trace points... [0.058s] Sorting trace points... [2.997s] Computing alignments... [109.27s] Deallocating buffers... [0.372s] Loading trace points... [0.063s] Sorting trace points... [3.56s] Computing alignments... [107.763s] Deallocating buffers... [0.313s] Loading trace points... [0.05s] Sorting trace points... [2.594s] Computing alignments... [109.308s] Deallocating buffers... [0.152s] Loading trace points... [0.069s] Sorting trace points... [3.464s] Computing alignments... [109.692s] Deallocating buffers... [0.528s] Loading trace points... [0.073s] Sorting trace points... [3.04s] Computing alignments... [110.879s] Deallocating buffers... [0.299s] Loading trace points... [0.047s] Sorting trace points... [3.2s] Computing alignments... [109.287s] Deallocating buffers... [0.122s] Loading trace points... [0.057s] Sorting trace points... [3.575s] Computing alignments... [107.823s] Deallocating buffers... [0.365s] Loading trace points... [0.004s] Sorting trace points... [3.368s] Computing alignments... [110.664s] Deallocating buffers... [0.5s] Loading trace points... [0s] Sorting trace points... [2.621s] Computing alignments... [108.827s] Deallocating buffers... [0.084s] Loading trace points... [0s] [1807.75s] Deallocating reference... [0.066s] Loading reference sequences... [251.952s] Masking reference... [30.887s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.344s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.535s] Building query seed array... [3.218s] Computing hash join... [6.445s] Masking low complexity seeds... [0.331s] Searching alignments... [828.907s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.751s] Building query seed array... [4.055s] Computing hash join... [6.742s] Masking low complexity seeds... [0.3s] Searching alignments... [346.297s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.936s] Building query seed array... [4.096s] Computing hash join... [6.371s] Masking low complexity seeds... [0.388s] Searching alignments... [264.874s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.582s] Building query seed array... [3.288s] Computing hash join... [5.902s] Masking low complexity seeds... [0.314s] Searching alignments... [261.41s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.72s] Building query seed array... [3.091s] Computing hash join... [5.445s] Masking low complexity seeds... [0.309s] Searching alignments... [390.453s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.583s] Building query seed array... [3.581s] Computing hash join... [5.853s] Masking low complexity seeds... [0.326s] Searching alignments... [300.779s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.198s] Building query seed array... [3.659s] Computing hash join... [5.314s] Masking low complexity seeds... [0.295s] Searching alignments... [222.969s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.001s] Building query seed array... [3.207s] Computing hash join... [5.819s] Masking low complexity seeds... [0.302s] Searching alignments... [235.253s] Deallocating memory... [0s] Deallocating buffers... [2.096s] Clearing query masking... [2.036s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.537s] Sorting trace points... [3.492s] Computing alignments... [87.565s] Deallocating buffers... [0.166s] Loading trace points... [0.085s] Sorting trace points... [3.185s] Computing alignments... [89.681s] Deallocating buffers... [0.264s] Loading trace points... [0.054s] Sorting trace points... [3.12s] Computing alignments... [88.798s] Deallocating buffers... [0.215s] Loading trace points... [0.001s] Sorting trace points... [4.154s] Computing alignments... [95.323s] Deallocating buffers... [0.466s] Loading trace points... [0.082s] Sorting trace points... [4.024s] Computing alignments... [89.626s] Deallocating buffers... [0.608s] Loading trace points... [0.06s] Sorting trace points... [3.654s] Computing alignments... [89.714s] Deallocating buffers... [0.215s] Loading trace points... [0.066s] Sorting trace points... [3.018s] Computing alignments... [90.774s] Deallocating buffers... [0.396s] Loading trace points... [0.094s] Sorting trace points... [3.557s] Computing alignments... [94.683s] Deallocating buffers... [0.325s] Loading trace points... [0.087s] Sorting trace points... [3.789s] Computing alignments... [91.056s] Deallocating buffers... [0.464s] Loading trace points... [0.092s] Sorting trace points... [3.446s] Computing alignments... [91.941s] Deallocating buffers... [0.183s] Loading trace points... [0s] Sorting trace points... [2.875s] Computing alignments... [91.893s] Deallocating buffers... [0.343s] Loading trace points... [0.101s] Sorting trace points... [3.317s] Computing alignments... [94.683s] Deallocating buffers... [0.278s] Loading trace points... [0.078s] Sorting trace points... [4.014s] Computing alignments... [91.974s] Deallocating buffers... [0.623s] Loading trace points... [0.073s] Sorting trace points... [4.045s] Computing alignments... [91.425s] Deallocating buffers... [0.549s] Loading trace points... [0.073s] Sorting trace points... [3.856s] Computing alignments... [92.401s] Deallocating buffers... [0.541s] Loading trace points... [0s] Sorting trace points... [2.944s] Computing alignments... [92.419s] Deallocating buffers... [0.23s] Loading trace points... [0s] [1544.95s] Deallocating reference... [0.068s] Loading reference sequences... [29.672s] Masking reference... [31.625s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.581s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.372s] Building query seed array... [3.072s] Computing hash join... [6.535s] Masking low complexity seeds... [0.479s] Searching alignments... [841.001s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.467s] Building query seed array... [4.08s] Computing hash join... [6.453s] Masking low complexity seeds... [0.3s] Searching alignments... [345.963s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.596s] Building query seed array... [3.868s] Computing hash join... [6.44s] Masking low complexity seeds... [0.313s] Searching alignments... [262.697s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.274s] Building query seed array... [3.375s] Computing hash join... [6.355s] Masking low complexity seeds... [0.308s] Searching alignments... [263.506s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.479s] Building query seed array... [3s] Computing hash join... [5.946s] Masking low complexity seeds... [0.276s] Searching alignments... [392.486s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.596s] Building query seed array... [3.446s] Computing hash join... [6.85s] Masking low complexity seeds... [0.28s] Searching alignments... [299.921s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.746s] Building query seed array... [3.686s] Computing hash join... [6.731s] Masking low complexity seeds... [0.344s] Searching alignments... [220.143s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.618s] Building query seed array... [3.026s] Computing hash join... [6.243s] Masking low complexity seeds... [0.291s] Searching alignments... [232.287s] Deallocating memory... [0s] Deallocating buffers... [1.094s] Clearing query masking... [2.068s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.314s] Sorting trace points... [3.491s] Computing alignments... [87.684s] Deallocating buffers... [0.039s] Loading trace points... [0.052s] Sorting trace points... [3.006s] Computing alignments... [90.482s] Deallocating buffers... [0.342s] Loading trace points... [0.065s] Sorting trace points... [3.793s] Computing alignments... [89.854s] Deallocating buffers... [0.234s] Loading trace points... [0.004s] Sorting trace points... [3.58s] Computing alignments... [95.439s] Deallocating buffers... [0.54s] Loading trace points... [0.07s] Sorting trace points... [3.25s] Computing alignments... [89.678s] Deallocating buffers... [0.202s] Loading trace points... [0.061s] Sorting trace points... [2.662s] Computing alignments... [90.383s] Deallocating buffers... [0.194s] Loading trace points... [0.095s] Sorting trace points... [3.122s] Computing alignments... [90.886s] Deallocating buffers... [0.288s] Loading trace points... [0.075s] Sorting trace points... [2.829s] Computing alignments... [94.44s] Deallocating buffers... [0.049s] Loading trace points... [0.096s] Sorting trace points... [4.003s] Computing alignments... [90.906s] Deallocating buffers... [0.682s] Loading trace points... [0.071s] Sorting trace points... [3.247s] Computing alignments... [91.885s] Deallocating buffers... [0.062s] Loading trace points... [0.001s] Sorting trace points... [3.847s] Computing alignments... [91.583s] Deallocating buffers... [0.435s] Loading trace points... [0.062s] Sorting trace points... [3.653s] Computing alignments... [94.884s] Deallocating buffers... [0.124s] Loading trace points... [0.064s] Sorting trace points... [3.493s] Computing alignments... [92.156s] Deallocating buffers... [0.631s] Loading trace points... [0.986s] Sorting trace points... [3.162s] Computing alignments... [91.092s] Deallocating buffers... [0.064s] Loading trace points... [0.074s] Sorting trace points... [3.7s] Computing alignments... [92.545s] Deallocating buffers... [0.549s] Loading trace points... [0s] Sorting trace points... [3.645s] Computing alignments... [92.588s] Deallocating buffers... [0.194s] Loading trace points... [0s] [1544.84s] Deallocating reference... [0.075s] Loading reference sequences... [30.775s] Masking reference... [31.111s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.703s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.29s] Building query seed array... [3.144s] Computing hash join... [6.253s] Masking low complexity seeds... [0.539s] Searching alignments... [837.644s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.367s] Building query seed array... [3.922s] Computing hash join... [6.471s] Masking low complexity seeds... [0.336s] Searching alignments... [348.057s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.576s] Building query seed array... [4.204s] Computing hash join... [6.435s] Masking low complexity seeds... [0.297s] Searching alignments... [264.055s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.439s] Building query seed array... [3.455s] Computing hash join... [6.519s] Masking low complexity seeds... [0.336s] Searching alignments... [260.443s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.316s] Building query seed array... [2.936s] Computing hash join... [6.257s] Masking low complexity seeds... [0.277s] Searching alignments... [392.803s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.614s] Building query seed array... [3.538s] Computing hash join... [6.664s] Masking low complexity seeds... [0.335s] Searching alignments... [297.931s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.126s] Building query seed array... [3.736s] Computing hash join... [6.487s] Masking low complexity seeds... [0.292s] Searching alignments... [222.77s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.22s] Building query seed array... [3.143s] Computing hash join... [6.386s] Masking low complexity seeds... [0.273s] Searching alignments... [231.826s] Deallocating memory... [0s] Deallocating buffers... [1.023s] Clearing query masking... [2.143s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.175s] Sorting trace points... [3.459s] Computing alignments... [84.754s] Deallocating buffers... [0.039s] Loading trace points... [0.037s] Sorting trace points... [3.708s] Computing alignments... [87.187s] Deallocating buffers... [0.272s] Loading trace points... [0.042s] Sorting trace points... [4.109s] Computing alignments... [87.011s] Deallocating buffers... [0.782s] Loading trace points... [0.083s] Sorting trace points... [3.883s] Computing alignments... [91.859s] Deallocating buffers... [0.152s] Loading trace points... [0.053s] Sorting trace points... [4.328s] Computing alignments... [86.62s] Deallocating buffers... [0.788s] Loading trace points... [0.044s] Sorting trace points... [3.528s] Computing alignments... [86.986s] Deallocating buffers... [0.183s] Loading trace points... [0.064s] Sorting trace points... [3.828s] Computing alignments... [88.387s] Deallocating buffers... [0.745s] Loading trace points... [0.119s] Sorting trace points... [4.533s] Computing alignments... [91.211s] Deallocating buffers... [0.362s] Loading trace points... [0.075s] Sorting trace points... [4.183s] Computing alignments... [87.976s] Deallocating buffers... [0.773s] Loading trace points... [0.082s] Sorting trace points... [2.608s] Computing alignments... [88.339s] Deallocating buffers... [0.065s] Loading trace points... [0.09s] Sorting trace points... [4.18s] Computing alignments... [88.344s] Deallocating buffers... [0.547s] Loading trace points... [0s] Sorting trace points... [3.556s] Computing alignments... [91.187s] Deallocating buffers... [0.26s] Loading trace points... [0.039s] Sorting trace points... [3.854s] Computing alignments... [87.924s] Deallocating buffers... [0.693s] Loading trace points... [0.082s] Sorting trace points... [3.456s] Computing alignments... [87.493s] Deallocating buffers... [0.17s] Loading trace points... [0.048s] Sorting trace points... [3.961s] Computing alignments... [89.13s] Deallocating buffers... [0.701s] Loading trace points... [0s] Sorting trace points... [3.861s] Computing alignments... [89.08s] Deallocating buffers... [0.459s] Loading trace points... [0s] [1499.69s] Deallocating reference... [0.077s] Loading reference sequences... [31.524s] Masking reference... [30.887s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.318s] Building reference histograms... [32.194s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.496s] Building query seed array... [3.211s] Computing hash join... [6.148s] Masking low complexity seeds... [0.31s] Searching alignments... [847.767s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.202s] Building query seed array... [4.285s] Computing hash join... [6.029s] Masking low complexity seeds... [0.345s] Searching alignments... [352.266s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.797s] Building query seed array... [3.877s] Computing hash join... [5.853s] Masking low complexity seeds... [0.367s] Searching alignments... [267.872s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.345s] Building query seed array... [3.251s] Computing hash join... [5.826s] Masking low complexity seeds... [0.311s] Searching alignments... [266.097s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.274s] Building query seed array... [2.834s] Computing hash join... [5.595s] Masking low complexity seeds... [0.298s] Searching alignments... [392.93s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.659s] Building query seed array... [3.578s] Computing hash join... [5.632s] Masking low complexity seeds... [0.321s] Searching alignments... [301.76s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.139s] Building query seed array... [3.702s] Computing hash join... [5.949s] Masking low complexity seeds... [0.288s] Searching alignments... [223.243s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.189s] Building query seed array... [3.081s] Computing hash join... [5.771s] Masking low complexity seeds... [0.289s] Searching alignments... [235.181s] Deallocating memory... [0s] Deallocating buffers... [1.768s] Clearing query masking... [2.018s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.008s] Sorting trace points... [3.588s] Computing alignments... [100.21s] Deallocating buffers... [0.515s] Loading trace points... [0.061s] Sorting trace points... [3.808s] Computing alignments... [103.119s] Deallocating buffers... [0.359s] Loading trace points... [0.078s] Sorting trace points... [4.059s] Computing alignments... [103.897s] Deallocating buffers... [0.904s] Loading trace points... [0.054s] Sorting trace points... [2.941s] Computing alignments... [107.956s] Deallocating buffers... [0.109s] Loading trace points... [0.077s] Sorting trace points... [3.321s] Computing alignments... [103.824s] Deallocating buffers... [0.409s] Loading trace points... [0.065s] Sorting trace points... [2.848s] Computing alignments... [101.247s] Deallocating buffers... [0.105s] Loading trace points... [0.074s] Sorting trace points... [3.729s] Computing alignments... [104.583s] Deallocating buffers... [0.365s] Loading trace points... [0.08s] Sorting trace points... [3.469s] Computing alignments... [105.809s] Deallocating buffers... [0.438s] Loading trace points... [0.126s] Sorting trace points... [2.931s] Computing alignments... [105.669s] Deallocating buffers... [0.18s] Loading trace points... [0.084s] Sorting trace points... [3.749s] Computing alignments... [104.404s] Deallocating buffers... [0.489s] Loading trace points... [0.038s] Sorting trace points... [3.287s] Computing alignments... [106.173s] Deallocating buffers... [0.292s] Loading trace points... [0.053s] Sorting trace points... [3.219s] Computing alignments... [107.866s] Deallocating buffers... [0.277s] Loading trace points... [0.072s] Sorting trace points... [3.495s] Computing alignments... [105.586s] Deallocating buffers... [0.38s] Loading trace points... [0.089s] Sorting trace points... [2.982s] Computing alignments... [103.499s] Deallocating buffers... [0.16s] Loading trace points... [0.079s] Sorting trace points... [3.472s] Computing alignments... [106.771s] Deallocating buffers... [0.381s] Loading trace points... [0s] Sorting trace points... [3.758s] Computing alignments... [105.268s] Deallocating buffers... [0.536s] Loading trace points... [0s] [1755.64s] Deallocating reference... [0.077s] Loading reference sequences... [30.146s] Masking reference... [31.222s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.523s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.291s] Building query seed array... [3.223s] Computing hash join... [6.158s] Masking low complexity seeds... [0.298s] Searching alignments... [840.428s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.092s] Building query seed array... [4.426s] Computing hash join... [6.195s] Masking low complexity seeds... [0.3s] Searching alignments... [350.101s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.625s] Building query seed array... [3.893s] Computing hash join... [6.413s] Masking low complexity seeds... [0.299s] Searching alignments... [266.466s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.171s] Building query seed array... [3.344s] Computing hash join... [5.957s] Masking low complexity seeds... [0.322s] Searching alignments... [265.027s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.379s] Building query seed array... [3.077s] Computing hash join... [5.434s] Masking low complexity seeds... [0.306s] Searching alignments... [388.898s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.313s] Building query seed array... [3.639s] Computing hash join... [5.617s] Masking low complexity seeds... [0.274s] Searching alignments... [300.974s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.537s] Building query seed array... [3.68s] Computing hash join... [5.944s] Masking low complexity seeds... [0.29s] Searching alignments... [222.211s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.389s] Building query seed array... [3.142s] Computing hash join... [5.714s] Masking low complexity seeds... [0.287s] Searching alignments... [231.656s] Deallocating memory... [0s] Deallocating buffers... [1.634s] Clearing query masking... [2.035s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.852s] Sorting trace points... [3.549s] Computing alignments... [83.171s] Deallocating buffers... [0.354s] Loading trace points... [0.068s] Sorting trace points... [3.954s] Computing alignments... [85.199s] Deallocating buffers... [0.69s] Loading trace points... [0.058s] Sorting trace points... [3.952s] Computing alignments... [84.783s] Deallocating buffers... [0.407s] Loading trace points... [0.002s] Sorting trace points... [3.02s] Computing alignments... [89.577s] Deallocating buffers... [0.052s] Loading trace points... [0.067s] Sorting trace points... [3.933s] Computing alignments... [84.054s] Deallocating buffers... [0.357s] Loading trace points... [0.056s] Sorting trace points... [3.223s] Computing alignments... [84.193s] Deallocating buffers... [0.32s] Loading trace points... [0.065s] Sorting trace points... [3.884s] Computing alignments... [85.869s] Deallocating buffers... [0.377s] Loading trace points... [0.075s] Sorting trace points... [3.439s] Computing alignments... [88.708s] Deallocating buffers... [0.253s] Loading trace points... [0.069s] Sorting trace points... [4.034s] Computing alignments... [85.21s] Deallocating buffers... [0.617s] Loading trace points... [0.084s] Sorting trace points... [4.024s] Computing alignments... [85.848s] Deallocating buffers... [0.631s] Loading trace points... [0s] Sorting trace points... [3.088s] Computing alignments... [86.466s] Deallocating buffers... [0.043s] Loading trace points... [0.055s] Sorting trace points... [3.889s] Computing alignments... [89.169s] Deallocating buffers... [0.602s] Loading trace points... [0.081s] Sorting trace points... [2.637s] Computing alignments... [85.998s] Deallocating buffers... [0.09s] Loading trace points... [0.087s] Sorting trace points... [3.617s] Computing alignments... [85.783s] Deallocating buffers... [0.283s] Loading trace points... [0.088s] Sorting trace points... [4.121s] Computing alignments... [87.053s] Deallocating buffers... [0.538s] Loading trace points... [0s] Sorting trace points... [3.211s] Computing alignments... [86.682s] Deallocating buffers... [0.273s] Loading trace points... [0s] [1460.11s] Deallocating reference... [0.06s] Loading reference sequences... [29.452s] Masking reference... [30.914s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.823s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.372s] Building query seed array... [3.142s] Computing hash join... [6.48s] Masking low complexity seeds... [0.296s] Searching alignments... [831.544s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.956s] Building query seed array... [4.265s] Computing hash join... [6.577s] Masking low complexity seeds... [0.319s] Searching alignments... [355.878s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.014s] Building query seed array... [3.941s] Computing hash join... [5.73s] Masking low complexity seeds... [0.287s] Searching alignments... [268.523s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.535s] Building query seed array... [3.183s] Computing hash join... [5.726s] Masking low complexity seeds... [0.318s] Searching alignments... [267.106s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.021s] Building query seed array... [3.166s] Computing hash join... [6.542s] Masking low complexity seeds... [0.314s] Searching alignments... [393.69s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.89s] Building query seed array... [3.443s] Computing hash join... [5.552s] Masking low complexity seeds... [0.295s] Searching alignments... [302.774s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.85s] Building query seed array... [3.787s] Computing hash join... [6.445s] Masking low complexity seeds... [0.322s] Searching alignments... [221.745s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.686s] Building query seed array... [3.133s] Computing hash join... [6.255s] Masking low complexity seeds... [0.367s] Searching alignments... [239.252s] Deallocating memory... [0s] Deallocating buffers... [2.067s] Clearing query masking... [2.092s] Opening temporary output file... [0.909s] Computing alignments... Loading trace points... [18.21s] Sorting trace points... [3.833s] Computing alignments... [101.959s] Deallocating buffers... [0.53s] Loading trace points... [0.089s] Sorting trace points... [4.421s] Computing alignments... [105.103s] Deallocating buffers... [0.983s] Loading trace points... [0.073s] Sorting trace points... [3.534s] Computing alignments... [105.395s] Deallocating buffers... [0.372s] Loading trace points... [0.051s] Sorting trace points... [3.682s] Computing alignments... [111.531s] Deallocating buffers... [0.331s] Loading trace points... [0.081s] Sorting trace points... [3.961s] Computing alignments... [105.241s] Deallocating buffers... [0.429s] Loading trace points... [0.083s] Sorting trace points... [3.258s] Computing alignments... [103.949s] Deallocating buffers... [0.501s] Loading trace points... [0.002s] Sorting trace points... [2.798s] Computing alignments... [106.417s] Deallocating buffers... [0.07s] Loading trace points... [0.075s] Sorting trace points... [4.025s] Computing alignments... [109.157s] Deallocating buffers... [0.816s] Loading trace points... [0.059s] Sorting trace points... [3.468s] Computing alignments... [106.624s] Deallocating buffers... [0.197s] Loading trace points... [0.033s] Sorting trace points... [4.215s] Computing alignments... [108.056s] Deallocating buffers... [0.718s] Loading trace points... [0.06s] Sorting trace points... [3.959s] Computing alignments... [108.345s] Deallocating buffers... [0.361s] Loading trace points... [0.055s] Sorting trace points... [3.872s] Computing alignments... [110.249s] Deallocating buffers... [0.527s] Loading trace points... [0.069s] Sorting trace points... [3.379s] Computing alignments... [108.739s] Deallocating buffers... [0.503s] Loading trace points... [0.048s] Sorting trace points... [3.993s] Computing alignments... [106.279s] Deallocating buffers... [0.476s] Loading trace points... [0.101s] Sorting trace points... [4.221s] Computing alignments... [108.796s] Deallocating buffers... [0.508s] Loading trace points... [0s] Sorting trace points... [3.031s] Computing alignments... [108.267s] Deallocating buffers... [0.357s] Loading trace points... [0s] [1800.66s] Deallocating reference... [0.072s] Loading reference sequences... [249.083s] Masking reference... [31.018s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.051s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.304s] Building query seed array... [3.086s] Computing hash join... [7.105s] Masking low complexity seeds... [0.446s] Searching alignments... [837.922s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.13s] Building query seed array... [3.938s] Computing hash join... [6.338s] Masking low complexity seeds... [0.308s] Searching alignments... [353.542s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.535s] Building query seed array... [4.006s] Computing hash join... [5.863s] Masking low complexity seeds... [0.333s] Searching alignments... [265.625s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.962s] Building query seed array... [3.191s] Computing hash join... [5.769s] Masking low complexity seeds... [0.306s] Searching alignments... [267.993s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.207s] Building query seed array... [3.097s] Computing hash join... [5.858s] Masking low complexity seeds... [0.28s] Searching alignments... [388.546s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.189s] Building query seed array... [3.511s] Computing hash join... [5.484s] Masking low complexity seeds... [0.283s] Searching alignments... [300.594s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.042s] Building query seed array... [3.673s] Computing hash join... [5.999s] Masking low complexity seeds... [0.292s] Searching alignments... [224.881s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.252s] Building query seed array... [3.137s] Computing hash join... [5.905s] Masking low complexity seeds... [0.294s] Searching alignments... [234.872s] Deallocating memory... [0s] Deallocating buffers... [2.098s] Clearing query masking... [2.042s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [19.829s] Sorting trace points... [3.926s] Computing alignments... [100.77s] Deallocating buffers... [0.388s] Loading trace points... [0.069s] Sorting trace points... [3.414s] Computing alignments... [104.254s] Deallocating buffers... [0.346s] Loading trace points... [0.738s] Sorting trace points... [3.446s] Computing alignments... [104.07s] Deallocating buffers... [0.378s] Loading trace points... [0.064s] Sorting trace points... [3.265s] Computing alignments... [109.465s] Deallocating buffers... [0.267s] Loading trace points... [0.084s] Sorting trace points... [3.108s] Computing alignments... [104.993s] Deallocating buffers... [0.35s] Loading trace points... [0.059s] Sorting trace points... [3.134s] Computing alignments... [103.546s] Deallocating buffers... [0.412s] Loading trace points... [0.057s] Sorting trace points... [2.786s] Computing alignments... [106.042s] Deallocating buffers... [0.11s] Loading trace points... [0.064s] Sorting trace points... [3.04s] Computing alignments... [107.524s] Deallocating buffers... [0.429s] Loading trace points... [0.063s] Sorting trace points... [3.192s] Computing alignments... [105.297s] Deallocating buffers... [0.348s] Loading trace points... [0.059s] Sorting trace points... [3.122s] Computing alignments... [105.984s] Deallocating buffers... [0.288s] Loading trace points... [0s] Sorting trace points... [3.06s] Computing alignments... [106.743s] Deallocating buffers... [0.275s] Loading trace points... [0.06s] Sorting trace points... [3.224s] Computing alignments... [108.943s] Deallocating buffers... [0.446s] Loading trace points... [0.056s] Sorting trace points... [4.374s] Computing alignments... [108.06s] Deallocating buffers... [0.704s] Loading trace points... [0.066s] Sorting trace points... [2.745s] Computing alignments... [106.273s] Deallocating buffers... [0.095s] Loading trace points... [0.276s] Sorting trace points... [3.693s] Computing alignments... [109.082s] Deallocating buffers... [0.449s] Loading trace points... [0s] Sorting trace points... [3.018s] Computing alignments... [106.472s] Deallocating buffers... [0.269s] Loading trace points... [0s] [1777.28s] Deallocating reference... [0.067s] Loading reference sequences... [29.057s] Masking reference... [31.693s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.385s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.48s] Building query seed array... [3.218s] Computing hash join... [6.673s] Masking low complexity seeds... [0.457s] Searching alignments... [838.303s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.839s] Building query seed array... [4.199s] Computing hash join... [6.201s] Masking low complexity seeds... [0.315s] Searching alignments... [347.709s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.692s] Building query seed array... [3.926s] Computing hash join... [6.487s] Masking low complexity seeds... [0.322s] Searching alignments... [266.211s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.356s] Building query seed array... [3.407s] Computing hash join... [6.581s] Masking low complexity seeds... [0.378s] Searching alignments... [264.741s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.538s] Building query seed array... [2.96s] Computing hash join... [6.096s] Masking low complexity seeds... [0.292s] Searching alignments... [398.226s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.468s] Building query seed array... [3.429s] Computing hash join... [6.183s] Masking low complexity seeds... [0.333s] Searching alignments... [298.426s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.701s] Building query seed array... [3.704s] Computing hash join... [6.387s] Masking low complexity seeds... [0.288s] Searching alignments... [224.68s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.132s] Building query seed array... [3.065s] Computing hash join... [5.965s] Masking low complexity seeds... [0.277s] Searching alignments... [235.25s] Deallocating memory... [0s] Deallocating buffers... [1.446s] Clearing query masking... [2.043s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.998s] Sorting trace points... [3.439s] Computing alignments... [97.971s] Deallocating buffers... [0.294s] Loading trace points... [0.064s] Sorting trace points... [3.9s] Computing alignments... [101.183s] Deallocating buffers... [0.407s] Loading trace points... [0.063s] Sorting trace points... [3.45s] Computing alignments... [101.305s] Deallocating buffers... [0.51s] Loading trace points... [0.073s] Sorting trace points... [4.247s] Computing alignments... [106.231s] Deallocating buffers... [0.469s] Loading trace points... [0.071s] Sorting trace points... [3.443s] Computing alignments... [101.83s] Deallocating buffers... [0.481s] Loading trace points... [0.085s] Sorting trace points... [3.723s] Computing alignments... [100.112s] Deallocating buffers... [0.38s] Loading trace points... [0.067s] Sorting trace points... [3.076s] Computing alignments... [103.025s] Deallocating buffers... [0.222s] Loading trace points... [0.076s] Sorting trace points... [4.227s] Computing alignments... [104.311s] Deallocating buffers... [0.492s] Loading trace points... [0.088s] Sorting trace points... [2.602s] Computing alignments... [102.633s] Deallocating buffers... [0.229s] Loading trace points... [0.087s] Sorting trace points... [3.148s] Computing alignments... [103.586s] Deallocating buffers... [0.202s] Loading trace points... [0.054s] Sorting trace points... [3.273s] Computing alignments... [103.889s] Deallocating buffers... [0.327s] Loading trace points... [0.052s] Sorting trace points... [4.339s] Computing alignments... [105.738s] Deallocating buffers... [0.609s] Loading trace points... [0.077s] Sorting trace points... [3.886s] Computing alignments... [103.958s] Deallocating buffers... [0.562s] Loading trace points... [0.091s] Sorting trace points... [3.974s] Computing alignments... [102.726s] Deallocating buffers... [0.596s] Loading trace points... [0.089s] Sorting trace points... [2.829s] Computing alignments... [105.132s] Deallocating buffers... [0.145s] Loading trace points... [0s] Sorting trace points... [2.898s] Computing alignments... [103.37s] Deallocating buffers... [0.369s] Loading trace points... [0s] [1728.93s] Deallocating reference... [0.063s] Loading reference sequences... [25.009s] Masking reference... [25.369s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.366s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.174s] Building query seed array... [3.188s] Computing hash join... [4.9s] Masking low complexity seeds... [0.275s] Searching alignments... [670.741s] Deallocating memory... [0.004s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.083s] Building query seed array... [4.149s] Computing hash join... [5.019s] Masking low complexity seeds... [0.335s] Searching alignments... [279.957s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.047s] Building query seed array... [3.771s] Computing hash join... [4.92s] Masking low complexity seeds... [0.331s] Searching alignments... [213.11s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.169s] Building query seed array... [3.424s] Computing hash join... [5.071s] Masking low complexity seeds... [0.326s] Searching alignments... [212.186s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.31s] Building query seed array... [2.852s] Computing hash join... [4.331s] Masking low complexity seeds... [0.257s] Searching alignments... [320.262s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.923s] Building query seed array... [3.58s] Computing hash join... [4.515s] Masking low complexity seeds... [0.265s] Searching alignments... [238.59s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.812s] Building query seed array... [3.688s] Computing hash join... [5.102s] Masking low complexity seeds... [0.29s] Searching alignments... [180.773s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.349s] Building query seed array... [2.973s] Computing hash join... [4.829s] Masking low complexity seeds... [0.32s] Searching alignments... [187.014s] Deallocating memory... [0s] Deallocating buffers... [0.925s] Clearing query masking... [2.029s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [14.628s] Sorting trace points... [2.141s] Computing alignments... [75.233s] Deallocating buffers... [0.041s] Loading trace points... [0.054s] Sorting trace points... [2.808s] Computing alignments... [77.845s] Deallocating buffers... [0.221s] Loading trace points... [0.092s] Sorting trace points... [2.471s] Computing alignments... [77.273s] Deallocating buffers... [0.065s] Loading trace points... [0.049s] Sorting trace points... [2.579s] Computing alignments... [81.035s] Deallocating buffers... [0.068s] Loading trace points... [0.053s] Sorting trace points... [2.706s] Computing alignments... [78.25s] Deallocating buffers... [0.521s] Loading trace points... [0.046s] Sorting trace points... [2.066s] Computing alignments... [76.479s] Deallocating buffers... [0.053s] Loading trace points... [0.055s] Sorting trace points... [3.264s] Computing alignments... [78.574s] Deallocating buffers... [0.494s] Loading trace points... [0.071s] Sorting trace points... [3.102s] Computing alignments... [80.55s] Deallocating buffers... [0.067s] Loading trace points... [0.09s] Sorting trace points... [2.322s] Computing alignments... [78.083s] Deallocating buffers... [0.138s] Loading trace points... [0.053s] Sorting trace points... [2.089s] Computing alignments... [79.381s] Deallocating buffers... [0.036s] Loading trace points... [0.069s] Sorting trace points... [3.246s] Computing alignments... [78.203s] Deallocating buffers... [0.36s] Loading trace points... [0.087s] Sorting trace points... [3.135s] Computing alignments... [80.681s] Deallocating buffers... [0.317s] Loading trace points... [0.001s] Sorting trace points... [2.348s] Computing alignments... [79.253s] Deallocating buffers... [0.197s] Loading trace points... [0.093s] Sorting trace points... [3.03s] Computing alignments... [78.399s] Deallocating buffers... [0.263s] Loading trace points... [0.076s] Sorting trace points... [2.682s] Computing alignments... [79.672s] Deallocating buffers... [0.16s] Loading trace points... [0s] Sorting trace points... [3.122s] Computing alignments... [79.207s] Deallocating buffers... [0.364s] Loading trace points... [0s] [1320.22s] Deallocating reference... [0.068s] Loading reference sequences... [0.072s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [5543.19s] [5543.19s] Deallocating queries... [0.091s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.296s] [4.437s] Closing the database... [0s] Cleaning up... [0s] Total time = 72577.5s Reported 5652092526 pairwise alignments, 5652092526 HSPs. 7672210 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-14.trimmed.R1.fastq.gz complete: CH01-14.trimmed.R1.blastx.meganized.daa Now MEGANizing CH01-14.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH01-14.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (425.6s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9,537.8s) Total reads: 7,672,210 With hits: 7,672,210 Alignments: 4,486,614,438 Assig. Taxonomy: 4,620,966 Assig. SEED: 183,831 Assig. EGGNOG: 42,958 Assig. GTDB: 341,718 Assig. EC: 700,167 Assig. INTERPRO2GO: 2,024,181 MinSupport set to: 3836 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 7,042 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (31.7s) Min-supp. changes: 5,370 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12.4s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 169 Class. SEED: 502 Class. EGGNOG: 1,672 Class. GTDB: 49 Class. EC: 2,444 Class. INTERPRO2GO: 8,981 Total time: 10,017s Peak memory: 37.4 of 195.3G MEGANization of CH01-14.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-14.trimmed.R2.fastq.gz... e4a62f42fc61b211e4609857a6728ea2 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-14.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-14.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.337s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.755s] Opening the output file... [0s] Loading query sequences... [132.342s] Masking queries... [36.212s] Algorithm: Double-indexed Building query histograms... [27.589s] Loading reference sequences... [30.85s] Masking reference... [32.027s] Initializing dictionary... [0.222s] Initializing temporary storage... [0.009s] Building reference histograms... [32.721s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.132s] Building query seed array... [3.126s] Computing hash join... [6.503s] Masking low complexity seeds... [0.568s] Searching alignments... [861.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.622s] Building query seed array... [4.267s] Computing hash join... [5.908s] Masking low complexity seeds... [0.303s] Searching alignments... [359.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.444s] Building query seed array... [3.949s] Computing hash join... [6.072s] Masking low complexity seeds... [0.324s] Searching alignments... [270.821s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.367s] Building query seed array... [3.281s] Computing hash join... [5.344s] Masking low complexity seeds... [0.301s] Searching alignments... [268.94s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.474s] Building query seed array... [2.992s] Computing hash join... [5.721s] Masking low complexity seeds... [0.297s] Searching alignments... [407.781s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.791s] Building query seed array... [3.59s] Computing hash join... [5.424s] Masking low complexity seeds... [0.316s] Searching alignments... [312.467s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.941s] Building query seed array... [3.792s] Computing hash join... [5.766s] Masking low complexity seeds... [0.306s] Searching alignments... [232.344s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.201s] Building query seed array... [3.208s] Computing hash join... [5.543s] Masking low complexity seeds... [0.278s] Searching alignments... [247.193s] Deallocating memory... [0s] Deallocating buffers... [1.32s] Clearing query masking... [2.016s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.417s] Sorting trace points... [3.82s] Computing alignments... [91.882s] Deallocating buffers... [0.26s] Loading trace points... [0.058s] Sorting trace points... [4.43s] Computing alignments... [93.134s] Deallocating buffers... [0.836s] Loading trace points... [0.063s] Sorting trace points... [3.565s] Computing alignments... [92.792s] Deallocating buffers... [0.07s] Loading trace points... [0.089s] Sorting trace points... [4.364s] Computing alignments... [95.129s] Deallocating buffers... [0.695s] Loading trace points... [0.067s] Sorting trace points... [3.08s] Computing alignments... [92.435s] Deallocating buffers... [0.044s] Loading trace points... [0.078s] Sorting trace points... [3.28s] Computing alignments... [92.884s] Deallocating buffers... [0.235s] Loading trace points... [0.096s] Sorting trace points... [4.104s] Computing alignments... [92.882s] Deallocating buffers... [0.637s] Loading trace points... [0.097s] Sorting trace points... [3.934s] Computing alignments... [93.948s] Deallocating buffers... [0.34s] Loading trace points... [0.078s] Sorting trace points... [4.105s] Computing alignments... [92.15s] Deallocating buffers... [0.643s] Loading trace points... [0.067s] Sorting trace points... [3.918s] Computing alignments... [92.81s] Deallocating buffers... [0.348s] Loading trace points... [0.064s] Sorting trace points... [4.157s] Computing alignments... [93.43s] Deallocating buffers... [0.646s] Loading trace points... [0.091s] Sorting trace points... [3.855s] Computing alignments... [95.196s] Deallocating buffers... [0.373s] Loading trace points... [0.128s] Sorting trace points... [3.621s] Computing alignments... [93.299s] Deallocating buffers... [0.422s] Loading trace points... [0.092s] Sorting trace points... [4.059s] Computing alignments... [93.057s] Deallocating buffers... [0.381s] Loading trace points... [0.061s] Sorting trace points... [2.649s] Computing alignments... [92.271s] Deallocating buffers... [0.211s] Loading trace points... [0s] Sorting trace points... [3.84s] Computing alignments... [90.418s] Deallocating buffers... [0.466s] Loading trace points... [0s] [1574.77s] Deallocating reference... [0.064s] Loading reference sequences... [36.775s] Masking reference... [30.946s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.666s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.565s] Building query seed array... [3.165s] Computing hash join... [6.111s] Masking low complexity seeds... [0.295s] Searching alignments... [849.939s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.07s] Building query seed array... [4.058s] Computing hash join... [5.993s] Masking low complexity seeds... [0.306s] Searching alignments... [351.415s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.403s] Building query seed array... [3.866s] Computing hash join... [5.698s] Masking low complexity seeds... [0.312s] Searching alignments... [265.939s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.454s] Building query seed array... [3.402s] Computing hash join... [5.93s] Masking low complexity seeds... [0.315s] Searching alignments... [264.162s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.478s] Building query seed array... [2.986s] Computing hash join... [5.676s] Masking low complexity seeds... [0.287s] Searching alignments... [407.125s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.861s] Building query seed array... [3.368s] Computing hash join... [5.808s] Masking low complexity seeds... [0.281s] Searching alignments... [306.455s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.642s] Building query seed array... [3.677s] Computing hash join... [5.79s] Masking low complexity seeds... [0.298s] Searching alignments... [227.693s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.705s] Building query seed array... [3.128s] Computing hash join... [6.027s] Masking low complexity seeds... [0.307s] Searching alignments... [240.382s] Deallocating memory... [0s] Deallocating buffers... [1.483s] Clearing query masking... [2.059s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.316s] Sorting trace points... [3.477s] Computing alignments... [99.073s] Deallocating buffers... [0.243s] Loading trace points... [0.059s] Sorting trace points... [3.264s] Computing alignments... [99.707s] Deallocating buffers... [0.069s] Loading trace points... [0.067s] Sorting trace points... [3.424s] Computing alignments... [99.273s] Deallocating buffers... [0.2s] Loading trace points... [0.002s] Sorting trace points... [4.369s] Computing alignments... [101.793s] Deallocating buffers... [0.832s] Loading trace points... [0.084s] Sorting trace points... [3.37s] Computing alignments... [98.479s] Deallocating buffers... [0.074s] Loading trace points... [0.047s] Sorting trace points... [3.453s] Computing alignments... [101.238s] Deallocating buffers... [0.35s] Loading trace points... [0.122s] Sorting trace points... [3.417s] Computing alignments... [100.081s] Deallocating buffers... [0.081s] Loading trace points... [0.001s] Sorting trace points... [3.706s] Computing alignments... [101.607s] Deallocating buffers... [0.31s] Loading trace points... [0.001s] Sorting trace points... [3.954s] Computing alignments... [99.399s] Deallocating buffers... [0.241s] Loading trace points... [0.055s] Sorting trace points... [2.647s] Computing alignments... [99.743s] Deallocating buffers... [0.076s] Loading trace points... [0.064s] Sorting trace points... [3.199s] Computing alignments... [101.464s] Deallocating buffers... [0.579s] Loading trace points... [0.064s] Sorting trace points... [4.249s] Computing alignments... [101.073s] Deallocating buffers... [0.45s] Loading trace points... [0.064s] Sorting trace points... [3.5s] Computing alignments... [99.774s] Deallocating buffers... [0.284s] Loading trace points... [0.055s] Sorting trace points... [3.879s] Computing alignments... [100.192s] Deallocating buffers... [0.695s] Loading trace points... [0.075s] Sorting trace points... [2.591s] Computing alignments... [99.434s] Deallocating buffers... [0.072s] Loading trace points... [0s] Sorting trace points... [4.131s] Computing alignments... [98.442s] Deallocating buffers... [0.756s] Loading trace points... [0s] [1681.93s] Deallocating reference... [0.074s] Loading reference sequences... [28.765s] Masking reference... [30.944s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.971s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.109s] Building query seed array... [3.132s] Computing hash join... [6.514s] Masking low complexity seeds... [0.315s] Searching alignments... [852.241s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.374s] Building query seed array... [3.939s] Computing hash join... [6.063s] Masking low complexity seeds... [0.303s] Searching alignments... [352.908s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.963s] Building query seed array... [4.153s] Computing hash join... [5.64s] Masking low complexity seeds... [0.29s] Searching alignments... [272.268s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.013s] Building query seed array... [3.208s] Computing hash join... [6.271s] Masking low complexity seeds... [0.406s] Searching alignments... [265.629s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.67s] Building query seed array... [2.964s] Computing hash join... [5.694s] Masking low complexity seeds... [0.303s] Searching alignments... [409.786s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.728s] Building query seed array... [3.576s] Computing hash join... [6.438s] Masking low complexity seeds... [0.283s] Searching alignments... [307.756s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.408s] Building query seed array... [3.537s] Computing hash join... [5.924s] Masking low complexity seeds... [0.291s] Searching alignments... [230.316s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.387s] Building query seed array... [3.123s] Computing hash join... [5.443s] Masking low complexity seeds... [0.296s] Searching alignments... [241.695s] Deallocating memory... [0s] Deallocating buffers... [1.75s] Clearing query masking... [1.982s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [18.699s] Sorting trace points... [4.205s] Computing alignments... [97.19s] Deallocating buffers... [0.494s] Loading trace points... [0.046s] Sorting trace points... [3.992s] Computing alignments... [98.3s] Deallocating buffers... [0.517s] Loading trace points... [0.061s] Sorting trace points... [3.262s] Computing alignments... [97.891s] Deallocating buffers... [0.182s] Loading trace points... [0.21s] Sorting trace points... [3.574s] Computing alignments... [100.173s] Deallocating buffers... [0.581s] Loading trace points... [0.074s] Sorting trace points... [2.99s] Computing alignments... [97.535s] Deallocating buffers... [0.182s] Loading trace points... [0s] Sorting trace points... [3.91s] Computing alignments... [99.517s] Deallocating buffers... [0.51s] Loading trace points... [0.07s] Sorting trace points... [4.116s] Computing alignments... [98.979s] Deallocating buffers... [0.547s] Loading trace points... [0.057s] Sorting trace points... [3.406s] Computing alignments... [99.675s] Deallocating buffers... [0.324s] Loading trace points... [0.061s] Sorting trace points... [2.642s] Computing alignments... [97.528s] Deallocating buffers... [0.13s] Loading trace points... [0s] Sorting trace points... [3.305s] Computing alignments... [98.283s] Deallocating buffers... [0.404s] Loading trace points... [0.966s] Sorting trace points... [3.497s] Computing alignments... [99.789s] Deallocating buffers... [0.245s] Loading trace points... [0.091s] Sorting trace points... [3.133s] Computing alignments... [98.917s] Deallocating buffers... [0.225s] Loading trace points... [0.061s] Sorting trace points... [2.936s] Computing alignments... [98.221s] Deallocating buffers... [0.308s] Loading trace points... [0.07s] Sorting trace points... [3.641s] Computing alignments... [97.9s] Deallocating buffers... [0.294s] Loading trace points... [0.037s] Sorting trace points... [3.619s] Computing alignments... [97.883s] Deallocating buffers... [0.485s] Loading trace points... [0s] Sorting trace points... [2.927s] Computing alignments... [96.434s] Deallocating buffers... [0.305s] Loading trace points... [0s] [1655.69s] Deallocating reference... [0.067s] Loading reference sequences... [29.758s] Masking reference... [30.913s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.007s] Building reference histograms... [32.762s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.53s] Building query seed array... [3.15s] Computing hash join... [7.26s] Masking low complexity seeds... [0.504s] Searching alignments... [869.549s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.165s] Building query seed array... [3.943s] Computing hash join... [5.772s] Masking low complexity seeds... [0.304s] Searching alignments... [361.584s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.403s] Building query seed array... [4.019s] Computing hash join... [5.835s] Masking low complexity seeds... [0.311s] Searching alignments... [274.942s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.915s] Building query seed array... [3.229s] Computing hash join... [6.382s] Masking low complexity seeds... [0.315s] Searching alignments... [266.043s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.183s] Building query seed array... [3.025s] Computing hash join... [6.177s] Masking low complexity seeds... [0.3s] Searching alignments... [404.828s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.708s] Building query seed array... [3.43s] Computing hash join... [5.331s] Masking low complexity seeds... [0.269s] Searching alignments... [310.722s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.404s] Building query seed array... [3.692s] Computing hash join... [5.265s] Masking low complexity seeds... [0.315s] Searching alignments... [229.898s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.916s] Building query seed array... [2.92s] Computing hash join... [6.099s] Masking low complexity seeds... [0.355s] Searching alignments... [249.169s] Deallocating memory... [0s] Deallocating buffers... [2.437s] Clearing query masking... [2.019s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.327s] Sorting trace points... [3.702s] Computing alignments... [103.197s] Deallocating buffers... [0.33s] Loading trace points... [0.04s] Sorting trace points... [4.346s] Computing alignments... [103.409s] Deallocating buffers... [0.885s] Loading trace points... [0.059s] Sorting trace points... [2.588s] Computing alignments... [103.2s] Deallocating buffers... [0.074s] Loading trace points... [0.065s] Sorting trace points... [3.419s] Computing alignments... [105.316s] Deallocating buffers... [0.484s] Loading trace points... [0.062s] Sorting trace points... [4.223s] Computing alignments... [102.03s] Deallocating buffers... [0.635s] Loading trace points... [0.059s] Sorting trace points... [3.249s] Computing alignments... [104.54s] Deallocating buffers... [0.443s] Loading trace points... [0.191s] Sorting trace points... [4.035s] Computing alignments... [103.559s] Deallocating buffers... [0.453s] Loading trace points... [0.074s] Sorting trace points... [3.445s] Computing alignments... [104.805s] Deallocating buffers... [0.501s] Loading trace points... [0.076s] Sorting trace points... [3.789s] Computing alignments... [102.96s] Deallocating buffers... [0.342s] Loading trace points... [0.001s] Sorting trace points... [3.03s] Computing alignments... [103.212s] Deallocating buffers... [0.067s] Loading trace points... [0.088s] Sorting trace points... [3.238s] Computing alignments... [104.9s] Deallocating buffers... [0.567s] Loading trace points... [0.037s] Sorting trace points... [3.379s] Computing alignments... [103.523s] Deallocating buffers... [0.222s] Loading trace points... [0.047s] Sorting trace points... [4.349s] Computing alignments... [103.922s] Deallocating buffers... [0.662s] Loading trace points... [0.105s] Sorting trace points... [3.416s] Computing alignments... [102.875s] Deallocating buffers... [0.263s] Loading trace points... [0.038s] Sorting trace points... [3.146s] Computing alignments... [102.866s] Deallocating buffers... [0.235s] Loading trace points... [0s] Sorting trace points... [3.481s] Computing alignments... [100.391s] Deallocating buffers... [0.24s] Loading trace points... [0s] [1737.28s] Deallocating reference... [0.073s] Loading reference sequences... [247.616s] Masking reference... [30.862s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.61s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.292s] Building query seed array... [3.189s] Computing hash join... [6.192s] Masking low complexity seeds... [0.363s] Searching alignments... [862.533s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.437s] Building query seed array... [4.38s] Computing hash join... [6.83s] Masking low complexity seeds... [0.321s] Searching alignments... [352.001s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.757s] Building query seed array... [3.926s] Computing hash join... [6.527s] Masking low complexity seeds... [0.395s] Searching alignments... [269.124s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.342s] Building query seed array... [3.341s] Computing hash join... [6.32s] Masking low complexity seeds... [0.314s] Searching alignments... [263.716s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.22s] Building query seed array... [2.952s] Computing hash join... [6.322s] Masking low complexity seeds... [0.286s] Searching alignments... [405.511s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.282s] Building query seed array... [3.562s] Computing hash join... [6.336s] Masking low complexity seeds... [0.293s] Searching alignments... [307.023s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.451s] Building query seed array... [3.685s] Computing hash join... [6.314s] Masking low complexity seeds... [0.279s] Searching alignments... [227.519s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.224s] Building query seed array... [3.123s] Computing hash join... [6.388s] Masking low complexity seeds... [0.272s] Searching alignments... [238.189s] Deallocating memory... [0s] Deallocating buffers... [1.1s] Clearing query masking... [2.205s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.646s] Sorting trace points... [3.705s] Computing alignments... [108.04s] Deallocating buffers... [0.465s] Loading trace points... [0.083s] Sorting trace points... [3.237s] Computing alignments... [108.688s] Deallocating buffers... [0.476s] Loading trace points... [0.002s] Sorting trace points... [2.771s] Computing alignments... [108.73s] Deallocating buffers... [0.199s] Loading trace points... [0.081s] Sorting trace points... [4.389s] Computing alignments... [110.206s] Deallocating buffers... [0.546s] Loading trace points... [0.042s] Sorting trace points... [3.002s] Computing alignments... [107.66s] Deallocating buffers... [0.101s] Loading trace points... [0.073s] Sorting trace points... [3.02s] Computing alignments... [110.686s] Deallocating buffers... [0.396s] Loading trace points... [0.066s] Sorting trace points... [2.748s] Computing alignments... [109.456s] Deallocating buffers... [0.206s] Loading trace points... [0.075s] Sorting trace points... [3.122s] Computing alignments... [110.428s] Deallocating buffers... [0.301s] Loading trace points... [0.06s] Sorting trace points... [2.584s] Computing alignments... [108.537s] Deallocating buffers... [0.068s] Loading trace points... [0.054s] Sorting trace points... [3.058s] Computing alignments... [109.897s] Deallocating buffers... [0.355s] Loading trace points... [0.069s] Sorting trace points... [2.633s] Computing alignments... [111.392s] Deallocating buffers... [0.229s] Loading trace points... [0.084s] Sorting trace points... [3.998s] Computing alignments... [109.672s] Deallocating buffers... [0.489s] Loading trace points... [0.069s] Sorting trace points... [3.455s] Computing alignments... [109.099s] Deallocating buffers... [0.453s] Loading trace points... [0.066s] Sorting trace points... [2.708s] Computing alignments... [108.868s] Deallocating buffers... [0.233s] Loading trace points... [0.067s] Sorting trace points... [2.696s] Computing alignments... [108.349s] Deallocating buffers... [0.196s] Loading trace points... [0s] Sorting trace points... [3.852s] Computing alignments... [106.423s] Deallocating buffers... [0.506s] Loading trace points... [0s] [1821.99s] Deallocating reference... [0.063s] Loading reference sequences... [258.472s] Masking reference... [31.142s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.142s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.887s] Building query seed array... [3.133s] Computing hash join... [6.23s] Masking low complexity seeds... [0.553s] Searching alignments... [849.908s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.357s] Building query seed array... [4.115s] Computing hash join... [5.985s] Masking low complexity seeds... [0.289s] Searching alignments... [352.807s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.263s] Building query seed array... [3.921s] Computing hash join... [5.957s] Masking low complexity seeds... [0.289s] Searching alignments... [268.502s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.023s] Building query seed array... [3.303s] Computing hash join... [5.904s] Masking low complexity seeds... [0.302s] Searching alignments... [266.774s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.076s] Building query seed array... [3.031s] Computing hash join... [6.016s] Masking low complexity seeds... [0.292s] Searching alignments... [401.595s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.26s] Building query seed array... [3.601s] Computing hash join... [5.855s] Masking low complexity seeds... [0.338s] Searching alignments... [308.628s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.274s] Building query seed array... [3.734s] Computing hash join... [5.77s] Masking low complexity seeds... [0.285s] Searching alignments... [226.972s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.054s] Building query seed array... [3.23s] Computing hash join... [5.9s] Masking low complexity seeds... [0.311s] Searching alignments... [236.152s] Deallocating memory... [0s] Deallocating buffers... [1.084s] Clearing query masking... [2.087s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.743s] Sorting trace points... [3.566s] Computing alignments... [90.197s] Deallocating buffers... [0.074s] Loading trace points... [0.066s] Sorting trace points... [3.2s] Computing alignments... [92.33s] Deallocating buffers... [0.479s] Loading trace points... [0.081s] Sorting trace points... [3.857s] Computing alignments... [91.223s] Deallocating buffers... [0.381s] Loading trace points... [0.086s] Sorting trace points... [2.671s] Computing alignments... [94.867s] Deallocating buffers... [0.073s] Loading trace points... [0.074s] Sorting trace points... [3.931s] Computing alignments... [90.822s] Deallocating buffers... [0.636s] Loading trace points... [0.049s] Sorting trace points... [3.13s] Computing alignments... [92.558s] Deallocating buffers... [0.179s] Loading trace points... [0.07s] Sorting trace points... [4.251s] Computing alignments... [91.784s] Deallocating buffers... [0.699s] Loading trace points... [0.073s] Sorting trace points... [4.389s] Computing alignments... [93.498s] Deallocating buffers... [0.435s] Loading trace points... [0.063s] Sorting trace points... [2.732s] Computing alignments... [91.858s] Deallocating buffers... [0.157s] Loading trace points... [0.054s] Sorting trace points... [3.757s] Computing alignments... [92.683s] Deallocating buffers... [0.428s] Loading trace points... [0.085s] Sorting trace points... [2.603s] Computing alignments... [92.891s] Deallocating buffers... [0.047s] Loading trace points... [0.054s] Sorting trace points... [3.483s] Computing alignments... [94.867s] Deallocating buffers... [0.216s] Loading trace points... [0.059s] Sorting trace points... [3.76s] Computing alignments... [92.357s] Deallocating buffers... [0.428s] Loading trace points... [0.047s] Sorting trace points... [4.243s] Computing alignments... [92.539s] Deallocating buffers... [0.616s] Loading trace points... [0.047s] Sorting trace points... [3.532s] Computing alignments... [91.625s] Deallocating buffers... [0.339s] Loading trace points... [0s] Sorting trace points... [3.308s] Computing alignments... [90.313s] Deallocating buffers... [0.187s] Loading trace points... [0s] [1556.96s] Deallocating reference... [0.067s] Loading reference sequences... [31.16s] Masking reference... [31.039s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.231s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.578s] Building query seed array... [3.219s] Computing hash join... [6.979s] Masking low complexity seeds... [0.379s] Searching alignments... [855.975s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.814s] Building query seed array... [3.808s] Computing hash join... [6.182s] Masking low complexity seeds... [0.325s] Searching alignments... [353.793s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.717s] Building query seed array... [3.816s] Computing hash join... [6.673s] Masking low complexity seeds... [0.295s] Searching alignments... [268.15s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.906s] Building query seed array... [3.363s] Computing hash join... [5.452s] Masking low complexity seeds... [0.325s] Searching alignments... [266.71s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.337s] Building query seed array... [2.982s] Computing hash join... [5.835s] Masking low complexity seeds... [0.319s] Searching alignments... [412.322s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.837s] Building query seed array... [3.279s] Computing hash join... [5.792s] Masking low complexity seeds... [0.293s] Searching alignments... [309.021s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.135s] Building query seed array... [3.681s] Computing hash join... [5.207s] Masking low complexity seeds... [0.295s] Searching alignments... [227.318s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.774s] Building query seed array... [2.99s] Computing hash join... [5.989s] Masking low complexity seeds... [0.329s] Searching alignments... [240.63s] Deallocating memory... [0s] Deallocating buffers... [2.113s] Clearing query masking... [2.054s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [19.629s] Sorting trace points... [3.72s] Computing alignments... [90.917s] Deallocating buffers... [0.447s] Loading trace points... [0.089s] Sorting trace points... [4.103s] Computing alignments... [92.381s] Deallocating buffers... [0.737s] Loading trace points... [0.075s] Sorting trace points... [2.884s] Computing alignments... [91.437s] Deallocating buffers... [0.046s] Loading trace points... [0.093s] Sorting trace points... [4.011s] Computing alignments... [94.576s] Deallocating buffers... [0.547s] Loading trace points... [0.064s] Sorting trace points... [4.168s] Computing alignments... [90.644s] Deallocating buffers... [0.54s] Loading trace points... [0.076s] Sorting trace points... [3.075s] Computing alignments... [91.829s] Deallocating buffers... [0.318s] Loading trace points... [0.066s] Sorting trace points... [3.016s] Computing alignments... [91.914s] Deallocating buffers... [0.173s] Loading trace points... [0.087s] Sorting trace points... [3.035s] Computing alignments... [93.496s] Deallocating buffers... [0.201s] Loading trace points... [0.077s] Sorting trace points... [2.91s] Computing alignments... [92.105s] Deallocating buffers... [0.331s] Loading trace points... [0.049s] Sorting trace points... [3.82s] Computing alignments... [92.569s] Deallocating buffers... [0.41s] Loading trace points... [0.076s] Sorting trace points... [3.964s] Computing alignments... [92.442s] Deallocating buffers... [0.455s] Loading trace points... [0.067s] Sorting trace points... [4.436s] Computing alignments... [94.739s] Deallocating buffers... [0.735s] Loading trace points... [0.049s] Sorting trace points... [3.187s] Computing alignments... [92.045s] Deallocating buffers... [0.242s] Loading trace points... [0.052s] Sorting trace points... [3.205s] Computing alignments... [92.28s] Deallocating buffers... [0.425s] Loading trace points... [0.051s] Sorting trace points... [3.418s] Computing alignments... [91.137s] Deallocating buffers... [0.292s] Loading trace points... [0s] Sorting trace points... [3.364s] Computing alignments... [89.499s] Deallocating buffers... [0.178s] Loading trace points... [0s] [1557.16s] Deallocating reference... [0.073s] Loading reference sequences... [31.108s] Masking reference... [30.901s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.572s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.931s] Building query seed array... [3.155s] Computing hash join... [6.341s] Masking low complexity seeds... [0.361s] Searching alignments... [858.453s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.683s] Building query seed array... [3.92s] Computing hash join... [6.551s] Masking low complexity seeds... [0.369s] Searching alignments... [352.147s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.595s] Building query seed array... [3.968s] Computing hash join... [6.383s] Masking low complexity seeds... [0.296s] Searching alignments... [270.333s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.982s] Building query seed array... [3.341s] Computing hash join... [5.744s] Masking low complexity seeds... [0.304s] Searching alignments... [264.569s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.839s] Building query seed array... [3.073s] Computing hash join... [5.783s] Masking low complexity seeds... [0.302s] Searching alignments... [403.204s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.896s] Building query seed array... [3.303s] Computing hash join... [5.925s] Masking low complexity seeds... [0.325s] Searching alignments... [309.169s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.412s] Building query seed array... [3.705s] Computing hash join... [6.005s] Masking low complexity seeds... [0.309s] Searching alignments... [228.971s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.342s] Building query seed array... [3.024s] Computing hash join... [6.135s] Masking low complexity seeds... [0.301s] Searching alignments... [240.183s] Deallocating memory... [0s] Deallocating buffers... [1.618s] Clearing query masking... [2.006s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.783s] Sorting trace points... [3.496s] Computing alignments... [87.335s] Deallocating buffers... [0.13s] Loading trace points... [0.061s] Sorting trace points... [4.509s] Computing alignments... [88.038s] Deallocating buffers... [0.927s] Loading trace points... [0.095s] Sorting trace points... [3.954s] Computing alignments... [87.781s] Deallocating buffers... [0.231s] Loading trace points... [0.094s] Sorting trace points... [4.591s] Computing alignments... [90.532s] Deallocating buffers... [0.942s] Loading trace points... [0.085s] Sorting trace points... [3.092s] Computing alignments... [87.545s] Deallocating buffers... [0.044s] Loading trace points... [0.063s] Sorting trace points... [4.108s] Computing alignments... [88.459s] Deallocating buffers... [0.733s] Loading trace points... [0.068s] Sorting trace points... [4.058s] Computing alignments... [88.279s] Deallocating buffers... [0.32s] Loading trace points... [0.637s] Sorting trace points... [4.15s] Computing alignments... [90.476s] Deallocating buffers... [0.733s] Loading trace points... [0.086s] Sorting trace points... [3.62s] Computing alignments... [88.059s] Deallocating buffers... [0.165s] Loading trace points... [0.063s] Sorting trace points... [3.086s] Computing alignments... [88.366s] Deallocating buffers... [0.31s] Loading trace points... [0.061s] Sorting trace points... [2.969s] Computing alignments... [89.275s] Deallocating buffers... [0.492s] Loading trace points... [0.059s] Sorting trace points... [4.04s] Computing alignments... [90.859s] Deallocating buffers... [0.376s] Loading trace points... [0.001s] Sorting trace points... [3.936s] Computing alignments... [88.995s] Deallocating buffers... [0.524s] Loading trace points... [0.07s] Sorting trace points... [3.971s] Computing alignments... [89.026s] Deallocating buffers... [0.455s] Loading trace points... [0.001s] Sorting trace points... [3.689s] Computing alignments... [88.864s] Deallocating buffers... [0.626s] Loading trace points... [0s] Sorting trace points... [3.698s] Computing alignments... [86.642s] Deallocating buffers... [0.165s] Loading trace points... [0s] [1506.02s] Deallocating reference... [0.074s] Loading reference sequences... [31.423s] Masking reference... [32.155s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [31.816s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.071s] Building query seed array... [3.165s] Computing hash join... [5.913s] Masking low complexity seeds... [0.328s] Searching alignments... [865.046s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.257s] Building query seed array... [4.291s] Computing hash join... [6.561s] Masking low complexity seeds... [0.297s] Searching alignments... [355.187s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.388s] Building query seed array... [4.037s] Computing hash join... [6.395s] Masking low complexity seeds... [0.364s] Searching alignments... [274.198s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.503s] Building query seed array... [3.293s] Computing hash join... [6.041s] Masking low complexity seeds... [0.361s] Searching alignments... [269.527s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.412s] Building query seed array... [3.016s] Computing hash join... [5.854s] Masking low complexity seeds... [0.291s] Searching alignments... [410.542s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.647s] Building query seed array... [3.506s] Computing hash join... [6.371s] Masking low complexity seeds... [0.326s] Searching alignments... [306.427s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.704s] Building query seed array... [3.575s] Computing hash join... [6.197s] Masking low complexity seeds... [0.281s] Searching alignments... [232.898s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.057s] Building query seed array... [3.034s] Computing hash join... [6.188s] Masking low complexity seeds... [0.295s] Searching alignments... [245.528s] Deallocating memory... [0s] Deallocating buffers... [1.574s] Clearing query masking... [2.349s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [18.785s] Sorting trace points... [4.183s] Computing alignments... [104.761s] Deallocating buffers... [0.753s] Loading trace points... [1.061s] Sorting trace points... [3.192s] Computing alignments... [105.238s] Deallocating buffers... [0.225s] Loading trace points... [0.06s] Sorting trace points... [3.435s] Computing alignments... [104.457s] Deallocating buffers... [0.33s] Loading trace points... [0s] Sorting trace points... [3.799s] Computing alignments... [106.25s] Deallocating buffers... [0.766s] Loading trace points... [0.073s] Sorting trace points... [2.603s] Computing alignments... [103.774s] Deallocating buffers... [0.122s] Loading trace points... [0.053s] Sorting trace points... [3.989s] Computing alignments... [107.021s] Deallocating buffers... [0.699s] Loading trace points... [0.096s] Sorting trace points... [2.711s] Computing alignments... [106.206s] Deallocating buffers... [0.114s] Loading trace points... [0.09s] Sorting trace points... [3.554s] Computing alignments... [107.331s] Deallocating buffers... [0.522s] Loading trace points... [0.085s] Sorting trace points... [3.357s] Computing alignments... [104.684s] Deallocating buffers... [0.169s] Loading trace points... [0.068s] Sorting trace points... [3.665s] Computing alignments... [105.354s] Deallocating buffers... [0.405s] Loading trace points... [0.069s] Sorting trace points... [4.38s] Computing alignments... [107.381s] Deallocating buffers... [0.669s] Loading trace points... [0.074s] Sorting trace points... [3.785s] Computing alignments... [105.183s] Deallocating buffers... [0.209s] Loading trace points... [0.061s] Sorting trace points... [4.445s] Computing alignments... [104.665s] Deallocating buffers... [0.345s] Loading trace points... [0.054s] Sorting trace points... [2.929s] Computing alignments... [105.198s] Deallocating buffers... [0.372s] Loading trace points... [0.049s] Sorting trace points... [2.858s] Computing alignments... [105.06s] Deallocating buffers... [0.189s] Loading trace points... [0s] Sorting trace points... [2.731s] Computing alignments... [102.786s] Deallocating buffers... [0.289s] Loading trace points... [0s] [1767.99s] Deallocating reference... [0.08s] Loading reference sequences... [28.881s] Masking reference... [32.103s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.194s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.144s] Building query seed array... [3.161s] Computing hash join... [6.087s] Masking low complexity seeds... [0.331s] Searching alignments... [857.767s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.624s] Building query seed array... [3.931s] Computing hash join... [6.32s] Masking low complexity seeds... [0.335s] Searching alignments... [353.438s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.159s] Building query seed array... [3.88s] Computing hash join... [6.264s] Masking low complexity seeds... [0.397s] Searching alignments... [265.002s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.8s] Building query seed array... [3.286s] Computing hash join... [5.946s] Masking low complexity seeds... [0.304s] Searching alignments... [265.527s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.327s] Building query seed array... [2.951s] Computing hash join... [5.836s] Masking low complexity seeds... [0.313s] Searching alignments... [397.84s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.41s] Building query seed array... [3.544s] Computing hash join... [6.086s] Masking low complexity seeds... [0.297s] Searching alignments... [306.256s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.74s] Building query seed array... [3.673s] Computing hash join... [5.808s] Masking low complexity seeds... [0.31s] Searching alignments... [227.257s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.276s] Building query seed array... [3.176s] Computing hash join... [6.066s] Masking low complexity seeds... [0.31s] Searching alignments... [240.274s] Deallocating memory... [0s] Deallocating buffers... [1.299s] Clearing query masking... [2.162s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.069s] Sorting trace points... [3.486s] Computing alignments... [85.611s] Deallocating buffers... [0.203s] Loading trace points... [0.057s] Sorting trace points... [4.383s] Computing alignments... [85.83s] Deallocating buffers... [0.384s] Loading trace points... [0.064s] Sorting trace points... [3.648s] Computing alignments... [86.262s] Deallocating buffers... [0.372s] Loading trace points... [0.091s] Sorting trace points... [4.717s] Computing alignments... [88.91s] Deallocating buffers... [0.815s] Loading trace points... [0.059s] Sorting trace points... [3.136s] Computing alignments... [85.818s] Deallocating buffers... [0.043s] Loading trace points... [0.051s] Sorting trace points... [3.887s] Computing alignments... [86.307s] Deallocating buffers... [0.616s] Loading trace points... [0.076s] Sorting trace points... [2.945s] Computing alignments... [86.432s] Deallocating buffers... [0.249s] Loading trace points... [0.069s] Sorting trace points... [4.457s] Computing alignments... [87.907s] Deallocating buffers... [0.766s] Loading trace points... [0.075s] Sorting trace points... [2.575s] Computing alignments... [85.488s] Deallocating buffers... [0.07s] Loading trace points... [0.075s] Sorting trace points... [3.352s] Computing alignments... [85.852s] Deallocating buffers... [0.447s] Loading trace points... [0.114s] Sorting trace points... [3.675s] Computing alignments... [86.674s] Deallocating buffers... [0.436s] Loading trace points... [0.086s] Sorting trace points... [2.919s] Computing alignments... [88.516s] Deallocating buffers... [0.089s] Loading trace points... [0.051s] Sorting trace points... [3.838s] Computing alignments... [86.461s] Deallocating buffers... [0.531s] Loading trace points... [0.05s] Sorting trace points... [2.781s] Computing alignments... [86.801s] Deallocating buffers... [0.134s] Loading trace points... [0.046s] Sorting trace points... [3.107s] Computing alignments... [86.449s] Deallocating buffers... [0.237s] Loading trace points... [0s] Sorting trace points... [3.809s] Computing alignments... [85.027s] Deallocating buffers... [0.517s] Loading trace points... [0s] [1466.16s] Deallocating reference... [0.062s] Loading reference sequences... [30.44s] Masking reference... [32.177s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.438s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.485s] Building query seed array... [3.192s] Computing hash join... [6.561s] Masking low complexity seeds... [0.464s] Searching alignments... [858.709s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.367s] Building query seed array... [4.152s] Computing hash join... [6.929s] Masking low complexity seeds... [0.388s] Searching alignments... [352.003s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.157s] Building query seed array... [4.084s] Computing hash join... [6.649s] Masking low complexity seeds... [0.301s] Searching alignments... [271.754s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.957s] Building query seed array... [3.233s] Computing hash join... [6.893s] Masking low complexity seeds... [0.301s] Searching alignments... [265.94s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.06s] Building query seed array... [3.107s] Computing hash join... [6.346s] Masking low complexity seeds... [0.281s] Searching alignments... [409.772s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.228s] Building query seed array... [3.413s] Computing hash join... [6.854s] Masking low complexity seeds... [0.306s] Searching alignments... [307.848s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.353s] Building query seed array... [3.746s] Computing hash join... [6.394s] Masking low complexity seeds... [0.279s] Searching alignments... [230.456s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.103s] Building query seed array... [3.095s] Computing hash join... [6.56s] Masking low complexity seeds... [0.346s] Searching alignments... [239.71s] Deallocating memory... [0s] Deallocating buffers... [1.011s] Clearing query masking... [2.318s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.293s] Sorting trace points... [3.564s] Computing alignments... [106.465s] Deallocating buffers... [0.073s] Loading trace points... [0.08s] Sorting trace points... [4.056s] Computing alignments... [108.416s] Deallocating buffers... [0.355s] Loading trace points... [0.077s] Sorting trace points... [3.457s] Computing alignments... [107.768s] Deallocating buffers... [0.57s] Loading trace points... [0.091s] Sorting trace points... [3.814s] Computing alignments... [110.03s] Deallocating buffers... [0.625s] Loading trace points... [0.156s] Sorting trace points... [4.455s] Computing alignments... [107.12s] Deallocating buffers... [0.834s] Loading trace points... [0.129s] Sorting trace points... [3.905s] Computing alignments... [109.841s] Deallocating buffers... [0.566s] Loading trace points... [0.054s] Sorting trace points... [4.62s] Computing alignments... [108.504s] Deallocating buffers... [0.65s] Loading trace points... [0.063s] Sorting trace points... [3.268s] Computing alignments... [110.125s] Deallocating buffers... [0.056s] Loading trace points... [0.048s] Sorting trace points... [3.309s] Computing alignments... [107.791s] Deallocating buffers... [0.377s] Loading trace points... [0.082s] Sorting trace points... [2.876s] Computing alignments... [109.475s] Deallocating buffers... [0.363s] Loading trace points... [0.088s] Sorting trace points... [3.418s] Computing alignments... [110.801s] Deallocating buffers... [0.472s] Loading trace points... [0.119s] Sorting trace points... [3.875s] Computing alignments... [109.271s] Deallocating buffers... [0.622s] Loading trace points... [0.118s] Sorting trace points... [3.057s] Computing alignments... [108.714s] Deallocating buffers... [0.266s] Loading trace points... [0.081s] Sorting trace points... [2.776s] Computing alignments... [108.18s] Deallocating buffers... [0.386s] Loading trace points... [0.097s] Sorting trace points... [3.778s] Computing alignments... [107.349s] Deallocating buffers... [0.671s] Loading trace points... [0s] Sorting trace points... [3.502s] Computing alignments... [105.395s] Deallocating buffers... [0.08s] Loading trace points... [0s] [1819.78s] Deallocating reference... [0.079s] Loading reference sequences... [246.693s] Masking reference... [30.869s] Initializing dictionary... [0.139s] Initializing temporary storage... [0.002s] Building reference histograms... [33.497s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.461s] Building query seed array... [3.199s] Computing hash join... [6.598s] Masking low complexity seeds... [0.37s] Searching alignments... [860.418s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.423s] Building query seed array... [4.373s] Computing hash join... [6.43s] Masking low complexity seeds... [0.303s] Searching alignments... [352.664s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.345s] Building query seed array... [3.938s] Computing hash join... [5.898s] Masking low complexity seeds... [0.307s] Searching alignments... [271.267s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.073s] Building query seed array... [3.396s] Computing hash join... [5.542s] Masking low complexity seeds... [0.351s] Searching alignments... [270.385s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.704s] Building query seed array... [3.14s] Computing hash join... [5.146s] Masking low complexity seeds... [0.321s] Searching alignments... [402.302s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.012s] Building query seed array... [3.523s] Computing hash join... [5.476s] Masking low complexity seeds... [0.271s] Searching alignments... [314.684s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.478s] Building query seed array... [3.751s] Computing hash join... [6.005s] Masking low complexity seeds... [0.305s] Searching alignments... [228.292s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.451s] Building query seed array... [3.013s] Computing hash join... [5.234s] Masking low complexity seeds... [0.29s] Searching alignments... [246.261s] Deallocating memory... [0s] Deallocating buffers... [2.69s] Clearing query masking... [1.946s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [19.003s] Sorting trace points... [3.779s] Computing alignments... [107.338s] Deallocating buffers... [0.479s] Loading trace points... [0.052s] Sorting trace points... [3.994s] Computing alignments... [106.704s] Deallocating buffers... [0.479s] Loading trace points... [0.065s] Sorting trace points... [2.945s] Computing alignments... [108.035s] Deallocating buffers... [0.205s] Loading trace points... [0.116s] Sorting trace points... [4.044s] Computing alignments... [108.811s] Deallocating buffers... [0.535s] Loading trace points... [0.065s] Sorting trace points... [2.969s] Computing alignments... [107.172s] Deallocating buffers... [0.201s] Loading trace points... [0.062s] Sorting trace points... [3.912s] Computing alignments... [109.21s] Deallocating buffers... [0.364s] Loading trace points... [0.082s] Sorting trace points... [3.179s] Computing alignments... [108.67s] Deallocating buffers... [0.287s] Loading trace points... [0.068s] Sorting trace points... [2.97s] Computing alignments... [109.128s] Deallocating buffers... [0.284s] Loading trace points... [0.09s] Sorting trace points... [3.223s] Computing alignments... [107.238s] Deallocating buffers... [0.448s] Loading trace points... [0.743s] Sorting trace points... [2.706s] Computing alignments... [108.407s] Deallocating buffers... [0.146s] Loading trace points... [0.097s] Sorting trace points... [3.266s] Computing alignments... [109.449s] Deallocating buffers... [0.443s] Loading trace points... [0.058s] Sorting trace points... [3.545s] Computing alignments... [107.939s] Deallocating buffers... [0.444s] Loading trace points... [0.094s] Sorting trace points... [3.059s] Computing alignments... [108.217s] Deallocating buffers... [0.272s] Loading trace points... [0.035s] Sorting trace points... [3.709s] Computing alignments... [107.293s] Deallocating buffers... [0.409s] Loading trace points... [0.045s] Sorting trace points... [2.795s] Computing alignments... [107.118s] Deallocating buffers... [0.131s] Loading trace points... [0s] Sorting trace points... [3.232s] Computing alignments... [104.446s] Deallocating buffers... [0.534s] Loading trace points... [0s] [1805.01s] Deallocating reference... [0.082s] Loading reference sequences... [30.321s] Masking reference... [31.136s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.621s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.309s] Building query seed array... [3.194s] Computing hash join... [6.903s] Masking low complexity seeds... [0.466s] Searching alignments... [867.429s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.873s] Building query seed array... [3.941s] Computing hash join... [5.903s] Masking low complexity seeds... [0.358s] Searching alignments... [353.472s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.939s] Building query seed array... [4.106s] Computing hash join... [6.166s] Masking low complexity seeds... [0.341s] Searching alignments... [268.163s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.626s] Building query seed array... [3.292s] Computing hash join... [5.704s] Masking low complexity seeds... [0.336s] Searching alignments... [262.181s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.562s] Building query seed array... [3.069s] Computing hash join... [5.165s] Masking low complexity seeds... [0.266s] Searching alignments... [404.599s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.945s] Building query seed array... [3.421s] Computing hash join... [5.689s] Masking low complexity seeds... [0.302s] Searching alignments... [308.598s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.159s] Building query seed array... [3.763s] Computing hash join... [5.524s] Masking low complexity seeds... [0.294s] Searching alignments... [230.288s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.462s] Building query seed array... [3.1s] Computing hash join... [5.914s] Masking low complexity seeds... [0.355s] Searching alignments... [240.384s] Deallocating memory... [0s] Deallocating buffers... [2.014s] Clearing query masking... [2.103s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.966s] Sorting trace points... [3.557s] Computing alignments... [101.828s] Deallocating buffers... [0.657s] Loading trace points... [0.062s] Sorting trace points... [3.344s] Computing alignments... [103.384s] Deallocating buffers... [0.11s] Loading trace points... [0.101s] Sorting trace points... [4.017s] Computing alignments... [103.161s] Deallocating buffers... [0.594s] Loading trace points... [0.001s] Sorting trace points... [3.278s] Computing alignments... [105.11s] Deallocating buffers... [0.141s] Loading trace points... [0.096s] Sorting trace points... [3.828s] Computing alignments... [102.577s] Deallocating buffers... [0.563s] Loading trace points... [0.06s] Sorting trace points... [3.725s] Computing alignments... [104.929s] Deallocating buffers... [0.104s] Loading trace points... [0.076s] Sorting trace points... [3.185s] Computing alignments... [103.987s] Deallocating buffers... [0.407s] Loading trace points... [0.08s] Sorting trace points... [3.789s] Computing alignments... [105.373s] Deallocating buffers... [0.346s] Loading trace points... [0.074s] Sorting trace points... [4.153s] Computing alignments... [103.708s] Deallocating buffers... [0.488s] Loading trace points... [0.054s] Sorting trace points... [4.52s] Computing alignments... [104.553s] Deallocating buffers... [0.801s] Loading trace points... [0.048s] Sorting trace points... [3.754s] Computing alignments... [105.746s] Deallocating buffers... [0.204s] Loading trace points... [0.061s] Sorting trace points... [4.306s] Computing alignments... [103.988s] Deallocating buffers... [0.576s] Loading trace points... [0.06s] Sorting trace points... [4.581s] Computing alignments... [103.725s] Deallocating buffers... [0.84s] Loading trace points... [0.067s] Sorting trace points... [3.542s] Computing alignments... [103.199s] Deallocating buffers... [0.429s] Loading trace points... [0.155s] Sorting trace points... [3.118s] Computing alignments... [103.347s] Deallocating buffers... [0.308s] Loading trace points... [0s] Sorting trace points... [2.782s] Computing alignments... [100.647s] Deallocating buffers... [0.197s] Loading trace points... [0s] [1745.65s] Deallocating reference... [0.073s] Loading reference sequences... [23.597s] Masking reference... [25.026s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.007s] Building reference histograms... [26.877s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.337s] Building query seed array... [3.119s] Computing hash join... [5.38s] Masking low complexity seeds... [0.282s] Searching alignments... [684.048s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.298s] Building query seed array... [4.354s] Computing hash join... [4.911s] Masking low complexity seeds... [0.305s] Searching alignments... [285.126s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.256s] Building query seed array... [4.041s] Computing hash join... [4.672s] Masking low complexity seeds... [0.293s] Searching alignments... [216.188s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.776s] Building query seed array... [3.496s] Computing hash join... [4.73s] Masking low complexity seeds... [0.281s] Searching alignments... [219.507s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.82s] Building query seed array... [3.112s] Computing hash join... [4.451s] Masking low complexity seeds... [0.258s] Searching alignments... [324.617s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.011s] Building query seed array... [3.593s] Computing hash join... [4.611s] Masking low complexity seeds... [0.283s] Searching alignments... [247.618s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.786s] Building query seed array... [3.539s] Computing hash join... [4.746s] Masking low complexity seeds... [0.282s] Searching alignments... [184.722s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.263s] Building query seed array... [3.091s] Computing hash join... [4.5s] Masking low complexity seeds... [0.265s] Searching alignments... [191.698s] Deallocating memory... [0s] Deallocating buffers... [1.426s] Clearing query masking... [2.008s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.824s] Sorting trace points... [2.871s] Computing alignments... [77.561s] Deallocating buffers... [0.05s] Loading trace points... [0.04s] Sorting trace points... [2.871s] Computing alignments... [78.339s] Deallocating buffers... [0.05s] Loading trace points... [0.056s] Sorting trace points... [3.064s] Computing alignments... [78.753s] Deallocating buffers... [0.165s] Loading trace points... [0.052s] Sorting trace points... [2.611s] Computing alignments... [79.878s] Deallocating buffers... [0.287s] Loading trace points... [0.072s] Sorting trace points... [2.139s] Computing alignments... [77.737s] Deallocating buffers... [0.055s] Loading trace points... [0.073s] Sorting trace points... [2.571s] Computing alignments... [79.475s] Deallocating buffers... [0.239s] Loading trace points... [0.057s] Sorting trace points... [2.744s] Computing alignments... [78.776s] Deallocating buffers... [0.26s] Loading trace points... [0.075s] Sorting trace points... [3.283s] Computing alignments... [80.542s] Deallocating buffers... [0.406s] Loading trace points... [0.074s] Sorting trace points... [2.776s] Computing alignments... [78.164s] Deallocating buffers... [0.312s] Loading trace points... [0.44s] Sorting trace points... [2.448s] Computing alignments... [78.9s] Deallocating buffers... [0.186s] Loading trace points... [0.072s] Sorting trace points... [2.33s] Computing alignments... [79.744s] Deallocating buffers... [0.039s] Loading trace points... [0.07s] Sorting trace points... [3.207s] Computing alignments... [79.568s] Deallocating buffers... [0.416s] Loading trace points... [0.09s] Sorting trace points... [2.957s] Computing alignments... [79.006s] Deallocating buffers... [0.05s] Loading trace points... [0.064s] Sorting trace points... [2.455s] Computing alignments... [77.955s] Deallocating buffers... [0.237s] Loading trace points... [0.002s] Sorting trace points... [2.159s] Computing alignments... [78.169s] Deallocating buffers... [0.086s] Loading trace points... [0s] Sorting trace points... [2.301s] Computing alignments... [77.015s] Deallocating buffers... [0.055s] Loading trace points... [0s] [1321.5s] Deallocating reference... [0.049s] Loading reference sequences... [0.077s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [5538.66s] [5538.66s] Deallocating queries... [0.1s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.354s] [4.342s] Closing the database... [0s] Cleaning up... [0s] Total time = 73695.5s Reported 5681716910 pairwise alignments, 5681716910 HSPs. 7709948 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-14.trimmed.R2.fastq.gz complete: CH01-14.trimmed.R2.blastx.meganized.daa Now MEGANizing CH01-14.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH01-14.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (402.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9,767.3s) Total reads: 7,709,948 With hits: 7,709,948 Alignments: 4,533,740,721 Assig. Taxonomy: 4,619,613 Assig. SEED: 183,421 Assig. EGGNOG: 42,736 Assig. GTDB: 342,885 Assig. EC: 700,978 Assig. INTERPRO2GO: 2,022,053 MinSupport set to: 3854 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 6,980 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (33.2s) Min-supp. changes: 5,300 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.9s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 172 Class. SEED: 498 Class. EGGNOG: 1,650 Class. GTDB: 50 Class. EC: 2,440 Class. INTERPRO2GO: 8,975 Total time: 10,225s Peak memory: 40.2 of 195.3G MEGANization of CH01-14.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-22.trimmed.R1.fastq.gz... f0077babb1833c01d7251db942404170 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-22.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-22.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [1.309s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.759s] Opening the output file... [0s] Loading query sequences... [86.484s] Masking queries... [24.659s] Algorithm: Double-indexed Building query histograms... [18.183s] Loading reference sequences... [28.996s] Masking reference... [30.808s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.83s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.274s] Building query seed array... [2.117s] Computing hash join... [5.914s] Masking low complexity seeds... [0.23s] Searching alignments... [283.268s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.504s] Building query seed array... [2.652s] Computing hash join... [5.753s] Masking low complexity seeds... [0.238s] Searching alignments... [114.604s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.555s] Building query seed array... [2.527s] Computing hash join... [5.21s] Masking low complexity seeds... [0.221s] Searching alignments... [93.711s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.239s] Building query seed array... [2.164s] Computing hash join... [5.406s] Masking low complexity seeds... [0.264s] Searching alignments... [86.864s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.196s] Building query seed array... [2.021s] Computing hash join... [5.812s] Masking low complexity seeds... [0.242s] Searching alignments... [127.223s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.327s] Building query seed array... [2.321s] Computing hash join... [4.862s] Masking low complexity seeds... [0.214s] Searching alignments... [103.255s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.446s] Building query seed array... [2.371s] Computing hash join... [4.907s] Masking low complexity seeds... [0.244s] Searching alignments... [80.348s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.121s] Building query seed array... [2.144s] Computing hash join... [4.912s] Masking low complexity seeds... [0.23s] Searching alignments... [82.2s] Deallocating memory... [0s] Deallocating buffers... [0.995s] Clearing query masking... [1.403s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.234s] Sorting trace points... [1.125s] Computing alignments... [39.728s] Deallocating buffers... [0.024s] Loading trace points... [0.082s] Sorting trace points... [1.347s] Computing alignments... [39.981s] Deallocating buffers... [0.025s] Loading trace points... [0.085s] Sorting trace points... [1.05s] Computing alignments... [39.112s] Deallocating buffers... [0.025s] Loading trace points... [0.066s] Sorting trace points... [1.359s] Computing alignments... [40.183s] Deallocating buffers... [0.025s] Loading trace points... [0.07s] Sorting trace points... [1.297s] Computing alignments... [37.946s] Deallocating buffers... [0.015s] Loading trace points... [0.042s] Sorting trace points... [0.907s] Computing alignments... [37.623s] Deallocating buffers... [0.024s] Loading trace points... [0.072s] Sorting trace points... [0.995s] Computing alignments... [39.238s] Deallocating buffers... [0.025s] Loading trace points... [0.048s] Sorting trace points... [1.124s] Computing alignments... [39.297s] Deallocating buffers... [0.019s] Loading trace points... [0.05s] Sorting trace points... [1.257s] Computing alignments... [38.866s] Deallocating buffers... [0.023s] Loading trace points... [0.054s] Sorting trace points... [1.349s] Computing alignments... [39.542s] Deallocating buffers... [0.016s] Loading trace points... [0.074s] Sorting trace points... [1.257s] Computing alignments... [40.408s] Deallocating buffers... [0.027s] Loading trace points... [0.089s] Sorting trace points... [1.061s] Computing alignments... [40.311s] Deallocating buffers... [0.026s] Loading trace points... [0.076s] Sorting trace points... [1.258s] Computing alignments... [40.094s] Deallocating buffers... [0.028s] Loading trace points... [0.061s] Sorting trace points... [1.358s] Computing alignments... [39.269s] Deallocating buffers... [0.024s] Loading trace points... [0.073s] Sorting trace points... [1.182s] Computing alignments... [38.682s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.345s] Computing alignments... [39.956s] Deallocating buffers... [0.024s] Loading trace points... [0s] [659.038s] Deallocating reference... [0.079s] Loading reference sequences... [29.269s] Masking reference... [32.135s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.008s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.229s] Building query seed array... [2.122s] Computing hash join... [5.407s] Masking low complexity seeds... [0.227s] Searching alignments... [280.301s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.397s] Building query seed array... [2.856s] Computing hash join... [4.996s] Masking low complexity seeds... [0.226s] Searching alignments... [114.689s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.509s] Building query seed array... [2.613s] Computing hash join... [4.981s] Masking low complexity seeds... [0.224s] Searching alignments... [89.722s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.063s] Building query seed array... [2.153s] Computing hash join... [5.069s] Masking low complexity seeds... [0.225s] Searching alignments... [87.813s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.164s] Building query seed array... [2.033s] Computing hash join... [5.509s] Masking low complexity seeds... [0.225s] Searching alignments... [126.343s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.764s] Building query seed array... [2.417s] Computing hash join... [4.924s] Masking low complexity seeds... [0.22s] Searching alignments... [102.388s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.082s] Building query seed array... [2.399s] Computing hash join... [4.974s] Masking low complexity seeds... [0.213s] Searching alignments... [79.026s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.107s] Building query seed array... [2.225s] Computing hash join... [5.212s] Masking low complexity seeds... [0.212s] Searching alignments... [80.536s] Deallocating memory... [0s] Deallocating buffers... [0.817s] Clearing query masking... [1.372s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.264s] Sorting trace points... [1.229s] Computing alignments... [41.715s] Deallocating buffers... [0.076s] Loading trace points... [0.481s] Sorting trace points... [1.028s] Computing alignments... [41.987s] Deallocating buffers... [0.072s] Loading trace points... [0.071s] Sorting trace points... [1.015s] Computing alignments... [41.646s] Deallocating buffers... [0.056s] Loading trace points... [0.076s] Sorting trace points... [1.402s] Computing alignments... [41.99s] Deallocating buffers... [0.054s] Loading trace points... [0.092s] Sorting trace points... [1.277s] Computing alignments... [38.725s] Deallocating buffers... [0.042s] Loading trace points... [0.05s] Sorting trace points... [1.003s] Computing alignments... [38.246s] Deallocating buffers... [0.058s] Loading trace points... [0.065s] Sorting trace points... [1.121s] Computing alignments... [40.81s] Deallocating buffers... [0.062s] Loading trace points... [0.001s] Sorting trace points... [1.331s] Computing alignments... [41.859s] Deallocating buffers... [0.058s] Loading trace points... [0.003s] Sorting trace points... [1.272s] Computing alignments... [41.108s] Deallocating buffers... [0.061s] Loading trace points... [0.001s] Sorting trace points... [1.039s] Computing alignments... [41.146s] Deallocating buffers... [0.059s] Loading trace points... [0.05s] Sorting trace points... [1.316s] Computing alignments... [42.01s] Deallocating buffers... [0.059s] Loading trace points... [0.075s] Sorting trace points... [1.39s] Computing alignments... [41.656s] Deallocating buffers... [0.055s] Loading trace points... [0.049s] Sorting trace points... [1.344s] Computing alignments... [42.088s] Deallocating buffers... [0.067s] Loading trace points... [0.001s] Sorting trace points... [1.079s] Computing alignments... [40.123s] Deallocating buffers... [0.04s] Loading trace points... [0.088s] Sorting trace points... [0.975s] Computing alignments... [40.694s] Deallocating buffers... [0.062s] Loading trace points... [0s] Sorting trace points... [1.15s] Computing alignments... [41.986s] Deallocating buffers... [0.061s] Loading trace points... [0s] [686.129s] Deallocating reference... [0.073s] Loading reference sequences... [31.744s] Masking reference... [31.251s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.461s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.998s] Building query seed array... [2.141s] Computing hash join... [5.625s] Masking low complexity seeds... [0.229s] Searching alignments... [277.831s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.914s] Building query seed array... [2.872s] Computing hash join... [5.73s] Masking low complexity seeds... [0.243s] Searching alignments... [115.338s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.069s] Building query seed array... [2.675s] Computing hash join... [5.717s] Masking low complexity seeds... [0.24s] Searching alignments... [93.332s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.948s] Building query seed array... [2.369s] Computing hash join... [5.078s] Masking low complexity seeds... [0.254s] Searching alignments... [86.721s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.175s] Building query seed array... [2.074s] Computing hash join... [5.011s] Masking low complexity seeds... [0.212s] Searching alignments... [127.207s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.83s] Building query seed array... [2.355s] Computing hash join... [4.887s] Masking low complexity seeds... [0.214s] Searching alignments... [101.27s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.456s] Building query seed array... [2.427s] Computing hash join... [5.214s] Masking low complexity seeds... [0.235s] Searching alignments... [78.503s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.111s] Building query seed array... [2.081s] Computing hash join... [5.871s] Masking low complexity seeds... [0.237s] Searching alignments... [79.846s] Deallocating memory... [0s] Deallocating buffers... [1.08s] Clearing query masking... [1.427s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.728s] Sorting trace points... [1.332s] Computing alignments... [42.58s] Deallocating buffers... [0.066s] Loading trace points... [0.001s] Sorting trace points... [1.362s] Computing alignments... [42.105s] Deallocating buffers... [0.06s] Loading trace points... [0.058s] Sorting trace points... [1.062s] Computing alignments... [41.105s] Deallocating buffers... [0.073s] Loading trace points... [0.083s] Sorting trace points... [1.386s] Computing alignments... [41.93s] Deallocating buffers... [0.041s] Loading trace points... [0.087s] Sorting trace points... [1.259s] Computing alignments... [39.134s] Deallocating buffers... [0.04s] Loading trace points... [0.09s] Sorting trace points... [1.137s] Computing alignments... [38.864s] Deallocating buffers... [0.04s] Loading trace points... [0.042s] Sorting trace points... [1.285s] Computing alignments... [40.913s] Deallocating buffers... [0.057s] Loading trace points... [0.083s] Sorting trace points... [1.354s] Computing alignments... [41.335s] Deallocating buffers... [0.057s] Loading trace points... [0.064s] Sorting trace points... [1.178s] Computing alignments... [40.367s] Deallocating buffers... [0.044s] Loading trace points... [0.087s] Sorting trace points... [1.329s] Computing alignments... [40.861s] Deallocating buffers... [0.051s] Loading trace points... [0.002s] Sorting trace points... [1.119s] Computing alignments... [41.706s] Deallocating buffers... [0.063s] Loading trace points... [0.061s] Sorting trace points... [1.275s] Computing alignments... [41.692s] Deallocating buffers... [0.048s] Loading trace points... [0.061s] Sorting trace points... [1.161s] Computing alignments... [42.434s] Deallocating buffers... [0.049s] Loading trace points... [0.095s] Sorting trace points... [1.042s] Computing alignments... [40.363s] Deallocating buffers... [0.045s] Loading trace points... [0.056s] Sorting trace points... [0.993s] Computing alignments... [39.771s] Deallocating buffers... [0.066s] Loading trace points... [0s] Sorting trace points... [1.074s] Computing alignments... [41.688s] Deallocating buffers... [0.05s] Loading trace points... [0s] [685.812s] Deallocating reference... [0.062s] Loading reference sequences... [29.922s] Masking reference... [30.901s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.028s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.124s] Building query seed array... [2.121s] Computing hash join... [5.816s] Masking low complexity seeds... [0.222s] Searching alignments... [279.618s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.615s] Building query seed array... [2.776s] Computing hash join... [5.63s] Masking low complexity seeds... [0.236s] Searching alignments... [112.798s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.697s] Building query seed array... [2.623s] Computing hash join... [5.293s] Masking low complexity seeds... [0.231s] Searching alignments... [92.522s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.297s] Building query seed array... [2.133s] Computing hash join... [5.211s] Masking low complexity seeds... [0.245s] Searching alignments... [87.137s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.142s] Building query seed array... [2.099s] Computing hash join... [4.961s] Masking low complexity seeds... [0.214s] Searching alignments... [133.278s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.89s] Building query seed array... [2.377s] Computing hash join... [4.862s] Masking low complexity seeds... [0.218s] Searching alignments... [102.506s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.129s] Building query seed array... [2.489s] Computing hash join... [5.058s] Masking low complexity seeds... [0.221s] Searching alignments... [78.158s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.09s] Building query seed array... [2.059s] Computing hash join... [4.946s] Masking low complexity seeds... [0.229s] Searching alignments... [80.587s] Deallocating memory... [0s] Deallocating buffers... [1.283s] Clearing query masking... [1.437s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.411s] Sorting trace points... [1.328s] Computing alignments... [41.304s] Deallocating buffers... [0.031s] Loading trace points... [0.062s] Sorting trace points... [1.284s] Computing alignments... [41.347s] Deallocating buffers... [0.039s] Loading trace points... [0.111s] Sorting trace points... [1.298s] Computing alignments... [40.864s] Deallocating buffers... [0.035s] Loading trace points... [0.063s] Sorting trace points... [1.331s] Computing alignments... [40.885s] Deallocating buffers... [0.026s] Loading trace points... [0.062s] Sorting trace points... [1.287s] Computing alignments... [39.135s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.266s] Computing alignments... [38.384s] Deallocating buffers... [0.023s] Loading trace points... [0.071s] Sorting trace points... [1.341s] Computing alignments... [40.157s] Deallocating buffers... [0.023s] Loading trace points... [0.055s] Sorting trace points... [1.295s] Computing alignments... [40.953s] Deallocating buffers... [0.023s] Loading trace points... [0.075s] Sorting trace points... [1.047s] Computing alignments... [39.58s] Deallocating buffers... [0.034s] Loading trace points... [0.403s] Sorting trace points... [1.376s] Computing alignments... [40.59s] Deallocating buffers... [0.024s] Loading trace points... [0.058s] Sorting trace points... [1.347s] Computing alignments... [41.63s] Deallocating buffers... [0.026s] Loading trace points... [0.084s] Sorting trace points... [1.382s] Computing alignments... [40.831s] Deallocating buffers... [0.024s] Loading trace points... [0.079s] Sorting trace points... [1.343s] Computing alignments... [41.616s] Deallocating buffers... [0.028s] Loading trace points... [0.047s] Sorting trace points... [1.375s] Computing alignments... [39.72s] Deallocating buffers... [0.022s] Loading trace points... [0.059s] Sorting trace points... [1.329s] Computing alignments... [40.198s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.386s] Computing alignments... [40.798s] Deallocating buffers... [0.025s] Loading trace points... [0s] [678.249s] Deallocating reference... [0.111s] Loading reference sequences... [32.072s] Masking reference... [31.269s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.252s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.255s] Building query seed array... [2.148s] Computing hash join... [5.77s] Masking low complexity seeds... [0.233s] Searching alignments... [281.03s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.567s] Building query seed array... [2.797s] Computing hash join... [5.697s] Masking low complexity seeds... [0.231s] Searching alignments... [114.481s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.599s] Building query seed array... [2.758s] Computing hash join... [5.131s] Masking low complexity seeds... [0.223s] Searching alignments... [91.508s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.497s] Building query seed array... [2.234s] Computing hash join... [5.17s] Masking low complexity seeds... [0.221s] Searching alignments... [88.119s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.094s] Building query seed array... [2.181s] Computing hash join... [4.917s] Masking low complexity seeds... [0.221s] Searching alignments... [130.29s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.005s] Building query seed array... [2.376s] Computing hash join... [5.635s] Masking low complexity seeds... [0.219s] Searching alignments... [103.983s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.419s] Building query seed array... [2.449s] Computing hash join... [4.961s] Masking low complexity seeds... [0.217s] Searching alignments... [79.615s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.101s] Building query seed array... [2.174s] Computing hash join... [5.129s] Masking low complexity seeds... [0.221s] Searching alignments... [79.674s] Deallocating memory... [0s] Deallocating buffers... [1.23s] Clearing query masking... [1.431s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.108s] Sorting trace points... [1.353s] Computing alignments... [43.603s] Deallocating buffers... [0.08s] Loading trace points... [0.069s] Sorting trace points... [1.126s] Computing alignments... [42.982s] Deallocating buffers... [0.056s] Loading trace points... [0.067s] Sorting trace points... [1.016s] Computing alignments... [42.4s] Deallocating buffers... [0.055s] Loading trace points... [0.073s] Sorting trace points... [1.18s] Computing alignments... [42.71s] Deallocating buffers... [0.048s] Loading trace points... [0.069s] Sorting trace points... [1.182s] Computing alignments... [40.152s] Deallocating buffers... [0.046s] Loading trace points... [0.047s] Sorting trace points... [1.266s] Computing alignments... [40.17s] Deallocating buffers... [0.051s] Loading trace points... [0.067s] Sorting trace points... [1.049s] Computing alignments... [42.093s] Deallocating buffers... [0.059s] Loading trace points... [0.065s] Sorting trace points... [1.344s] Computing alignments... [43.12s] Deallocating buffers... [0.043s] Loading trace points... [0.052s] Sorting trace points... [1.078s] Computing alignments... [41.053s] Deallocating buffers... [0.057s] Loading trace points... [0.06s] Sorting trace points... [1.2s] Computing alignments... [42.288s] Deallocating buffers... [0.063s] Loading trace points... [0.049s] Sorting trace points... [1.245s] Computing alignments... [43.116s] Deallocating buffers... [0.056s] Loading trace points... [0.081s] Sorting trace points... [1.32s] Computing alignments... [43.305s] Deallocating buffers... [0.048s] Loading trace points... [0.049s] Sorting trace points... [1.347s] Computing alignments... [43.721s] Deallocating buffers... [0.048s] Loading trace points... [0.076s] Sorting trace points... [1.154s] Computing alignments... [41.596s] Deallocating buffers... [0.047s] Loading trace points... [0.065s] Sorting trace points... [1.404s] Computing alignments... [41.613s] Deallocating buffers... [0.059s] Loading trace points... [0s] Sorting trace points... [1.322s] Computing alignments... [43.181s] Deallocating buffers... [0.046s] Loading trace points... [0s] [705.657s] Deallocating reference... [0.105s] Loading reference sequences... [30.059s] Masking reference... [31.649s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.008s] Building reference histograms... [32.572s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.64s] Building query seed array... [2.077s] Computing hash join... [5.57s] Masking low complexity seeds... [0.233s] Searching alignments... [274.316s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.392s] Building query seed array... [2.421s] Computing hash join... [5.612s] Masking low complexity seeds... [0.234s] Searching alignments... [115.24s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.252s] Building query seed array... [2.488s] Computing hash join... [5.14s] Masking low complexity seeds... [0.243s] Searching alignments... [91.252s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.211s] Building query seed array... [2.033s] Computing hash join... [5.343s] Masking low complexity seeds... [0.224s] Searching alignments... [87.302s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.462s] Building query seed array... [1.93s] Computing hash join... [5.238s] Masking low complexity seeds... [0.217s] Searching alignments... [127.499s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.259s] Building query seed array... [2.116s] Computing hash join... [5.336s] Masking low complexity seeds... [0.214s] Searching alignments... [102.304s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.869s] Building query seed array... [2.236s] Computing hash join... [5.341s] Masking low complexity seeds... [0.219s] Searching alignments... [78.261s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.935s] Building query seed array... [1.869s] Computing hash join... [5.332s] Masking low complexity seeds... [0.222s] Searching alignments... [79.915s] Deallocating memory... [0s] Deallocating buffers... [0.204s] Clearing query masking... [1.429s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.212s] Sorting trace points... [1.289s] Computing alignments... [41.427s] Deallocating buffers... [0.026s] Loading trace points... [0.6s] Sorting trace points... [1.363s] Computing alignments... [41.027s] Deallocating buffers... [0.044s] Loading trace points... [0.099s] Sorting trace points... [1.319s] Computing alignments... [40.968s] Deallocating buffers... [0.024s] Loading trace points... [0.101s] Sorting trace points... [1.25s] Computing alignments... [41.316s] Deallocating buffers... [0.025s] Loading trace points... [0.083s] Sorting trace points... [1.168s] Computing alignments... [39.048s] Deallocating buffers... [0.026s] Loading trace points... [0.046s] Sorting trace points... [1.255s] Computing alignments... [38.961s] Deallocating buffers... [0.023s] Loading trace points... [0.055s] Sorting trace points... [1.264s] Computing alignments... [40.669s] Deallocating buffers... [0.027s] Loading trace points... [0.109s] Sorting trace points... [1.373s] Computing alignments... [41.375s] Deallocating buffers... [0.022s] Loading trace points... [0.085s] Sorting trace points... [1.11s] Computing alignments... [40.433s] Deallocating buffers... [0.031s] Loading trace points... [0.098s] Sorting trace points... [1.176s] Computing alignments... [40.991s] Deallocating buffers... [0.03s] Loading trace points... [0.055s] Sorting trace points... [1.058s] Computing alignments... [41.645s] Deallocating buffers... [0.018s] Loading trace points... [0.43s] Sorting trace points... [1.186s] Computing alignments... [42.564s] Deallocating buffers... [0.02s] Loading trace points... [0.057s] Sorting trace points... [1.289s] Computing alignments... [41.985s] Deallocating buffers... [0.031s] Loading trace points... [0.093s] Sorting trace points... [1.133s] Computing alignments... [40.884s] Deallocating buffers... [0.032s] Loading trace points... [0.059s] Sorting trace points... [1.172s] Computing alignments... [40.126s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.324s] Computing alignments... [41.899s] Deallocating buffers... [0.024s] Loading trace points... [0s] [684.859s] Deallocating reference... [0.085s] Loading reference sequences... [29.113s] Masking reference... [30.871s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.621s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.335s] Building query seed array... [2.161s] Computing hash join... [5.661s] Masking low complexity seeds... [0.234s] Searching alignments... [281.877s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.012s] Building query seed array... [2.834s] Computing hash join... [5.019s] Masking low complexity seeds... [0.233s] Searching alignments... [114.83s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.977s] Building query seed array... [2.735s] Computing hash join... [4.958s] Masking low complexity seeds... [0.226s] Searching alignments... [91.923s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.26s] Building query seed array... [2.279s] Computing hash join... [5.702s] Masking low complexity seeds... [0.268s] Searching alignments... [87.142s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.463s] Building query seed array... [1.979s] Computing hash join... [4.962s] Masking low complexity seeds... [0.22s] Searching alignments... [124.949s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.146s] Building query seed array... [2.371s] Computing hash join... [5.519s] Masking low complexity seeds... [0.235s] Searching alignments... [100.267s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.152s] Building query seed array... [2.422s] Computing hash join... [5.497s] Masking low complexity seeds... [0.233s] Searching alignments... [79.586s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.923s] Building query seed array... [2.138s] Computing hash join... [4.976s] Masking low complexity seeds... [0.223s] Searching alignments... [79.549s] Deallocating memory... [0s] Deallocating buffers... [0.84s] Clearing query masking... [1.475s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.075s] Sorting trace points... [1.361s] Computing alignments... [42.182s] Deallocating buffers... [0.017s] Loading trace points... [0.046s] Sorting trace points... [1.392s] Computing alignments... [41.775s] Deallocating buffers... [0.035s] Loading trace points... [0.065s] Sorting trace points... [1.28s] Computing alignments... [41.121s] Deallocating buffers... [0.031s] Loading trace points... [0.085s] Sorting trace points... [1.042s] Computing alignments... [41.459s] Deallocating buffers... [0.037s] Loading trace points... [0.069s] Sorting trace points... [1.24s] Computing alignments... [39.388s] Deallocating buffers... [0.023s] Loading trace points... [0.041s] Sorting trace points... [1.283s] Computing alignments... [39.364s] Deallocating buffers... [0.026s] Loading trace points... [0.064s] Sorting trace points... [1.279s] Computing alignments... [41.131s] Deallocating buffers... [0.024s] Loading trace points... [0.058s] Sorting trace points... [1.157s] Computing alignments... [41.82s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.157s] Computing alignments... [40.927s] Deallocating buffers... [0.029s] Loading trace points... [0.073s] Sorting trace points... [1.151s] Computing alignments... [41.584s] Deallocating buffers... [0.028s] Loading trace points... [0.83s] Sorting trace points... [1.268s] Computing alignments... [41.801s] Deallocating buffers... [0.027s] Loading trace points... [0.092s] Sorting trace points... [1.256s] Computing alignments... [42.887s] Deallocating buffers... [0.032s] Loading trace points... [0.06s] Sorting trace points... [1.252s] Computing alignments... [42.237s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.033s] Computing alignments... [40.743s] Deallocating buffers... [0.03s] Loading trace points... [0.081s] Sorting trace points... [0.971s] Computing alignments... [40.364s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.096s] Computing alignments... [42.209s] Deallocating buffers... [0.025s] Loading trace points... [0s] [689.464s] Deallocating reference... [0.095s] Loading reference sequences... [30.85s] Masking reference... [30.894s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.775s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.106s] Building query seed array... [2.09s] Computing hash join... [5.571s] Masking low complexity seeds... [0.235s] Searching alignments... [274.999s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.488s] Building query seed array... [2.903s] Computing hash join... [5.467s] Masking low complexity seeds... [0.24s] Searching alignments... [114.253s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.926s] Building query seed array... [2.707s] Computing hash join... [5.075s] Masking low complexity seeds... [0.234s] Searching alignments... [92.505s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.176s] Building query seed array... [2.294s] Computing hash join... [5.733s] Masking low complexity seeds... [0.229s] Searching alignments... [86.653s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.343s] Building query seed array... [1.982s] Computing hash join... [5.561s] Masking low complexity seeds... [0.241s] Searching alignments... [127.742s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.936s] Building query seed array... [2.348s] Computing hash join... [4.988s] Masking low complexity seeds... [0.217s] Searching alignments... [101.233s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.532s] Building query seed array... [2.418s] Computing hash join... [5.266s] Masking low complexity seeds... [0.233s] Searching alignments... [79.869s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.294s] Building query seed array... [2.165s] Computing hash join... [5.332s] Masking low complexity seeds... [0.237s] Searching alignments... [81.312s] Deallocating memory... [0s] Deallocating buffers... [0.916s] Clearing query masking... [1.375s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.347s] Sorting trace points... [1.325s] Computing alignments... [40.526s] Deallocating buffers... [0.026s] Loading trace points... [0.047s] Sorting trace points... [1.31s] Computing alignments... [40.061s] Deallocating buffers... [0.033s] Loading trace points... [0.609s] Sorting trace points... [1.422s] Computing alignments... [39.488s] Deallocating buffers... [0.016s] Loading trace points... [0.077s] Sorting trace points... [1.255s] Computing alignments... [40.222s] Deallocating buffers... [0.036s] Loading trace points... [0.094s] Sorting trace points... [1.304s] Computing alignments... [37.699s] Deallocating buffers... [0.019s] Loading trace points... [0.001s] Sorting trace points... [1.222s] Computing alignments... [37.601s] Deallocating buffers... [0.023s] Loading trace points... [0.049s] Sorting trace points... [1.288s] Computing alignments... [39.237s] Deallocating buffers... [0.023s] Loading trace points... [0.078s] Sorting trace points... [1.285s] Computing alignments... [40.049s] Deallocating buffers... [0.021s] Loading trace points... [0.061s] Sorting trace points... [1.271s] Computing alignments... [38.685s] Deallocating buffers... [0.027s] Loading trace points... [0.084s] Sorting trace points... [1.332s] Computing alignments... [39.961s] Deallocating buffers... [0.03s] Loading trace points... [0.046s] Sorting trace points... [1.093s] Computing alignments... [40.302s] Deallocating buffers... [0.026s] Loading trace points... [0.088s] Sorting trace points... [1.371s] Computing alignments... [40.052s] Deallocating buffers... [0.025s] Loading trace points... [0.06s] Sorting trace points... [1.237s] Computing alignments... [40.385s] Deallocating buffers... [0.031s] Loading trace points... [0.094s] Sorting trace points... [1.205s] Computing alignments... [39.048s] Deallocating buffers... [0.026s] Loading trace points... [0.054s] Sorting trace points... [1.323s] Computing alignments... [38.706s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.335s] Computing alignments... [40.242s] Deallocating buffers... [0.038s] Loading trace points... [0s] [662.244s] Deallocating reference... [0.075s] Loading reference sequences... [31.433s] Masking reference... [31.664s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.666s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.756s] Building query seed array... [2.099s] Computing hash join... [5.657s] Masking low complexity seeds... [0.238s] Searching alignments... [278.308s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.72s] Building query seed array... [2.532s] Computing hash join... [5.783s] Masking low complexity seeds... [0.234s] Searching alignments... [115.725s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.134s] Building query seed array... [2.593s] Computing hash join... [5.814s] Masking low complexity seeds... [0.234s] Searching alignments... [92.169s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.396s] Building query seed array... [2.173s] Computing hash join... [5.588s] Masking low complexity seeds... [0.227s] Searching alignments... [87.244s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.946s] Building query seed array... [1.965s] Computing hash join... [5.528s] Masking low complexity seeds... [0.213s] Searching alignments... [129.959s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.104s] Building query seed array... [2.208s] Computing hash join... [5.528s] Masking low complexity seeds... [0.215s] Searching alignments... [102.958s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.986s] Building query seed array... [2.296s] Computing hash join... [5.56s] Masking low complexity seeds... [0.219s] Searching alignments... [80.489s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.158s] Building query seed array... [1.989s] Computing hash join... [5.666s] Masking low complexity seeds... [0.226s] Searching alignments... [80.288s] Deallocating memory... [0s] Deallocating buffers... [0.377s] Clearing query masking... [1.418s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.163s] Sorting trace points... [1.388s] Computing alignments... [41.504s] Deallocating buffers... [0.05s] Loading trace points... [0.06s] Sorting trace points... [1.145s] Computing alignments... [40.91s] Deallocating buffers... [0.047s] Loading trace points... [0.063s] Sorting trace points... [0.999s] Computing alignments... [40.935s] Deallocating buffers... [0.055s] Loading trace points... [0.069s] Sorting trace points... [1.127s] Computing alignments... [40.969s] Deallocating buffers... [0.048s] Loading trace points... [0.064s] Sorting trace points... [1.181s] Computing alignments... [38.188s] Deallocating buffers... [0.044s] Loading trace points... [0.113s] Sorting trace points... [1.033s] Computing alignments... [37.862s] Deallocating buffers... [0.038s] Loading trace points... [0.044s] Sorting trace points... [1.341s] Computing alignments... [39.696s] Deallocating buffers... [0.05s] Loading trace points... [0.067s] Sorting trace points... [1.363s] Computing alignments... [41.117s] Deallocating buffers... [0.043s] Loading trace points... [0.097s] Sorting trace points... [1.071s] Computing alignments... [39.67s] Deallocating buffers... [0.043s] Loading trace points... [0.07s] Sorting trace points... [1.175s] Computing alignments... [40.592s] Deallocating buffers... [0.043s] Loading trace points... [0.047s] Sorting trace points... [1.334s] Computing alignments... [41.403s] Deallocating buffers... [0.037s] Loading trace points... [0.083s] Sorting trace points... [1.409s] Computing alignments... [41.013s] Deallocating buffers... [0.047s] Loading trace points... [0.058s] Sorting trace points... [0.995s] Computing alignments... [41.848s] Deallocating buffers... [0.045s] Loading trace points... [0.086s] Sorting trace points... [1.085s] Computing alignments... [39.732s] Deallocating buffers... [0.032s] Loading trace points... [0.062s] Sorting trace points... [1.156s] Computing alignments... [39.511s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [1.192s] Computing alignments... [41.161s] Deallocating buffers... [0.048s] Loading trace points... [0s] [674.1s] Deallocating reference... [0.106s] Loading reference sequences... [29.107s] Masking reference... [30.879s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.579s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.099s] Building query seed array... [2.045s] Computing hash join... [5.993s] Masking low complexity seeds... [0.229s] Searching alignments... [278.698s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.798s] Building query seed array... [2.63s] Computing hash join... [5.674s] Masking low complexity seeds... [0.227s] Searching alignments... [114.092s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.954s] Building query seed array... [2.588s] Computing hash join... [5.228s] Masking low complexity seeds... [0.235s] Searching alignments... [89.222s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.682s] Building query seed array... [2.172s] Computing hash join... [5.177s] Masking low complexity seeds... [0.229s] Searching alignments... [86.296s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.496s] Building query seed array... [2.096s] Computing hash join... [4.994s] Masking low complexity seeds... [0.248s] Searching alignments... [124.038s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.771s] Building query seed array... [2.281s] Computing hash join... [4.95s] Masking low complexity seeds... [0.221s] Searching alignments... [101.753s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.554s] Building query seed array... [2.399s] Computing hash join... [5.127s] Masking low complexity seeds... [0.206s] Searching alignments... [81.336s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.455s] Building query seed array... [2.041s] Computing hash join... [5.373s] Masking low complexity seeds... [0.244s] Searching alignments... [82.334s] Deallocating memory... [0s] Deallocating buffers... [1.448s] Clearing query masking... [1.379s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.691s] Sorting trace points... [1.2s] Computing alignments... [36.923s] Deallocating buffers... [0.027s] Loading trace points... [0.074s] Sorting trace points... [1.346s] Computing alignments... [37.641s] Deallocating buffers... [0.028s] Loading trace points... [0.062s] Sorting trace points... [1.143s] Computing alignments... [36.572s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [1.324s] Computing alignments... [37.694s] Deallocating buffers... [0.027s] Loading trace points... [0.652s] Sorting trace points... [1.288s] Computing alignments... [35.357s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.22s] Computing alignments... [35.207s] Deallocating buffers... [0.019s] Loading trace points... [0.051s] Sorting trace points... [1.187s] Computing alignments... [36.601s] Deallocating buffers... [0.026s] Loading trace points... [0.082s] Sorting trace points... [1.104s] Computing alignments... [37.296s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.264s] Computing alignments... [36.335s] Deallocating buffers... [0.023s] Loading trace points... [0.078s] Sorting trace points... [1.103s] Computing alignments... [37.188s] Deallocating buffers... [0.027s] Loading trace points... [0.043s] Sorting trace points... [1.313s] Computing alignments... [37.63s] Deallocating buffers... [0.024s] Loading trace points... [0.056s] Sorting trace points... [1.348s] Computing alignments... [37.648s] Deallocating buffers... [0.028s] Loading trace points... [0.058s] Sorting trace points... [1.259s] Computing alignments... [37.119s] Deallocating buffers... [0.031s] Loading trace points... [0.075s] Sorting trace points... [1.26s] Computing alignments... [36.772s] Deallocating buffers... [0.033s] Loading trace points... [0.053s] Sorting trace points... [1.329s] Computing alignments... [36.043s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.313s] Computing alignments... [37.372s] Deallocating buffers... [0.024s] Loading trace points... [0s] [619.046s] Deallocating reference... [0.076s] Loading reference sequences... [29.27s] Masking reference... [32.165s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.145s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.167s] Building query seed array... [2.166s] Computing hash join... [5.652s] Masking low complexity seeds... [0.235s] Searching alignments... [277.609s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.602s] Building query seed array... [2.761s] Computing hash join... [5.559s] Masking low complexity seeds... [0.233s] Searching alignments... [115.017s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.802s] Building query seed array... [2.71s] Computing hash join... [5.788s] Masking low complexity seeds... [0.25s] Searching alignments... [92.811s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.225s] Building query seed array... [2.305s] Computing hash join... [5.458s] Masking low complexity seeds... [0.237s] Searching alignments... [86.845s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.307s] Building query seed array... [2.02s] Computing hash join... [5.453s] Masking low complexity seeds... [0.223s] Searching alignments... [129.053s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.359s] Building query seed array... [2.405s] Computing hash join... [5.357s] Masking low complexity seeds... [0.22s] Searching alignments... [102.75s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.644s] Building query seed array... [2.468s] Computing hash join... [5.551s] Masking low complexity seeds... [0.222s] Searching alignments... [80.056s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.923s] Building query seed array... [2.058s] Computing hash join... [5.442s] Masking low complexity seeds... [0.218s] Searching alignments... [82.301s] Deallocating memory... [0s] Deallocating buffers... [0.993s] Clearing query masking... [1.453s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.083s] Sorting trace points... [1.33s] Computing alignments... [44.245s] Deallocating buffers... [0.047s] Loading trace points... [0.061s] Sorting trace points... [1.093s] Computing alignments... [43.284s] Deallocating buffers... [0.056s] Loading trace points... [0.087s] Sorting trace points... [1.135s] Computing alignments... [43.042s] Deallocating buffers... [0.056s] Loading trace points... [0.107s] Sorting trace points... [1.3s] Computing alignments... [43.563s] Deallocating buffers... [0.047s] Loading trace points... [0.115s] Sorting trace points... [1.067s] Computing alignments... [40.823s] Deallocating buffers... [0.036s] Loading trace points... [0.041s] Sorting trace points... [0.971s] Computing alignments... [41.02s] Deallocating buffers... [0.044s] Loading trace points... [0.057s] Sorting trace points... [1.057s] Computing alignments... [42.933s] Deallocating buffers... [0.041s] Loading trace points... [0.045s] Sorting trace points... [1.192s] Computing alignments... [43.672s] Deallocating buffers... [0.044s] Loading trace points... [0.65s] Sorting trace points... [1.283s] Computing alignments... [42.574s] Deallocating buffers... [0.045s] Loading trace points... [0.042s] Sorting trace points... [1.355s] Computing alignments... [42.97s] Deallocating buffers... [0.046s] Loading trace points... [0.059s] Sorting trace points... [1.37s] Computing alignments... [43.757s] Deallocating buffers... [0.048s] Loading trace points... [0.066s] Sorting trace points... [1.449s] Computing alignments... [44.377s] Deallocating buffers... [0.045s] Loading trace points... [0.611s] Sorting trace points... [1.061s] Computing alignments... [44.478s] Deallocating buffers... [0.043s] Loading trace points... [0.04s] Sorting trace points... [1.345s] Computing alignments... [42.144s] Deallocating buffers... [0.044s] Loading trace points... [0.073s] Sorting trace points... [1.009s] Computing alignments... [41.952s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.209s] Computing alignments... [43.797s] Deallocating buffers... [0.037s] Loading trace points... [0s] [718.483s] Deallocating reference... [0.063s] Loading reference sequences... [253.862s] Masking reference... [31.273s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.879s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.235s] Building query seed array... [2.131s] Computing hash join... [5.526s] Masking low complexity seeds... [0.244s] Searching alignments... [279.438s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.036s] Building query seed array... [2.593s] Computing hash join... [5.807s] Masking low complexity seeds... [0.239s] Searching alignments... [114.543s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.417s] Building query seed array... [2.696s] Computing hash join... [5.578s] Masking low complexity seeds... [0.25s] Searching alignments... [91.537s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.021s] Building query seed array... [2.219s] Computing hash join... [5.188s] Masking low complexity seeds... [0.247s] Searching alignments... [87.632s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.13s] Building query seed array... [2.053s] Computing hash join... [5.22s] Masking low complexity seeds... [0.223s] Searching alignments... [125.32s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.293s] Building query seed array... [2.352s] Computing hash join... [5.088s] Masking low complexity seeds... [0.218s] Searching alignments... [104.32s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.148s] Building query seed array... [2.378s] Computing hash join... [5.208s] Masking low complexity seeds... [0.211s] Searching alignments... [79.098s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.966s] Building query seed array... [2.07s] Computing hash join... [5.123s] Masking low complexity seeds... [0.226s] Searching alignments... [79.599s] Deallocating memory... [0.017s] Deallocating buffers... [0.706s] Clearing query masking... [1.463s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.951s] Sorting trace points... [1.148s] Computing alignments... [43.074s] Deallocating buffers... [0.063s] Loading trace points... [0.058s] Sorting trace points... [1.027s] Computing alignments... [42.778s] Deallocating buffers... [0.059s] Loading trace points... [0.092s] Sorting trace points... [1.07s] Computing alignments... [42.11s] Deallocating buffers... [0.049s] Loading trace points... [0.058s] Sorting trace points... [1.343s] Computing alignments... [42.85s] Deallocating buffers... [0.036s] Loading trace points... [0.064s] Sorting trace points... [1.304s] Computing alignments... [39.977s] Deallocating buffers... [0.039s] Loading trace points... [0.06s] Sorting trace points... [1.273s] Computing alignments... [39.862s] Deallocating buffers... [0.053s] Loading trace points... [0.088s] Sorting trace points... [1.349s] Computing alignments... [41.62s] Deallocating buffers... [0.058s] Loading trace points... [0.059s] Sorting trace points... [1.399s] Computing alignments... [42.754s] Deallocating buffers... [0.053s] Loading trace points... [0.083s] Sorting trace points... [1.11s] Computing alignments... [41.425s] Deallocating buffers... [0.044s] Loading trace points... [0.062s] Sorting trace points... [1.338s] Computing alignments... [42.207s] Deallocating buffers... [0.04s] Loading trace points... [0.066s] Sorting trace points... [1.031s] Computing alignments... [43.017s] Deallocating buffers... [0.05s] Loading trace points... [0.093s] Sorting trace points... [2.197s] Computing alignments... [43.628s] Deallocating buffers... [0.057s] Loading trace points... [0.086s] Sorting trace points... [1.331s] Computing alignments... [43.954s] Deallocating buffers... [0.052s] Loading trace points... [0.045s] Sorting trace points... [1.269s] Computing alignments... [41.567s] Deallocating buffers... [0.03s] Loading trace points... [0.071s] Sorting trace points... [1.233s] Computing alignments... [41.806s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [1.159s] Computing alignments... [42.976s] Deallocating buffers... [0.049s] Loading trace points... [0s] [706.022s] Deallocating reference... [0.089s] Loading reference sequences... [30.48s] Masking reference... [31.131s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.677s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.998s] Building query seed array... [2.083s] Computing hash join... [5.519s] Masking low complexity seeds... [0.236s] Searching alignments... [281.526s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.101s] Building query seed array... [2.718s] Computing hash join... [5.398s] Masking low complexity seeds... [0.229s] Searching alignments... [114.366s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.292s] Building query seed array... [2.571s] Computing hash join... [5.456s] Masking low complexity seeds... [0.232s] Searching alignments... [92.749s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.028s] Building query seed array... [2.193s] Computing hash join... [5.516s] Masking low complexity seeds... [0.236s] Searching alignments... [85.636s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.06s] Building query seed array... [2.121s] Computing hash join... [5.32s] Masking low complexity seeds... [0.219s] Searching alignments... [126.401s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.365s] Building query seed array... [2.326s] Computing hash join... [4.953s] Masking low complexity seeds... [0.221s] Searching alignments... [105.864s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.241s] Building query seed array... [2.421s] Computing hash join... [4.976s] Masking low complexity seeds... [0.216s] Searching alignments... [79.366s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.959s] Building query seed array... [2.151s] Computing hash join... [5.005s] Masking low complexity seeds... [0.206s] Searching alignments... [80.954s] Deallocating memory... [0s] Deallocating buffers... [0.754s] Clearing query masking... [1.466s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.062s] Sorting trace points... [1.348s] Computing alignments... [40.481s] Deallocating buffers... [0.023s] Loading trace points... [0.046s] Sorting trace points... [1.306s] Computing alignments... [40.691s] Deallocating buffers... [0.029s] Loading trace points... [0.084s] Sorting trace points... [1.292s] Computing alignments... [39.71s] Deallocating buffers... [0.029s] Loading trace points... [0.096s] Sorting trace points... [1.372s] Computing alignments... [40.701s] Deallocating buffers... [0.024s] Loading trace points... [0.08s] Sorting trace points... [1.299s] Computing alignments... [38.113s] Deallocating buffers... [0.023s] Loading trace points... [0.057s] Sorting trace points... [1.3s] Computing alignments... [38.509s] Deallocating buffers... [0.027s] Loading trace points... [0.055s] Sorting trace points... [1.261s] Computing alignments... [39.555s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.315s] Computing alignments... [40.247s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.264s] Computing alignments... [38.945s] Deallocating buffers... [0.03s] Loading trace points... [0.095s] Sorting trace points... [1.116s] Computing alignments... [40.118s] Deallocating buffers... [0.027s] Loading trace points... [0.049s] Sorting trace points... [1.045s] Computing alignments... [40.688s] Deallocating buffers... [0.018s] Loading trace points... [0.067s] Sorting trace points... [1.366s] Computing alignments... [40.781s] Deallocating buffers... [0.024s] Loading trace points... [0.077s] Sorting trace points... [1.064s] Computing alignments... [40.788s] Deallocating buffers... [0.025s] Loading trace points... [0.089s] Sorting trace points... [1.309s] Computing alignments... [39.472s] Deallocating buffers... [0.029s] Loading trace points... [0.059s] Sorting trace points... [1.317s] Computing alignments... [38.983s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.35s] Computing alignments... [40s] Deallocating buffers... [0.024s] Loading trace points... [0s] [666.507s] Deallocating reference... [0.07s] Loading reference sequences... [27.294s] Masking reference... [26.098s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [25.963s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.503s] Building query seed array... [2.13s] Computing hash join... [4.541s] Masking low complexity seeds... [0.223s] Searching alignments... [221.708s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.11s] Building query seed array... [2.773s] Computing hash join... [4.168s] Masking low complexity seeds... [0.208s] Searching alignments... [90.827s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.01s] Building query seed array... [2.53s] Computing hash join... [4.148s] Masking low complexity seeds... [0.212s] Searching alignments... [73.526s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [7.963s] Building query seed array... [2.179s] Computing hash join... [4.197s] Masking low complexity seeds... [0.216s] Searching alignments... [70.586s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.162s] Building query seed array... [2.04s] Computing hash join... [3.984s] Masking low complexity seeds... [0.2s] Searching alignments... [103.91s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.213s] Building query seed array... [2.305s] Computing hash join... [4.02s] Masking low complexity seeds... [0.204s] Searching alignments... [83.676s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.901s] Building query seed array... [2.348s] Computing hash join... [4.011s] Masking low complexity seeds... [0.202s] Searching alignments... [64.875s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.99s] Building query seed array... [2.065s] Computing hash join... [4.064s] Masking low complexity seeds... [0.212s] Searching alignments... [66.395s] Deallocating memory... [0s] Deallocating buffers... [0.455s] Clearing query masking... [1.43s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.864s] Sorting trace points... [1.087s] Computing alignments... [31.777s] Deallocating buffers... [0.021s] Loading trace points... [0.083s] Sorting trace points... [1.089s] Computing alignments... [31.742s] Deallocating buffers... [0.019s] Loading trace points... [0.072s] Sorting trace points... [0.827s] Computing alignments... [31.539s] Deallocating buffers... [0.022s] Loading trace points... [0.066s] Sorting trace points... [1.097s] Computing alignments... [31.741s] Deallocating buffers... [0.02s] Loading trace points... [0.067s] Sorting trace points... [1.011s] Computing alignments... [29.605s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.009s] Computing alignments... [29.861s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.068s] Computing alignments... [31.232s] Deallocating buffers... [0.022s] Loading trace points... [0.074s] Sorting trace points... [0.825s] Computing alignments... [31.72s] Deallocating buffers... [0.021s] Loading trace points... [0.001s] Sorting trace points... [0.875s] Computing alignments... [30.712s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [0.862s] Computing alignments... [31.591s] Deallocating buffers... [0.022s] Loading trace points... [0.002s] Sorting trace points... [0.938s] Computing alignments... [31.956s] Deallocating buffers... [0.021s] Loading trace points... [0.093s] Sorting trace points... [1.125s] Computing alignments... [31.956s] Deallocating buffers... [0.018s] Loading trace points... [0.055s] Sorting trace points... [1.043s] Computing alignments... [31.994s] Deallocating buffers... [0.02s] Loading trace points... [0.051s] Sorting trace points... [0.914s] Computing alignments... [30.988s] Deallocating buffers... [0.02s] Loading trace points... [0.077s] Sorting trace points... [1.036s] Computing alignments... [30.72s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.054s] Computing alignments... [31.923s] Deallocating buffers... [0.023s] Loading trace points... [0s] [524.057s] Deallocating reference... [0.072s] Loading reference sequences... [0.098s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2545.04s] [2545.04s] Deallocating queries... [0.064s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.45s] [4.409s] Closing the database... [0s] Cleaning up... [0s] Total time = 29055.6s Reported 2347131641 pairwise alignments, 2347131641 HSPs. 5022039 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-22.trimmed.R1.fastq.gz complete: CH01-22.trimmed.R1.blastx.meganized.daa Now MEGANizing CH01-22.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH01-22.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (415.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.4s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,716.2s) Total reads: 5,022,039 With hits: 5,022,039 Alignments: 1,722,192,756 Assig. Taxonomy: 2,459,948 Assig. SEED: 131,153 Assig. EGGNOG: 49,595 Assig. GTDB: 305,580 Assig. EC: 419,822 Assig. INTERPRO2GO: 1,101,752 MinSupport set to: 2511 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 7,197 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (15.0s) Min-supp. changes: 5,722 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.8s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 207 Class. SEED: 536 Class. EGGNOG: 1,855 Class. GTDB: 73 Class. EC: 2,588 Class. INTERPRO2GO: 8,961 Total time: 4,165s Peak memory: 37 of 195.3G MEGANization of CH01-22.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-22.trimmed.R2.fastq.gz... 5f90d8ed008278f6d74d118ad913c57f /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-22.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-22.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.313s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.717s] Opening the output file... [0s] Loading query sequences... [87.518s] Masking queries... [24.893s] Algorithm: Double-indexed Building query histograms... [18.734s] Loading reference sequences... [28.988s] Masking reference... [32.115s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.043s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.241s] Building query seed array... [2.109s] Computing hash join... [5.767s] Masking low complexity seeds... [0.235s] Searching alignments... [291.759s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.498s] Building query seed array... [2.74s] Computing hash join... [5.142s] Masking low complexity seeds... [0.269s] Searching alignments... [117.39s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.626s] Building query seed array... [2.633s] Computing hash join... [5.555s] Masking low complexity seeds... [0.232s] Searching alignments... [95.552s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.011s] Building query seed array... [2.31s] Computing hash join... [5.012s] Masking low complexity seeds... [0.231s] Searching alignments... [90.891s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.138s] Building query seed array... [2.177s] Computing hash join... [5.334s] Masking low complexity seeds... [0.209s] Searching alignments... [133.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.186s] Building query seed array... [2.295s] Computing hash join... [5.048s] Masking low complexity seeds... [0.211s] Searching alignments... [107.239s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.357s] Building query seed array... [2.433s] Computing hash join... [5.05s] Masking low complexity seeds... [0.217s] Searching alignments... [79.813s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.558s] Building query seed array... [2.113s] Computing hash join... [5.39s] Masking low complexity seeds... [0.205s] Searching alignments... [84.17s] Deallocating memory... [0s] Deallocating buffers... [0.764s] Clearing query masking... [1.4s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.261s] Sorting trace points... [1.367s] Computing alignments... [39.093s] Deallocating buffers... [0.018s] Loading trace points... [0.054s] Sorting trace points... [0.971s] Computing alignments... [40.557s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.324s] Computing alignments... [39.896s] Deallocating buffers... [0.024s] Loading trace points... [0.051s] Sorting trace points... [1.121s] Computing alignments... [38.966s] Deallocating buffers... [0.027s] Loading trace points... [0.093s] Sorting trace points... [1.336s] Computing alignments... [38.551s] Deallocating buffers... [0.022s] Loading trace points... [0.041s] Sorting trace points... [1.327s] Computing alignments... [38.303s] Deallocating buffers... [0.023s] Loading trace points... [0.076s] Sorting trace points... [1.419s] Computing alignments... [38.983s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [0.986s] Computing alignments... [38.874s] Deallocating buffers... [0.027s] Loading trace points... [0.048s] Sorting trace points... [1.325s] Computing alignments... [38.777s] Deallocating buffers... [0.019s] Loading trace points... [0.053s] Sorting trace points... [1.14s] Computing alignments... [39.172s] Deallocating buffers... [0.019s] Loading trace points... [0.052s] Sorting trace points... [1.376s] Computing alignments... [39.234s] Deallocating buffers... [0.033s] Loading trace points... [0.001s] Sorting trace points... [1.409s] Computing alignments... [40.392s] Deallocating buffers... [0.024s] Loading trace points... [0.085s] Sorting trace points... [1.27s] Computing alignments... [38.013s] Deallocating buffers... [0.016s] Loading trace points... [0.041s] Sorting trace points... [1.311s] Computing alignments... [39.217s] Deallocating buffers... [0.027s] Loading trace points... [0.089s] Sorting trace points... [1.016s] Computing alignments... [38.38s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.297s] Computing alignments... [38.328s] Deallocating buffers... [0.023s] Loading trace points... [0s] [653.208s] Deallocating reference... [0.068s] Loading reference sequences... [33.08s] Masking reference... [31.593s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.431s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.49s] Building query seed array... [2.138s] Computing hash join... [5.319s] Masking low complexity seeds... [0.223s] Searching alignments... [283.612s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.497s] Building query seed array... [2.639s] Computing hash join... [5.52s] Masking low complexity seeds... [0.226s] Searching alignments... [115.458s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.995s] Building query seed array... [2.564s] Computing hash join... [5.391s] Masking low complexity seeds... [0.247s] Searching alignments... [91.339s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.903s] Building query seed array... [2.168s] Computing hash join... [4.961s] Masking low complexity seeds... [0.234s] Searching alignments... [88.935s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.084s] Building query seed array... [1.947s] Computing hash join... [5.364s] Masking low complexity seeds... [0.215s] Searching alignments... [128.488s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.675s] Building query seed array... [2.277s] Computing hash join... [4.914s] Masking low complexity seeds... [0.205s] Searching alignments... [105.649s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.452s] Building query seed array... [2.437s] Computing hash join... [4.769s] Masking low complexity seeds... [0.21s] Searching alignments... [80.054s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.003s] Building query seed array... [2.005s] Computing hash join... [5.423s] Masking low complexity seeds... [0.213s] Searching alignments... [80.787s] Deallocating memory... [0s] Deallocating buffers... [0.429s] Clearing query masking... [1.454s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.19s] Sorting trace points... [1.375s] Computing alignments... [40.335s] Deallocating buffers... [0.047s] Loading trace points... [0.046s] Sorting trace points... [0.976s] Computing alignments... [42.329s] Deallocating buffers... [0.04s] Loading trace points... [0.063s] Sorting trace points... [1.018s] Computing alignments... [41.93s] Deallocating buffers... [0.049s] Loading trace points... [0.072s] Sorting trace points... [1.061s] Computing alignments... [40.4s] Deallocating buffers... [0.051s] Loading trace points... [0.056s] Sorting trace points... [1.326s] Computing alignments... [39.636s] Deallocating buffers... [0.04s] Loading trace points... [0.073s] Sorting trace points... [1.351s] Computing alignments... [39.237s] Deallocating buffers... [0.038s] Loading trace points... [0.091s] Sorting trace points... [1.285s] Computing alignments... [39.935s] Deallocating buffers... [0.027s] Loading trace points... [0.079s] Sorting trace points... [1.103s] Computing alignments... [40.045s] Deallocating buffers... [0.042s] Loading trace points... [0.081s] Sorting trace points... [1.336s] Computing alignments... [39.401s] Deallocating buffers... [0.037s] Loading trace points... [0.047s] Sorting trace points... [1.326s] Computing alignments... [40.572s] Deallocating buffers... [0.037s] Loading trace points... [0.086s] Sorting trace points... [1.37s] Computing alignments... [40.178s] Deallocating buffers... [0.039s] Loading trace points... [0.069s] Sorting trace points... [1.089s] Computing alignments... [41.997s] Deallocating buffers... [0.037s] Loading trace points... [0.051s] Sorting trace points... [1.023s] Computing alignments... [38.332s] Deallocating buffers... [0.033s] Loading trace points... [0.052s] Sorting trace points... [1.329s] Computing alignments... [40.861s] Deallocating buffers... [0.037s] Loading trace points... [0.091s] Sorting trace points... [1.313s] Computing alignments... [40.189s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [0.991s] Computing alignments... [39.092s] Deallocating buffers... [0.031s] Loading trace points... [0s] [672.621s] Deallocating reference... [0.062s] Loading reference sequences... [29.096s] Masking reference... [30.851s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.674s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.444s] Building query seed array... [2.104s] Computing hash join... [5.444s] Masking low complexity seeds... [0.23s] Searching alignments... [284.605s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.211s] Building query seed array... [2.855s] Computing hash join... [5.789s] Masking low complexity seeds... [0.251s] Searching alignments... [118.359s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.223s] Building query seed array... [2.696s] Computing hash join... [5.432s] Masking low complexity seeds... [0.227s] Searching alignments... [94.461s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.167s] Building query seed array... [2.201s] Computing hash join... [5.274s] Masking low complexity seeds... [0.225s] Searching alignments... [88.937s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.887s] Building query seed array... [1.941s] Computing hash join... [5.208s] Masking low complexity seeds... [0.209s] Searching alignments... [129.044s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.156s] Building query seed array... [2.395s] Computing hash join... [4.948s] Masking low complexity seeds... [0.209s] Searching alignments... [107.337s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.771s] Building query seed array... [2.42s] Computing hash join... [4.974s] Masking low complexity seeds... [0.241s] Searching alignments... [79.355s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.924s] Building query seed array... [2.108s] Computing hash join... [4.819s] Masking low complexity seeds... [0.209s] Searching alignments... [82.94s] Deallocating memory... [0s] Deallocating buffers... [0.668s] Clearing query masking... [1.372s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.331s] Sorting trace points... [1.042s] Computing alignments... [40.458s] Deallocating buffers... [0.035s] Loading trace points... [0.047s] Sorting trace points... [1.025s] Computing alignments... [42.439s] Deallocating buffers... [0.042s] Loading trace points... [0.072s] Sorting trace points... [1.207s] Computing alignments... [41.554s] Deallocating buffers... [0.044s] Loading trace points... [0.057s] Sorting trace points... [1.341s] Computing alignments... [39.867s] Deallocating buffers... [0.031s] Loading trace points... [0.042s] Sorting trace points... [1.289s] Computing alignments... [39.709s] Deallocating buffers... [0.034s] Loading trace points... [0.071s] Sorting trace points... [1.291s] Computing alignments... [39.083s] Deallocating buffers... [0.04s] Loading trace points... [0.054s] Sorting trace points... [1.348s] Computing alignments... [39.829s] Deallocating buffers... [0.032s] Loading trace points... [0.057s] Sorting trace points... [1.277s] Computing alignments... [40.058s] Deallocating buffers... [0.034s] Loading trace points... [0.055s] Sorting trace points... [1.283s] Computing alignments... [39.584s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.035s] Computing alignments... [40.351s] Deallocating buffers... [0.041s] Loading trace points... [0.061s] Sorting trace points... [1.381s] Computing alignments... [40.28s] Deallocating buffers... [0.039s] Loading trace points... [0.087s] Sorting trace points... [1.081s] Computing alignments... [41.807s] Deallocating buffers... [0.044s] Loading trace points... [0.061s] Sorting trace points... [1.229s] Computing alignments... [38.432s] Deallocating buffers... [0.024s] Loading trace points... [0.057s] Sorting trace points... [1.311s] Computing alignments... [41.293s] Deallocating buffers... [0.028s] Loading trace points... [0.057s] Sorting trace points... [1.264s] Computing alignments... [40.289s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.273s] Computing alignments... [39.249s] Deallocating buffers... [0.036s] Loading trace points... [0s] [672.784s] Deallocating reference... [0.088s] Loading reference sequences... [29.358s] Masking reference... [30.843s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.086s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.301s] Building query seed array... [2.13s] Computing hash join... [5.468s] Masking low complexity seeds... [0.233s] Searching alignments... [288.332s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.508s] Building query seed array... [2.418s] Computing hash join... [5.452s] Masking low complexity seeds... [0.232s] Searching alignments... [116.993s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.783s] Building query seed array... [2.466s] Computing hash join... [5.523s] Masking low complexity seeds... [0.238s] Searching alignments... [94.61s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.209s] Building query seed array... [2.025s] Computing hash join... [5.435s] Masking low complexity seeds... [0.241s] Searching alignments... [89.211s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.008s] Building query seed array... [1.846s] Computing hash join... [4.976s] Masking low complexity seeds... [0.212s] Searching alignments... [131.016s] Deallocating memory... [0.002s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.539s] Building query seed array... [2.15s] Computing hash join... [5.336s] Masking low complexity seeds... [0.216s] Searching alignments... [108.043s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.439s] Building query seed array... [2.256s] Computing hash join... [5.147s] Masking low complexity seeds... [0.219s] Searching alignments... [79.965s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.975s] Building query seed array... [1.915s] Computing hash join... [5.005s] Masking low complexity seeds... [0.219s] Searching alignments... [83.111s] Deallocating memory... [0s] Deallocating buffers... [0.147s] Clearing query masking... [1.543s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.13s] Sorting trace points... [1.408s] Computing alignments... [39.478s] Deallocating buffers... [0.029s] Loading trace points... [0.062s] Sorting trace points... [1.07s] Computing alignments... [41.275s] Deallocating buffers... [0.026s] Loading trace points... [0.092s] Sorting trace points... [1.203s] Computing alignments... [40.887s] Deallocating buffers... [0.035s] Loading trace points... [0.001s] Sorting trace points... [1.124s] Computing alignments... [39.358s] Deallocating buffers... [0.03s] Loading trace points... [0.08s] Sorting trace points... [1.303s] Computing alignments... [38.945s] Deallocating buffers... [0.027s] Loading trace points... [0.001s] Sorting trace points... [1.326s] Computing alignments... [39.093s] Deallocating buffers... [0.03s] Loading trace points... [0.09s] Sorting trace points... [1.311s] Computing alignments... [39.464s] Deallocating buffers... [0.027s] Loading trace points... [0.046s] Sorting trace points... [1.263s] Computing alignments... [39.166s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.304s] Computing alignments... [38.856s] Deallocating buffers... [0.034s] Loading trace points... [0.062s] Sorting trace points... [1.037s] Computing alignments... [40.196s] Deallocating buffers... [0.03s] Loading trace points... [0.002s] Sorting trace points... [1.387s] Computing alignments... [39.731s] Deallocating buffers... [0.03s] Loading trace points... [0.075s] Sorting trace points... [1.404s] Computing alignments... [41.31s] Deallocating buffers... [0.034s] Loading trace points... [0.065s] Sorting trace points... [1.256s] Computing alignments... [37.925s] Deallocating buffers... [0.026s] Loading trace points... [0.065s] Sorting trace points... [1.301s] Computing alignments... [40.261s] Deallocating buffers... [0.033s] Loading trace points... [0.837s] Sorting trace points... [1.145s] Computing alignments... [39.523s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.106s] Computing alignments... [38.439s] Deallocating buffers... [0.027s] Loading trace points... [0s] [663.016s] Deallocating reference... [0.078s] Loading reference sequences... [250.414s] Masking reference... [31.041s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.108s] Building reference histograms... [32.864s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.111s] Building query seed array... [2.13s] Computing hash join... [5.955s] Masking low complexity seeds... [0.231s] Searching alignments... [289.973s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.78s] Building query seed array... [2.777s] Computing hash join... [5.843s] Masking low complexity seeds... [0.269s] Searching alignments... [116.744s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.904s] Building query seed array... [2.715s] Computing hash join... [4.916s] Masking low complexity seeds... [0.232s] Searching alignments... [93.818s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.138s] Building query seed array... [2.143s] Computing hash join... [5.116s] Masking low complexity seeds... [0.212s] Searching alignments... [88.279s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.998s] Building query seed array... [2.162s] Computing hash join... [5.091s] Masking low complexity seeds... [0.248s] Searching alignments... [128.376s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.068s] Building query seed array... [2.314s] Computing hash join... [4.818s] Masking low complexity seeds... [0.229s] Searching alignments... [107.421s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.078s] Building query seed array... [2.505s] Computing hash join... [4.895s] Masking low complexity seeds... [0.224s] Searching alignments... [80.037s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.444s] Building query seed array... [2.098s] Computing hash join... [4.896s] Masking low complexity seeds... [0.215s] Searching alignments... [82.732s] Deallocating memory... [0s] Deallocating buffers... [1.415s] Clearing query masking... [1.528s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.499s] Sorting trace points... [1.374s] Computing alignments... [42.191s] Deallocating buffers... [0.063s] Loading trace points... [0.058s] Sorting trace points... [1.337s] Computing alignments... [43.929s] Deallocating buffers... [0.069s] Loading trace points... [0.092s] Sorting trace points... [1.018s] Computing alignments... [43.285s] Deallocating buffers... [0.04s] Loading trace points... [0.103s] Sorting trace points... [1.36s] Computing alignments... [41.215s] Deallocating buffers... [0.06s] Loading trace points... [0.062s] Sorting trace points... [1.355s] Computing alignments... [41.282s] Deallocating buffers... [0.046s] Loading trace points... [0.085s] Sorting trace points... [1.053s] Computing alignments... [41.092s] Deallocating buffers... [0.047s] Loading trace points... [0.072s] Sorting trace points... [1.018s] Computing alignments... [41.22s] Deallocating buffers... [0.049s] Loading trace points... [0.001s] Sorting trace points... [0.994s] Computing alignments... [41.481s] Deallocating buffers... [0.054s] Loading trace points... [0.097s] Sorting trace points... [1.276s] Computing alignments... [40.916s] Deallocating buffers... [0.052s] Loading trace points... [0.049s] Sorting trace points... [1.046s] Computing alignments... [41.706s] Deallocating buffers... [0.045s] Loading trace points... [1.161s] Sorting trace points... [1.365s] Computing alignments... [42.203s] Deallocating buffers... [0.048s] Loading trace points... [0.064s] Sorting trace points... [1.046s] Computing alignments... [43.356s] Deallocating buffers... [0.05s] Loading trace points... [0.085s] Sorting trace points... [1.35s] Computing alignments... [39.919s] Deallocating buffers... [0.03s] Loading trace points... [0.074s] Sorting trace points... [1.285s] Computing alignments... [42.905s] Deallocating buffers... [0.052s] Loading trace points... [0.071s] Sorting trace points... [1.125s] Computing alignments... [41.54s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [1.099s] Computing alignments... [40.257s] Deallocating buffers... [0.047s] Loading trace points... [0s] [698.16s] Deallocating reference... [0.078s] Loading reference sequences... [253.454s] Masking reference... [30.887s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.302s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.283s] Building query seed array... [2.203s] Computing hash join... [5.501s] Masking low complexity seeds... [0.243s] Searching alignments... [286.337s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.594s] Building query seed array... [2.872s] Computing hash join... [5.357s] Masking low complexity seeds... [0.232s] Searching alignments... [116.528s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.465s] Building query seed array... [2.799s] Computing hash join... [5.29s] Masking low complexity seeds... [0.227s] Searching alignments... [92.403s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.119s] Building query seed array... [2.225s] Computing hash join... [4.934s] Masking low complexity seeds... [0.22s] Searching alignments... [89.444s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.22s] Building query seed array... [2.006s] Computing hash join... [4.884s] Masking low complexity seeds... [0.221s] Searching alignments... [131.614s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.288s] Building query seed array... [2.326s] Computing hash join... [5.379s] Masking low complexity seeds... [0.271s] Searching alignments... [103.482s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.911s] Building query seed array... [2.479s] Computing hash join... [5.351s] Masking low complexity seeds... [0.259s] Searching alignments... [78.844s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.95s] Building query seed array... [2.01s] Computing hash join... [5.165s] Masking low complexity seeds... [0.221s] Searching alignments... [81.53s] Deallocating memory... [0s] Deallocating buffers... [0.702s] Clearing query masking... [1.393s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.35s] Sorting trace points... [1.174s] Computing alignments... [40.456s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [1.368s] Computing alignments... [41.896s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.086s] Computing alignments... [42.236s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [1.37s] Computing alignments... [40.042s] Deallocating buffers... [0.029s] Loading trace points... [0.051s] Sorting trace points... [1.343s] Computing alignments... [40.782s] Deallocating buffers... [0.029s] Loading trace points... [0.219s] Sorting trace points... [1.277s] Computing alignments... [39.968s] Deallocating buffers... [0.029s] Loading trace points... [0.091s] Sorting trace points... [1.261s] Computing alignments... [40.497s] Deallocating buffers... [0.038s] Loading trace points... [0.07s] Sorting trace points... [1.056s] Computing alignments... [40.432s] Deallocating buffers... [0.035s] Loading trace points... [0.083s] Sorting trace points... [1.372s] Computing alignments... [39.987s] Deallocating buffers... [0.029s] Loading trace points... [0.092s] Sorting trace points... [1.372s] Computing alignments... [40.69s] Deallocating buffers... [0.024s] Loading trace points... [0.068s] Sorting trace points... [1.09s] Computing alignments... [41.052s] Deallocating buffers... [0.034s] Loading trace points... [0.064s] Sorting trace points... [1.327s] Computing alignments... [42.427s] Deallocating buffers... [0.029s] Loading trace points... [0.05s] Sorting trace points... [1.104s] Computing alignments... [39.069s] Deallocating buffers... [0.021s] Loading trace points... [0.074s] Sorting trace points... [1.284s] Computing alignments... [41.525s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.132s] Computing alignments... [40.669s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.257s] Computing alignments... [39.736s] Deallocating buffers... [0.027s] Loading trace points... [0s] [680.365s] Deallocating reference... [0.093s] Loading reference sequences... [29.189s] Masking reference... [30.89s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [34.151s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.003s] Building query seed array... [2.133s] Computing hash join... [5.644s] Masking low complexity seeds... [0.23s] Searching alignments... [291.031s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.719s] Building query seed array... [2.788s] Computing hash join... [5.717s] Masking low complexity seeds... [0.252s] Searching alignments... [117.272s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.506s] Building query seed array... [2.625s] Computing hash join... [5.093s] Masking low complexity seeds... [0.239s] Searching alignments... [92.77s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.232s] Building query seed array... [2.239s] Computing hash join... [4.916s] Masking low complexity seeds... [0.215s] Searching alignments... [86.6s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.818s] Building query seed array... [2.143s] Computing hash join... [4.787s] Masking low complexity seeds... [0.211s] Searching alignments... [129.254s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.956s] Building query seed array... [2.472s] Computing hash join... [5.052s] Masking low complexity seeds... [0.238s] Searching alignments... [104.963s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.705s] Building query seed array... [2.447s] Computing hash join... [4.971s] Masking low complexity seeds... [0.208s] Searching alignments... [80.249s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.656s] Building query seed array... [2.054s] Computing hash join... [4.836s] Masking low complexity seeds... [0.217s] Searching alignments... [84.693s] Deallocating memory... [0s] Deallocating buffers... [1.148s] Clearing query masking... [1.389s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.162s] Sorting trace points... [1.36s] Computing alignments... [41.442s] Deallocating buffers... [0.032s] Loading trace points... [0.05s] Sorting trace points... [1.318s] Computing alignments... [42.796s] Deallocating buffers... [0.025s] Loading trace points... [0.072s] Sorting trace points... [1.225s] Computing alignments... [42.276s] Deallocating buffers... [0.031s] Loading trace points... [0.082s] Sorting trace points... [1.394s] Computing alignments... [40.704s] Deallocating buffers... [0.024s] Loading trace points... [0.057s] Sorting trace points... [1.311s] Computing alignments... [41.053s] Deallocating buffers... [0.028s] Loading trace points... [0.064s] Sorting trace points... [1.162s] Computing alignments... [40.222s] Deallocating buffers... [0.019s] Loading trace points... [0.961s] Sorting trace points... [1.189s] Computing alignments... [40.662s] Deallocating buffers... [0.033s] Loading trace points... [0.087s] Sorting trace points... [1.342s] Computing alignments... [40.754s] Deallocating buffers... [0.03s] Loading trace points... [0.068s] Sorting trace points... [1.339s] Computing alignments... [40.11s] Deallocating buffers... [0.024s] Loading trace points... [0.045s] Sorting trace points... [1.36s] Computing alignments... [40.702s] Deallocating buffers... [0.024s] Loading trace points... [0.081s] Sorting trace points... [1.024s] Computing alignments... [41.51s] Deallocating buffers... [0.025s] Loading trace points... [0.057s] Sorting trace points... [1.318s] Computing alignments... [42.618s] Deallocating buffers... [0.035s] Loading trace points... [0.067s] Sorting trace points... [1.378s] Computing alignments... [39.322s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.369s] Computing alignments... [42.086s] Deallocating buffers... [0.022s] Loading trace points... [0.067s] Sorting trace points... [1.351s] Computing alignments... [40.492s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.274s] Computing alignments... [40.056s] Deallocating buffers... [0.024s] Loading trace points... [0s] [687.051s] Deallocating reference... [0.102s] Loading reference sequences... [29.105s] Masking reference... [32.232s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [33.684s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.267s] Building query seed array... [2.095s] Computing hash join... [5.673s] Masking low complexity seeds... [0.226s] Searching alignments... [286.444s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.888s] Building query seed array... [2.906s] Computing hash join... [6.012s] Masking low complexity seeds... [0.229s] Searching alignments... [115.716s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.489s] Building query seed array... [2.671s] Computing hash join... [5.049s] Masking low complexity seeds... [0.226s] Searching alignments... [91.35s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.402s] Building query seed array... [2.294s] Computing hash join... [5.094s] Masking low complexity seeds... [0.271s] Searching alignments... [88.131s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.162s] Building query seed array... [1.986s] Computing hash join... [5.065s] Masking low complexity seeds... [0.214s] Searching alignments... [128.74s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.052s] Building query seed array... [2.431s] Computing hash join... [5.148s] Masking low complexity seeds... [0.219s] Searching alignments... [107.329s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.746s] Building query seed array... [2.442s] Computing hash join... [5.121s] Masking low complexity seeds... [0.213s] Searching alignments... [79.517s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.019s] Building query seed array... [2.174s] Computing hash join... [5.511s] Masking low complexity seeds... [0.267s] Searching alignments... [83.965s] Deallocating memory... [0s] Deallocating buffers... [1.21s] Clearing query masking... [1.41s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.857s] Sorting trace points... [1.126s] Computing alignments... [39.509s] Deallocating buffers... [0.018s] Loading trace points... [0.089s] Sorting trace points... [1.313s] Computing alignments... [41.097s] Deallocating buffers... [0.028s] Loading trace points... [0.06s] Sorting trace points... [1.358s] Computing alignments... [40.397s] Deallocating buffers... [0.024s] Loading trace points... [0.058s] Sorting trace points... [1.348s] Computing alignments... [38.933s] Deallocating buffers... [0.028s] Loading trace points... [0.058s] Sorting trace points... [1.36s] Computing alignments... [38.788s] Deallocating buffers... [0.023s] Loading trace points... [0.051s] Sorting trace points... [1.189s] Computing alignments... [38.459s] Deallocating buffers... [0.036s] Loading trace points... [0.061s] Sorting trace points... [1.022s] Computing alignments... [39.37s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.315s] Computing alignments... [38.965s] Deallocating buffers... [0.027s] Loading trace points... [0.069s] Sorting trace points... [1.135s] Computing alignments... [38.676s] Deallocating buffers... [0.024s] Loading trace points... [0.046s] Sorting trace points... [1.33s] Computing alignments... [39.54s] Deallocating buffers... [0.024s] Loading trace points... [0.068s] Sorting trace points... [1.184s] Computing alignments... [39.32s] Deallocating buffers... [0.025s] Loading trace points... [0.075s] Sorting trace points... [1.237s] Computing alignments... [41.178s] Deallocating buffers... [0.027s] Loading trace points... [0.058s] Sorting trace points... [0.99s] Computing alignments... [37.749s] Deallocating buffers... [0.017s] Loading trace points... [0.06s] Sorting trace points... [1.335s] Computing alignments... [39.739s] Deallocating buffers... [0.027s] Loading trace points... [0.056s] Sorting trace points... [1.203s] Computing alignments... [38.766s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.284s] Computing alignments... [38.331s] Deallocating buffers... [0.023s] Loading trace points... [0s] [657.806s] Deallocating reference... [0.088s] Loading reference sequences... [32.353s] Masking reference... [32.131s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.121s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.493s] Building query seed array... [2.113s] Computing hash join... [5.9s] Masking low complexity seeds... [0.238s] Searching alignments... [283.847s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.41s] Building query seed array... [2.397s] Computing hash join... [5.871s] Masking low complexity seeds... [0.227s] Searching alignments... [117.897s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.598s] Building query seed array... [2.458s] Computing hash join... [6.068s] Masking low complexity seeds... [0.235s] Searching alignments... [94.157s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.764s] Building query seed array... [1.971s] Computing hash join... [6.022s] Masking low complexity seeds... [0.246s] Searching alignments... [90.749s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.06s] Building query seed array... [1.856s] Computing hash join... [5.75s] Masking low complexity seeds... [0.219s] Searching alignments... [129.204s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.76s] Building query seed array... [2.184s] Computing hash join... [5.954s] Masking low complexity seeds... [0.221s] Searching alignments... [107.725s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.257s] Building query seed array... [2.26s] Computing hash join... [5.834s] Masking low complexity seeds... [0.214s] Searching alignments... [80.471s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.104s] Building query seed array... [1.898s] Computing hash join... [5.922s] Masking low complexity seeds... [0.222s] Searching alignments... [85.027s] Deallocating memory... [0s] Deallocating buffers... [0.162s] Clearing query masking... [1.477s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.235s] Sorting trace points... [1.4s] Computing alignments... [39.608s] Deallocating buffers... [0.05s] Loading trace points... [0.056s] Sorting trace points... [1.364s] Computing alignments... [41.532s] Deallocating buffers... [0.067s] Loading trace points... [0.06s] Sorting trace points... [1.295s] Computing alignments... [41.195s] Deallocating buffers... [0.047s] Loading trace points... [0.056s] Sorting trace points... [1.326s] Computing alignments... [39.426s] Deallocating buffers... [0.047s] Loading trace points... [0.071s] Sorting trace points... [1.115s] Computing alignments... [39.148s] Deallocating buffers... [0.058s] Loading trace points... [0.073s] Sorting trace points... [1.218s] Computing alignments... [38.576s] Deallocating buffers... [0.042s] Loading trace points... [0.065s] Sorting trace points... [1.147s] Computing alignments... [39.429s] Deallocating buffers... [0.033s] Loading trace points... [0.065s] Sorting trace points... [1.328s] Computing alignments... [39.801s] Deallocating buffers... [0.051s] Loading trace points... [0.678s] Sorting trace points... [1.375s] Computing alignments... [38.806s] Deallocating buffers... [0.038s] Loading trace points... [0.047s] Sorting trace points... [1.024s] Computing alignments... [39.777s] Deallocating buffers... [0.045s] Loading trace points... [0.072s] Sorting trace points... [1.348s] Computing alignments... [40.213s] Deallocating buffers... [0.05s] Loading trace points... [0.097s] Sorting trace points... [1.388s] Computing alignments... [41.727s] Deallocating buffers... [0.047s] Loading trace points... [0.069s] Sorting trace points... [1.062s] Computing alignments... [37.674s] Deallocating buffers... [0.025s] Loading trace points... [0.072s] Sorting trace points... [1.164s] Computing alignments... [40.709s] Deallocating buffers... [0.038s] Loading trace points... [0.058s] Sorting trace points... [1.07s] Computing alignments... [39.69s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.299s] Computing alignments... [38.81s] Deallocating buffers... [0.045s] Loading trace points... [0s] [665.647s] Deallocating reference... [0.066s] Loading reference sequences... [30.545s] Masking reference... [30.876s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.273s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.122s] Building query seed array... [2.135s] Computing hash join... [5.881s] Masking low complexity seeds... [0.235s] Searching alignments... [286.556s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.881s] Building query seed array... [2.808s] Computing hash join... [5.898s] Masking low complexity seeds... [0.232s] Searching alignments... [117.881s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.887s] Building query seed array... [2.812s] Computing hash join... [5.586s] Masking low complexity seeds... [0.241s] Searching alignments... [93.506s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.674s] Building query seed array... [2.27s] Computing hash join... [5.08s] Masking low complexity seeds... [0.273s] Searching alignments... [89.14s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.098s] Building query seed array... [1.935s] Computing hash join... [5.117s] Masking low complexity seeds... [0.208s] Searching alignments... [134.438s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.936s] Building query seed array... [2.393s] Computing hash join... [5.096s] Masking low complexity seeds... [0.25s] Searching alignments... [107.145s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.892s] Building query seed array... [2.39s] Computing hash join... [5.01s] Masking low complexity seeds... [0.24s] Searching alignments... [80.617s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.298s] Building query seed array... [2.105s] Computing hash join... [4.88s] Masking low complexity seeds... [0.225s] Searching alignments... [81.986s] Deallocating memory... [0s] Deallocating buffers... [1.293s] Clearing query masking... [1.409s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.629s] Sorting trace points... [1.383s] Computing alignments... [36.427s] Deallocating buffers... [0.015s] Loading trace points... [0.253s] Sorting trace points... [1.351s] Computing alignments... [37.578s] Deallocating buffers... [0.02s] Loading trace points... [0.073s] Sorting trace points... [1.007s] Computing alignments... [37.663s] Deallocating buffers... [0.036s] Loading trace points... [0.086s] Sorting trace points... [1.374s] Computing alignments... [36.734s] Deallocating buffers... [0.028s] Loading trace points... [0.082s] Sorting trace points... [1.163s] Computing alignments... [36.193s] Deallocating buffers... [0.018s] Loading trace points... [0.087s] Sorting trace points... [1.297s] Computing alignments... [35.989s] Deallocating buffers... [0.021s] Loading trace points... [0.068s] Sorting trace points... [1.121s] Computing alignments... [36.947s] Deallocating buffers... [0.017s] Loading trace points... [0.085s] Sorting trace points... [1.144s] Computing alignments... [36.773s] Deallocating buffers... [0.026s] Loading trace points... [0.09s] Sorting trace points... [0.965s] Computing alignments... [36.635s] Deallocating buffers... [0.017s] Loading trace points... [0.045s] Sorting trace points... [1.345s] Computing alignments... [37.088s] Deallocating buffers... [0.026s] Loading trace points... [0.095s] Sorting trace points... [1.322s] Computing alignments... [36.837s] Deallocating buffers... [0.027s] Loading trace points... [0.075s] Sorting trace points... [1.075s] Computing alignments... [38.142s] Deallocating buffers... [0.025s] Loading trace points... [0.064s] Sorting trace points... [1.334s] Computing alignments... [35.561s] Deallocating buffers... [0.02s] Loading trace points... [0.081s] Sorting trace points... [1.285s] Computing alignments... [36.891s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.274s] Computing alignments... [36.281s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.278s] Computing alignments... [35.631s] Deallocating buffers... [0.027s] Loading trace points... [0s] [616.516s] Deallocating reference... [0.065s] Loading reference sequences... [29.377s] Masking reference... [32.142s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.485s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.345s] Building query seed array... [2.115s] Computing hash join... [5.617s] Masking low complexity seeds... [0.236s] Searching alignments... [282.931s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.847s] Building query seed array... [2.63s] Computing hash join... [5.745s] Masking low complexity seeds... [0.251s] Searching alignments... [118.274s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.165s] Building query seed array... [2.619s] Computing hash join... [5.949s] Masking low complexity seeds... [0.287s] Searching alignments... [94.358s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.383s] Building query seed array... [2.251s] Computing hash join... [5.018s] Masking low complexity seeds... [0.222s] Searching alignments... [87.608s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.485s] Building query seed array... [2.013s] Computing hash join... [4.88s] Masking low complexity seeds... [0.23s] Searching alignments... [134.044s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.266s] Building query seed array... [2.254s] Computing hash join... [5.297s] Masking low complexity seeds... [0.248s] Searching alignments... [106.086s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.864s] Building query seed array... [2.406s] Computing hash join... [5.032s] Masking low complexity seeds... [0.239s] Searching alignments... [80.601s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10s] Building query seed array... [1.962s] Computing hash join... [5.479s] Masking low complexity seeds... [0.23s] Searching alignments... [86.501s] Deallocating memory... [0s] Deallocating buffers... [1.026s] Clearing query masking... [1.391s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.294s] Sorting trace points... [0.996s] Computing alignments... [42.867s] Deallocating buffers... [0.064s] Loading trace points... [0.08s] Sorting trace points... [1.357s] Computing alignments... [45.249s] Deallocating buffers... [0.081s] Loading trace points... [0.088s] Sorting trace points... [1.333s] Computing alignments... [44.386s] Deallocating buffers... [0.059s] Loading trace points... [0.078s] Sorting trace points... [1.072s] Computing alignments... [42.407s] Deallocating buffers... [0.051s] Loading trace points... [0.081s] Sorting trace points... [1.282s] Computing alignments... [42.791s] Deallocating buffers... [0.056s] Loading trace points... [0.079s] Sorting trace points... [1.077s] Computing alignments... [42.035s] Deallocating buffers... [0.06s] Loading trace points... [0.205s] Sorting trace points... [1.093s] Computing alignments... [42.615s] Deallocating buffers... [0.053s] Loading trace points... [0.001s] Sorting trace points... [1.389s] Computing alignments... [42.701s] Deallocating buffers... [0.045s] Loading trace points... [0.059s] Sorting trace points... [1.012s] Computing alignments... [42.302s] Deallocating buffers... [0.059s] Loading trace points... [0.052s] Sorting trace points... [1.176s] Computing alignments... [42.767s] Deallocating buffers... [0.061s] Loading trace points... [0.099s] Sorting trace points... [1.092s] Computing alignments... [42.837s] Deallocating buffers... [0.044s] Loading trace points... [0.135s] Sorting trace points... [1.387s] Computing alignments... [44.324s] Deallocating buffers... [0.054s] Loading trace points... [0.071s] Sorting trace points... [1.019s] Computing alignments... [40.939s] Deallocating buffers... [0.045s] Loading trace points... [1.238s] Sorting trace points... [1.38s] Computing alignments... [43.428s] Deallocating buffers... [0.05s] Loading trace points... [0.082s] Sorting trace points... [1.258s] Computing alignments... [42.039s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [1.252s] Computing alignments... [42.128s] Deallocating buffers... [0.045s] Loading trace points... [0s] [715.712s] Deallocating reference... [0.068s] Loading reference sequences... [260.132s] Masking reference... [30.905s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.056s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.232s] Building query seed array... [2.09s] Computing hash join... [5.531s] Masking low complexity seeds... [0.226s] Searching alignments... [288.117s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.284s] Building query seed array... [2.718s] Computing hash join... [5.363s] Masking low complexity seeds... [0.218s] Searching alignments... [116.934s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.449s] Building query seed array... [2.554s] Computing hash join... [5.74s] Masking low complexity seeds... [0.26s] Searching alignments... [91.884s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.034s] Building query seed array... [2.036s] Computing hash join... [5.466s] Masking low complexity seeds... [0.227s] Searching alignments... [88.583s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.941s] Building query seed array... [1.884s] Computing hash join... [5.236s] Masking low complexity seeds... [0.215s] Searching alignments... [130.069s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.774s] Building query seed array... [2.329s] Computing hash join... [5.344s] Masking low complexity seeds... [0.224s] Searching alignments... [107.071s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.977s] Building query seed array... [2.331s] Computing hash join... [5.365s] Masking low complexity seeds... [0.219s] Searching alignments... [80.725s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.81s] Building query seed array... [1.956s] Computing hash join... [5.3s] Masking low complexity seeds... [0.215s] Searching alignments... [82.009s] Deallocating memory... [0s] Deallocating buffers... [0.452s] Clearing query masking... [1.503s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.273s] Sorting trace points... [1.386s] Computing alignments... [42.335s] Deallocating buffers... [0.054s] Loading trace points... [0.073s] Sorting trace points... [1.089s] Computing alignments... [43.956s] Deallocating buffers... [0.064s] Loading trace points... [0.001s] Sorting trace points... [1.005s] Computing alignments... [43.638s] Deallocating buffers... [0.057s] Loading trace points... [0.775s] Sorting trace points... [1.199s] Computing alignments... [41.154s] Deallocating buffers... [0.058s] Loading trace points... [0.105s] Sorting trace points... [1.309s] Computing alignments... [41.362s] Deallocating buffers... [0.06s] Loading trace points... [0.047s] Sorting trace points... [1.182s] Computing alignments... [40.872s] Deallocating buffers... [0.061s] Loading trace points... [0.085s] Sorting trace points... [1.385s] Computing alignments... [41.103s] Deallocating buffers... [0.043s] Loading trace points... [0.057s] Sorting trace points... [1.181s] Computing alignments... [41.521s] Deallocating buffers... [0.049s] Loading trace points... [0.041s] Sorting trace points... [1.334s] Computing alignments... [40.528s] Deallocating buffers... [0.068s] Loading trace points... [0.082s] Sorting trace points... [1.393s] Computing alignments... [41.725s] Deallocating buffers... [0.069s] Loading trace points... [0.634s] Sorting trace points... [1.416s] Computing alignments... [41.963s] Deallocating buffers... [0.065s] Loading trace points... [0.001s] Sorting trace points... [1.314s] Computing alignments... [43.414s] Deallocating buffers... [0.053s] Loading trace points... [0.067s] Sorting trace points... [1.341s] Computing alignments... [39.833s] Deallocating buffers... [0.051s] Loading trace points... [0.04s] Sorting trace points... [1.017s] Computing alignments... [42.829s] Deallocating buffers... [0.051s] Loading trace points... [0.077s] Sorting trace points... [1.332s] Computing alignments... [41.365s] Deallocating buffers... [0.068s] Loading trace points... [0s] Sorting trace points... [1.314s] Computing alignments... [40.235s] Deallocating buffers... [0.055s] Loading trace points... [0s] [698.478s] Deallocating reference... [0.068s] Loading reference sequences... [31s] Masking reference... [30.859s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.37s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.157s] Building query seed array... [2.186s] Computing hash join... [5.505s] Masking low complexity seeds... [0.218s] Searching alignments... [282.791s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.381s] Building query seed array... [2.683s] Computing hash join... [5.739s] Masking low complexity seeds... [0.239s] Searching alignments... [119.298s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.842s] Building query seed array... [2.822s] Computing hash join... [5.103s] Masking low complexity seeds... [0.247s] Searching alignments... [93.83s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.151s] Building query seed array... [2.235s] Computing hash join... [5.193s] Masking low complexity seeds... [0.238s] Searching alignments... [90.537s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.259s] Building query seed array... [1.983s] Computing hash join... [4.963s] Masking low complexity seeds... [0.214s] Searching alignments... [131.089s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.693s] Building query seed array... [2.374s] Computing hash join... [5s] Masking low complexity seeds... [0.21s] Searching alignments... [107.383s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.53s] Building query seed array... [2.416s] Computing hash join... [4.835s] Masking low complexity seeds... [0.212s] Searching alignments... [80.566s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.165s] Building query seed array... [2.083s] Computing hash join... [4.873s] Masking low complexity seeds... [0.224s] Searching alignments... [83.415s] Deallocating memory... [0s] Deallocating buffers... [0.941s] Clearing query masking... [1.558s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.196s] Sorting trace points... [1.362s] Computing alignments... [39.632s] Deallocating buffers... [0.019s] Loading trace points... [0.055s] Sorting trace points... [1.011s] Computing alignments... [40.952s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [1.32s] Computing alignments... [41.279s] Deallocating buffers... [0.019s] Loading trace points... [0.069s] Sorting trace points... [1.026s] Computing alignments... [39.307s] Deallocating buffers... [0.026s] Loading trace points... [0.067s] Sorting trace points... [1.045s] Computing alignments... [39.613s] Deallocating buffers... [0.029s] Loading trace points... [0.067s] Sorting trace points... [1.116s] Computing alignments... [38.98s] Deallocating buffers... [0.031s] Loading trace points... [0.108s] Sorting trace points... [1.313s] Computing alignments... [39.389s] Deallocating buffers... [0.024s] Loading trace points... [0.068s] Sorting trace points... [1.369s] Computing alignments... [39.426s] Deallocating buffers... [0.033s] Loading trace points... [0.082s] Sorting trace points... [1.312s] Computing alignments... [38.456s] Deallocating buffers... [0.024s] Loading trace points... [0.048s] Sorting trace points... [1.362s] Computing alignments... [39.692s] Deallocating buffers... [0.027s] Loading trace points... [0.08s] Sorting trace points... [1.31s] Computing alignments... [39.714s] Deallocating buffers... [0.027s] Loading trace points... [0.073s] Sorting trace points... [1.353s] Computing alignments... [40.735s] Deallocating buffers... [0.028s] Loading trace points... [0.056s] Sorting trace points... [1.199s] Computing alignments... [38.16s] Deallocating buffers... [0.019s] Loading trace points... [0.234s] Sorting trace points... [1.395s] Computing alignments... [40.125s] Deallocating buffers... [0.024s] Loading trace points... [0.062s] Sorting trace points... [1.315s] Computing alignments... [39.21s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [0.983s] Computing alignments... [38.459s] Deallocating buffers... [0.025s] Loading trace points... [0s] [661.775s] Deallocating reference... [0.102s] Loading reference sequences... [23.384s] Masking reference... [26.004s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.566s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.457s] Building query seed array... [2.138s] Computing hash join... [4.178s] Masking low complexity seeds... [0.217s] Searching alignments... [228.887s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.078s] Building query seed array... [2.308s] Computing hash join... [4.637s] Masking low complexity seeds... [0.215s] Searching alignments... [93.859s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.975s] Building query seed array... [2.525s] Computing hash join... [4.228s] Masking low complexity seeds... [0.205s] Searching alignments... [75.803s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.289s] Building query seed array... [1.974s] Computing hash join... [4.603s] Masking low complexity seeds... [0.218s] Searching alignments... [72.735s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [7.989s] Building query seed array... [1.899s] Computing hash join... [4.323s] Masking low complexity seeds... [0.201s] Searching alignments... [105.449s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.75s] Building query seed array... [2.079s] Computing hash join... [4.178s] Masking low complexity seeds... [0.187s] Searching alignments... [88.146s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.699s] Building query seed array... [2.182s] Computing hash join... [4.119s] Masking low complexity seeds... [0.198s] Searching alignments... [64.715s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.596s] Building query seed array... [1.811s] Computing hash join... [4.519s] Masking low complexity seeds... [0.22s] Searching alignments... [68.365s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.485s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.002s] Sorting trace points... [1.137s] Computing alignments... [31.287s] Deallocating buffers... [0.012s] Loading trace points... [0.056s] Sorting trace points... [0.985s] Computing alignments... [32.812s] Deallocating buffers... [0.021s] Loading trace points... [0.072s] Sorting trace points... [0.829s] Computing alignments... [32.169s] Deallocating buffers... [0.021s] Loading trace points... [0.002s] Sorting trace points... [0.956s] Computing alignments... [31.142s] Deallocating buffers... [0.024s] Loading trace points... [0.089s] Sorting trace points... [0.829s] Computing alignments... [30.684s] Deallocating buffers... [0.022s] Loading trace points... [0.07s] Sorting trace points... [0.937s] Computing alignments... [30.453s] Deallocating buffers... [0.013s] Loading trace points... [0.063s] Sorting trace points... [1.047s] Computing alignments... [31.045s] Deallocating buffers... [0.017s] Loading trace points... [0.048s] Sorting trace points... [1.023s] Computing alignments... [30.728s] Deallocating buffers... [0.022s] Loading trace points... [0.075s] Sorting trace points... [1.089s] Computing alignments... [30.545s] Deallocating buffers... [0.022s] Loading trace points... [0.049s] Sorting trace points... [1.082s] Computing alignments... [31.599s] Deallocating buffers... [0.02s] Loading trace points... [0.084s] Sorting trace points... [1.093s] Computing alignments... [31.118s] Deallocating buffers... [0.019s] Loading trace points... [0.081s] Sorting trace points... [1.047s] Computing alignments... [32.391s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.055s] Computing alignments... [29.674s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.048s] Computing alignments... [31.708s] Deallocating buffers... [0.02s] Loading trace points... [0.082s] Sorting trace points... [0.96s] Computing alignments... [30.736s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [0.866s] Computing alignments... [30.278s] Deallocating buffers... [0.02s] Loading trace points... [0s] [521.518s] Deallocating reference... [0.088s] Loading reference sequences... [0.107s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2528.72s] [2528.72s] Deallocating queries... [0.055s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.34s] [4.393s] Closing the database... [0s] Cleaning up... [0s] Total time = 29726.8s Reported 2333804008 pairwise alignments, 2333804008 HSPs. 5072643 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-22.trimmed.R2.fastq.gz complete: CH01-22.trimmed.R2.blastx.meganized.daa Now MEGANizing CH01-22.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH01-22.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (413.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,630.3s) Total reads: 5,072,643 With hits: 5,072,643 Alignments: 1,743,315,774 Assig. Taxonomy: 2,463,699 Assig. SEED: 131,932 Assig. EGGNOG: 49,756 Assig. GTDB: 308,058 Assig. EC: 419,448 Assig. INTERPRO2GO: 1,102,189 MinSupport set to: 2536 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 7,143 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (18.0s) Min-supp. changes: 5,676 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.0s) Binning reads Syncing 100% (0.2s) Class. Taxonomy: 205 Class. SEED: 539 Class. EGGNOG: 1,861 Class. GTDB: 72 Class. EC: 2,587 Class. INTERPRO2GO: 8,930 Total time: 4,081s Peak memory: 38.7 of 195.3G MEGANization of CH01-22.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-38.trimmed.R1.fastq.gz... ebb36295a5d4021c02e7ecaa6bd5662f /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-38.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-38.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.299s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.744s] Opening the output file... [0s] Loading query sequences... [121.949s] Masking queries... [32.781s] Algorithm: Double-indexed Building query histograms... [32.238s] Loading reference sequences... [32.802s] Masking reference... [31.433s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [31.884s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.046s] Building query seed array... [2.764s] Computing hash join... [6.457s] Masking low complexity seeds... [0.261s] Searching alignments... [837.831s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.386s] Building query seed array... [3.235s] Computing hash join... [6.508s] Masking low complexity seeds... [0.268s] Searching alignments... [351.834s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.551s] Building query seed array... [3.36s] Computing hash join... [6.439s] Masking low complexity seeds... [0.255s] Searching alignments... [272.58s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.168s] Building query seed array... [2.694s] Computing hash join... [6.354s] Masking low complexity seeds... [0.247s] Searching alignments... [262.592s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.401s] Building query seed array... [2.595s] Computing hash join... [6.213s] Masking low complexity seeds... [0.239s] Searching alignments... [392.209s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.316s] Building query seed array... [2.957s] Computing hash join... [6.331s] Masking low complexity seeds... [0.24s] Searching alignments... [299.682s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.07s] Building query seed array... [3.041s] Computing hash join... [6.293s] Masking low complexity seeds... [0.239s] Searching alignments... [221.714s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.792s] Building query seed array... [2.675s] Computing hash join... [6.2s] Masking low complexity seeds... [0.232s] Searching alignments... [230.944s] Deallocating memory... [0s] Deallocating buffers... [0.164s] Clearing query masking... [2.212s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.766s] Sorting trace points... [3.338s] Computing alignments... [97.539s] Deallocating buffers... [0.055s] Loading trace points... [0.12s] Sorting trace points... [2.797s] Computing alignments... [99.243s] Deallocating buffers... [0.07s] Loading trace points... [0.001s] Sorting trace points... [3.862s] Computing alignments... [98.011s] Deallocating buffers... [0.526s] Loading trace points... [0.043s] Sorting trace points... [2.568s] Computing alignments... [102.098s] Deallocating buffers... [0.068s] Loading trace points... [0.078s] Sorting trace points... [3.882s] Computing alignments... [98.694s] Deallocating buffers... [0.474s] Loading trace points... [0.059s] Sorting trace points... [2.368s] Computing alignments... [99.718s] Deallocating buffers... [0.067s] Loading trace points... [0.069s] Sorting trace points... [3.413s] Computing alignments... [99.738s] Deallocating buffers... [0.131s] Loading trace points... [0.057s] Sorting trace points... [3.517s] Computing alignments... [104.621s] Deallocating buffers... [0.314s] Loading trace points... [0.05s] Sorting trace points... [3.7s] Computing alignments... [99.768s] Deallocating buffers... [0.373s] Loading trace points... [0.075s] Sorting trace points... [3.73s] Computing alignments... [99.534s] Deallocating buffers... [0.499s] Loading trace points... [0.078s] Sorting trace points... [3.067s] Computing alignments... [99.917s] Deallocating buffers... [0.051s] Loading trace points... [0.048s] Sorting trace points... [3.296s] Computing alignments... [104.39s] Deallocating buffers... [0.06s] Loading trace points... [0.067s] Sorting trace points... [2.702s] Computing alignments... [101.214s] Deallocating buffers... [0.265s] Loading trace points... [0.661s] Sorting trace points... [2.704s] Computing alignments... [100.169s] Deallocating buffers... [0.122s] Loading trace points... [0.116s] Sorting trace points... [3.013s] Computing alignments... [101.935s] Deallocating buffers... [0.289s] Loading trace points... [0s] Sorting trace points... [3.801s] Computing alignments... [102.585s] Deallocating buffers... [0.281s] Loading trace points... [0s] [1683.02s] Deallocating reference... [0.063s] Loading reference sequences... [38.286s] Masking reference... [31.208s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.429s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.009s] Building query seed array... [2.894s] Computing hash join... [5.812s] Masking low complexity seeds... [0.247s] Searching alignments... [822.517s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.502s] Building query seed array... [3.916s] Computing hash join... [6.057s] Masking low complexity seeds... [0.297s] Searching alignments... [343.666s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.542s] Building query seed array... [3.553s] Computing hash join... [6.21s] Masking low complexity seeds... [0.253s] Searching alignments... [267.028s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.138s] Building query seed array... [3.047s] Computing hash join... [5.657s] Masking low complexity seeds... [0.262s] Searching alignments... [258.203s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.144s] Building query seed array... [2.804s] Computing hash join... [5.267s] Masking low complexity seeds... [0.309s] Searching alignments... [380.297s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.053s] Building query seed array... [3.097s] Computing hash join... [5.604s] Masking low complexity seeds... [0.295s] Searching alignments... [292.391s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.659s] Building query seed array... [3.408s] Computing hash join... [5.537s] Masking low complexity seeds... [0.274s] Searching alignments... [220.007s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.284s] Building query seed array... [3.042s] Computing hash join... [5.271s] Masking low complexity seeds... [0.245s] Searching alignments... [228.681s] Deallocating memory... [0s] Deallocating buffers... [1.183s] Clearing query masking... [1.993s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.075s] Sorting trace points... [3.232s] Computing alignments... [101.095s] Deallocating buffers... [0.072s] Loading trace points... [0.09s] Sorting trace points... [3.168s] Computing alignments... [103.119s] Deallocating buffers... [0.479s] Loading trace points... [0.065s] Sorting trace points... [2.803s] Computing alignments... [101.244s] Deallocating buffers... [0.083s] Loading trace points... [0.043s] Sorting trace points... [2.505s] Computing alignments... [106.527s] Deallocating buffers... [0.06s] Loading trace points... [0.737s] Sorting trace points... [2.937s] Computing alignments... [103.746s] Deallocating buffers... [0.149s] Loading trace points... [0.065s] Sorting trace points... [3.724s] Computing alignments... [103.962s] Deallocating buffers... [0.35s] Loading trace points... [0.08s] Sorting trace points... [2.507s] Computing alignments... [104.334s] Deallocating buffers... [0.088s] Loading trace points... [0.064s] Sorting trace points... [3.19s] Computing alignments... [109.235s] Deallocating buffers... [0.279s] Loading trace points... [0.052s] Sorting trace points... [3.062s] Computing alignments... [102.628s] Deallocating buffers... [0.414s] Loading trace points... [0.069s] Sorting trace points... [3.254s] Computing alignments... [104.264s] Deallocating buffers... [0.099s] Loading trace points... [0.072s] Sorting trace points... [2.789s] Computing alignments... [103.129s] Deallocating buffers... [0.2s] Loading trace points... [0.05s] Sorting trace points... [2.917s] Computing alignments... [108.635s] Deallocating buffers... [0.094s] Loading trace points... [0.069s] Sorting trace points... [2.905s] Computing alignments... [105.074s] Deallocating buffers... [0.377s] Loading trace points... [0.058s] Sorting trace points... [3.148s] Computing alignments... [103.428s] Deallocating buffers... [0.128s] Loading trace points... [0.103s] Sorting trace points... [2.388s] Computing alignments... [105.619s] Deallocating buffers... [0.12s] Loading trace points... [0s] Sorting trace points... [2.529s] Computing alignments... [106.81s] Deallocating buffers... [0.092s] Loading trace points... [0s] [1740.85s] Deallocating reference... [0.071s] Loading reference sequences... [28.874s] Masking reference... [30.859s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.007s] Building reference histograms... [32.438s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.436s] Building query seed array... [2.972s] Computing hash join... [5.663s] Masking low complexity seeds... [0.245s] Searching alignments... [837.335s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.321s] Building query seed array... [3.593s] Computing hash join... [5.755s] Masking low complexity seeds... [0.285s] Searching alignments... [351.762s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.281s] Building query seed array... [3.652s] Computing hash join... [5.523s] Masking low complexity seeds... [0.256s] Searching alignments... [270.276s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.511s] Building query seed array... [2.895s] Computing hash join... [5.749s] Masking low complexity seeds... [0.335s] Searching alignments... [265.528s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.887s] Building query seed array... [2.617s] Computing hash join... [5.296s] Masking low complexity seeds... [0.24s] Searching alignments... [387.14s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.301s] Building query seed array... [3.248s] Computing hash join... [5.544s] Masking low complexity seeds... [0.288s] Searching alignments... [297.169s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.939s] Building query seed array... [3.435s] Computing hash join... [5.428s] Masking low complexity seeds... [0.242s] Searching alignments... [222.037s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.987s] Building query seed array... [2.875s] Computing hash join... [5.56s] Masking low complexity seeds... [0.235s] Searching alignments... [227.549s] Deallocating memory... [0s] Deallocating buffers... [0.988s] Clearing query masking... [1.871s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [16.445s] Sorting trace points... [3.311s] Computing alignments... [101.691s] Deallocating buffers... [0.073s] Loading trace points... [0.064s] Sorting trace points... [3.916s] Computing alignments... [104.187s] Deallocating buffers... [0.758s] Loading trace points... [0.081s] Sorting trace points... [2.349s] Computing alignments... [101.932s] Deallocating buffers... [0.074s] Loading trace points... [0.079s] Sorting trace points... [3.288s] Computing alignments... [107.09s] Deallocating buffers... [0.526s] Loading trace points... [0.056s] Sorting trace points... [3.295s] Computing alignments... [104.527s] Deallocating buffers... [0.074s] Loading trace points... [0.069s] Sorting trace points... [2.362s] Computing alignments... [104.984s] Deallocating buffers... [0.216s] Loading trace points... [0.066s] Sorting trace points... [3.063s] Computing alignments... [104.956s] Deallocating buffers... [0.107s] Loading trace points... [0.093s] Sorting trace points... [2.627s] Computing alignments... [109.011s] Deallocating buffers... [0.094s] Loading trace points... [0.001s] Sorting trace points... [2.874s] Computing alignments... [104.615s] Deallocating buffers... [0.266s] Loading trace points... [0.053s] Sorting trace points... [3.692s] Computing alignments... [104.421s] Deallocating buffers... [0.319s] Loading trace points... [0.067s] Sorting trace points... [2.403s] Computing alignments... [103.484s] Deallocating buffers... [0.1s] Loading trace points... [0s] Sorting trace points... [4.173s] Computing alignments... [108.751s] Deallocating buffers... [0.653s] Loading trace points... [0.002s] Sorting trace points... [2.52s] Computing alignments... [106.063s] Deallocating buffers... [0.091s] Loading trace points... [0s] Sorting trace points... [3.791s] Computing alignments... [104.304s] Deallocating buffers... [0.347s] Loading trace points... [0.062s] Sorting trace points... [2.834s] Computing alignments... [106.171s] Deallocating buffers... [0.245s] Loading trace points... [0s] Sorting trace points... [3.184s] Computing alignments... [106.669s] Deallocating buffers... [0.237s] Loading trace points... [0s] [1753.95s] Deallocating reference... [0.065s] Loading reference sequences... [29.118s] Masking reference... [30.901s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.4s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.851s] Building query seed array... [2.831s] Computing hash join... [6.491s] Masking low complexity seeds... [0.252s] Searching alignments... [837.112s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.67s] Building query seed array... [3.675s] Computing hash join... [5.21s] Masking low complexity seeds... [0.254s] Searching alignments... [351.357s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.463s] Building query seed array... [3.429s] Computing hash join... [5.956s] Masking low complexity seeds... [0.247s] Searching alignments... [272.116s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.465s] Building query seed array... [3.137s] Computing hash join... [5.341s] Masking low complexity seeds... [0.274s] Searching alignments... [262.264s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.816s] Building query seed array... [2.779s] Computing hash join... [5.128s] Masking low complexity seeds... [0.261s] Searching alignments... [384.131s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.71s] Building query seed array... [3.36s] Computing hash join... [5s] Masking low complexity seeds... [0.256s] Searching alignments... [297.279s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.877s] Building query seed array... [3.358s] Computing hash join... [5.1s] Masking low complexity seeds... [0.267s] Searching alignments... [219.427s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.509s] Building query seed array... [2.916s] Computing hash join... [5.399s] Masking low complexity seeds... [0.255s] Searching alignments... [229.736s] Deallocating memory... [0s] Deallocating buffers... [1.646s] Clearing query masking... [1.966s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [16.324s] Sorting trace points... [3.215s] Computing alignments... [100.347s] Deallocating buffers... [0.047s] Loading trace points... [0.052s] Sorting trace points... [2.792s] Computing alignments... [102.337s] Deallocating buffers... [0.218s] Loading trace points... [0.07s] Sorting trace points... [3.289s] Computing alignments... [99.964s] Deallocating buffers... [0.453s] Loading trace points... [0.092s] Sorting trace points... [3.377s] Computing alignments... [104.621s] Deallocating buffers... [0.29s] Loading trace points... [0.059s] Sorting trace points... [2.543s] Computing alignments... [101.783s] Deallocating buffers... [0.083s] Loading trace points... [0s] Sorting trace points... [2.29s] Computing alignments... [102.335s] Deallocating buffers... [0.054s] Loading trace points... [0.072s] Sorting trace points... [3.864s] Computing alignments... [102.542s] Deallocating buffers... [0.446s] Loading trace points... [0.098s] Sorting trace points... [2.458s] Computing alignments... [107.121s] Deallocating buffers... [0.07s] Loading trace points... [0.039s] Sorting trace points... [3.574s] Computing alignments... [102.227s] Deallocating buffers... [0.394s] Loading trace points... [0.063s] Sorting trace points... [3.05s] Computing alignments... [101.824s] Deallocating buffers... [0.072s] Loading trace points... [0.063s] Sorting trace points... [3.809s] Computing alignments... [101.539s] Deallocating buffers... [0.723s] Loading trace points... [0.046s] Sorting trace points... [2.896s] Computing alignments... [107.286s] Deallocating buffers... [0.071s] Loading trace points... [0.044s] Sorting trace points... [3.577s] Computing alignments... [103.437s] Deallocating buffers... [0.301s] Loading trace points... [0.046s] Sorting trace points... [4.008s] Computing alignments... [102.521s] Deallocating buffers... [0.646s] Loading trace points... [0.053s] Sorting trace points... [3.205s] Computing alignments... [104.107s] Deallocating buffers... [0.196s] Loading trace points... [0s] Sorting trace points... [2.458s] Computing alignments... [105.033s] Deallocating buffers... [0.155s] Loading trace points... [0s] [1720.9s] Deallocating reference... [0.07s] Loading reference sequences... [251.982s] Masking reference... [31s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.595s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.417s] Building query seed array... [3.073s] Computing hash join... [5.745s] Masking low complexity seeds... [0.257s] Searching alignments... [831.267s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.772s] Building query seed array... [3.769s] Computing hash join... [5.81s] Masking low complexity seeds... [0.251s] Searching alignments... [349.908s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.42s] Building query seed array... [3.677s] Computing hash join... [5.997s] Masking low complexity seeds... [0.254s] Searching alignments... [266.328s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.997s] Building query seed array... [2.833s] Computing hash join... [5.909s] Masking low complexity seeds... [0.261s] Searching alignments... [264.57s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.29s] Building query seed array... [2.723s] Computing hash join... [5.779s] Masking low complexity seeds... [0.253s] Searching alignments... [375.738s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.067s] Building query seed array... [3.118s] Computing hash join... [5.871s] Masking low complexity seeds... [0.304s] Searching alignments... [298.904s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.499s] Building query seed array... [3.475s] Computing hash join... [5.696s] Masking low complexity seeds... [0.241s] Searching alignments... [219.901s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.273s] Building query seed array... [2.909s] Computing hash join... [5.859s] Masking low complexity seeds... [0.26s] Searching alignments... [227.371s] Deallocating memory... [0s] Deallocating buffers... [0.913s] Clearing query masking... [1.876s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.154s] Sorting trace points... [3.238s] Computing alignments... [105.984s] Deallocating buffers... [0.133s] Loading trace points... [0.059s] Sorting trace points... [3.171s] Computing alignments... [109.713s] Deallocating buffers... [0.282s] Loading trace points... [0.053s] Sorting trace points... [3.633s] Computing alignments... [105.572s] Deallocating buffers... [0.525s] Loading trace points... [0.061s] Sorting trace points... [2.97s] Computing alignments... [110.689s] Deallocating buffers... [0.108s] Loading trace points... [0.091s] Sorting trace points... [3.497s] Computing alignments... [108.022s] Deallocating buffers... [0.215s] Loading trace points... [0.068s] Sorting trace points... [3.198s] Computing alignments... [108.871s] Deallocating buffers... [0.203s] Loading trace points... [0.062s] Sorting trace points... [2.886s] Computing alignments... [109.317s] Deallocating buffers... [0.451s] Loading trace points... [0.071s] Sorting trace points... [2.526s] Computing alignments... [114.177s] Deallocating buffers... [0.099s] Loading trace points... [0.062s] Sorting trace points... [2.588s] Computing alignments... [108.949s] Deallocating buffers... [0.191s] Loading trace points... [0.061s] Sorting trace points... [3.164s] Computing alignments... [109.061s] Deallocating buffers... [0.185s] Loading trace points... [0.078s] Sorting trace points... [3.451s] Computing alignments... [107.556s] Deallocating buffers... [0.345s] Loading trace points... [0.077s] Sorting trace points... [3.963s] Computing alignments... [114.296s] Deallocating buffers... [0.503s] Loading trace points... [0.094s] Sorting trace points... [2.9s] Computing alignments... [110.744s] Deallocating buffers... [0.239s] Loading trace points... [0.083s] Sorting trace points... [3.013s] Computing alignments... [109.872s] Deallocating buffers... [0.399s] Loading trace points... [0.054s] Sorting trace points... [2.57s] Computing alignments... [111.103s] Deallocating buffers... [0.096s] Loading trace points... [0s] Sorting trace points... [2.89s] Computing alignments... [111.388s] Deallocating buffers... [0.355s] Loading trace points... [0s] [1826.52s] Deallocating reference... [0.074s] Loading reference sequences... [255.255s] Masking reference... [31.095s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.011s] Building reference histograms... [33.01s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.565s] Building query seed array... [3.021s] Computing hash join... [6.494s] Masking low complexity seeds... [0.252s] Searching alignments... [833.055s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.038s] Building query seed array... [3.844s] Computing hash join... [5.783s] Masking low complexity seeds... [0.257s] Searching alignments... [346.524s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.733s] Building query seed array... [3.619s] Computing hash join... [6.582s] Masking low complexity seeds... [0.247s] Searching alignments... [265.989s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.696s] Building query seed array... [2.97s] Computing hash join... [6.207s] Masking low complexity seeds... [0.249s] Searching alignments... [260.462s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.626s] Building query seed array... [2.749s] Computing hash join... [5.194s] Masking low complexity seeds... [0.269s] Searching alignments... [380.639s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.482s] Building query seed array... [3.309s] Computing hash join... [5.777s] Masking low complexity seeds... [0.3s] Searching alignments... [303.461s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.713s] Building query seed array... [3.349s] Computing hash join... [5.298s] Masking low complexity seeds... [0.243s] Searching alignments... [218.363s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.497s] Building query seed array... [2.856s] Computing hash join... [5.19s] Masking low complexity seeds... [0.27s] Searching alignments... [227.924s] Deallocating memory... [0s] Deallocating buffers... [1.922s] Clearing query masking... [1.866s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.4s] Sorting trace points... [2.652s] Computing alignments... [101.627s] Deallocating buffers... [0.077s] Loading trace points... [0.113s] Sorting trace points... [2.352s] Computing alignments... [105.103s] Deallocating buffers... [0.069s] Loading trace points... [0.103s] Sorting trace points... [3.218s] Computing alignments... [102.057s] Deallocating buffers... [0.326s] Loading trace points... [0.001s] Sorting trace points... [4.093s] Computing alignments... [107.204s] Deallocating buffers... [0.658s] Loading trace points... [0.072s] Sorting trace points... [2.367s] Computing alignments... [103.924s] Deallocating buffers... [0.06s] Loading trace points... [0.051s] Sorting trace points... [2.808s] Computing alignments... [104.489s] Deallocating buffers... [0.175s] Loading trace points... [0.104s] Sorting trace points... [3.612s] Computing alignments... [105.765s] Deallocating buffers... [0.318s] Loading trace points... [0.07s] Sorting trace points... [3.843s] Computing alignments... [110.657s] Deallocating buffers... [0.666s] Loading trace points... [0.064s] Sorting trace points... [2.854s] Computing alignments... [105.42s] Deallocating buffers... [0.073s] Loading trace points... [0.076s] Sorting trace points... [3.769s] Computing alignments... [105.317s] Deallocating buffers... [0.705s] Loading trace points... [0.08s] Sorting trace points... [3.403s] Computing alignments... [103.676s] Deallocating buffers... [0.199s] Loading trace points... [0.086s] Sorting trace points... [3.923s] Computing alignments... [109.818s] Deallocating buffers... [0.698s] Loading trace points... [0.057s] Sorting trace points... [3.627s] Computing alignments... [105.835s] Deallocating buffers... [0.204s] Loading trace points... [0.088s] Sorting trace points... [3.654s] Computing alignments... [105.107s] Deallocating buffers... [0.725s] Loading trace points... [0.066s] Sorting trace points... [3.167s] Computing alignments... [106.247s] Deallocating buffers... [0.072s] Loading trace points... [0s] Sorting trace points... [3.566s] Computing alignments... [107.99s] Deallocating buffers... [0.191s] Loading trace points... [0s] [1765.92s] Deallocating reference... [0.067s] Loading reference sequences... [33.115s] Masking reference... [30.916s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.922s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.133s] Building query seed array... [2.972s] Computing hash join... [5.765s] Masking low complexity seeds... [0.26s] Searching alignments... [839.875s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.298s] Building query seed array... [3.893s] Computing hash join... [5.681s] Masking low complexity seeds... [0.26s] Searching alignments... [345.287s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.137s] Building query seed array... [3.473s] Computing hash join... [5.842s] Masking low complexity seeds... [0.349s] Searching alignments... [265.619s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.269s] Building query seed array... [2.978s] Computing hash join... [5.715s] Masking low complexity seeds... [0.253s] Searching alignments... [260.264s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.23s] Building query seed array... [2.792s] Computing hash join... [5.751s] Masking low complexity seeds... [0.239s] Searching alignments... [380.327s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.111s] Building query seed array... [3.197s] Computing hash join... [5.63s] Masking low complexity seeds... [0.232s] Searching alignments... [299.96s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.967s] Building query seed array... [3.229s] Computing hash join... [6.04s] Masking low complexity seeds... [0.245s] Searching alignments... [216.703s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.842s] Building query seed array... [2.934s] Computing hash join... [5.565s] Masking low complexity seeds... [0.235s] Searching alignments... [225.148s] Deallocating memory... [0s] Deallocating buffers... [0.909s] Clearing query masking... [1.967s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [16.232s] Sorting trace points... [3.157s] Computing alignments... [102.588s] Deallocating buffers... [0.074s] Loading trace points... [0.094s] Sorting trace points... [3.308s] Computing alignments... [105.644s] Deallocating buffers... [0.063s] Loading trace points... [0.079s] Sorting trace points... [3.396s] Computing alignments... [102.974s] Deallocating buffers... [0.673s] Loading trace points... [0.033s] Sorting trace points... [3.828s] Computing alignments... [107.958s] Deallocating buffers... [0.202s] Loading trace points... [0.099s] Sorting trace points... [3.878s] Computing alignments... [105.012s] Deallocating buffers... [0.66s] Loading trace points... [0.054s] Sorting trace points... [3.216s] Computing alignments... [106.146s] Deallocating buffers... [0.064s] Loading trace points... [0.241s] Sorting trace points... [2.866s] Computing alignments... [107.508s] Deallocating buffers... [0.4s] Loading trace points... [0.043s] Sorting trace points... [2.471s] Computing alignments... [111.644s] Deallocating buffers... [0.221s] Loading trace points... [0.051s] Sorting trace points... [2.516s] Computing alignments... [106.948s] Deallocating buffers... [0.076s] Loading trace points... [0.113s] Sorting trace points... [3.004s] Computing alignments... [106.288s] Deallocating buffers... [0.329s] Loading trace points... [0.066s] Sorting trace points... [3.428s] Computing alignments... [104.807s] Deallocating buffers... [0.424s] Loading trace points... [0.055s] Sorting trace points... [2.984s] Computing alignments... [110.964s] Deallocating buffers... [0.061s] Loading trace points... [0.054s] Sorting trace points... [2.951s] Computing alignments... [107.558s] Deallocating buffers... [0.345s] Loading trace points... [0.052s] Sorting trace points... [3.962s] Computing alignments... [106.583s] Deallocating buffers... [0.642s] Loading trace points... [0.069s] Sorting trace points... [3.258s] Computing alignments... [107.568s] Deallocating buffers... [0.171s] Loading trace points... [0s] Sorting trace points... [3.165s] Computing alignments... [108.629s] Deallocating buffers... [0.433s] Loading trace points... [0s] [1782.53s] Deallocating reference... [0.074s] Loading reference sequences... [29.053s] Masking reference... [32.085s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.009s] Building reference histograms... [32.256s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.41s] Building query seed array... [2.853s] Computing hash join... [5.951s] Masking low complexity seeds... [0.256s] Searching alignments... [824.019s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.254s] Building query seed array... [3.92s] Computing hash join... [5.644s] Masking low complexity seeds... [0.245s] Searching alignments... [343.106s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.841s] Building query seed array... [3.689s] Computing hash join... [5.98s] Masking low complexity seeds... [0.266s] Searching alignments... [268.605s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.299s] Building query seed array... [3.079s] Computing hash join... [5.824s] Masking low complexity seeds... [0.268s] Searching alignments... [260.721s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.441s] Building query seed array... [2.646s] Computing hash join... [5.548s] Masking low complexity seeds... [0.251s] Searching alignments... [390.036s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.386s] Building query seed array... [3.31s] Computing hash join... [5.09s] Masking low complexity seeds... [0.24s] Searching alignments... [295.738s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.607s] Building query seed array... [3.445s] Computing hash join... [5.711s] Masking low complexity seeds... [0.258s] Searching alignments... [220.319s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.298s] Building query seed array... [2.986s] Computing hash join... [5.548s] Masking low complexity seeds... [0.247s] Searching alignments... [229.878s] Deallocating memory... [0s] Deallocating buffers... [1.532s] Clearing query masking... [2.035s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [16.424s] Sorting trace points... [2.997s] Computing alignments... [99.082s] Deallocating buffers... [0.056s] Loading trace points... [0.065s] Sorting trace points... [3.075s] Computing alignments... [100.555s] Deallocating buffers... [0.585s] Loading trace points... [0.078s] Sorting trace points... [2.367s] Computing alignments... [98.715s] Deallocating buffers... [0.061s] Loading trace points... [0.11s] Sorting trace points... [2.737s] Computing alignments... [103.599s] Deallocating buffers... [0.124s] Loading trace points... [0.06s] Sorting trace points... [3.628s] Computing alignments... [101.24s] Deallocating buffers... [0.594s] Loading trace points... [0.084s] Sorting trace points... [3.211s] Computing alignments... [101.266s] Deallocating buffers... [0.066s] Loading trace points... [0.071s] Sorting trace points... [3.93s] Computing alignments... [102.69s] Deallocating buffers... [0.794s] Loading trace points... [0.087s] Sorting trace points... [2.691s] Computing alignments... [106.245s] Deallocating buffers... [0.115s] Loading trace points... [0.078s] Sorting trace points... [2.934s] Computing alignments... [100.832s] Deallocating buffers... [0.606s] Loading trace points... [0.05s] Sorting trace points... [3.147s] Computing alignments... [102.139s] Deallocating buffers... [0.079s] Loading trace points... [0.091s] Sorting trace points... [3.563s] Computing alignments... [99.796s] Deallocating buffers... [0.551s] Loading trace points... [0.002s] Sorting trace points... [3.336s] Computing alignments... [107.04s] Deallocating buffers... [0.181s] Loading trace points... [0.041s] Sorting trace points... [3.548s] Computing alignments... [101.769s] Deallocating buffers... [0.727s] Loading trace points... [0.001s] Sorting trace points... [3.734s] Computing alignments... [101.928s] Deallocating buffers... [0.343s] Loading trace points... [0.086s] Sorting trace points... [3.699s] Computing alignments... [102.72s] Deallocating buffers... [0.634s] Loading trace points... [0s] Sorting trace points... [2.798s] Computing alignments... [104.396s] Deallocating buffers... [0.077s] Loading trace points... [0s] [1708.49s] Deallocating reference... [0.08s] Loading reference sequences... [29s] Masking reference... [30.863s] Initializing dictionary... [0.087s] Initializing temporary storage... [0.008s] Building reference histograms... [32.679s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.138s] Building query seed array... [2.952s] Computing hash join... [5.919s] Masking low complexity seeds... [0.289s] Searching alignments... [834.404s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.177s] Building query seed array... [3.635s] Computing hash join... [5.669s] Masking low complexity seeds... [0.25s] Searching alignments... [349.752s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.663s] Building query seed array... [3.543s] Computing hash join... [5.834s] Masking low complexity seeds... [0.269s] Searching alignments... [268.903s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.879s] Building query seed array... [2.923s] Computing hash join... [5.692s] Masking low complexity seeds... [0.277s] Searching alignments... [260.578s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.804s] Building query seed array... [2.745s] Computing hash join... [5.538s] Masking low complexity seeds... [0.244s] Searching alignments... [385.486s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.419s] Building query seed array... [2.945s] Computing hash join... [5.891s] Masking low complexity seeds... [0.24s] Searching alignments... [297.929s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.627s] Building query seed array... [3.341s] Computing hash join... [5.8s] Masking low complexity seeds... [0.247s] Searching alignments... [220.034s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.312s] Building query seed array... [2.802s] Computing hash join... [5.536s] Masking low complexity seeds... [0.239s] Searching alignments... [232.884s] Deallocating memory... [0s] Deallocating buffers... [1.305s] Clearing query masking... [1.924s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [16.444s] Sorting trace points... [3.366s] Computing alignments... [100.494s] Deallocating buffers... [0.296s] Loading trace points... [0.063s] Sorting trace points... [3.871s] Computing alignments... [102.759s] Deallocating buffers... [0.744s] Loading trace points... [0.002s] Sorting trace points... [3.211s] Computing alignments... [99.573s] Deallocating buffers... [0.121s] Loading trace points... [0.046s] Sorting trace points... [2.822s] Computing alignments... [105.029s] Deallocating buffers... [0.156s] Loading trace points... [0.063s] Sorting trace points... [3.318s] Computing alignments... [103.116s] Deallocating buffers... [0.599s] Loading trace points... [0.073s] Sorting trace points... [2.271s] Computing alignments... [104.3s] Deallocating buffers... [0.146s] Loading trace points... [0.068s] Sorting trace points... [3.284s] Computing alignments... [103.457s] Deallocating buffers... [0.216s] Loading trace points... [0.064s] Sorting trace points... [3.522s] Computing alignments... [107.369s] Deallocating buffers... [0.284s] Loading trace points... [0.073s] Sorting trace points... [2.686s] Computing alignments... [102.119s] Deallocating buffers... [0.359s] Loading trace points... [0.104s] Sorting trace points... [2.624s] Computing alignments... [102.977s] Deallocating buffers... [0.129s] Loading trace points... [0.069s] Sorting trace points... [3.322s] Computing alignments... [101.126s] Deallocating buffers... [0.54s] Loading trace points... [0.057s] Sorting trace points... [3.829s] Computing alignments... [107.469s] Deallocating buffers... [0.423s] Loading trace points... [0.056s] Sorting trace points... [2.741s] Computing alignments... [104.149s] Deallocating buffers... [0.128s] Loading trace points... [0.086s] Sorting trace points... [2.894s] Computing alignments... [102.022s] Deallocating buffers... [0.272s] Loading trace points... [0.09s] Sorting trace points... [2.543s] Computing alignments... [104.09s] Deallocating buffers... [0.09s] Loading trace points... [0s] Sorting trace points... [2.701s] Computing alignments... [105.31s] Deallocating buffers... [0.152s] Loading trace points... [0s] [1726.49s] Deallocating reference... [0.074s] Loading reference sequences... [29.366s] Masking reference... [30.896s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.575s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.386s] Building query seed array... [2.909s] Computing hash join... [5.716s] Masking low complexity seeds... [0.247s] Searching alignments... [831.286s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.765s] Building query seed array... [3.865s] Computing hash join... [6.028s] Masking low complexity seeds... [0.295s] Searching alignments... [346.346s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.123s] Building query seed array... [3.648s] Computing hash join... [5.855s] Masking low complexity seeds... [0.251s] Searching alignments... [264.702s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.182s] Building query seed array... [3.154s] Computing hash join... [5.776s] Masking low complexity seeds... [0.26s] Searching alignments... [261.827s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.398s] Building query seed array... [2.764s] Computing hash join... [5.733s] Masking low complexity seeds... [0.329s] Searching alignments... [382.409s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.671s] Building query seed array... [3.196s] Computing hash join... [5.839s] Masking low complexity seeds... [0.289s] Searching alignments... [301.528s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.589s] Building query seed array... [3.374s] Computing hash join... [5.698s] Masking low complexity seeds... [0.253s] Searching alignments... [219.169s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.31s] Building query seed array... [2.742s] Computing hash join... [5.926s] Masking low complexity seeds... [0.306s] Searching alignments... [226.379s] Deallocating memory... [0s] Deallocating buffers... [1.076s] Clearing query masking... [1.903s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.433s] Sorting trace points... [2.93s] Computing alignments... [90.761s] Deallocating buffers... [0.057s] Loading trace points... [0.089s] Sorting trace points... [2.325s] Computing alignments... [91.879s] Deallocating buffers... [0.098s] Loading trace points... [0.092s] Sorting trace points... [3.294s] Computing alignments... [91.212s] Deallocating buffers... [0.311s] Loading trace points... [0.089s] Sorting trace points... [3.708s] Computing alignments... [95.814s] Deallocating buffers... [0.327s] Loading trace points... [0.062s] Sorting trace points... [3.599s] Computing alignments... [91.916s] Deallocating buffers... [0.286s] Loading trace points... [0.081s] Sorting trace points... [3.035s] Computing alignments... [91.509s] Deallocating buffers... [0.234s] Loading trace points... [0.072s] Sorting trace points... [3.891s] Computing alignments... [93.197s] Deallocating buffers... [0.427s] Loading trace points... [0.074s] Sorting trace points... [4.128s] Computing alignments... [97.097s] Deallocating buffers... [0.653s] Loading trace points... [0.061s] Sorting trace points... [3.521s] Computing alignments... [92.255s] Deallocating buffers... [0.312s] Loading trace points... [0.091s] Sorting trace points... [3.254s] Computing alignments... [93.373s] Deallocating buffers... [0.076s] Loading trace points... [0.074s] Sorting trace points... [3.371s] Computing alignments... [92.741s] Deallocating buffers... [0.369s] Loading trace points... [0.074s] Sorting trace points... [2.96s] Computing alignments... [96.574s] Deallocating buffers... [0.291s] Loading trace points... [0.058s] Sorting trace points... [3.77s] Computing alignments... [93.082s] Deallocating buffers... [0.39s] Loading trace points... [0.078s] Sorting trace points... [3.149s] Computing alignments... [93.691s] Deallocating buffers... [0.099s] Loading trace points... [0.079s] Sorting trace points... [2.955s] Computing alignments... [93.732s] Deallocating buffers... [0.204s] Loading trace points... [0s] Sorting trace points... [3.273s] Computing alignments... [95.283s] Deallocating buffers... [0.174s] Loading trace points... [0s] [1570.25s] Deallocating reference... [0.061s] Loading reference sequences... [31.299s] Masking reference... [30.894s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.23s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.366s] Building query seed array... [2.984s] Computing hash join... [6.309s] Masking low complexity seeds... [0.335s] Searching alignments... [833.667s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.92s] Building query seed array... [3.742s] Computing hash join... [5.851s] Masking low complexity seeds... [0.255s] Searching alignments... [350.746s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.689s] Building query seed array... [3.533s] Computing hash join... [5.917s] Masking low complexity seeds... [0.264s] Searching alignments... [265.084s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.369s] Building query seed array... [2.939s] Computing hash join... [6.271s] Masking low complexity seeds... [0.321s] Searching alignments... [264.092s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.979s] Building query seed array... [2.712s] Computing hash join... [5.767s] Masking low complexity seeds... [0.251s] Searching alignments... [384.198s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.556s] Building query seed array... [3.185s] Computing hash join... [6.226s] Masking low complexity seeds... [0.297s] Searching alignments... [295.05s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.118s] Building query seed array... [3.329s] Computing hash join... [5.857s] Masking low complexity seeds... [0.248s] Searching alignments... [220.659s] Deallocating memory... [0.017s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.426s] Building query seed array... [2.882s] Computing hash join... [6.403s] Masking low complexity seeds... [0.253s] Searching alignments... [230.317s] Deallocating memory... [0s] Deallocating buffers... [1.26s] Clearing query masking... [1.903s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.669s] Sorting trace points... [2.503s] Computing alignments... [108.227s] Deallocating buffers... [0.117s] Loading trace points... [0.043s] Sorting trace points... [3.293s] Computing alignments... [111.495s] Deallocating buffers... [0.423s] Loading trace points... [1.04s] Sorting trace points... [2.589s] Computing alignments... [107.941s] Deallocating buffers... [0.189s] Loading trace points... [0.063s] Sorting trace points... [2.62s] Computing alignments... [113.782s] Deallocating buffers... [0.203s] Loading trace points... [0.049s] Sorting trace points... [2.584s] Computing alignments... [110.677s] Deallocating buffers... [0.209s] Loading trace points... [0.09s] Sorting trace points... [3.083s] Computing alignments... [111.489s] Deallocating buffers... [0.302s] Loading trace points... [0.049s] Sorting trace points... [2.639s] Computing alignments... [111.16s] Deallocating buffers... [0.096s] Loading trace points... [0.072s] Sorting trace points... [3.011s] Computing alignments... [116.467s] Deallocating buffers... [0.336s] Loading trace points... [0.071s] Sorting trace points... [2.489s] Computing alignments... [110.595s] Deallocating buffers... [0.1s] Loading trace points... [0.09s] Sorting trace points... [3.556s] Computing alignments... [111.037s] Deallocating buffers... [0.4s] Loading trace points... [0.052s] Sorting trace points... [2.933s] Computing alignments... [110.457s] Deallocating buffers... [0.33s] Loading trace points... [0.057s] Sorting trace points... [3.594s] Computing alignments... [116.447s] Deallocating buffers... [0.342s] Loading trace points... [0.083s] Sorting trace points... [3.364s] Computing alignments... [112.489s] Deallocating buffers... [0.398s] Loading trace points... [0.107s] Sorting trace points... [3.607s] Computing alignments... [110.348s] Deallocating buffers... [0.434s] Loading trace points... [0.043s] Sorting trace points... [2.471s] Computing alignments... [112.749s] Deallocating buffers... [0.099s] Loading trace points... [0s] Sorting trace points... [3.172s] Computing alignments... [114.251s] Deallocating buffers... [0.445s] Loading trace points... [0s] [1860.2s] Deallocating reference... [0.063s] Loading reference sequences... [258.605s] Masking reference... [30.913s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.87s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.371s] Building query seed array... [2.958s] Computing hash join... [5.944s] Masking low complexity seeds... [0.282s] Searching alignments... [831.474s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.423s] Building query seed array... [3.913s] Computing hash join... [5.825s] Masking low complexity seeds... [0.281s] Searching alignments... [350.785s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.59s] Building query seed array... [3.532s] Computing hash join... [5.544s] Masking low complexity seeds... [0.251s] Searching alignments... [270.224s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.26s] Building query seed array... [2.923s] Computing hash join... [5.876s] Masking low complexity seeds... [0.252s] Searching alignments... [265.86s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.292s] Building query seed array... [2.753s] Computing hash join... [5.895s] Masking low complexity seeds... [0.247s] Searching alignments... [386.361s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.412s] Building query seed array... [3.251s] Computing hash join... [5.564s] Masking low complexity seeds... [0.268s] Searching alignments... [297.872s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.751s] Building query seed array... [3.324s] Computing hash join... [5.734s] Masking low complexity seeds... [0.269s] Searching alignments... [220.63s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.346s] Building query seed array... [2.961s] Computing hash join... [5.359s] Masking low complexity seeds... [0.231s] Searching alignments... [229.624s] Deallocating memory... [0s] Deallocating buffers... [1.41s] Clearing query masking... [1.864s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.255s] Sorting trace points... [3.291s] Computing alignments... [105.127s] Deallocating buffers... [0.192s] Loading trace points... [0.07s] Sorting trace points... [3.927s] Computing alignments... [108.253s] Deallocating buffers... [0.516s] Loading trace points... [0.076s] Sorting trace points... [2.437s] Computing alignments... [104.617s] Deallocating buffers... [0.087s] Loading trace points... [0.001s] Sorting trace points... [2.774s] Computing alignments... [109.235s] Deallocating buffers... [0.22s] Loading trace points... [0.074s] Sorting trace points... [3.678s] Computing alignments... [107.089s] Deallocating buffers... [0.398s] Loading trace points... [0.112s] Sorting trace points... [2.547s] Computing alignments... [108.631s] Deallocating buffers... [0.145s] Loading trace points... [0.067s] Sorting trace points... [3.759s] Computing alignments... [109.641s] Deallocating buffers... [0.254s] Loading trace points... [0.073s] Sorting trace points... [2.741s] Computing alignments... [113.382s] Deallocating buffers... [0.271s] Loading trace points... [0.047s] Sorting trace points... [2.733s] Computing alignments... [108.066s] Deallocating buffers... [0.202s] Loading trace points... [0.08s] Sorting trace points... [3.262s] Computing alignments... [108.056s] Deallocating buffers... [0.429s] Loading trace points... [0.061s] Sorting trace points... [3.969s] Computing alignments... [106.747s] Deallocating buffers... [0.49s] Loading trace points... [0.083s] Sorting trace points... [3.513s] Computing alignments... [113.322s] Deallocating buffers... [0.505s] Loading trace points... [0.092s] Sorting trace points... [2.801s] Computing alignments... [109.344s] Deallocating buffers... [0.123s] Loading trace points... [0.07s] Sorting trace points... [2.481s] Computing alignments... [107.619s] Deallocating buffers... [0.122s] Loading trace points... [0.065s] Sorting trace points... [2.923s] Computing alignments... [109.492s] Deallocating buffers... [0.201s] Loading trace points... [0s] Sorting trace points... [2.903s] Computing alignments... [111.056s] Deallocating buffers... [0.241s] Loading trace points... [0s] [1812.17s] Deallocating reference... [0.07s] Loading reference sequences... [29.521s] Masking reference... [30.93s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.006s] Building reference histograms... [32.676s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.396s] Building query seed array... [2.978s] Computing hash join... [6.731s] Masking low complexity seeds... [0.291s] Searching alignments... [842.106s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.573s] Building query seed array... [3.811s] Computing hash join... [5.611s] Masking low complexity seeds... [0.243s] Searching alignments... [347.17s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.81s] Building query seed array... [3.499s] Computing hash join... [5.282s] Masking low complexity seeds... [0.262s] Searching alignments... [266.455s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.618s] Building query seed array... [3.071s] Computing hash join... [5.624s] Masking low complexity seeds... [0.284s] Searching alignments... [260.626s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.971s] Building query seed array... [2.721s] Computing hash join... [5.255s] Masking low complexity seeds... [0.259s] Searching alignments... [391.725s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.723s] Building query seed array... [3.047s] Computing hash join... [6.045s] Masking low complexity seeds... [0.314s] Searching alignments... [300.976s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.931s] Building query seed array... [3.356s] Computing hash join... [5.175s] Masking low complexity seeds... [0.254s] Searching alignments... [219.295s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.764s] Building query seed array... [2.817s] Computing hash join... [5.483s] Masking low complexity seeds... [0.273s] Searching alignments... [228.502s] Deallocating memory... [0s] Deallocating buffers... [2.154s] Clearing query masking... [1.877s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.315s] Sorting trace points... [3.3s] Computing alignments... [98.417s] Deallocating buffers... [0.055s] Loading trace points... [0.115s] Sorting trace points... [3.265s] Computing alignments... [101.325s] Deallocating buffers... [0.51s] Loading trace points... [0.045s] Sorting trace points... [3.496s] Computing alignments... [99.113s] Deallocating buffers... [0.177s] Loading trace points... [0.081s] Sorting trace points... [2.968s] Computing alignments... [103.803s] Deallocating buffers... [0.277s] Loading trace points... [0.088s] Sorting trace points... [2.582s] Computing alignments... [100.899s] Deallocating buffers... [0.348s] Loading trace points... [0.052s] Sorting trace points... [2.701s] Computing alignments... [101.317s] Deallocating buffers... [0.138s] Loading trace points... [0.083s] Sorting trace points... [2.833s] Computing alignments... [101.738s] Deallocating buffers... [0.164s] Loading trace points... [0.059s] Sorting trace points... [3.927s] Computing alignments... [105.821s] Deallocating buffers... [0.352s] Loading trace points... [0.079s] Sorting trace points... [2.901s] Computing alignments... [102.03s] Deallocating buffers... [0.076s] Loading trace points... [1.232s] Sorting trace points... [3.394s] Computing alignments... [101.592s] Deallocating buffers... [0.209s] Loading trace points... [0.101s] Sorting trace points... [3.685s] Computing alignments... [101.192s] Deallocating buffers... [0.379s] Loading trace points... [0.048s] Sorting trace points... [3.898s] Computing alignments... [106.565s] Deallocating buffers... [0.277s] Loading trace points... [0.062s] Sorting trace points... [3.699s] Computing alignments... [102.435s] Deallocating buffers... [0.732s] Loading trace points... [0.121s] Sorting trace points... [2.877s] Computing alignments... [101.963s] Deallocating buffers... [0.155s] Loading trace points... [0.089s] Sorting trace points... [3.493s] Computing alignments... [102.908s] Deallocating buffers... [0.308s] Loading trace points... [0s] Sorting trace points... [3.876s] Computing alignments... [104.409s] Deallocating buffers... [0.682s] Loading trace points... [0s] [1711.99s] Deallocating reference... [0.07s] Loading reference sequences... [26.185s] Masking reference... [26.016s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.005s] Building reference histograms... [26.419s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.548s] Building query seed array... [2.873s] Computing hash join... [4.506s] Masking low complexity seeds... [0.229s] Searching alignments... [673.003s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.354s] Building query seed array... [3.226s] Computing hash join... [4.433s] Masking low complexity seeds... [0.238s] Searching alignments... [279.099s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.234s] Building query seed array... [3.371s] Computing hash join... [4.88s] Masking low complexity seeds... [0.239s] Searching alignments... [216.839s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.296s] Building query seed array... [2.734s] Computing hash join... [4.65s] Masking low complexity seeds... [0.241s] Searching alignments... [214.589s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.242s] Building query seed array... [2.507s] Computing hash join... [4.558s] Masking low complexity seeds... [0.227s] Searching alignments... [305.2s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.676s] Building query seed array... [2.882s] Computing hash join... [4.245s] Masking low complexity seeds... [0.217s] Searching alignments... [237.932s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.88s] Building query seed array... [3.111s] Computing hash join... [4.548s] Masking low complexity seeds... [0.228s] Searching alignments... [176.959s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.888s] Building query seed array... [2.593s] Computing hash join... [4.647s] Masking low complexity seeds... [0.223s] Searching alignments... [184.12s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.973s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.228s] Sorting trace points... [2.666s] Computing alignments... [77.004s] Deallocating buffers... [0.054s] Loading trace points... [0.069s] Sorting trace points... [2.5s] Computing alignments... [79.145s] Deallocating buffers... [0.366s] Loading trace points... [0.049s] Sorting trace points... [2.704s] Computing alignments... [77.59s] Deallocating buffers... [0.052s] Loading trace points... [0.099s] Sorting trace points... [3.129s] Computing alignments... [81.497s] Deallocating buffers... [0.403s] Loading trace points... [0.06s] Sorting trace points... [2.618s] Computing alignments... [79.221s] Deallocating buffers... [0.077s] Loading trace points... [0.091s] Sorting trace points... [2.25s] Computing alignments... [79.339s] Deallocating buffers... [0.254s] Loading trace points... [0.029s] Sorting trace points... [2.24s] Computing alignments... [79.167s] Deallocating buffers... [0.054s] Loading trace points... [0.092s] Sorting trace points... [3.05s] Computing alignments... [83.332s] Deallocating buffers... [0.217s] Loading trace points... [0.089s] Sorting trace points... [1.903s] Computing alignments... [78.679s] Deallocating buffers... [0.057s] Loading trace points... [0.065s] Sorting trace points... [2.715s] Computing alignments... [79.224s] Deallocating buffers... [0.052s] Loading trace points... [0.073s] Sorting trace points... [2.246s] Computing alignments... [78.717s] Deallocating buffers... [0.052s] Loading trace points... [0.04s] Sorting trace points... [2.04s] Computing alignments... [83.033s] Deallocating buffers... [0.06s] Loading trace points... [0.06s] Sorting trace points... [2.966s] Computing alignments... [79.744s] Deallocating buffers... [0.277s] Loading trace points... [0.094s] Sorting trace points... [3.046s] Computing alignments... [79.294s] Deallocating buffers... [0.391s] Loading trace points... [0.093s] Sorting trace points... [2.691s] Computing alignments... [80.293s] Deallocating buffers... [0.183s] Loading trace points... [0s] Sorting trace points... [2.392s] Computing alignments... [81.66s] Deallocating buffers... [0.057s] Loading trace points... [0s] [1335.03s] Deallocating reference... [0.07s] Loading reference sequences... [0.088s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [6535.36s] [6535.36s] Deallocating queries... [0.114s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.32s] [4.301s] Closing the database... [0s] Cleaning up... [0s] Total time = 74322s Reported 6552637527 pairwise alignments, 6552637527 HSPs. 8073779 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-38.trimmed.R1.fastq.gz complete: CH01-38.trimmed.R1.blastx.meganized.daa Now MEGANizing CH01-38.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH01-38.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (353.9s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9,920.7s) Total reads: 8,073,779 With hits: 8,073,779 Alignments: 4,578,590,722 Assig. Taxonomy: 4,271,704 Assig. SEED: 172,019 Assig. EGGNOG: 53,976 Assig. GTDB: 344,835 Assig. EC: 712,188 Assig. INTERPRO2GO: 1,928,950 MinSupport set to: 4036 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 6,435 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (30.6s) Min-supp. changes: 4,629 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (13.0s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 167 Class. SEED: 505 Class. EGGNOG: 1,694 Class. GTDB: 44 Class. EC: 2,398 Class. INTERPRO2GO: 8,919 Total time: 10,328s Peak memory: 36.7 of 195.3G MEGANization of CH01-38.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-38.trimmed.R2.fastq.gz... ca3865e9ff3ab36bce6fc279e46975dd /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-38.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-38.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.326s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.739s] Opening the output file... [0s] Loading query sequences... [122.224s] Masking queries... [32.875s] Algorithm: Double-indexed Building query histograms... [25.26s] Loading reference sequences... [29.103s] Masking reference... [32.064s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.109s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.133s] Building query seed array... [2.859s] Computing hash join... [6.551s] Masking low complexity seeds... [0.454s] Searching alignments... [885.796s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.271s] Building query seed array... [3.658s] Computing hash join... [5.73s] Masking low complexity seeds... [0.265s] Searching alignments... [360.721s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.148s] Building query seed array... [3.66s] Computing hash join... [5.96s] Masking low complexity seeds... [0.316s] Searching alignments... [280.279s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.524s] Building query seed array... [2.99s] Computing hash join... [5.27s] Masking low complexity seeds... [0.278s] Searching alignments... [274.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.076s] Building query seed array... [2.936s] Computing hash join... [5.041s] Masking low complexity seeds... [0.241s] Searching alignments... [412.935s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.576s] Building query seed array... [3.072s] Computing hash join... [5.795s] Masking low complexity seeds... [0.243s] Searching alignments... [320.284s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.331s] Building query seed array... [3.258s] Computing hash join... [5.189s] Masking low complexity seeds... [0.226s] Searching alignments... [232.215s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.452s] Building query seed array... [2.958s] Computing hash join... [5.565s] Masking low complexity seeds... [0.255s] Searching alignments... [242.958s] Deallocating memory... [0s] Deallocating buffers... [1.682s] Clearing query masking... [1.91s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [16.725s] Sorting trace points... [3.253s] Computing alignments... [99.075s] Deallocating buffers... [0.121s] Loading trace points... [0.089s] Sorting trace points... [3.407s] Computing alignments... [100.285s] Deallocating buffers... [0.059s] Loading trace points... [0.115s] Sorting trace points... [3.715s] Computing alignments... [100.438s] Deallocating buffers... [0.56s] Loading trace points... [0.038s] Sorting trace points... [2.572s] Computing alignments... [104.789s] Deallocating buffers... [0.045s] Loading trace points... [0.079s] Sorting trace points... [4.092s] Computing alignments... [99.967s] Deallocating buffers... [0.719s] Loading trace points... [0.094s] Sorting trace points... [3.652s] Computing alignments... [100.898s] Deallocating buffers... [0.281s] Loading trace points... [0.073s] Sorting trace points... [2.769s] Computing alignments... [101.5s] Deallocating buffers... [0.053s] Loading trace points... [0.056s] Sorting trace points... [2.783s] Computing alignments... [103.667s] Deallocating buffers... [0.067s] Loading trace points... [0.048s] Sorting trace points... [2.922s] Computing alignments... [100.044s] Deallocating buffers... [0.214s] Loading trace points... [0.043s] Sorting trace points... [3.838s] Computing alignments... [101.804s] Deallocating buffers... [0.346s] Loading trace points... [0.002s] Sorting trace points... [3.793s] Computing alignments... [101.96s] Deallocating buffers... [0.527s] Loading trace points... [0.105s] Sorting trace points... [4.212s] Computing alignments... [102.322s] Deallocating buffers... [0.379s] Loading trace points... [0.001s] Sorting trace points... [3.079s] Computing alignments... [101.034s] Deallocating buffers... [0.258s] Loading trace points... [0.074s] Sorting trace points... [3.053s] Computing alignments... [102.86s] Deallocating buffers... [0.222s] Loading trace points... [0.068s] Sorting trace points... [3.22s] Computing alignments... [101.224s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [3.552s] Computing alignments... [100.175s] Deallocating buffers... [0.6s] Loading trace points... [0s] [1698.2s] Deallocating reference... [0.065s] Loading reference sequences... [29.401s] Masking reference... [30.99s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.655s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.404s] Building query seed array... [2.908s] Computing hash join... [6.34s] Masking low complexity seeds... [0.265s] Searching alignments... [866.044s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.92s] Building query seed array... [3.744s] Computing hash join... [5.813s] Masking low complexity seeds... [0.28s] Searching alignments... [364.108s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.7s] Building query seed array... [3.608s] Computing hash join... [5.433s] Masking low complexity seeds... [0.243s] Searching alignments... [275.956s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.2s] Building query seed array... [2.99s] Computing hash join... [5.653s] Masking low complexity seeds... [0.25s] Searching alignments... [275.754s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.223s] Building query seed array... [2.717s] Computing hash join... [5.109s] Masking low complexity seeds... [0.245s] Searching alignments... [400.584s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.727s] Building query seed array... [3.129s] Computing hash join... [6.119s] Masking low complexity seeds... [0.264s] Searching alignments... [309.614s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.357s] Building query seed array... [3.135s] Computing hash join... [5.172s] Masking low complexity seeds... [0.247s] Searching alignments... [226.149s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.576s] Building query seed array... [2.911s] Computing hash join... [5.808s] Masking low complexity seeds... [0.233s] Searching alignments... [237.201s] Deallocating memory... [0s] Deallocating buffers... [1.804s] Clearing query masking... [1.902s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.945s] Sorting trace points... [3.334s] Computing alignments... [103.389s] Deallocating buffers... [0.224s] Loading trace points... [0.122s] Sorting trace points... [3.083s] Computing alignments... [103.905s] Deallocating buffers... [0.428s] Loading trace points... [0.074s] Sorting trace points... [2.44s] Computing alignments... [105.625s] Deallocating buffers... [0.096s] Loading trace points... [1.155s] Sorting trace points... [2.671s] Computing alignments... [109.117s] Deallocating buffers... [0.254s] Loading trace points... [0.069s] Sorting trace points... [2.992s] Computing alignments... [103.971s] Deallocating buffers... [0.285s] Loading trace points... [0.041s] Sorting trace points... [2.5s] Computing alignments... [106.304s] Deallocating buffers... [0.096s] Loading trace points... [0.087s] Sorting trace points... [3.45s] Computing alignments... [106.307s] Deallocating buffers... [0.145s] Loading trace points... [0.05s] Sorting trace points... [2.721s] Computing alignments... [108.221s] Deallocating buffers... [0.111s] Loading trace points... [0.056s] Sorting trace points... [3.312s] Computing alignments... [103.701s] Deallocating buffers... [0.51s] Loading trace points... [0.071s] Sorting trace points... [3.418s] Computing alignments... [106.069s] Deallocating buffers... [0.276s] Loading trace points... [0.053s] Sorting trace points... [2.708s] Computing alignments... [107.408s] Deallocating buffers... [0.216s] Loading trace points... [0.001s] Sorting trace points... [3.683s] Computing alignments... [106.747s] Deallocating buffers... [0.394s] Loading trace points... [0.048s] Sorting trace points... [2.868s] Computing alignments... [105.979s] Deallocating buffers... [0.343s] Loading trace points... [0.106s] Sorting trace points... [2.558s] Computing alignments... [106.426s] Deallocating buffers... [0.086s] Loading trace points... [0.095s] Sorting trace points... [2.745s] Computing alignments... [106.188s] Deallocating buffers... [0.192s] Loading trace points... [0s] Sorting trace points... [3.016s] Computing alignments... [104.503s] Deallocating buffers... [0.281s] Loading trace points... [0s] [1764.44s] Deallocating reference... [0.069s] Loading reference sequences... [30.35s] Masking reference... [31.865s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.412s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.556s] Building query seed array... [2.98s] Computing hash join... [6.136s] Masking low complexity seeds... [0.249s] Searching alignments... [866.174s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.746s] Building query seed array... [3.896s] Computing hash join... [5.948s] Masking low complexity seeds... [0.244s] Searching alignments... [364.641s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.518s] Building query seed array... [3.503s] Computing hash join... [6.234s] Masking low complexity seeds... [0.261s] Searching alignments... [275.154s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.567s] Building query seed array... [3.022s] Computing hash join... [5.69s] Masking low complexity seeds... [0.255s] Searching alignments... [269.829s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.36s] Building query seed array... [2.672s] Computing hash join... [5.566s] Masking low complexity seeds... [0.24s] Searching alignments... [403.685s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.488s] Building query seed array... [3.287s] Computing hash join... [5.432s] Masking low complexity seeds... [0.228s] Searching alignments... [313.023s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.35s] Building query seed array... [3.344s] Computing hash join... [5.313s] Masking low complexity seeds... [0.233s] Searching alignments... [227.136s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.281s] Building query seed array... [2.939s] Computing hash join... [5.453s] Masking low complexity seeds... [0.244s] Searching alignments... [239.132s] Deallocating memory... [0s] Deallocating buffers... [1.385s] Clearing query masking... [1.957s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.579s] Sorting trace points... [3.363s] Computing alignments... [103.598s] Deallocating buffers... [0.103s] Loading trace points... [0.05s] Sorting trace points... [3.669s] Computing alignments... [103.572s] Deallocating buffers... [0.769s] Loading trace points... [0.062s] Sorting trace points... [2.825s] Computing alignments... [105.039s] Deallocating buffers... [0.102s] Loading trace points... [0.096s] Sorting trace points... [3.326s] Computing alignments... [108.804s] Deallocating buffers... [0.116s] Loading trace points... [1.164s] Sorting trace points... [2.51s] Computing alignments... [103.79s] Deallocating buffers... [0.253s] Loading trace points... [0.07s] Sorting trace points... [3.346s] Computing alignments... [105.158s] Deallocating buffers... [0.099s] Loading trace points... [0.075s] Sorting trace points... [3.836s] Computing alignments... [105.11s] Deallocating buffers... [0.566s] Loading trace points... [0.077s] Sorting trace points... [2.667s] Computing alignments... [107.292s] Deallocating buffers... [0.117s] Loading trace points... [0.101s] Sorting trace points... [3.577s] Computing alignments... [102.704s] Deallocating buffers... [0.339s] Loading trace points... [0.073s] Sorting trace points... [3.522s] Computing alignments... [105.561s] Deallocating buffers... [0.296s] Loading trace points... [0.061s] Sorting trace points... [3.466s] Computing alignments... [106.557s] Deallocating buffers... [0.099s] Loading trace points... [0.052s] Sorting trace points... [3.23s] Computing alignments... [107.394s] Deallocating buffers... [0.478s] Loading trace points... [0.079s] Sorting trace points... [2.485s] Computing alignments... [105.418s] Deallocating buffers... [0.102s] Loading trace points... [0.074s] Sorting trace points... [3.309s] Computing alignments... [107.019s] Deallocating buffers... [0.402s] Loading trace points... [0.055s] Sorting trace points... [3.097s] Computing alignments... [104.891s] Deallocating buffers... [0.1s] Loading trace points... [0s] Sorting trace points... [2.969s] Computing alignments... [104.511s] Deallocating buffers... [0.193s] Loading trace points... [0s] [1760.56s] Deallocating reference... [0.064s] Loading reference sequences... [29.849s] Masking reference... [32.135s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.883s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.161s] Building query seed array... [2.909s] Computing hash join... [6.034s] Masking low complexity seeds... [0.24s] Searching alignments... [878.175s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.858s] Building query seed array... [3.576s] Computing hash join... [5.748s] Masking low complexity seeds... [0.26s] Searching alignments... [363.441s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.617s] Building query seed array... [3.616s] Computing hash join... [5.441s] Masking low complexity seeds... [0.244s] Searching alignments... [272.856s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.322s] Building query seed array... [3.168s] Computing hash join... [5.722s] Masking low complexity seeds... [0.272s] Searching alignments... [271.889s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.347s] Building query seed array... [2.841s] Computing hash join... [5.533s] Masking low complexity seeds... [0.263s] Searching alignments... [414.082s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.63s] Building query seed array... [3.171s] Computing hash join... [5.811s] Masking low complexity seeds... [0.271s] Searching alignments... [316.773s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.522s] Building query seed array... [3.495s] Computing hash join... [5.42s] Masking low complexity seeds... [0.248s] Searching alignments... [230.561s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.373s] Building query seed array... [2.868s] Computing hash join... [5.905s] Masking low complexity seeds... [0.293s] Searching alignments... [238.62s] Deallocating memory... [0s] Deallocating buffers... [1.431s] Clearing query masking... [1.916s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.568s] Sorting trace points... [3.302s] Computing alignments... [101.397s] Deallocating buffers... [0.067s] Loading trace points... [0.07s] Sorting trace points... [3.474s] Computing alignments... [101.747s] Deallocating buffers... [0.568s] Loading trace points... [0.054s] Sorting trace points... [3.005s] Computing alignments... [103.868s] Deallocating buffers... [0.198s] Loading trace points... [0.072s] Sorting trace points... [3.347s] Computing alignments... [106.277s] Deallocating buffers... [0.438s] Loading trace points... [0.117s] Sorting trace points... [3.581s] Computing alignments... [101.641s] Deallocating buffers... [0.337s] Loading trace points... [0.094s] Sorting trace points... [3.669s] Computing alignments... [103.223s] Deallocating buffers... [0.458s] Loading trace points... [0.105s] Sorting trace points... [3.439s] Computing alignments... [103.828s] Deallocating buffers... [0.155s] Loading trace points... [0.083s] Sorting trace points... [3.502s] Computing alignments... [105.287s] Deallocating buffers... [0.076s] Loading trace points... [0.075s] Sorting trace points... [3.315s] Computing alignments... [101.451s] Deallocating buffers... [0.168s] Loading trace points... [0.08s] Sorting trace points... [3.1s] Computing alignments... [104.194s] Deallocating buffers... [0.071s] Loading trace points... [0.067s] Sorting trace points... [3.002s] Computing alignments... [104.121s] Deallocating buffers... [0.201s] Loading trace points... [0.053s] Sorting trace points... [3.417s] Computing alignments... [103.943s] Deallocating buffers... [0.426s] Loading trace points... [0.06s] Sorting trace points... [3.455s] Computing alignments... [103.251s] Deallocating buffers... [0.263s] Loading trace points... [0.075s] Sorting trace points... [3.139s] Computing alignments... [104.058s] Deallocating buffers... [0.058s] Loading trace points... [0.064s] Sorting trace points... [3.931s] Computing alignments... [103.285s] Deallocating buffers... [0.762s] Loading trace points... [0s] Sorting trace points... [2.486s] Computing alignments... [101.741s] Deallocating buffers... [0.07s] Loading trace points... [0s] [1729.38s] Deallocating reference... [0.077s] Loading reference sequences... [248.102s] Masking reference... [30.889s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.7s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.382s] Building query seed array... [2.941s] Computing hash join... [5.691s] Masking low complexity seeds... [0.245s] Searching alignments... [865.876s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.716s] Building query seed array... [3.852s] Computing hash join... [5.952s] Masking low complexity seeds... [0.277s] Searching alignments... [359.005s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.454s] Building query seed array... [3.66s] Computing hash join... [5.65s] Masking low complexity seeds... [0.249s] Searching alignments... [277.76s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.971s] Building query seed array... [2.967s] Computing hash join... [5.5s] Masking low complexity seeds... [0.236s] Searching alignments... [268.752s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.964s] Building query seed array... [2.724s] Computing hash join... [5.313s] Masking low complexity seeds... [0.233s] Searching alignments... [405.087s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.614s] Building query seed array... [3.101s] Computing hash join... [5.726s] Masking low complexity seeds... [0.315s] Searching alignments... [311.731s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.257s] Building query seed array... [3.26s] Computing hash join... [5.414s] Masking low complexity seeds... [0.273s] Searching alignments... [228.664s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.205s] Building query seed array... [2.885s] Computing hash join... [5.543s] Masking low complexity seeds... [0.241s] Searching alignments... [238.936s] Deallocating memory... [0s] Deallocating buffers... [1.14s] Clearing query masking... [2.02s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.59s] Sorting trace points... [3.329s] Computing alignments... [107.847s] Deallocating buffers... [0.132s] Loading trace points... [0.063s] Sorting trace points... [3.158s] Computing alignments... [108.146s] Deallocating buffers... [0.36s] Loading trace points... [0.071s] Sorting trace points... [2.71s] Computing alignments... [109.103s] Deallocating buffers... [0.265s] Loading trace points... [0.053s] Sorting trace points... [2.499s] Computing alignments... [113.235s] Deallocating buffers... [0.119s] Loading trace points... [0.084s] Sorting trace points... [2.603s] Computing alignments... [108.272s] Deallocating buffers... [0.126s] Loading trace points... [0.06s] Sorting trace points... [2.481s] Computing alignments... [110.087s] Deallocating buffers... [0.21s] Loading trace points... [0.055s] Sorting trace points... [2.981s] Computing alignments... [110.914s] Deallocating buffers... [0.274s] Loading trace points... [0.057s] Sorting trace points... [2.66s] Computing alignments... [113.683s] Deallocating buffers... [0.09s] Loading trace points... [0.059s] Sorting trace points... [3.089s] Computing alignments... [107.938s] Deallocating buffers... [0.365s] Loading trace points... [0.066s] Sorting trace points... [2.748s] Computing alignments... [110.335s] Deallocating buffers... [0.094s] Loading trace points... [0.057s] Sorting trace points... [2.36s] Computing alignments... [111.204s] Deallocating buffers... [0.127s] Loading trace points... [0.058s] Sorting trace points... [2.717s] Computing alignments... [112.333s] Deallocating buffers... [0.085s] Loading trace points... [0.074s] Sorting trace points... [3.688s] Computing alignments... [109.901s] Deallocating buffers... [0.445s] Loading trace points... [0.059s] Sorting trace points... [2.462s] Computing alignments... [111.908s] Deallocating buffers... [0.229s] Loading trace points... [0.1s] Sorting trace points... [2.622s] Computing alignments... [109.497s] Deallocating buffers... [0.105s] Loading trace points... [0s] Sorting trace points... [3.039s] Computing alignments... [108.748s] Deallocating buffers... [0.257s] Loading trace points... [0s] [1829.24s] Deallocating reference... [0.071s] Loading reference sequences... [255.487s] Masking reference... [31.498s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.446s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.955s] Building query seed array... [2.986s] Computing hash join... [5.716s] Masking low complexity seeds... [0.249s] Searching alignments... [863.76s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.139s] Building query seed array... [3.752s] Computing hash join... [5.953s] Masking low complexity seeds... [0.253s] Searching alignments... [361.503s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.509s] Building query seed array... [3.544s] Computing hash join... [5.754s] Masking low complexity seeds... [0.252s] Searching alignments... [270.858s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.068s] Building query seed array... [2.975s] Computing hash join... [5.418s] Masking low complexity seeds... [0.257s] Searching alignments... [268.88s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.236s] Building query seed array... [2.725s] Computing hash join... [5.454s] Masking low complexity seeds... [0.248s] Searching alignments... [405.758s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.332s] Building query seed array... [3.186s] Computing hash join... [5.274s] Masking low complexity seeds... [0.256s] Searching alignments... [312.68s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.867s] Building query seed array... [3.284s] Computing hash join... [5.523s] Masking low complexity seeds... [0.259s] Searching alignments... [226.096s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.444s] Building query seed array... [2.88s] Computing hash join... [5.376s] Masking low complexity seeds... [0.241s] Searching alignments... [237.144s] Deallocating memory... [0s] Deallocating buffers... [1.024s] Clearing query masking... [1.929s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.541s] Sorting trace points... [3.233s] Computing alignments... [104.359s] Deallocating buffers... [0.063s] Loading trace points... [0.09s] Sorting trace points... [3.941s] Computing alignments... [103.55s] Deallocating buffers... [0.666s] Loading trace points... [0.068s] Sorting trace points... [3.254s] Computing alignments... [106.041s] Deallocating buffers... [0.096s] Loading trace points... [0.041s] Sorting trace points... [3.449s] Computing alignments... [110.377s] Deallocating buffers... [0.041s] Loading trace points... [0.059s] Sorting trace points... [2.744s] Computing alignments... [104.991s] Deallocating buffers... [0.352s] Loading trace points... [0.102s] Sorting trace points... [3.353s] Computing alignments... [106.207s] Deallocating buffers... [0.114s] Loading trace points... [0.083s] Sorting trace points... [3.163s] Computing alignments... [107.992s] Deallocating buffers... [0.086s] Loading trace points... [0.042s] Sorting trace points... [3.618s] Computing alignments... [109.06s] Deallocating buffers... [0.201s] Loading trace points... [0.055s] Sorting trace points... [3.464s] Computing alignments... [104.297s] Deallocating buffers... [0.613s] Loading trace points... [0.054s] Sorting trace points... [2.912s] Computing alignments... [105.71s] Deallocating buffers... [0.052s] Loading trace points... [0.081s] Sorting trace points... [3.842s] Computing alignments... [106.897s] Deallocating buffers... [0.572s] Loading trace points... [0.106s] Sorting trace points... [3.52s] Computing alignments... [107.84s] Deallocating buffers... [0.269s] Loading trace points... [0.097s] Sorting trace points... [3.638s] Computing alignments... [106.645s] Deallocating buffers... [0.679s] Loading trace points... [0.954s] Sorting trace points... [2.915s] Computing alignments... [107.919s] Deallocating buffers... [0.069s] Loading trace points... [0.069s] Sorting trace points... [3.628s] Computing alignments... [106.456s] Deallocating buffers... [0.504s] Loading trace points... [0s] Sorting trace points... [3.069s] Computing alignments... [105.804s] Deallocating buffers... [0.066s] Loading trace points... [0s] [1780.94s] Deallocating reference... [0.066s] Loading reference sequences... [34.878s] Masking reference... [30.875s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.581s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.181s] Building query seed array... [2.822s] Computing hash join... [6.46s] Masking low complexity seeds... [0.306s] Searching alignments... [868.255s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.776s] Building query seed array... [3.65s] Computing hash join... [5.926s] Masking low complexity seeds... [0.248s] Searching alignments... [355.888s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.341s] Building query seed array... [3.62s] Computing hash join... [5.468s] Masking low complexity seeds... [0.269s] Searching alignments... [274.013s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.533s] Building query seed array... [2.979s] Computing hash join... [5.266s] Masking low complexity seeds... [0.254s] Searching alignments... [268.312s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.401s] Building query seed array... [2.838s] Computing hash join... [5.8s] Masking low complexity seeds... [0.232s] Searching alignments... [401.017s] Deallocating memory... [0.004s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.388s] Building query seed array... [3.066s] Computing hash join... [6.047s] Masking low complexity seeds... [0.26s] Searching alignments... [312.934s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.86s] Building query seed array... [3.404s] Computing hash join... [5.589s] Masking low complexity seeds... [0.234s] Searching alignments... [226.133s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.322s] Building query seed array... [2.901s] Computing hash join... [5.15s] Masking low complexity seeds... [0.235s] Searching alignments... [242.365s] Deallocating memory... [0s] Deallocating buffers... [1.519s] Clearing query masking... [1.914s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.381s] Sorting trace points... [3.282s] Computing alignments... [105.266s] Deallocating buffers... [0.067s] Loading trace points... [0.096s] Sorting trace points... [2.761s] Computing alignments... [104.95s] Deallocating buffers... [0.34s] Loading trace points... [0.064s] Sorting trace points... [2.858s] Computing alignments... [106.039s] Deallocating buffers... [0.066s] Loading trace points... [0.124s] Sorting trace points... [3.871s] Computing alignments... [110.522s] Deallocating buffers... [0.399s] Loading trace points... [0.068s] Sorting trace points... [2.451s] Computing alignments... [105.491s] Deallocating buffers... [0.095s] Loading trace points... [0.088s] Sorting trace points... [2.584s] Computing alignments... [108.087s] Deallocating buffers... [0.093s] Loading trace points... [0.157s] Sorting trace points... [3.338s] Computing alignments... [108.869s] Deallocating buffers... [0.315s] Loading trace points... [0.053s] Sorting trace points... [2.663s] Computing alignments... [110.055s] Deallocating buffers... [0.149s] Loading trace points... [0.071s] Sorting trace points... [2.982s] Computing alignments... [105.215s] Deallocating buffers... [0.185s] Loading trace points... [0.308s] Sorting trace points... [3.234s] Computing alignments... [107.232s] Deallocating buffers... [0.213s] Loading trace points... [0.066s] Sorting trace points... [2.933s] Computing alignments... [108.1s] Deallocating buffers... [0.185s] Loading trace points... [0.099s] Sorting trace points... [3.177s] Computing alignments... [109.046s] Deallocating buffers... [0.325s] Loading trace points... [0.116s] Sorting trace points... [3.622s] Computing alignments... [107.105s] Deallocating buffers... [0.353s] Loading trace points... [0.077s] Sorting trace points... [3.552s] Computing alignments... [108.365s] Deallocating buffers... [0.461s] Loading trace points... [0.08s] Sorting trace points... [2.63s] Computing alignments... [106.436s] Deallocating buffers... [0.075s] Loading trace points... [0s] Sorting trace points... [3.06s] Computing alignments... [106.516s] Deallocating buffers... [0.602s] Loading trace points... [0s] [1788.19s] Deallocating reference... [0.08s] Loading reference sequences... [29.873s] Masking reference... [31.408s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.716s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.417s] Building query seed array... [2.953s] Computing hash join... [6.101s] Masking low complexity seeds... [0.24s] Searching alignments... [883.86s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.733s] Building query seed array... [3.803s] Computing hash join... [5.93s] Masking low complexity seeds... [0.255s] Searching alignments... [358.616s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.007s] Building query seed array... [3.655s] Computing hash join... [5.812s] Masking low complexity seeds... [0.267s] Searching alignments... [271.441s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.305s] Building query seed array... [2.983s] Computing hash join... [5.812s] Masking low complexity seeds... [0.257s] Searching alignments... [268.152s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.398s] Building query seed array... [2.622s] Computing hash join... [5.751s] Masking low complexity seeds... [0.237s] Searching alignments... [400.339s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.14s] Building query seed array... [3.386s] Computing hash join... [5.691s] Masking low complexity seeds... [0.276s] Searching alignments... [310.62s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.845s] Building query seed array... [3.438s] Computing hash join... [5.264s] Masking low complexity seeds... [0.263s] Searching alignments... [227.692s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.273s] Building query seed array... [2.881s] Computing hash join... [5.473s] Masking low complexity seeds... [0.255s] Searching alignments... [240.371s] Deallocating memory... [0s] Deallocating buffers... [1.473s] Clearing query masking... [1.956s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [16.423s] Sorting trace points... [3.3s] Computing alignments... [99.89s] Deallocating buffers... [0.121s] Loading trace points... [0.065s] Sorting trace points... [3.811s] Computing alignments... [100.793s] Deallocating buffers... [0.728s] Loading trace points... [0.105s] Sorting trace points... [3.304s] Computing alignments... [103.3s] Deallocating buffers... [0.134s] Loading trace points... [0.05s] Sorting trace points... [2.715s] Computing alignments... [105.551s] Deallocating buffers... [0.3s] Loading trace points... [0.091s] Sorting trace points... [3.81s] Computing alignments... [101.613s] Deallocating buffers... [0.689s] Loading trace points... [0.084s] Sorting trace points... [3.353s] Computing alignments... [102.579s] Deallocating buffers... [0.131s] Loading trace points... [0.073s] Sorting trace points... [3.77s] Computing alignments... [102.673s] Deallocating buffers... [0.727s] Loading trace points... [0.109s] Sorting trace points... [2.58s] Computing alignments... [104.667s] Deallocating buffers... [0.064s] Loading trace points... [0.083s] Sorting trace points... [2.777s] Computing alignments... [100.249s] Deallocating buffers... [0.19s] Loading trace points... [0.071s] Sorting trace points... [3.705s] Computing alignments... [102.768s] Deallocating buffers... [0.577s] Loading trace points... [0.061s] Sorting trace points... [3.036s] Computing alignments... [103.054s] Deallocating buffers... [0.068s] Loading trace points... [0.081s] Sorting trace points... [3.492s] Computing alignments... [102.979s] Deallocating buffers... [0.429s] Loading trace points... [0.062s] Sorting trace points... [2.962s] Computing alignments... [101.771s] Deallocating buffers... [0.343s] Loading trace points... [0.549s] Sorting trace points... [3.731s] Computing alignments... [103.601s] Deallocating buffers... [0.423s] Loading trace points... [0.074s] Sorting trace points... [3.631s] Computing alignments... [102.362s] Deallocating buffers... [0.457s] Loading trace points... [0s] Sorting trace points... [3.567s] Computing alignments... [100.736s] Deallocating buffers... [0.388s] Loading trace points... [0s] [1716.09s] Deallocating reference... [0.074s] Loading reference sequences... [33.183s] Masking reference... [31.393s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.175s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.308s] Building query seed array... [2.875s] Computing hash join... [6.434s] Masking low complexity seeds... [0.243s] Searching alignments... [872.712s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.896s] Building query seed array... [3.48s] Computing hash join... [6.871s] Masking low complexity seeds... [0.295s] Searching alignments... [363.92s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.543s] Building query seed array... [3.611s] Computing hash join... [7.023s] Masking low complexity seeds... [0.258s] Searching alignments... [275.551s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.153s] Building query seed array... [2.95s] Computing hash join... [6.407s] Masking low complexity seeds... [0.242s] Searching alignments... [271.868s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.146s] Building query seed array... [2.807s] Computing hash join... [6.305s] Masking low complexity seeds... [0.23s] Searching alignments... [402.946s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.329s] Building query seed array... [3.051s] Computing hash join... [6.352s] Masking low complexity seeds... [0.229s] Searching alignments... [315.085s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.397s] Building query seed array... [3.259s] Computing hash join... [6.819s] Masking low complexity seeds... [0.24s] Searching alignments... [225.992s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.258s] Building query seed array... [2.844s] Computing hash join... [6.681s] Masking low complexity seeds... [0.27s] Searching alignments... [240.821s] Deallocating memory... [0s] Deallocating buffers... [0.759s] Clearing query masking... [2.091s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.548s] Sorting trace points... [3.378s] Computing alignments... [100.254s] Deallocating buffers... [0.127s] Loading trace points... [0.109s] Sorting trace points... [3.499s] Computing alignments... [101.855s] Deallocating buffers... [0.364s] Loading trace points... [0.089s] Sorting trace points... [3.017s] Computing alignments... [103.377s] Deallocating buffers... [0.093s] Loading trace points... [0.047s] Sorting trace points... [3.27s] Computing alignments... [106.131s] Deallocating buffers... [0.56s] Loading trace points... [0.078s] Sorting trace points... [3.207s] Computing alignments... [101.235s] Deallocating buffers... [0.262s] Loading trace points... [0.001s] Sorting trace points... [3.283s] Computing alignments... [103.668s] Deallocating buffers... [0.442s] Loading trace points... [0.095s] Sorting trace points... [3.337s] Computing alignments... [103.929s] Deallocating buffers... [0.358s] Loading trace points... [0.054s] Sorting trace points... [3.214s] Computing alignments... [106.172s] Deallocating buffers... [0.436s] Loading trace points... [0.062s] Sorting trace points... [2.593s] Computing alignments... [101.665s] Deallocating buffers... [0.108s] Loading trace points... [0.118s] Sorting trace points... [2.502s] Computing alignments... [104.158s] Deallocating buffers... [0.1s] Loading trace points... [0.072s] Sorting trace points... [2.83s] Computing alignments... [105.422s] Deallocating buffers... [0.397s] Loading trace points... [0.123s] Sorting trace points... [3.798s] Computing alignments... [104.035s] Deallocating buffers... [0.276s] Loading trace points... [0.051s] Sorting trace points... [3.222s] Computing alignments... [102.944s] Deallocating buffers... [0.351s] Loading trace points... [0.088s] Sorting trace points... [2.556s] Computing alignments... [104.436s] Deallocating buffers... [0.095s] Loading trace points... [0.09s] Sorting trace points... [2.873s] Computing alignments... [103.948s] Deallocating buffers... [0.29s] Loading trace points... [0s] Sorting trace points... [3.037s] Computing alignments... [102.379s] Deallocating buffers... [0.098s] Loading trace points... [0s] [1727.45s] Deallocating reference... [0.071s] Loading reference sequences... [29.027s] Masking reference... [32.092s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [31.876s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.172s] Building query seed array... [2.933s] Computing hash join... [5.983s] Masking low complexity seeds... [0.249s] Searching alignments... [867.937s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.906s] Building query seed array... [3.789s] Computing hash join... [6.03s] Masking low complexity seeds... [0.272s] Searching alignments... [361.458s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.026s] Building query seed array... [3.612s] Computing hash join... [6.333s] Masking low complexity seeds... [0.253s] Searching alignments... [272.632s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.06s] Building query seed array... [3.047s] Computing hash join... [5.329s] Masking low complexity seeds... [0.24s] Searching alignments... [268.606s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.156s] Building query seed array... [2.684s] Computing hash join... [5.624s] Masking low complexity seeds... [0.272s] Searching alignments... [402.706s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.792s] Building query seed array... [3.111s] Computing hash join... [5.449s] Masking low complexity seeds... [0.236s] Searching alignments... [312.451s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.472s] Building query seed array... [3.378s] Computing hash join... [5.661s] Masking low complexity seeds... [0.256s] Searching alignments... [229.633s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.925s] Building query seed array... [2.977s] Computing hash join... [5.474s] Masking low complexity seeds... [0.226s] Searching alignments... [237.809s] Deallocating memory... [0s] Deallocating buffers... [1.313s] Clearing query masking... [1.861s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.631s] Sorting trace points... [3.407s] Computing alignments... [91.136s] Deallocating buffers... [0.094s] Loading trace points... [0.087s] Sorting trace points... [3.279s] Computing alignments... [92.809s] Deallocating buffers... [0.067s] Loading trace points... [0.063s] Sorting trace points... [3.587s] Computing alignments... [93.805s] Deallocating buffers... [0.336s] Loading trace points... [0.065s] Sorting trace points... [3.964s] Computing alignments... [97.132s] Deallocating buffers... [0.729s] Loading trace points... [0.045s] Sorting trace points... [2.466s] Computing alignments... [92.202s] Deallocating buffers... [0.061s] Loading trace points... [0.07s] Sorting trace points... [4.004s] Computing alignments... [93.365s] Deallocating buffers... [0.673s] Loading trace points... [0.079s] Sorting trace points... [3.142s] Computing alignments... [93.833s] Deallocating buffers... [0.072s] Loading trace points... [0.043s] Sorting trace points... [2.83s] Computing alignments... [95.825s] Deallocating buffers... [0.164s] Loading trace points... [0.29s] Sorting trace points... [3.63s] Computing alignments... [93.098s] Deallocating buffers... [0.637s] Loading trace points... [0.075s] Sorting trace points... [3.318s] Computing alignments... [94.947s] Deallocating buffers... [0.067s] Loading trace points... [0.129s] Sorting trace points... [3.657s] Computing alignments... [94.871s] Deallocating buffers... [0.318s] Loading trace points... [0.11s] Sorting trace points... [3.459s] Computing alignments... [95.279s] Deallocating buffers... [0.074s] Loading trace points... [0.106s] Sorting trace points... [2.715s] Computing alignments... [93.578s] Deallocating buffers... [0.286s] Loading trace points... [0.078s] Sorting trace points... [2.878s] Computing alignments... [94.943s] Deallocating buffers... [0.293s] Loading trace points... [0.088s] Sorting trace points... [3.823s] Computing alignments... [93.384s] Deallocating buffers... [0.43s] Loading trace points... [0s] Sorting trace points... [3.157s] Computing alignments... [92.682s] Deallocating buffers... [0.457s] Loading trace points... [0s] [1579.07s] Deallocating reference... [0.066s] Loading reference sequences... [29.988s] Masking reference... [32.157s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.286s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.409s] Building query seed array... [2.887s] Computing hash join... [5.967s] Masking low complexity seeds... [0.404s] Searching alignments... [869.578s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.674s] Building query seed array... [3.818s] Computing hash join... [6.235s] Masking low complexity seeds... [0.25s] Searching alignments... [363.676s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.594s] Building query seed array... [3.719s] Computing hash join... [6.356s] Masking low complexity seeds... [0.258s] Searching alignments... [275.019s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.791s] Building query seed array... [2.908s] Computing hash join... [6.557s] Masking low complexity seeds... [0.311s] Searching alignments... [271.39s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.001s] Building query seed array... [2.704s] Computing hash join... [6.091s] Masking low complexity seeds... [0.246s] Searching alignments... [407.892s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.239s] Building query seed array... [3.203s] Computing hash join... [6.115s] Masking low complexity seeds... [0.252s] Searching alignments... [312.533s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.77s] Building query seed array... [3.364s] Computing hash join... [6.137s] Masking low complexity seeds... [0.246s] Searching alignments... [230.234s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.273s] Building query seed array... [2.771s] Computing hash join... [6.177s] Masking low complexity seeds... [0.244s] Searching alignments... [241.192s] Deallocating memory... [0s] Deallocating buffers... [1.206s] Clearing query masking... [1.972s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.512s] Sorting trace points... [3.29s] Computing alignments... [109.088s] Deallocating buffers... [0.11s] Loading trace points... [0.05s] Sorting trace points... [3.32s] Computing alignments... [109.472s] Deallocating buffers... [0.371s] Loading trace points... [0.056s] Sorting trace points... [3.269s] Computing alignments... [111.558s] Deallocating buffers... [0.528s] Loading trace points... [0.076s] Sorting trace points... [3.009s] Computing alignments... [116.533s] Deallocating buffers... [0.124s] Loading trace points... [0.052s] Sorting trace points... [3.922s] Computing alignments... [110.789s] Deallocating buffers... [0.644s] Loading trace points... [0.071s] Sorting trace points... [2.525s] Computing alignments... [113.25s] Deallocating buffers... [0.089s] Loading trace points... [0.041s] Sorting trace points... [2.687s] Computing alignments... [112.779s] Deallocating buffers... [0.164s] Loading trace points... [0.056s] Sorting trace points... [3.79s] Computing alignments... [115.618s] Deallocating buffers... [0.564s] Loading trace points... [0.084s] Sorting trace points... [2.438s] Computing alignments... [109.129s] Deallocating buffers... [0.079s] Loading trace points... [0.081s] Sorting trace points... [2.876s] Computing alignments... [112.013s] Deallocating buffers... [0.274s] Loading trace points... [0.067s] Sorting trace points... [2.637s] Computing alignments... [113.11s] Deallocating buffers... [0.179s] Loading trace points... [0.074s] Sorting trace points... [2.641s] Computing alignments... [114.379s] Deallocating buffers... [0.24s] Loading trace points... [0.076s] Sorting trace points... [3.375s] Computing alignments... [112.737s] Deallocating buffers... [0.342s] Loading trace points... [0.065s] Sorting trace points... [3.377s] Computing alignments... [113.898s] Deallocating buffers... [0.337s] Loading trace points... [0.042s] Sorting trace points... [2.939s] Computing alignments... [111.018s] Deallocating buffers... [0.153s] Loading trace points... [0s] Sorting trace points... [2.805s] Computing alignments... [110.415s] Deallocating buffers... [0.388s] Loading trace points... [0s] [1866.78s] Deallocating reference... [0.079s] Loading reference sequences... [253.786s] Masking reference... [31.227s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.416s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.375s] Building query seed array... [2.914s] Computing hash join... [5.827s] Masking low complexity seeds... [0.262s] Searching alignments... [877.341s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.87s] Building query seed array... [3.937s] Computing hash join... [6.163s] Masking low complexity seeds... [0.28s] Searching alignments... [359.466s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.559s] Building query seed array... [3.693s] Computing hash join... [6.169s] Masking low complexity seeds... [0.341s] Searching alignments... [272.854s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.114s] Building query seed array... [2.874s] Computing hash join... [5.857s] Masking low complexity seeds... [0.244s] Searching alignments... [270.229s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.103s] Building query seed array... [2.867s] Computing hash join... [5.349s] Masking low complexity seeds... [0.251s] Searching alignments... [410.943s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.719s] Building query seed array... [3.166s] Computing hash join... [5.616s] Masking low complexity seeds... [0.237s] Searching alignments... [316.474s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.66s] Building query seed array... [3.313s] Computing hash join... [5.703s] Masking low complexity seeds... [0.25s] Searching alignments... [228.214s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.696s] Building query seed array... [3.025s] Computing hash join... [5.564s] Masking low complexity seeds... [0.256s] Searching alignments... [241.403s] Deallocating memory... [0s] Deallocating buffers... [1.24s] Clearing query masking... [1.933s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.412s] Sorting trace points... [3.309s] Computing alignments... [107.527s] Deallocating buffers... [0.392s] Loading trace points... [0.067s] Sorting trace points... [2.954s] Computing alignments... [106.666s] Deallocating buffers... [0.452s] Loading trace points... [0.058s] Sorting trace points... [3.36s] Computing alignments... [108.979s] Deallocating buffers... [0.449s] Loading trace points... [0.05s] Sorting trace points... [2.767s] Computing alignments... [112.367s] Deallocating buffers... [0.093s] Loading trace points... [0.048s] Sorting trace points... [3.052s] Computing alignments... [108.019s] Deallocating buffers... [0.327s] Loading trace points... [0.074s] Sorting trace points... [3.566s] Computing alignments... [108.807s] Deallocating buffers... [0.383s] Loading trace points... [0.068s] Sorting trace points... [2.697s] Computing alignments... [110.934s] Deallocating buffers... [0.2s] Loading trace points... [0.06s] Sorting trace points... [3.267s] Computing alignments... [112.662s] Deallocating buffers... [0.432s] Loading trace points... [0.047s] Sorting trace points... [3.362s] Computing alignments... [107.335s] Deallocating buffers... [0.301s] Loading trace points... [0.052s] Sorting trace points... [2.918s] Computing alignments... [109.817s] Deallocating buffers... [0.116s] Loading trace points... [0.097s] Sorting trace points... [3.379s] Computing alignments... [110.52s] Deallocating buffers... [0.261s] Loading trace points... [0.105s] Sorting trace points... [3.031s] Computing alignments... [110.76s] Deallocating buffers... [0.44s] Loading trace points... [0.139s] Sorting trace points... [3.662s] Computing alignments... [109.762s] Deallocating buffers... [0.403s] Loading trace points... [0.109s] Sorting trace points... [2.607s] Computing alignments... [111.913s] Deallocating buffers... [0.142s] Loading trace points... [0.091s] Sorting trace points... [2.744s] Computing alignments... [108.71s] Deallocating buffers... [0.229s] Loading trace points... [0s] Sorting trace points... [2.393s] Computing alignments... [107.542s] Deallocating buffers... [0.173s] Loading trace points... [0s] [1824.81s] Deallocating reference... [0.071s] Loading reference sequences... [29.052s] Masking reference... [30.861s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.436s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.25s] Building query seed array... [2.868s] Computing hash join... [6.019s] Masking low complexity seeds... [0.247s] Searching alignments... [880.062s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.548s] Building query seed array... [3.92s] Computing hash join... [6.418s] Masking low complexity seeds... [0.271s] Searching alignments... [364.457s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.276s] Building query seed array... [3.623s] Computing hash join... [6.222s] Masking low complexity seeds... [0.269s] Searching alignments... [274.666s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.603s] Building query seed array... [3.068s] Computing hash join... [6.269s] Masking low complexity seeds... [0.314s] Searching alignments... [269.046s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.312s] Building query seed array... [2.613s] Computing hash join... [5.75s] Masking low complexity seeds... [0.241s] Searching alignments... [410.031s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.464s] Building query seed array... [3.168s] Computing hash join... [6.167s] Masking low complexity seeds... [0.236s] Searching alignments... [311.784s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.788s] Building query seed array... [3.345s] Computing hash join... [6.15s] Masking low complexity seeds... [0.296s] Searching alignments... [229.828s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.558s] Building query seed array... [2.873s] Computing hash join... [5.52s] Masking low complexity seeds... [0.236s] Searching alignments... [244.863s] Deallocating memory... [0s] Deallocating buffers... [1.943s] Clearing query masking... [1.929s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [16.691s] Sorting trace points... [3.309s] Computing alignments... [100.556s] Deallocating buffers... [0.059s] Loading trace points... [0.079s] Sorting trace points... [3.593s] Computing alignments... [101.099s] Deallocating buffers... [0.557s] Loading trace points... [0.09s] Sorting trace points... [3.871s] Computing alignments... [102.069s] Deallocating buffers... [0.617s] Loading trace points... [0.057s] Sorting trace points... [3.351s] Computing alignments... [106.326s] Deallocating buffers... [0.472s] Loading trace points... [0.056s] Sorting trace points... [3.452s] Computing alignments... [101.448s] Deallocating buffers... [0.59s] Loading trace points... [0.001s] Sorting trace points... [3.211s] Computing alignments... [102.697s] Deallocating buffers... [0.372s] Loading trace points... [0.079s] Sorting trace points... [2.775s] Computing alignments... [103.344s] Deallocating buffers... [0.052s] Loading trace points... [0.059s] Sorting trace points... [2.908s] Computing alignments... [105.2s] Deallocating buffers... [0.207s] Loading trace points... [0.05s] Sorting trace points... [3.779s] Computing alignments... [100.661s] Deallocating buffers... [0.646s] Loading trace points... [0.055s] Sorting trace points... [2.858s] Computing alignments... [102.543s] Deallocating buffers... [0.079s] Loading trace points... [0.064s] Sorting trace points... [3.25s] Computing alignments... [103.757s] Deallocating buffers... [0.295s] Loading trace points... [0s] Sorting trace points... [3.476s] Computing alignments... [104.646s] Deallocating buffers... [0.183s] Loading trace points... [0.041s] Sorting trace points... [3.683s] Computing alignments... [102.509s] Deallocating buffers... [0.723s] Loading trace points... [0.08s] Sorting trace points... [2.457s] Computing alignments... [103.723s] Deallocating buffers... [0.066s] Loading trace points... [0.1s] Sorting trace points... [2.989s] Computing alignments... [102.384s] Deallocating buffers... [0.282s] Loading trace points... [0s] Sorting trace points... [3.504s] Computing alignments... [101.701s] Deallocating buffers... [0.483s] Loading trace points... [0s] [1720.51s] Deallocating reference... [0.072s] Loading reference sequences... [23.378s] Masking reference... [25.044s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.008s] Building reference histograms... [26.856s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.787s] Building query seed array... [2.886s] Computing hash join... [4.66s] Masking low complexity seeds... [0.23s] Searching alignments... [703.318s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.4s] Building query seed array... [3.756s] Computing hash join... [4.908s] Masking low complexity seeds... [0.289s] Searching alignments... [293.409s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.136s] Building query seed array... [3.711s] Computing hash join... [4.569s] Masking low complexity seeds... [0.298s] Searching alignments... [222.06s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.466s] Building query seed array... [3.094s] Computing hash join... [4.361s] Masking low complexity seeds... [0.23s] Searching alignments... [217.266s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.586s] Building query seed array... [2.866s] Computing hash join... [4.193s] Masking low complexity seeds... [0.216s] Searching alignments... [324.373s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.111s] Building query seed array... [3.205s] Computing hash join... [4.193s] Masking low complexity seeds... [0.223s] Searching alignments... [250.153s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.322s] Building query seed array... [3.44s] Computing hash join... [4.298s] Masking low complexity seeds... [0.216s] Searching alignments... [184.481s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.512s] Building query seed array... [2.722s] Computing hash join... [4.281s] Masking low complexity seeds... [0.21s] Searching alignments... [196.075s] Deallocating memory... [0s] Deallocating buffers... [1.135s] Clearing query masking... [1.944s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.423s] Sorting trace points... [2.765s] Computing alignments... [78.617s] Deallocating buffers... [0.147s] Loading trace points... [0.064s] Sorting trace points... [2.699s] Computing alignments... [79.325s] Deallocating buffers... [0.531s] Loading trace points... [0.078s] Sorting trace points... [2.494s] Computing alignments... [80.686s] Deallocating buffers... [0.048s] Loading trace points... [0.046s] Sorting trace points... [3.043s] Computing alignments... [82.929s] Deallocating buffers... [0.575s] Loading trace points... [0.062s] Sorting trace points... [2.685s] Computing alignments... [79.431s] Deallocating buffers... [0.047s] Loading trace points... [0.066s] Sorting trace points... [2.584s] Computing alignments... [80.299s] Deallocating buffers... [0.254s] Loading trace points... [0.07s] Sorting trace points... [2.543s] Computing alignments... [80.998s] Deallocating buffers... [0.057s] Loading trace points... [0.068s] Sorting trace points... [2.182s] Computing alignments... [82.802s] Deallocating buffers... [0.142s] Loading trace points... [0.064s] Sorting trace points... [1.91s] Computing alignments... [79.007s] Deallocating buffers... [0.05s] Loading trace points... [0.001s] Sorting trace points... [1.918s] Computing alignments... [80.323s] Deallocating buffers... [0.051s] Loading trace points... [0.065s] Sorting trace points... [3.081s] Computing alignments... [81.703s] Deallocating buffers... [0.417s] Loading trace points... [0.08s] Sorting trace points... [2.164s] Computing alignments... [81.546s] Deallocating buffers... [0.037s] Loading trace points... [0.001s] Sorting trace points... [2.79s] Computing alignments... [79.948s] Deallocating buffers... [0.085s] Loading trace points... [0.087s] Sorting trace points... [2.96s] Computing alignments... [81.609s] Deallocating buffers... [0.403s] Loading trace points... [0.072s] Sorting trace points... [2.017s] Computing alignments... [80.563s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [2.472s] Computing alignments... [79.158s] Deallocating buffers... [0.22s] Loading trace points... [0s] [1347.78s] Deallocating reference... [0.065s] Loading reference sequences... [0.107s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [6540.22s] [6540.22s] Deallocating queries... [0.084s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.23s] [4.182s] Closing the database... [0s] Cleaning up... [0s] Total time = 76170.2s Reported 6612145714 pairwise alignments, 6612145714 HSPs. 8153552 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH01-38.trimmed.R2.fastq.gz complete: CH01-38.trimmed.R2.blastx.meganized.daa Now MEGANizing CH01-38.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH01-38.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (348.8s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10,880.7s) Total reads: 8,153,552 With hits: 8,153,552 Alignments: 4,641,043,023 Assig. Taxonomy: 4,272,846 Assig. SEED: 171,913 Assig. EGGNOG: 53,836 Assig. GTDB: 346,577 Assig. EC: 713,444 Assig. INTERPRO2GO: 1,927,882 MinSupport set to: 4076 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 6,269 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (35.4s) Min-supp. changes: 4,595 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (14.1s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 171 Class. SEED: 505 Class. EGGNOG: 1,705 Class. GTDB: 43 Class. EC: 2,386 Class. INTERPRO2GO: 8,883 Total time: 11,289s Peak memory: 49.6 of 195.3G MEGANization of CH01-38.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-04.trimmed.R1.fastq.gz... aaf33557f59a58d068145674a3c40c4b /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-04.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-04.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.324s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.755s] Opening the output file... [0s] Loading query sequences... [73.744s] Masking queries... [19.384s] Algorithm: Double-indexed Building query histograms... [14.694s] Loading reference sequences... [29.217s] Masking reference... [30.803s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.046s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.293s] Building query seed array... [1.69s] Computing hash join... [5.004s] Masking low complexity seeds... [0.182s] Searching alignments... [304.347s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.871s] Building query seed array... [1.908s] Computing hash join... [5.393s] Masking low complexity seeds... [0.19s] Searching alignments... [121.736s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.901s] Building query seed array... [2.001s] Computing hash join... [4.79s] Masking low complexity seeds... [0.179s] Searching alignments... [100.749s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.997s] Building query seed array... [1.585s] Computing hash join... [4.945s] Masking low complexity seeds... [0.186s] Searching alignments... [93.986s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.207s] Building query seed array... [1.521s] Computing hash join... [4.801s] Masking low complexity seeds... [0.171s] Searching alignments... [138.247s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.415s] Building query seed array... [1.713s] Computing hash join... [5.223s] Masking low complexity seeds... [0.181s] Searching alignments... [111.79s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.312s] Building query seed array... [1.812s] Computing hash join... [5.195s] Masking low complexity seeds... [0.171s] Searching alignments... [82.198s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.31s] Building query seed array... [1.503s] Computing hash join... [4.624s] Masking low complexity seeds... [0.167s] Searching alignments... [85.114s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.203s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.391s] Sorting trace points... [1.304s] Computing alignments... [35.588s] Deallocating buffers... [0.019s] Loading trace points... [0.066s] Sorting trace points... [1.342s] Computing alignments... [36.966s] Deallocating buffers... [0.02s] Loading trace points... [0.081s] Sorting trace points... [1.369s] Computing alignments... [37.395s] Deallocating buffers... [0.025s] Loading trace points... [0.06s] Sorting trace points... [1.468s] Computing alignments... [38.683s] Deallocating buffers... [0.021s] Loading trace points... [0.046s] Sorting trace points... [1.383s] Computing alignments... [36.955s] Deallocating buffers... [0.021s] Loading trace points... [0.053s] Sorting trace points... [1.278s] Computing alignments... [37.491s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.414s] Computing alignments... [36.856s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.08s] Computing alignments... [38.93s] Deallocating buffers... [0.018s] Loading trace points... [0.05s] Sorting trace points... [1.356s] Computing alignments... [36.947s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.409s] Computing alignments... [37.82s] Deallocating buffers... [0.028s] Loading trace points... [0.061s] Sorting trace points... [1.401s] Computing alignments... [37.65s] Deallocating buffers... [0.017s] Loading trace points... [0.131s] Sorting trace points... [1.432s] Computing alignments... [39.269s] Deallocating buffers... [0.026s] Loading trace points... [0.057s] Sorting trace points... [1.453s] Computing alignments... [37.043s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.405s] Computing alignments... [37.519s] Deallocating buffers... [0.025s] Loading trace points... [0.051s] Sorting trace points... [1.074s] Computing alignments... [37.361s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.398s] Computing alignments... [37.723s] Deallocating buffers... [0.021s] Loading trace points... [0s] [630.549s] Deallocating reference... [0.056s] Loading reference sequences... [31.367s] Masking reference... [31.883s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.128s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.889s] Building query seed array... [1.629s] Computing hash join... [4.877s] Masking low complexity seeds... [0.178s] Searching alignments... [299.753s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.344s] Building query seed array... [1.866s] Computing hash join... [5.216s] Masking low complexity seeds... [0.18s] Searching alignments... [123.81s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.142s] Building query seed array... [1.917s] Computing hash join... [5.106s] Masking low complexity seeds... [0.183s] Searching alignments... [97.137s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.84s] Building query seed array... [1.627s] Computing hash join... [4.952s] Masking low complexity seeds... [0.183s] Searching alignments... [93.69s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.377s] Building query seed array... [1.581s] Computing hash join... [4.946s] Masking low complexity seeds... [0.172s] Searching alignments... [135.964s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.17s] Building query seed array... [1.693s] Computing hash join... [4.942s] Masking low complexity seeds... [0.173s] Searching alignments... [106.879s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.509s] Building query seed array... [1.802s] Computing hash join... [5.208s] Masking low complexity seeds... [0.19s] Searching alignments... [82.627s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.945s] Building query seed array... [1.521s] Computing hash join... [5.137s] Masking low complexity seeds... [0.18s] Searching alignments... [83.114s] Deallocating memory... [0s] Deallocating buffers... [0.146s] Clearing query masking... [1.204s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.439s] Sorting trace points... [1.415s] Computing alignments... [37.305s] Deallocating buffers... [0.017s] Loading trace points... [0.052s] Sorting trace points... [1.02s] Computing alignments... [38.903s] Deallocating buffers... [0.02s] Loading trace points... [0.065s] Sorting trace points... [1.452s] Computing alignments... [38.73s] Deallocating buffers... [0.024s] Loading trace points... [0.063s] Sorting trace points... [1.461s] Computing alignments... [40.452s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.046s] Computing alignments... [39.409s] Deallocating buffers... [0.028s] Loading trace points... [0.069s] Sorting trace points... [1.218s] Computing alignments... [39.655s] Deallocating buffers... [0.029s] Loading trace points... [0.046s] Sorting trace points... [1.402s] Computing alignments... [38.544s] Deallocating buffers... [0.026s] Loading trace points... [0.134s] Sorting trace points... [1.395s] Computing alignments... [41.719s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [1.389s] Computing alignments... [39.432s] Deallocating buffers... [0.03s] Loading trace points... [0.075s] Sorting trace points... [1.379s] Computing alignments... [39.62s] Deallocating buffers... [0.029s] Loading trace points... [0.074s] Sorting trace points... [1.489s] Computing alignments... [39.637s] Deallocating buffers... [0.022s] Loading trace points... [0.07s] Sorting trace points... [1.036s] Computing alignments... [41.918s] Deallocating buffers... [0.033s] Loading trace points... [0.093s] Sorting trace points... [1.387s] Computing alignments... [39.661s] Deallocating buffers... [0.026s] Loading trace points... [0.037s] Sorting trace points... [1.017s] Computing alignments... [40.948s] Deallocating buffers... [0.029s] Loading trace points... [0.093s] Sorting trace points... [1.416s] Computing alignments... [39.629s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.234s] Computing alignments... [39.109s] Deallocating buffers... [0.018s] Loading trace points... [0s] [664.405s] Deallocating reference... [0.057s] Loading reference sequences... [29.733s] Masking reference... [30.956s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.17s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.411s] Building query seed array... [1.7s] Computing hash join... [5.421s] Masking low complexity seeds... [0.193s] Searching alignments... [300.753s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.811s] Building query seed array... [2.367s] Computing hash join... [5.556s] Masking low complexity seeds... [0.187s] Searching alignments... [125.003s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.165s] Building query seed array... [2.154s] Computing hash join... [5.362s] Masking low complexity seeds... [0.192s] Searching alignments... [98.171s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.157s] Building query seed array... [1.668s] Computing hash join... [5.297s] Masking low complexity seeds... [0.195s] Searching alignments... [96.178s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.331s] Building query seed array... [1.635s] Computing hash join... [4.706s] Masking low complexity seeds... [0.188s] Searching alignments... [135.858s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.566s] Building query seed array... [1.902s] Computing hash join... [5.144s] Masking low complexity seeds... [0.178s] Searching alignments... [105.587s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.888s] Building query seed array... [1.941s] Computing hash join... [5.394s] Masking low complexity seeds... [0.178s] Searching alignments... [82.257s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.104s] Building query seed array... [1.624s] Computing hash join... [5.323s] Masking low complexity seeds... [0.172s] Searching alignments... [82.365s] Deallocating memory... [0s] Deallocating buffers... [0.921s] Clearing query masking... [1.177s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.457s] Sorting trace points... [1.395s] Computing alignments... [36.98s] Deallocating buffers... [0.021s] Loading trace points... [0.065s] Sorting trace points... [1.371s] Computing alignments... [38.37s] Deallocating buffers... [0.028s] Loading trace points... [0.049s] Sorting trace points... [1.36s] Computing alignments... [38.239s] Deallocating buffers... [0.025s] Loading trace points... [0.06s] Sorting trace points... [1.239s] Computing alignments... [39.881s] Deallocating buffers... [0.039s] Loading trace points... [0.088s] Sorting trace points... [1.433s] Computing alignments... [38.645s] Deallocating buffers... [0.028s] Loading trace points... [0.061s] Sorting trace points... [1.376s] Computing alignments... [39.232s] Deallocating buffers... [0.031s] Loading trace points... [0.003s] Sorting trace points... [1.271s] Computing alignments... [38.188s] Deallocating buffers... [0.025s] Loading trace points... [0.084s] Sorting trace points... [1.427s] Computing alignments... [40.78s] Deallocating buffers... [0.02s] Loading trace points... [0.069s] Sorting trace points... [1.415s] Computing alignments... [39.398s] Deallocating buffers... [0.026s] Loading trace points... [0.061s] Sorting trace points... [1.161s] Computing alignments... [39.246s] Deallocating buffers... [0.03s] Loading trace points... [0.081s] Sorting trace points... [1.427s] Computing alignments... [38.706s] Deallocating buffers... [0.022s] Loading trace points... [0.082s] Sorting trace points... [1.215s] Computing alignments... [40.917s] Deallocating buffers... [0.029s] Loading trace points... [0.061s] Sorting trace points... [1.119s] Computing alignments... [39.434s] Deallocating buffers... [0.028s] Loading trace points... [0.068s] Sorting trace points... [1.429s] Computing alignments... [40.262s] Deallocating buffers... [0.027s] Loading trace points... [0.068s] Sorting trace points... [1.427s] Computing alignments... [39.156s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.09s] Computing alignments... [38.098s] Deallocating buffers... [0.028s] Loading trace points... [0s] [655.61s] Deallocating reference... [0.057s] Loading reference sequences... [30.265s] Masking reference... [32.217s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.528s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.583s] Building query seed array... [1.709s] Computing hash join... [5.332s] Masking low complexity seeds... [0.186s] Searching alignments... [299.397s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.603s] Building query seed array... [1.91s] Computing hash join... [5.315s] Masking low complexity seeds... [0.188s] Searching alignments... [125.628s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.989s] Building query seed array... [1.941s] Computing hash join... [4.766s] Masking low complexity seeds... [0.182s] Searching alignments... [98.769s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.238s] Building query seed array... [1.61s] Computing hash join... [5.204s] Masking low complexity seeds... [0.18s] Searching alignments... [95.709s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.253s] Building query seed array... [1.541s] Computing hash join... [4.602s] Masking low complexity seeds... [0.176s] Searching alignments... [135.845s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.231s] Building query seed array... [1.709s] Computing hash join... [4.963s] Masking low complexity seeds... [0.182s] Searching alignments... [108.636s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.312s] Building query seed array... [1.803s] Computing hash join... [5.118s] Masking low complexity seeds... [0.178s] Searching alignments... [82.448s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.077s] Building query seed array... [1.512s] Computing hash join... [4.991s] Masking low complexity seeds... [0.171s] Searching alignments... [84.151s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [1.218s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.459s] Sorting trace points... [1.26s] Computing alignments... [38.657s] Deallocating buffers... [0.02s] Loading trace points... [0.046s] Sorting trace points... [1.376s] Computing alignments... [39.848s] Deallocating buffers... [0.029s] Loading trace points... [0.062s] Sorting trace points... [1.388s] Computing alignments... [39.2s] Deallocating buffers... [0.025s] Loading trace points... [0.54s] Sorting trace points... [1.465s] Computing alignments... [40.982s] Deallocating buffers... [0.031s] Loading trace points... [0.075s] Sorting trace points... [1.384s] Computing alignments... [40.656s] Deallocating buffers... [0.025s] Loading trace points... [0.053s] Sorting trace points... [1.427s] Computing alignments... [40.28s] Deallocating buffers... [0.018s] Loading trace points... [0.057s] Sorting trace points... [1.098s] Computing alignments... [39.482s] Deallocating buffers... [0.026s] Loading trace points... [0.078s] Sorting trace points... [1.442s] Computing alignments... [42.654s] Deallocating buffers... [0.025s] Loading trace points... [0.001s] Sorting trace points... [1.415s] Computing alignments... [40.57s] Deallocating buffers... [0.033s] Loading trace points... [0.002s] Sorting trace points... [1.454s] Computing alignments... [40.792s] Deallocating buffers... [0.026s] Loading trace points... [0.046s] Sorting trace points... [1.407s] Computing alignments... [40.356s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.273s] Computing alignments... [42.864s] Deallocating buffers... [0.022s] Loading trace points... [0.076s] Sorting trace points... [1.402s] Computing alignments... [40.92s] Deallocating buffers... [0.026s] Loading trace points... [0.063s] Sorting trace points... [1.458s] Computing alignments... [42.109s] Deallocating buffers... [0.029s] Loading trace points... [0.106s] Sorting trace points... [1.119s] Computing alignments... [41.084s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.112s] Computing alignments... [39.633s] Deallocating buffers... [0.025s] Loading trace points... [0s] [680.839s] Deallocating reference... [0.061s] Loading reference sequences... [246.178s] Masking reference... [30.896s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.523s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.08s] Building query seed array... [1.667s] Computing hash join... [5.136s] Masking low complexity seeds... [0.18s] Searching alignments... [301.834s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.498s] Building query seed array... [2.297s] Computing hash join... [4.811s] Masking low complexity seeds... [0.181s] Searching alignments... [121.72s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.493s] Building query seed array... [2.112s] Computing hash join... [4.791s] Masking low complexity seeds... [0.189s] Searching alignments... [98.929s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.016s] Building query seed array... [1.738s] Computing hash join... [4.823s] Masking low complexity seeds... [0.181s] Searching alignments... [95.87s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.038s] Building query seed array... [1.663s] Computing hash join... [4.678s] Masking low complexity seeds... [0.173s] Searching alignments... [138.496s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.295s] Building query seed array... [1.884s] Computing hash join... [4.742s] Masking low complexity seeds... [0.168s] Searching alignments... [108.569s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.494s] Building query seed array... [1.951s] Computing hash join... [4.707s] Masking low complexity seeds... [0.173s] Searching alignments... [83.279s] Deallocating memory... [0.017s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.512s] Building query seed array... [1.656s] Computing hash join... [4.762s] Masking low complexity seeds... [0.167s] Searching alignments... [82.627s] Deallocating memory... [0s] Deallocating buffers... [0.478s] Clearing query masking... [1.175s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.653s] Sorting trace points... [1.337s] Computing alignments... [40.519s] Deallocating buffers... [0.041s] Loading trace points... [0.063s] Sorting trace points... [1.391s] Computing alignments... [41.75s] Deallocating buffers... [0.025s] Loading trace points... [0.053s] Sorting trace points... [1.399s] Computing alignments... [41.064s] Deallocating buffers... [0.031s] Loading trace points... [0.051s] Sorting trace points... [1.465s] Computing alignments... [43.29s] Deallocating buffers... [0.046s] Loading trace points... [0.061s] Sorting trace points... [1.398s] Computing alignments... [42.68s] Deallocating buffers... [0.042s] Loading trace points... [0.087s] Sorting trace points... [1.448s] Computing alignments... [42.367s] Deallocating buffers... [0.041s] Loading trace points... [0.048s] Sorting trace points... [1.427s] Computing alignments... [41.663s] Deallocating buffers... [0.036s] Loading trace points... [0.072s] Sorting trace points... [1.435s] Computing alignments... [44.789s] Deallocating buffers... [0.039s] Loading trace points... [0.842s] Sorting trace points... [1.437s] Computing alignments... [43.142s] Deallocating buffers... [0.033s] Loading trace points... [0.087s] Sorting trace points... [1.211s] Computing alignments... [42.721s] Deallocating buffers... [0.039s] Loading trace points... [0.075s] Sorting trace points... [1.065s] Computing alignments... [41.87s] Deallocating buffers... [0.026s] Loading trace points... [0.074s] Sorting trace points... [1.446s] Computing alignments... [44.682s] Deallocating buffers... [0.043s] Loading trace points... [0.003s] Sorting trace points... [1.048s] Computing alignments... [43.049s] Deallocating buffers... [0.039s] Loading trace points... [0.052s] Sorting trace points... [1.086s] Computing alignments... [44.13s] Deallocating buffers... [0.036s] Loading trace points... [0.083s] Sorting trace points... [1.389s] Computing alignments... [43.239s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.279s] Computing alignments... [41.316s] Deallocating buffers... [0.039s] Loading trace points... [0s] [713.571s] Deallocating reference... [0.059s] Loading reference sequences... [30.586s] Masking reference... [31.867s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [31.668s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.212s] Building query seed array... [1.661s] Computing hash join... [5.028s] Masking low complexity seeds... [0.18s] Searching alignments... [297.027s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.361s] Building query seed array... [1.883s] Computing hash join... [5.391s] Masking low complexity seeds... [0.19s] Searching alignments... [122.992s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.356s] Building query seed array... [1.931s] Computing hash join... [5.084s] Masking low complexity seeds... [0.195s] Searching alignments... [97.211s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.4s] Building query seed array... [1.656s] Computing hash join... [5.332s] Masking low complexity seeds... [0.196s] Searching alignments... [92.961s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.949s] Building query seed array... [1.481s] Computing hash join... [5.199s] Masking low complexity seeds... [0.184s] Searching alignments... [131.223s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.057s] Building query seed array... [1.694s] Computing hash join... [4.631s] Masking low complexity seeds... [0.163s] Searching alignments... [107.738s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.902s] Building query seed array... [1.806s] Computing hash join... [4.977s] Masking low complexity seeds... [0.178s] Searching alignments... [82.315s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.331s] Building query seed array... [1.521s] Computing hash join... [4.974s] Masking low complexity seeds... [0.166s] Searching alignments... [84.463s] Deallocating memory... [0s] Deallocating buffers... [0.156s] Clearing query masking... [1.169s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.432s] Sorting trace points... [1.369s] Computing alignments... [35.106s] Deallocating buffers... [0.027s] Loading trace points... [0.056s] Sorting trace points... [1.308s] Computing alignments... [36.321s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.394s] Computing alignments... [37.007s] Deallocating buffers... [0.034s] Loading trace points... [0.002s] Sorting trace points... [1.475s] Computing alignments... [38.339s] Deallocating buffers... [0.031s] Loading trace points... [0.002s] Sorting trace points... [1.369s] Computing alignments... [36.821s] Deallocating buffers... [0.024s] Loading trace points... [0.062s] Sorting trace points... [1.43s] Computing alignments... [37.015s] Deallocating buffers... [0.017s] Loading trace points... [0.048s] Sorting trace points... [1.382s] Computing alignments... [36.462s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.362s] Computing alignments... [38.005s] Deallocating buffers... [0.02s] Loading trace points... [0.057s] Sorting trace points... [1.334s] Computing alignments... [36.208s] Deallocating buffers... [0.019s] Loading trace points... [0.074s] Sorting trace points... [1.124s] Computing alignments... [36.562s] Deallocating buffers... [0.018s] Loading trace points... [0.087s] Sorting trace points... [1.484s] Computing alignments... [36.844s] Deallocating buffers... [0.017s] Loading trace points... [0.086s] Sorting trace points... [1.349s] Computing alignments... [38.692s] Deallocating buffers... [0.029s] Loading trace points... [0.077s] Sorting trace points... [1.349s] Computing alignments... [36.639s] Deallocating buffers... [0.028s] Loading trace points... [0.002s] Sorting trace points... [1.422s] Computing alignments... [36.979s] Deallocating buffers... [0.02s] Loading trace points... [0.087s] Sorting trace points... [1.429s] Computing alignments... [36.901s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.128s] Computing alignments... [37.132s] Deallocating buffers... [0.018s] Loading trace points... [0s] [621.438s] Deallocating reference... [0.059s] Loading reference sequences... [30.902s] Masking reference... [30.881s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [31.762s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.952s] Building query seed array... [1.67s] Computing hash join... [5.029s] Masking low complexity seeds... [0.187s] Searching alignments... [298.032s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.515s] Building query seed array... [1.889s] Computing hash join... [5.274s] Masking low complexity seeds... [0.182s] Searching alignments... [124.415s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.361s] Building query seed array... [1.974s] Computing hash join... [5.349s] Masking low complexity seeds... [0.198s] Searching alignments... [96.676s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.263s] Building query seed array... [1.595s] Computing hash join... [5.23s] Masking low complexity seeds... [0.201s] Searching alignments... [94.803s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.135s] Building query seed array... [1.469s] Computing hash join... [4.827s] Masking low complexity seeds... [0.171s] Searching alignments... [133.919s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.281s] Building query seed array... [1.731s] Computing hash join... [5.199s] Masking low complexity seeds... [0.172s] Searching alignments... [107.333s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.281s] Building query seed array... [1.818s] Computing hash join... [5.164s] Masking low complexity seeds... [0.174s] Searching alignments... [81.995s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.055s] Building query seed array... [1.549s] Computing hash join... [5.232s] Masking low complexity seeds... [0.184s] Searching alignments... [82.87s] Deallocating memory... [0s] Deallocating buffers... [0.163s] Clearing query masking... [1.255s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.386s] Sorting trace points... [1.376s] Computing alignments... [34.886s] Deallocating buffers... [0.017s] Loading trace points... [0.049s] Sorting trace points... [1.177s] Computing alignments... [36.354s] Deallocating buffers... [0.019s] Loading trace points... [0.045s] Sorting trace points... [1.394s] Computing alignments... [36.764s] Deallocating buffers... [0.028s] Loading trace points... [0.001s] Sorting trace points... [1.274s] Computing alignments... [38.277s] Deallocating buffers... [0.027s] Loading trace points... [0.002s] Sorting trace points... [1.385s] Computing alignments... [36.509s] Deallocating buffers... [0.019s] Loading trace points... [0.063s] Sorting trace points... [1.397s] Computing alignments... [36.834s] Deallocating buffers... [0.028s] Loading trace points... [0.044s] Sorting trace points... [1.002s] Computing alignments... [36.447s] Deallocating buffers... [0.029s] Loading trace points... [0.061s] Sorting trace points... [1.305s] Computing alignments... [37.792s] Deallocating buffers... [0.018s] Loading trace points... [0.06s] Sorting trace points... [1.313s] Computing alignments... [36.047s] Deallocating buffers... [0.016s] Loading trace points... [0.046s] Sorting trace points... [1.422s] Computing alignments... [36.737s] Deallocating buffers... [0.017s] Loading trace points... [0.055s] Sorting trace points... [1.045s] Computing alignments... [36.676s] Deallocating buffers... [0.019s] Loading trace points... [0.042s] Sorting trace points... [1.445s] Computing alignments... [38.487s] Deallocating buffers... [0.029s] Loading trace points... [0.069s] Sorting trace points... [1.382s] Computing alignments... [36.653s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.38s] Computing alignments... [36.916s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.417s] Computing alignments... [36.954s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.327s] Computing alignments... [36.987s] Deallocating buffers... [0.018s] Loading trace points... [0s] [618.797s] Deallocating reference... [0.059s] Loading reference sequences... [29.133s] Masking reference... [30.899s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.045s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.044s] Building query seed array... [1.621s] Computing hash join... [5.082s] Masking low complexity seeds... [0.181s] Searching alignments... [295.386s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.494s] Building query seed array... [1.911s] Computing hash join... [5.466s] Masking low complexity seeds... [0.18s] Searching alignments... [125.904s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.418s] Building query seed array... [2.004s] Computing hash join... [5.152s] Masking low complexity seeds... [0.182s] Searching alignments... [98.566s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.95s] Building query seed array... [1.624s] Computing hash join... [5.314s] Masking low complexity seeds... [0.186s] Searching alignments... [94.636s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.063s] Building query seed array... [1.478s] Computing hash join... [4.789s] Masking low complexity seeds... [0.174s] Searching alignments... [133.336s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.257s] Building query seed array... [1.691s] Computing hash join... [5.001s] Masking low complexity seeds... [0.178s] Searching alignments... [108.797s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.501s] Building query seed array... [1.807s] Computing hash join... [5.248s] Masking low complexity seeds... [0.177s] Searching alignments... [82.829s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.075s] Building query seed array... [1.522s] Computing hash join... [5.016s] Masking low complexity seeds... [0.174s] Searching alignments... [83.594s] Deallocating memory... [0s] Deallocating buffers... [0.165s] Clearing query masking... [1.183s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.219s] Sorting trace points... [1.389s] Computing alignments... [33.944s] Deallocating buffers... [0.017s] Loading trace points... [0.048s] Sorting trace points... [1.139s] Computing alignments... [35.345s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.423s] Computing alignments... [35.843s] Deallocating buffers... [0.026s] Loading trace points... [0.083s] Sorting trace points... [1.243s] Computing alignments... [37.019s] Deallocating buffers... [0.02s] Loading trace points... [0.069s] Sorting trace points... [1.329s] Computing alignments... [35.353s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.403s] Computing alignments... [35.837s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.346s] Computing alignments... [35.185s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.397s] Computing alignments... [36.869s] Deallocating buffers... [0.025s] Loading trace points... [0.05s] Sorting trace points... [1.262s] Computing alignments... [35.107s] Deallocating buffers... [0.017s] Loading trace points... [0.055s] Sorting trace points... [1.405s] Computing alignments... [35.903s] Deallocating buffers... [0.017s] Loading trace points... [0.24s] Sorting trace points... [1.396s] Computing alignments... [36.005s] Deallocating buffers... [0.021s] Loading trace points... [0.05s] Sorting trace points... [1.43s] Computing alignments... [37.514s] Deallocating buffers... [0.023s] Loading trace points... [0.077s] Sorting trace points... [1.411s] Computing alignments... [35.582s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.385s] Computing alignments... [35.669s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.317s] Computing alignments... [35.953s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.366s] Computing alignments... [36.008s] Deallocating buffers... [0.027s] Loading trace points... [0s] [603.434s] Deallocating reference... [0.065s] Loading reference sequences... [30.425s] Masking reference... [30.957s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.361s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.99s] Building query seed array... [1.647s] Computing hash join... [5.616s] Masking low complexity seeds... [0.185s] Searching alignments... [307.665s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.156s] Building query seed array... [2.402s] Computing hash join... [4.838s] Masking low complexity seeds... [0.182s] Searching alignments... [123.611s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.222s] Building query seed array... [2.162s] Computing hash join... [5.584s] Masking low complexity seeds... [0.203s] Searching alignments... [98s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.108s] Building query seed array... [1.696s] Computing hash join... [4.998s] Masking low complexity seeds... [0.192s] Searching alignments... [95.724s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.247s] Building query seed array... [1.724s] Computing hash join... [4.829s] Masking low complexity seeds... [0.172s] Searching alignments... [136.378s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.666s] Building query seed array... [1.85s] Computing hash join... [5.403s] Masking low complexity seeds... [0.178s] Searching alignments... [106.938s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.668s] Building query seed array... [1.953s] Computing hash join... [5.157s] Masking low complexity seeds... [0.173s] Searching alignments... [83.281s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.986s] Building query seed array... [1.682s] Computing hash join... [5.302s] Masking low complexity seeds... [0.199s] Searching alignments... [87.509s] Deallocating memory... [0s] Deallocating buffers... [1.174s] Clearing query masking... [1.168s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.483s] Sorting trace points... [1.376s] Computing alignments... [39.236s] Deallocating buffers... [0.032s] Loading trace points... [0.075s] Sorting trace points... [1.365s] Computing alignments... [40.762s] Deallocating buffers... [0.039s] Loading trace points... [0.078s] Sorting trace points... [1.4s] Computing alignments... [39.698s] Deallocating buffers... [0.034s] Loading trace points... [0.003s] Sorting trace points... [1.355s] Computing alignments... [41.742s] Deallocating buffers... [0.041s] Loading trace points... [0.047s] Sorting trace points... [1.193s] Computing alignments... [41.443s] Deallocating buffers... [0.037s] Loading trace points... [0.097s] Sorting trace points... [1.411s] Computing alignments... [41.474s] Deallocating buffers... [0.036s] Loading trace points... [0.055s] Sorting trace points... [1.419s] Computing alignments... [40.177s] Deallocating buffers... [0.035s] Loading trace points... [0.07s] Sorting trace points... [1.151s] Computing alignments... [43.188s] Deallocating buffers... [0.035s] Loading trace points... [0.278s] Sorting trace points... [1.433s] Computing alignments... [41.69s] Deallocating buffers... [0.031s] Loading trace points... [0.092s] Sorting trace points... [1.106s] Computing alignments... [41.49s] Deallocating buffers... [0.029s] Loading trace points... [0.061s] Sorting trace points... [1.429s] Computing alignments... [40.63s] Deallocating buffers... [0.02s] Loading trace points... [0.051s] Sorting trace points... [1.307s] Computing alignments... [43.236s] Deallocating buffers... [0.022s] Loading trace points... [0.058s] Sorting trace points... [1.398s] Computing alignments... [41.457s] Deallocating buffers... [0.037s] Loading trace points... [0.048s] Sorting trace points... [1.422s] Computing alignments... [42.5s] Deallocating buffers... [0.032s] Loading trace points... [0.087s] Sorting trace points... [1.377s] Computing alignments... [41.551s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.465s] Computing alignments... [39.817s] Deallocating buffers... [0.027s] Loading trace points... [0s] [690.972s] Deallocating reference... [0.059s] Loading reference sequences... [34.189s] Masking reference... [30.86s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.211s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.925s] Building query seed array... [1.683s] Computing hash join... [5.309s] Masking low complexity seeds... [0.196s] Searching alignments... [297.426s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.569s] Building query seed array... [1.907s] Computing hash join... [5.394s] Masking low complexity seeds... [0.182s] Searching alignments... [121.989s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.893s] Building query seed array... [2.065s] Computing hash join... [5.342s] Masking low complexity seeds... [0.199s] Searching alignments... [97.773s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.215s] Building query seed array... [1.676s] Computing hash join... [5s] Masking low complexity seeds... [0.184s] Searching alignments... [94.654s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.783s] Building query seed array... [1.456s] Computing hash join... [5.281s] Masking low complexity seeds... [0.183s] Searching alignments... [134.763s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.671s] Building query seed array... [1.765s] Computing hash join... [5.072s] Masking low complexity seeds... [0.175s] Searching alignments... [107.305s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.342s] Building query seed array... [1.76s] Computing hash join... [5.371s] Masking low complexity seeds... [0.193s] Searching alignments... [83.244s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.763s] Building query seed array... [1.483s] Computing hash join... [4.903s] Masking low complexity seeds... [0.172s] Searching alignments... [83.133s] Deallocating memory... [0s] Deallocating buffers... [0.161s] Clearing query masking... [1.152s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.596s] Sorting trace points... [1.361s] Computing alignments... [33.413s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.352s] Computing alignments... [34.682s] Deallocating buffers... [0.016s] Loading trace points... [0.047s] Sorting trace points... [1.362s] Computing alignments... [35.129s] Deallocating buffers... [0.026s] Loading trace points... [0.002s] Sorting trace points... [1.431s] Computing alignments... [36.223s] Deallocating buffers... [0.017s] Loading trace points... [0.002s] Sorting trace points... [1.329s] Computing alignments... [34.373s] Deallocating buffers... [0.02s] Loading trace points... [0.077s] Sorting trace points... [1.319s] Computing alignments... [34.931s] Deallocating buffers... [0.02s] Loading trace points... [0.075s] Sorting trace points... [1.382s] Computing alignments... [34.308s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.435s] Computing alignments... [35.927s] Deallocating buffers... [0.017s] Loading trace points... [0.253s] Sorting trace points... [1.428s] Computing alignments... [34.179s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.402s] Computing alignments... [35.119s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.083s] Computing alignments... [34.988s] Deallocating buffers... [0.018s] Loading trace points... [0.054s] Sorting trace points... [1.402s] Computing alignments... [36.489s] Deallocating buffers... [0.018s] Loading trace points... [0.068s] Sorting trace points... [1.442s] Computing alignments... [34.504s] Deallocating buffers... [0.02s] Loading trace points... [0.001s] Sorting trace points... [1.41s] Computing alignments... [34.867s] Deallocating buffers... [0.02s] Loading trace points... [0.102s] Sorting trace points... [1.399s] Computing alignments... [34.931s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.138s] Computing alignments... [34.731s] Deallocating buffers... [0.018s] Loading trace points... [0s] [589.453s] Deallocating reference... [0.058s] Loading reference sequences... [29.116s] Masking reference... [30.87s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.691s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.239s] Building query seed array... [1.671s] Computing hash join... [4.953s] Masking low complexity seeds... [0.187s] Searching alignments... [305.161s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.777s] Building query seed array... [1.892s] Computing hash join... [5.454s] Masking low complexity seeds... [0.187s] Searching alignments... [122.59s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.432s] Building query seed array... [2.016s] Computing hash join... [5.139s] Masking low complexity seeds... [0.195s] Searching alignments... [99.347s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.689s] Building query seed array... [1.585s] Computing hash join... [5.499s] Masking low complexity seeds... [0.196s] Searching alignments... [94.129s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.707s] Building query seed array... [1.492s] Computing hash join... [5.101s] Masking low complexity seeds... [0.175s] Searching alignments... [133.351s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.668s] Building query seed array... [1.749s] Computing hash join... [5.07s] Masking low complexity seeds... [0.18s] Searching alignments... [108.547s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.452s] Building query seed array... [1.784s] Computing hash join... [5.06s] Masking low complexity seeds... [0.179s] Searching alignments... [82.81s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.883s] Building query seed array... [1.52s] Computing hash join... [5.228s] Masking low complexity seeds... [0.176s] Searching alignments... [83.815s] Deallocating memory... [0s] Deallocating buffers... [0.161s] Clearing query masking... [1.207s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.171s] Sorting trace points... [1.196s] Computing alignments... [40.389s] Deallocating buffers... [0.021s] Loading trace points... [0.055s] Sorting trace points... [1.042s] Computing alignments... [41.667s] Deallocating buffers... [0.029s] Loading trace points... [0.102s] Sorting trace points... [1.364s] Computing alignments... [42.039s] Deallocating buffers... [0.032s] Loading trace points... [0.066s] Sorting trace points... [1.475s] Computing alignments... [43.92s] Deallocating buffers... [0.032s] Loading trace points... [0.044s] Sorting trace points... [1.389s] Computing alignments... [42.731s] Deallocating buffers... [0.024s] Loading trace points... [0.079s] Sorting trace points... [1.17s] Computing alignments... [42.982s] Deallocating buffers... [0.03s] Loading trace points... [0.079s] Sorting trace points... [1.09s] Computing alignments... [42.325s] Deallocating buffers... [0.027s] Loading trace points... [0.083s] Sorting trace points... [1.394s] Computing alignments... [44.452s] Deallocating buffers... [0.029s] Loading trace points... [0.061s] Sorting trace points... [1.176s] Computing alignments... [42.854s] Deallocating buffers... [0.029s] Loading trace points... [0.075s] Sorting trace points... [1.389s] Computing alignments... [42.478s] Deallocating buffers... [0.035s] Loading trace points... [0.067s] Sorting trace points... [1.413s] Computing alignments... [42.392s] Deallocating buffers... [0.022s] Loading trace points... [0.059s] Sorting trace points... [1.439s] Computing alignments... [44.707s] Deallocating buffers... [0.03s] Loading trace points... [0.002s] Sorting trace points... [1.068s] Computing alignments... [43.475s] Deallocating buffers... [0.026s] Loading trace points... [0.041s] Sorting trace points... [1.082s] Computing alignments... [43.929s] Deallocating buffers... [0.031s] Loading trace points... [0.072s] Sorting trace points... [1.231s] Computing alignments... [42.516s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.118s] Computing alignments... [42.644s] Deallocating buffers... [0.033s] Loading trace points... [0s] [715.157s] Deallocating reference... [0.106s] Loading reference sequences... [29.172s] Masking reference... [32.136s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [31.857s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.537s] Building query seed array... [1.731s] Computing hash join... [5.355s] Masking low complexity seeds... [0.186s] Searching alignments... [300.829s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.421s] Building query seed array... [2.315s] Computing hash join... [5.345s] Masking low complexity seeds... [0.183s] Searching alignments... [124.428s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.364s] Building query seed array... [2.126s] Computing hash join... [4.868s] Masking low complexity seeds... [0.194s] Searching alignments... [97.613s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.355s] Building query seed array... [1.752s] Computing hash join... [4.86s] Masking low complexity seeds... [0.182s] Searching alignments... [96.592s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.387s] Building query seed array... [1.654s] Computing hash join... [4.837s] Masking low complexity seeds... [0.175s] Searching alignments... [136.05s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.643s] Building query seed array... [1.885s] Computing hash join... [4.948s] Masking low complexity seeds... [0.174s] Searching alignments... [110.101s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.169s] Building query seed array... [1.933s] Computing hash join... [5.289s] Masking low complexity seeds... [0.193s] Searching alignments... [83.259s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.262s] Building query seed array... [1.662s] Computing hash join... [4.874s] Masking low complexity seeds... [0.163s] Searching alignments... [83.681s] Deallocating memory... [0s] Deallocating buffers... [0.53s] Clearing query masking... [1.167s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.535s] Sorting trace points... [1.246s] Computing alignments... [40.219s] Deallocating buffers... [0.04s] Loading trace points... [0.08s] Sorting trace points... [1.281s] Computing alignments... [41.552s] Deallocating buffers... [0.034s] Loading trace points... [0.078s] Sorting trace points... [1.178s] Computing alignments... [40.912s] Deallocating buffers... [0.035s] Loading trace points... [0.085s] Sorting trace points... [1.349s] Computing alignments... [43.114s] Deallocating buffers... [0.046s] Loading trace points... [0.063s] Sorting trace points... [1.181s] Computing alignments... [42.394s] Deallocating buffers... [0.045s] Loading trace points... [0.068s] Sorting trace points... [1.32s] Computing alignments... [42.586s] Deallocating buffers... [0.046s] Loading trace points... [0.087s] Sorting trace points... [1.127s] Computing alignments... [41.213s] Deallocating buffers... [0.035s] Loading trace points... [0.08s] Sorting trace points... [1.465s] Computing alignments... [44.06s] Deallocating buffers... [0.041s] Loading trace points... [0.051s] Sorting trace points... [1.285s] Computing alignments... [42.481s] Deallocating buffers... [0.042s] Loading trace points... [0.05s] Sorting trace points... [1.114s] Computing alignments... [41.799s] Deallocating buffers... [0.036s] Loading trace points... [0.047s] Sorting trace points... [1.404s] Computing alignments... [41.451s] Deallocating buffers... [0.023s] Loading trace points... [0.061s] Sorting trace points... [1.399s] Computing alignments... [44.187s] Deallocating buffers... [0.045s] Loading trace points... [0.812s] Sorting trace points... [1.528s] Computing alignments... [42.627s] Deallocating buffers... [0.035s] Loading trace points... [0.058s] Sorting trace points... [1.466s] Computing alignments... [43.682s] Deallocating buffers... [0.041s] Loading trace points... [0.047s] Sorting trace points... [1.215s] Computing alignments... [42.22s] Deallocating buffers... [0.043s] Loading trace points... [0s] Sorting trace points... [1.337s] Computing alignments... [40.957s] Deallocating buffers... [0.038s] Loading trace points... [0s] [706.225s] Deallocating reference... [0.09s] Loading reference sequences... [29.207s] Masking reference... [30.859s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [32.296s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.556s] Building query seed array... [1.716s] Computing hash join... [5.028s] Masking low complexity seeds... [0.179s] Searching alignments... [297.416s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.574s] Building query seed array... [1.932s] Computing hash join... [5.26s] Masking low complexity seeds... [0.189s] Searching alignments... [123.603s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.788s] Building query seed array... [2.004s] Computing hash join... [5.024s] Masking low complexity seeds... [0.183s] Searching alignments... [97.089s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.298s] Building query seed array... [1.648s] Computing hash join... [5.352s] Masking low complexity seeds... [0.188s] Searching alignments... [92.964s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.305s] Building query seed array... [1.498s] Computing hash join... [5.018s] Masking low complexity seeds... [0.171s] Searching alignments... [139.38s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.291s] Building query seed array... [1.674s] Computing hash join... [5.288s] Masking low complexity seeds... [0.186s] Searching alignments... [107.002s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.829s] Building query seed array... [1.818s] Computing hash join... [5.106s] Masking low complexity seeds... [0.184s] Searching alignments... [84.321s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.786s] Building query seed array... [1.475s] Computing hash join... [5.114s] Masking low complexity seeds... [0.182s] Searching alignments... [85.399s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [1.216s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.517s] Sorting trace points... [1.342s] Computing alignments... [38.611s] Deallocating buffers... [0.025s] Loading trace points... [0.062s] Sorting trace points... [1.232s] Computing alignments... [40.155s] Deallocating buffers... [0.026s] Loading trace points... [0.066s] Sorting trace points... [1.387s] Computing alignments... [39.637s] Deallocating buffers... [0.026s] Loading trace points... [0.051s] Sorting trace points... [1.502s] Computing alignments... [41.616s] Deallocating buffers... [0.018s] Loading trace points... [0.567s] Sorting trace points... [1.423s] Computing alignments... [40.826s] Deallocating buffers... [0.029s] Loading trace points... [0.075s] Sorting trace points... [1.417s] Computing alignments... [40.888s] Deallocating buffers... [0.025s] Loading trace points... [0.041s] Sorting trace points... [1.386s] Computing alignments... [40.172s] Deallocating buffers... [0.016s] Loading trace points... [0.047s] Sorting trace points... [1.074s] Computing alignments... [42.67s] Deallocating buffers... [0.028s] Loading trace points... [0.088s] Sorting trace points... [1.04s] Computing alignments... [41.104s] Deallocating buffers... [0.029s] Loading trace points... [0.066s] Sorting trace points... [1.455s] Computing alignments... [40.885s] Deallocating buffers... [0.029s] Loading trace points... [0.063s] Sorting trace points... [1.21s] Computing alignments... [40.396s] Deallocating buffers... [0.018s] Loading trace points... [0.088s] Sorting trace points... [1.457s] Computing alignments... [42.917s] Deallocating buffers... [0.03s] Loading trace points... [0.089s] Sorting trace points... [1.369s] Computing alignments... [41.564s] Deallocating buffers... [0.028s] Loading trace points... [0.039s] Sorting trace points... [1.295s] Computing alignments... [42.105s] Deallocating buffers... [0.025s] Loading trace points... [0.086s] Sorting trace points... [1.288s] Computing alignments... [41s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.373s] Computing alignments... [39.913s] Deallocating buffers... [0.021s] Loading trace points... [0s] [685.174s] Deallocating reference... [0.061s] Loading reference sequences... [23.177s] Masking reference... [25.015s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [26.183s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.222s] Building query seed array... [1.687s] Computing hash join... [3.932s] Masking low complexity seeds... [0.166s] Searching alignments... [240.991s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.53s] Building query seed array... [1.89s] Computing hash join... [4.023s] Masking low complexity seeds... [0.168s] Searching alignments... [101.733s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.805s] Building query seed array... [1.967s] Computing hash join... [3.933s] Masking low complexity seeds... [0.172s] Searching alignments... [80.348s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.047s] Building query seed array... [1.606s] Computing hash join... [3.898s] Masking low complexity seeds... [0.164s] Searching alignments... [75.91s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.442s] Building query seed array... [1.515s] Computing hash join... [3.823s] Masking low complexity seeds... [0.159s] Searching alignments... [108.581s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.915s] Building query seed array... [1.723s] Computing hash join... [3.795s] Masking low complexity seeds... [0.151s] Searching alignments... [85.838s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.887s] Building query seed array... [1.801s] Computing hash join... [3.957s] Masking low complexity seeds... [0.16s] Searching alignments... [67.934s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.428s] Building query seed array... [1.513s] Computing hash join... [3.853s] Masking low complexity seeds... [0.158s] Searching alignments... [65.878s] Deallocating memory... [0s] Deallocating buffers... [0.134s] Clearing query masking... [1.199s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.359s] Sorting trace points... [1.077s] Computing alignments... [29.892s] Deallocating buffers... [0.016s] Loading trace points... [0.079s] Sorting trace points... [1.118s] Computing alignments... [30.233s] Deallocating buffers... [0.024s] Loading trace points... [0.083s] Sorting trace points... [0.969s] Computing alignments... [30.507s] Deallocating buffers... [0.023s] Loading trace points... [0.122s] Sorting trace points... [0.978s] Computing alignments... [31.971s] Deallocating buffers... [0.023s] Loading trace points... [0.066s] Sorting trace points... [1.141s] Computing alignments... [31.181s] Deallocating buffers... [0.02s] Loading trace points... [0.072s] Sorting trace points... [0.924s] Computing alignments... [30.978s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [0.993s] Computing alignments... [30.572s] Deallocating buffers... [0.023s] Loading trace points... [0.079s] Sorting trace points... [1.19s] Computing alignments... [33.062s] Deallocating buffers... [0.021s] Loading trace points... [0.055s] Sorting trace points... [1.132s] Computing alignments... [31.338s] Deallocating buffers... [0.022s] Loading trace points... [0.049s] Sorting trace points... [1.125s] Computing alignments... [30.982s] Deallocating buffers... [0.023s] Loading trace points... [0.069s] Sorting trace points... [1.169s] Computing alignments... [31.085s] Deallocating buffers... [0.017s] Loading trace points... [0.057s] Sorting trace points... [1.011s] Computing alignments... [33.177s] Deallocating buffers... [0.023s] Loading trace points... [0.081s] Sorting trace points... [1.14s] Computing alignments... [31.455s] Deallocating buffers... [0.021s] Loading trace points... [0.061s] Sorting trace points... [0.913s] Computing alignments... [31.836s] Deallocating buffers... [0.021s] Loading trace points... [0.047s] Sorting trace points... [1.142s] Computing alignments... [31.228s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.149s] Computing alignments... [30.566s] Deallocating buffers... [0.017s] Loading trace points... [0s] [525.018s] Deallocating reference... [0.047s] Loading reference sequences... [0.074s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2331.36s] [2331.36s] Deallocating queries... [0.076s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.139s] [4.065s] Closing the database... [0s] Cleaning up... [0s] Total time = 29322.9s Reported 2302309470 pairwise alignments, 2302309470 HSPs. 4276280 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-04.trimmed.R1.fastq.gz complete: CH03-04.trimmed.R1.blastx.meganized.daa Now MEGANizing CH03-04.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH03-04.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (313.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,068.1s) Total reads: 4,276,280 With hits: 4,276,280 Alignments: 1,868,030,282 Assig. Taxonomy: 2,304,552 Assig. SEED: 101,903 Assig. EGGNOG: 23,247 Assig. GTDB: 187,193 Assig. EC: 355,987 Assig. INTERPRO2GO: 1,023,634 MinSupport set to: 2138 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.6s) Min-supp. changes: 5,292 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.8s) Min-supp. changes: 3,776 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.4s) Binning reads Syncing 100% (0.2s) Class. Taxonomy: 170 Class. SEED: 492 Class. EGGNOG: 1,587 Class. GTDB: 43 Class. EC: 2,313 Class. INTERPRO2GO: 8,641 Total time: 4,409s Peak memory: 39.3 of 195.3G MEGANization of CH03-04.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-04.trimmed.R2.fastq.gz... 4bc16a29c9031f1099b92859b38e8c64 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-04.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-04.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.341s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.72s] Opening the output file... [0s] Loading query sequences... [71.007s] Masking queries... [19.557s] Algorithm: Double-indexed Building query histograms... [18.352s] Loading reference sequences... [31.019s] Masking reference... [32.143s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [31.927s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.207s] Building query seed array... [1.685s] Computing hash join... [4.991s] Masking low complexity seeds... [0.179s] Searching alignments... [313.757s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.534s] Building query seed array... [1.998s] Computing hash join... [4.958s] Masking low complexity seeds... [0.18s] Searching alignments... [128.327s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.815s] Building query seed array... [1.911s] Computing hash join... [4.87s] Masking low complexity seeds... [0.177s] Searching alignments... [100.883s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.232s] Building query seed array... [1.654s] Computing hash join... [4.764s] Masking low complexity seeds... [0.179s] Searching alignments... [95.51s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.304s] Building query seed array... [1.514s] Computing hash join... [4.961s] Masking low complexity seeds... [0.176s] Searching alignments... [140.651s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.361s] Building query seed array... [1.832s] Computing hash join... [4.768s] Masking low complexity seeds... [0.163s] Searching alignments... [114.461s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.485s] Building query seed array... [1.796s] Computing hash join... [4.732s] Masking low complexity seeds... [0.163s] Searching alignments... [85.104s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.001s] Building query seed array... [1.518s] Computing hash join... [4.945s] Masking low complexity seeds... [0.172s] Searching alignments... [87.476s] Deallocating memory... [0s] Deallocating buffers... [0.162s] Clearing query masking... [1.168s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.443s] Sorting trace points... [1.463s] Computing alignments... [36.628s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.302s] Computing alignments... [37.728s] Deallocating buffers... [0.021s] Loading trace points... [0.061s] Sorting trace points... [1.026s] Computing alignments... [37.828s] Deallocating buffers... [0.019s] Loading trace points... [0.05s] Sorting trace points... [1.084s] Computing alignments... [38.735s] Deallocating buffers... [0.033s] Loading trace points... [0.001s] Sorting trace points... [1.436s] Computing alignments... [37.097s] Deallocating buffers... [0.029s] Loading trace points... [0.074s] Sorting trace points... [1.291s] Computing alignments... [37.401s] Deallocating buffers... [0.018s] Loading trace points... [0.001s] Sorting trace points... [1.431s] Computing alignments... [37.29s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.449s] Computing alignments... [37.824s] Deallocating buffers... [0.017s] Loading trace points... [0.042s] Sorting trace points... [1.438s] Computing alignments... [37.595s] Deallocating buffers... [0.017s] Loading trace points... [0.052s] Sorting trace points... [1.415s] Computing alignments... [37.839s] Deallocating buffers... [0.02s] Loading trace points... [0.058s] Sorting trace points... [1.444s] Computing alignments... [38.611s] Deallocating buffers... [0.03s] Loading trace points... [0.066s] Sorting trace points... [1.374s] Computing alignments... [38.588s] Deallocating buffers... [0.02s] Loading trace points... [0.065s] Sorting trace points... [1.464s] Computing alignments... [37.52s] Deallocating buffers... [0.021s] Loading trace points... [0.061s] Sorting trace points... [1.376s] Computing alignments... [36.689s] Deallocating buffers... [0.025s] Loading trace points... [0.083s] Sorting trace points... [1.417s] Computing alignments... [36.832s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.287s] Computing alignments... [36.378s] Deallocating buffers... [0.029s] Loading trace points... [0s] [630.889s] Deallocating reference... [0.08s] Loading reference sequences... [29.117s] Masking reference... [31.015s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.713s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.459s] Building query seed array... [1.682s] Computing hash join... [5.388s] Masking low complexity seeds... [0.183s] Searching alignments... [310.466s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.474s] Building query seed array... [1.9s] Computing hash join... [5.341s] Masking low complexity seeds... [0.187s] Searching alignments... [126.458s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.54s] Building query seed array... [1.987s] Computing hash join... [5.431s] Masking low complexity seeds... [0.19s] Searching alignments... [100.81s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.19s] Building query seed array... [1.702s] Computing hash join... [5.31s] Masking low complexity seeds... [0.188s] Searching alignments... [96.66s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.248s] Building query seed array... [1.488s] Computing hash join... [4.814s] Masking low complexity seeds... [0.168s] Searching alignments... [141.705s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.366s] Building query seed array... [1.751s] Computing hash join... [5.179s] Masking low complexity seeds... [0.18s] Searching alignments... [110.059s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.202s] Building query seed array... [1.798s] Computing hash join... [5.216s] Masking low complexity seeds... [0.179s] Searching alignments... [84.452s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.93s] Building query seed array... [1.566s] Computing hash join... [4.677s] Masking low complexity seeds... [0.172s] Searching alignments... [86.163s] Deallocating memory... [0s] Deallocating buffers... [0.164s] Clearing query masking... [1.25s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.858s] Sorting trace points... [1.46s] Computing alignments... [38.626s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.193s] Computing alignments... [40.943s] Deallocating buffers... [0.032s] Loading trace points... [0.08s] Sorting trace points... [1.437s] Computing alignments... [40.198s] Deallocating buffers... [0.02s] Loading trace points... [0.067s] Sorting trace points... [1.411s] Computing alignments... [41.476s] Deallocating buffers... [0.037s] Loading trace points... [0.076s] Sorting trace points... [1.331s] Computing alignments... [40.176s] Deallocating buffers... [0.035s] Loading trace points... [0.056s] Sorting trace points... [1.16s] Computing alignments... [39.746s] Deallocating buffers... [0.027s] Loading trace points... [0.714s] Sorting trace points... [1.261s] Computing alignments... [40.23s] Deallocating buffers... [0.029s] Loading trace points... [0.078s] Sorting trace points... [1.419s] Computing alignments... [40.858s] Deallocating buffers... [0.026s] Loading trace points... [0.064s] Sorting trace points... [1.384s] Computing alignments... [39.895s] Deallocating buffers... [0.023s] Loading trace points... [0.059s] Sorting trace points... [1.063s] Computing alignments... [39.529s] Deallocating buffers... [0.02s] Loading trace points... [0.001s] Sorting trace points... [1.399s] Computing alignments... [40.582s] Deallocating buffers... [0.032s] Loading trace points... [0.071s] Sorting trace points... [1.423s] Computing alignments... [41.535s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.476s] Computing alignments... [40.514s] Deallocating buffers... [0.019s] Loading trace points... [0.083s] Sorting trace points... [1.428s] Computing alignments... [39.119s] Deallocating buffers... [0.029s] Loading trace points... [0.077s] Sorting trace points... [1.413s] Computing alignments... [39.478s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.362s] Computing alignments... [37.884s] Deallocating buffers... [0.022s] Loading trace points... [0s] [672.359s] Deallocating reference... [0.06s] Loading reference sequences... [29.068s] Masking reference... [30.883s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.691s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.08s] Building query seed array... [1.677s] Computing hash join... [5.249s] Masking low complexity seeds... [0.185s] Searching alignments... [312.086s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.274s] Building query seed array... [2.316s] Computing hash join... [5.181s] Masking low complexity seeds... [0.182s] Searching alignments... [127.892s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.692s] Building query seed array... [2.152s] Computing hash join... [5.53s] Masking low complexity seeds... [0.179s] Searching alignments... [102.738s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.833s] Building query seed array... [1.834s] Computing hash join... [4.724s] Masking low complexity seeds... [0.177s] Searching alignments... [97.185s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.212s] Building query seed array... [1.6s] Computing hash join... [4.579s] Masking low complexity seeds... [0.169s] Searching alignments... [140.88s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.302s] Building query seed array... [1.917s] Computing hash join... [4.785s] Masking low complexity seeds... [0.163s] Searching alignments... [111.694s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.446s] Building query seed array... [1.953s] Computing hash join... [4.732s] Masking low complexity seeds... [0.166s] Searching alignments... [84.369s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.141s] Building query seed array... [1.656s] Computing hash join... [4.998s] Masking low complexity seeds... [0.214s] Searching alignments... [88.471s] Deallocating memory... [0s] Deallocating buffers... [0.602s] Clearing query masking... [1.204s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.505s] Sorting trace points... [1.431s] Computing alignments... [38.36s] Deallocating buffers... [0.018s] Loading trace points... [0.053s] Sorting trace points... [1.382s] Computing alignments... [40.037s] Deallocating buffers... [0.03s] Loading trace points... [0.069s] Sorting trace points... [1.133s] Computing alignments... [39.568s] Deallocating buffers... [0.018s] Loading trace points... [0.053s] Sorting trace points... [1.309s] Computing alignments... [41.243s] Deallocating buffers... [0.037s] Loading trace points... [0.063s] Sorting trace points... [1.385s] Computing alignments... [39.758s] Deallocating buffers... [0.019s] Loading trace points... [0.062s] Sorting trace points... [1.416s] Computing alignments... [39.302s] Deallocating buffers... [0.027s] Loading trace points... [0.104s] Sorting trace points... [1.159s] Computing alignments... [39.389s] Deallocating buffers... [0.027s] Loading trace points... [0.07s] Sorting trace points... [1.463s] Computing alignments... [40.318s] Deallocating buffers... [0.017s] Loading trace points... [0.052s] Sorting trace points... [1.424s] Computing alignments... [39.933s] Deallocating buffers... [0.028s] Loading trace points... [0.095s] Sorting trace points... [1.281s] Computing alignments... [38.669s] Deallocating buffers... [0.029s] Loading trace points... [0.142s] Sorting trace points... [1.027s] Computing alignments... [39.878s] Deallocating buffers... [0.032s] Loading trace points... [0.065s] Sorting trace points... [1.424s] Computing alignments... [40.477s] Deallocating buffers... [0.034s] Loading trace points... [0.081s] Sorting trace points... [1.099s] Computing alignments... [40.12s] Deallocating buffers... [0.03s] Loading trace points... [0.092s] Sorting trace points... [1.2s] Computing alignments... [38.753s] Deallocating buffers... [0.028s] Loading trace points... [0.045s] Sorting trace points... [1.038s] Computing alignments... [38.861s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.162s] Computing alignments... [37.661s] Deallocating buffers... [0.027s] Loading trace points... [0s] [661.738s] Deallocating reference... [0.084s] Loading reference sequences... [30.738s] Masking reference... [31.849s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.525s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.943s] Building query seed array... [1.627s] Computing hash join... [4.896s] Masking low complexity seeds... [0.175s] Searching alignments... [313.463s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.337s] Building query seed array... [1.963s] Computing hash join... [5.281s] Masking low complexity seeds... [0.176s] Searching alignments... [126.265s] Deallocating memory... [0.005s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.167s] Building query seed array... [1.989s] Computing hash join... [4.952s] Masking low complexity seeds... [0.18s] Searching alignments... [99.37s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.827s] Building query seed array... [1.629s] Computing hash join... [4.727s] Masking low complexity seeds... [0.174s] Searching alignments... [98.033s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.798s] Building query seed array... [1.472s] Computing hash join... [5.184s] Masking low complexity seeds... [0.189s] Searching alignments... [144.706s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.45s] Building query seed array... [1.763s] Computing hash join... [5.175s] Masking low complexity seeds... [0.172s] Searching alignments... [113s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.854s] Building query seed array... [1.803s] Computing hash join... [4.663s] Masking low complexity seeds... [0.163s] Searching alignments... [84.428s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.875s] Building query seed array... [1.506s] Computing hash join... [4.918s] Masking low complexity seeds... [0.184s] Searching alignments... [89.346s] Deallocating memory... [0s] Deallocating buffers... [0.147s] Clearing query masking... [1.208s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.731s] Sorting trace points... [1.411s] Computing alignments... [39.551s] Deallocating buffers... [0.028s] Loading trace points... [0.066s] Sorting trace points... [1.449s] Computing alignments... [41.476s] Deallocating buffers... [0.018s] Loading trace points... [0.074s] Sorting trace points... [1.313s] Computing alignments... [41.132s] Deallocating buffers... [0.018s] Loading trace points... [0.042s] Sorting trace points... [1.181s] Computing alignments... [42.394s] Deallocating buffers... [0.029s] Loading trace points... [0.096s] Sorting trace points... [1.349s] Computing alignments... [41.324s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.507s] Computing alignments... [40.769s] Deallocating buffers... [0.025s] Loading trace points... [0.363s] Sorting trace points... [1.436s] Computing alignments... [41.059s] Deallocating buffers... [0.026s] Loading trace points... [0.099s] Sorting trace points... [1.105s] Computing alignments... [41.974s] Deallocating buffers... [0.02s] Loading trace points... [0.07s] Sorting trace points... [1.424s] Computing alignments... [40.827s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [0.983s] Computing alignments... [40.406s] Deallocating buffers... [0.027s] Loading trace points... [0.061s] Sorting trace points... [1.423s] Computing alignments... [41.441s] Deallocating buffers... [0.026s] Loading trace points... [0.063s] Sorting trace points... [1.513s] Computing alignments... [42.392s] Deallocating buffers... [0.027s] Loading trace points... [0.075s] Sorting trace points... [1.491s] Computing alignments... [41.774s] Deallocating buffers... [0.025s] Loading trace points... [0.297s] Sorting trace points... [1.416s] Computing alignments... [40.565s] Deallocating buffers... [0.026s] Loading trace points... [0.065s] Sorting trace points... [1.072s] Computing alignments... [40.845s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.164s] Computing alignments... [39.266s] Deallocating buffers... [0.018s] Loading trace points... [0s] [688.109s] Deallocating reference... [0.058s] Loading reference sequences... [32.275s] Masking reference... [31.759s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.389s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.226s] Building query seed array... [1.653s] Computing hash join... [5.417s] Masking low complexity seeds... [0.187s] Searching alignments... [313.129s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.474s] Building query seed array... [1.858s] Computing hash join... [5.161s] Masking low complexity seeds... [0.173s] Searching alignments... [125.595s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.463s] Building query seed array... [1.976s] Computing hash join... [4.8s] Masking low complexity seeds... [0.18s] Searching alignments... [101.724s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.379s] Building query seed array... [1.651s] Computing hash join... [5.235s] Masking low complexity seeds... [0.187s] Searching alignments... [96.903s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.992s] Building query seed array... [1.539s] Computing hash join... [5.037s] Masking low complexity seeds... [0.17s] Searching alignments... [139.54s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.701s] Building query seed array... [1.75s] Computing hash join... [4.818s] Masking low complexity seeds... [0.171s] Searching alignments... [109.962s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.077s] Building query seed array... [1.826s] Computing hash join... [5.267s] Masking low complexity seeds... [0.178s] Searching alignments... [84.253s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.845s] Building query seed array... [1.456s] Computing hash join... [5.116s] Masking low complexity seeds... [0.178s] Searching alignments... [86.548s] Deallocating memory... [0s] Deallocating buffers... [0.157s] Clearing query masking... [1.2s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.532s] Sorting trace points... [1.418s] Computing alignments... [41.702s] Deallocating buffers... [0.038s] Loading trace points... [0.074s] Sorting trace points... [1.215s] Computing alignments... [43.842s] Deallocating buffers... [0.038s] Loading trace points... [0.001s] Sorting trace points... [1.36s] Computing alignments... [43.537s] Deallocating buffers... [0.037s] Loading trace points... [0.116s] Sorting trace points... [1.337s] Computing alignments... [44.847s] Deallocating buffers... [0.039s] Loading trace points... [0.065s] Sorting trace points... [1.224s] Computing alignments... [43.582s] Deallocating buffers... [0.03s] Loading trace points... [0.047s] Sorting trace points... [1.178s] Computing alignments... [42.862s] Deallocating buffers... [0.037s] Loading trace points... [0.099s] Sorting trace points... [1.273s] Computing alignments... [43.116s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.381s] Computing alignments... [44.157s] Deallocating buffers... [0.039s] Loading trace points... [0.074s] Sorting trace points... [1.469s] Computing alignments... [43.396s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.414s] Computing alignments... [41.977s] Deallocating buffers... [0.027s] Loading trace points... [0.082s] Sorting trace points... [1.122s] Computing alignments... [43.341s] Deallocating buffers... [0.037s] Loading trace points... [0.084s] Sorting trace points... [1.357s] Computing alignments... [44.497s] Deallocating buffers... [0.04s] Loading trace points... [0.085s] Sorting trace points... [1.477s] Computing alignments... [44.195s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [1.373s] Computing alignments... [42.046s] Deallocating buffers... [0.038s] Loading trace points... [0.052s] Sorting trace points... [1.065s] Computing alignments... [42.781s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.361s] Computing alignments... [41.007s] Deallocating buffers... [0.036s] Loading trace points... [0s] [720.972s] Deallocating reference... [0.088s] Loading reference sequences... [254.727s] Masking reference... [30.863s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.308s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.499s] Building query seed array... [1.71s] Computing hash join... [5.3s] Masking low complexity seeds... [0.176s] Searching alignments... [313.718s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.753s] Building query seed array... [2.217s] Computing hash join... [5.316s] Masking low complexity seeds... [0.206s] Searching alignments... [124.617s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.132s] Building query seed array... [2.108s] Computing hash join... [5.121s] Masking low complexity seeds... [0.188s] Searching alignments... [98.205s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.096s] Building query seed array... [1.681s] Computing hash join... [5.369s] Masking low complexity seeds... [0.189s] Searching alignments... [95.141s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.93s] Building query seed array... [1.632s] Computing hash join... [5.11s] Masking low complexity seeds... [0.167s] Searching alignments... [143.483s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.686s] Building query seed array... [1.91s] Computing hash join... [5.232s] Masking low complexity seeds... [0.202s] Searching alignments... [111.224s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.437s] Building query seed array... [1.994s] Computing hash join... [4.658s] Masking low complexity seeds... [0.162s] Searching alignments... [83.944s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.961s] Building query seed array... [1.62s] Computing hash join... [4.667s] Masking low complexity seeds... [0.169s] Searching alignments... [87.581s] Deallocating memory... [0s] Deallocating buffers... [0.482s] Clearing query masking... [1.167s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.833s] Sorting trace points... [1.348s] Computing alignments... [36.194s] Deallocating buffers... [0.024s] Loading trace points... [0.091s] Sorting trace points... [1.046s] Computing alignments... [36.994s] Deallocating buffers... [0.019s] Loading trace points... [0.077s] Sorting trace points... [1.346s] Computing alignments... [37.844s] Deallocating buffers... [0.025s] Loading trace points... [0.079s] Sorting trace points... [1.435s] Computing alignments... [38.328s] Deallocating buffers... [0.035s] Loading trace points... [0.341s] Sorting trace points... [1.303s] Computing alignments... [37.318s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [1.426s] Computing alignments... [37.22s] Deallocating buffers... [0.029s] Loading trace points... [0.064s] Sorting trace points... [1.137s] Computing alignments... [37.106s] Deallocating buffers... [0.019s] Loading trace points... [0.084s] Sorting trace points... [1.392s] Computing alignments... [37.17s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.12s] Computing alignments... [37.333s] Deallocating buffers... [0.019s] Loading trace points... [0.04s] Sorting trace points... [1.105s] Computing alignments... [36.901s] Deallocating buffers... [0.026s] Loading trace points... [0.093s] Sorting trace points... [1.119s] Computing alignments... [37.976s] Deallocating buffers... [0.03s] Loading trace points... [0.051s] Sorting trace points... [1.214s] Computing alignments... [38.022s] Deallocating buffers... [0.02s] Loading trace points... [0.093s] Sorting trace points... [1.433s] Computing alignments... [37.04s] Deallocating buffers... [0.017s] Loading trace points... [0.105s] Sorting trace points... [1.339s] Computing alignments... [36.831s] Deallocating buffers... [0.029s] Loading trace points... [0.053s] Sorting trace points... [1.415s] Computing alignments... [36.378s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.318s] Computing alignments... [35.771s] Deallocating buffers... [0.029s] Loading trace points... [0s] [624.633s] Deallocating reference... [0.08s] Loading reference sequences... [32.631s] Masking reference... [31.735s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.43s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.23s] Building query seed array... [1.724s] Computing hash join... [5.3s] Masking low complexity seeds... [0.18s] Searching alignments... [311.665s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.325s] Building query seed array... [2.245s] Computing hash join... [5.032s] Masking low complexity seeds... [0.19s] Searching alignments... [128.778s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.678s] Building query seed array... [2.15s] Computing hash join... [4.855s] Masking low complexity seeds... [0.188s] Searching alignments... [100.601s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.21s] Building query seed array... [1.767s] Computing hash join... [4.941s] Masking low complexity seeds... [0.175s] Searching alignments... [95.396s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.222s] Building query seed array... [1.551s] Computing hash join... [5.248s] Masking low complexity seeds... [0.181s] Searching alignments... [137.683s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.263s] Building query seed array... [1.785s] Computing hash join... [4.696s] Masking low complexity seeds... [0.188s] Searching alignments... [111.449s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.57s] Building query seed array... [1.933s] Computing hash join... [5.509s] Masking low complexity seeds... [0.216s] Searching alignments... [85.726s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.799s] Building query seed array... [1.582s] Computing hash join... [4.695s] Masking low complexity seeds... [0.162s] Searching alignments... [87.664s] Deallocating memory... [0s] Deallocating buffers... [0.975s] Clearing query masking... [1.17s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.502s] Sorting trace points... [1.42s] Computing alignments... [36.021s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [1.418s] Computing alignments... [37.152s] Deallocating buffers... [0.018s] Loading trace points... [0.075s] Sorting trace points... [1.437s] Computing alignments... [37.822s] Deallocating buffers... [0.026s] Loading trace points... [0.082s] Sorting trace points... [1.471s] Computing alignments... [38.448s] Deallocating buffers... [0.032s] Loading trace points... [0.085s] Sorting trace points... [1.397s] Computing alignments... [37.532s] Deallocating buffers... [0.017s] Loading trace points... [0.041s] Sorting trace points... [1.404s] Computing alignments... [37.436s] Deallocating buffers... [0.021s] Loading trace points... [0.077s] Sorting trace points... [1.377s] Computing alignments... [37.205s] Deallocating buffers... [0.02s] Loading trace points... [0.066s] Sorting trace points... [1.423s] Computing alignments... [37.337s] Deallocating buffers... [0.02s] Loading trace points... [0.072s] Sorting trace points... [1.379s] Computing alignments... [37.482s] Deallocating buffers... [0.017s] Loading trace points... [0.043s] Sorting trace points... [1.447s] Computing alignments... [37.282s] Deallocating buffers... [0.029s] Loading trace points... [0.072s] Sorting trace points... [1.404s] Computing alignments... [38.101s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.323s] Computing alignments... [38.203s] Deallocating buffers... [0.018s] Loading trace points... [0.081s] Sorting trace points... [1.067s] Computing alignments... [37.221s] Deallocating buffers... [0.019s] Loading trace points... [0.073s] Sorting trace points... [1.382s] Computing alignments... [36.585s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.358s] Computing alignments... [36.708s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.329s] Computing alignments... [35.979s] Deallocating buffers... [0.029s] Loading trace points... [0s] [627.534s] Deallocating reference... [0.063s] Loading reference sequences... [29.217s] Masking reference... [32.078s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.164s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.361s] Building query seed array... [1.699s] Computing hash join... [5.254s] Masking low complexity seeds... [0.185s] Searching alignments... [311.409s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.381s] Building query seed array... [2.297s] Computing hash join... [5.328s] Masking low complexity seeds... [0.183s] Searching alignments... [127.164s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.566s] Building query seed array... [2.154s] Computing hash join... [4.824s] Masking low complexity seeds... [0.216s] Searching alignments... [102.791s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.593s] Building query seed array... [1.762s] Computing hash join... [4.861s] Masking low complexity seeds... [0.18s] Searching alignments... [95.304s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.212s] Building query seed array... [1.676s] Computing hash join... [5.037s] Masking low complexity seeds... [0.178s] Searching alignments... [139.612s] Deallocating memory... [0.003s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.417s] Building query seed array... [1.894s] Computing hash join... [4.625s] Masking low complexity seeds... [0.16s] Searching alignments... [114.199s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.71s] Building query seed array... [1.979s] Computing hash join... [4.99s] Masking low complexity seeds... [0.165s] Searching alignments... [84.115s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.919s] Building query seed array... [1.663s] Computing hash join... [4.843s] Masking low complexity seeds... [0.165s] Searching alignments... [86.893s] Deallocating memory... [0s] Deallocating buffers... [0.57s] Clearing query masking... [1.141s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.546s] Sorting trace points... [1.456s] Computing alignments... [35.171s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.422s] Computing alignments... [36.078s] Deallocating buffers... [0.021s] Loading trace points... [0.068s] Sorting trace points... [1.376s] Computing alignments... [36.391s] Deallocating buffers... [0.021s] Loading trace points... [0.061s] Sorting trace points... [1.061s] Computing alignments... [37.552s] Deallocating buffers... [0.033s] Loading trace points... [0.068s] Sorting trace points... [1.389s] Computing alignments... [35.95s] Deallocating buffers... [0.017s] Loading trace points... [0.044s] Sorting trace points... [1.587s] Computing alignments... [35.919s] Deallocating buffers... [0.02s] Loading trace points... [0.072s] Sorting trace points... [1.406s] Computing alignments... [35.733s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.049s] Computing alignments... [36.297s] Deallocating buffers... [0.02s] Loading trace points... [0.06s] Sorting trace points... [1.039s] Computing alignments... [36.318s] Deallocating buffers... [0.019s] Loading trace points... [0.031s] Sorting trace points... [1.383s] Computing alignments... [36.014s] Deallocating buffers... [0.025s] Loading trace points... [0.085s] Sorting trace points... [1.382s] Computing alignments... [36.833s] Deallocating buffers... [0.031s] Loading trace points... [0.046s] Sorting trace points... [1.478s] Computing alignments... [36.761s] Deallocating buffers... [0.019s] Loading trace points... [0.073s] Sorting trace points... [1.102s] Computing alignments... [36.044s] Deallocating buffers... [0.018s] Loading trace points... [0.06s] Sorting trace points... [1.417s] Computing alignments... [35.223s] Deallocating buffers... [0.017s] Loading trace points... [0.048s] Sorting trace points... [1.417s] Computing alignments... [35.539s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.356s] Computing alignments... [35.377s] Deallocating buffers... [0.026s] Loading trace points... [0s] [607.39s] Deallocating reference... [0.084s] Loading reference sequences... [30.199s] Masking reference... [32.031s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [31.819s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.27s] Building query seed array... [1.651s] Computing hash join... [5.254s] Masking low complexity seeds... [0.186s] Searching alignments... [314.6s] Deallocating memory... [0.003s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.404s] Building query seed array... [1.9s] Computing hash join... [5.513s] Masking low complexity seeds... [0.193s] Searching alignments... [128.11s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.504s] Building query seed array... [2.015s] Computing hash join... [5.268s] Masking low complexity seeds... [0.186s] Searching alignments... [99.951s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.192s] Building query seed array... [1.648s] Computing hash join... [5.21s] Masking low complexity seeds... [0.181s] Searching alignments... [98.273s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.386s] Building query seed array... [1.512s] Computing hash join... [4.942s] Masking low complexity seeds... [0.176s] Searching alignments... [144.527s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.09s] Building query seed array... [1.691s] Computing hash join... [4.914s] Masking low complexity seeds... [0.18s] Searching alignments... [112.027s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.128s] Building query seed array... [1.782s] Computing hash join... [5.04s] Masking low complexity seeds... [0.174s] Searching alignments... [84.75s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.74s] Building query seed array... [1.521s] Computing hash join... [5.06s] Masking low complexity seeds... [0.167s] Searching alignments... [87.299s] Deallocating memory... [0s] Deallocating buffers... [0.157s] Clearing query masking... [1.186s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.606s] Sorting trace points... [1.382s] Computing alignments... [40.379s] Deallocating buffers... [0.041s] Loading trace points... [0.096s] Sorting trace points... [1.315s] Computing alignments... [42.486s] Deallocating buffers... [0.045s] Loading trace points... [0.08s] Sorting trace points... [1.322s] Computing alignments... [41.715s] Deallocating buffers... [0.039s] Loading trace points... [0.498s] Sorting trace points... [1.441s] Computing alignments... [43.258s] Deallocating buffers... [0.032s] Loading trace points... [0.051s] Sorting trace points... [1.462s] Computing alignments... [41.944s] Deallocating buffers... [0.027s] Loading trace points... [0.047s] Sorting trace points... [1.438s] Computing alignments... [41.443s] Deallocating buffers... [0.035s] Loading trace points... [0.058s] Sorting trace points... [1.41s] Computing alignments... [41.644s] Deallocating buffers... [0.037s] Loading trace points... [0.08s] Sorting trace points... [1.459s] Computing alignments... [42.425s] Deallocating buffers... [0.038s] Loading trace points... [0.086s] Sorting trace points... [1.39s] Computing alignments... [41.824s] Deallocating buffers... [0.041s] Loading trace points... [0.06s] Sorting trace points... [1.39s] Computing alignments... [40.967s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.443s] Computing alignments... [41.958s] Deallocating buffers... [0.03s] Loading trace points... [0.072s] Sorting trace points... [1.407s] Computing alignments... [43.224s] Deallocating buffers... [0.036s] Loading trace points... [0.088s] Sorting trace points... [1.428s] Computing alignments... [42.647s] Deallocating buffers... [0.041s] Loading trace points... [0.065s] Sorting trace points... [1.307s] Computing alignments... [40.476s] Deallocating buffers... [0.039s] Loading trace points... [0.051s] Sorting trace points... [1.412s] Computing alignments... [41.071s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.306s] Computing alignments... [39.454s] Deallocating buffers... [0.034s] Loading trace points... [0s] [698.881s] Deallocating reference... [0.09s] Loading reference sequences... [31.33s] Masking reference... [31.845s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.461s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.197s] Building query seed array... [1.733s] Computing hash join... [5.43s] Masking low complexity seeds... [0.183s] Searching alignments... [309.32s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.413s] Building query seed array... [2.347s] Computing hash join... [5.335s] Masking low complexity seeds... [0.196s] Searching alignments... [126.787s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.813s] Building query seed array... [2.192s] Computing hash join... [5.163s] Masking low complexity seeds... [0.184s] Searching alignments... [100.143s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.369s] Building query seed array... [1.808s] Computing hash join... [5.08s] Masking low complexity seeds... [0.236s] Searching alignments... [95.596s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.122s] Building query seed array... [1.656s] Computing hash join... [4.799s] Masking low complexity seeds... [0.173s] Searching alignments... [142.941s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.896s] Building query seed array... [1.916s] Computing hash join... [5.289s] Masking low complexity seeds... [0.172s] Searching alignments... [111.167s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.748s] Building query seed array... [1.919s] Computing hash join... [4.718s] Masking low complexity seeds... [0.17s] Searching alignments... [84.563s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.298s] Building query seed array... [1.659s] Computing hash join... [4.992s] Masking low complexity seeds... [0.18s] Searching alignments... [88.515s] Deallocating memory... [0s] Deallocating buffers... [0.729s] Clearing query masking... [1.225s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.56s] Sorting trace points... [1.476s] Computing alignments... [34.186s] Deallocating buffers... [0.017s] Loading trace points... [0.06s] Sorting trace points... [1.155s] Computing alignments... [35.349s] Deallocating buffers... [0.018s] Loading trace points... [0.051s] Sorting trace points... [1.348s] Computing alignments... [35.603s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.423s] Computing alignments... [36.293s] Deallocating buffers... [0.031s] Loading trace points... [0.059s] Sorting trace points... [1.382s] Computing alignments... [34.929s] Deallocating buffers... [0.022s] Loading trace points... [0.091s] Sorting trace points... [1.131s] Computing alignments... [35.292s] Deallocating buffers... [0.019s] Loading trace points... [0.058s] Sorting trace points... [1.436s] Computing alignments... [34.816s] Deallocating buffers... [0.017s] Loading trace points... [0.075s] Sorting trace points... [1.382s] Computing alignments... [35.551s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.411s] Computing alignments... [35.302s] Deallocating buffers... [0.017s] Loading trace points... [0.045s] Sorting trace points... [1.385s] Computing alignments... [35.169s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.423s] Computing alignments... [35.594s] Deallocating buffers... [0.018s] Loading trace points... [0.487s] Sorting trace points... [1.437s] Computing alignments... [35.913s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.419s] Computing alignments... [35.164s] Deallocating buffers... [0.025s] Loading trace points... [0.059s] Sorting trace points... [1.456s] Computing alignments... [34.569s] Deallocating buffers... [0.017s] Loading trace points... [0.067s] Sorting trace points... [1.366s] Computing alignments... [34.533s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.316s] Computing alignments... [33.604s] Deallocating buffers... [0.021s] Loading trace points... [0s] [593.044s] Deallocating reference... [0.058s] Loading reference sequences... [29.175s] Masking reference... [30.854s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.725s] Allocating buffers... [0.001s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.179s] Building query seed array... [1.719s] Computing hash join... [5.696s] Masking low complexity seeds... [0.19s] Searching alignments... [319.381s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.829s] Building query seed array... [2.226s] Computing hash join... [5.031s] Masking low complexity seeds... [0.194s] Searching alignments... [128.073s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.199s] Building query seed array... [2.183s] Computing hash join... [4.898s] Masking low complexity seeds... [0.173s] Searching alignments... [99.718s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.602s] Building query seed array... [1.77s] Computing hash join... [4.816s] Masking low complexity seeds... [0.191s] Searching alignments... [95.925s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.328s] Building query seed array... [1.642s] Computing hash join... [4.618s] Masking low complexity seeds... [0.178s] Searching alignments... [141.13s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.32s] Building query seed array... [1.876s] Computing hash join... [4.696s] Masking low complexity seeds... [0.178s] Searching alignments... [109.57s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.655s] Building query seed array... [1.975s] Computing hash join... [4.844s] Masking low complexity seeds... [0.204s] Searching alignments... [83.318s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.061s] Building query seed array... [1.659s] Computing hash join... [5.112s] Masking low complexity seeds... [0.175s] Searching alignments... [88.605s] Deallocating memory... [0s] Deallocating buffers... [1.184s] Clearing query masking... [1.115s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.699s] Sorting trace points... [1.09s] Computing alignments... [41.69s] Deallocating buffers... [0.032s] Loading trace points... [0.079s] Sorting trace points... [1.437s] Computing alignments... [43.727s] Deallocating buffers... [0.027s] Loading trace points... [0.001s] Sorting trace points... [1.396s] Computing alignments... [43.172s] Deallocating buffers... [0.024s] Loading trace points... [0.087s] Sorting trace points... [1.062s] Computing alignments... [44.681s] Deallocating buffers... [0.035s] Loading trace points... [0.063s] Sorting trace points... [1.319s] Computing alignments... [43.416s] Deallocating buffers... [0.037s] Loading trace points... [0.058s] Sorting trace points... [1.256s] Computing alignments... [43.029s] Deallocating buffers... [0.028s] Loading trace points... [0.078s] Sorting trace points... [1.286s] Computing alignments... [43.859s] Deallocating buffers... [0.03s] Loading trace points... [0.074s] Sorting trace points... [1.449s] Computing alignments... [43.684s] Deallocating buffers... [0.037s] Loading trace points... [0.25s] Sorting trace points... [1.085s] Computing alignments... [43.605s] Deallocating buffers... [0.037s] Loading trace points... [0.049s] Sorting trace points... [1.24s] Computing alignments... [42.287s] Deallocating buffers... [0.018s] Loading trace points... [0.055s] Sorting trace points... [1.458s] Computing alignments... [43.309s] Deallocating buffers... [0.026s] Loading trace points... [0.053s] Sorting trace points... [1.344s] Computing alignments... [44.33s] Deallocating buffers... [0.032s] Loading trace points... [0.216s] Sorting trace points... [1.385s] Computing alignments... [43.92s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.195s] Computing alignments... [42.202s] Deallocating buffers... [0.026s] Loading trace points... [0.083s] Sorting trace points... [1.101s] Computing alignments... [42.851s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.229s] Computing alignments... [41.11s] Deallocating buffers... [0.029s] Loading trace points... [0s] [721.571s] Deallocating reference... [0.089s] Loading reference sequences... [252.583s] Masking reference... [31.526s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.177s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.299s] Building query seed array... [1.709s] Computing hash join... [5.302s] Masking low complexity seeds... [0.18s] Searching alignments... [317.172s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.426s] Building query seed array... [2.287s] Computing hash join... [4.847s] Masking low complexity seeds... [0.178s] Searching alignments... [128.659s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.681s] Building query seed array... [2.127s] Computing hash join... [5s] Masking low complexity seeds... [0.184s] Searching alignments... [99.428s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.016s] Building query seed array... [1.878s] Computing hash join... [5.331s] Masking low complexity seeds... [0.185s] Searching alignments... [95.639s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.129s] Building query seed array... [1.641s] Computing hash join... [5.308s] Masking low complexity seeds... [0.192s] Searching alignments... [143.975s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.456s] Building query seed array... [1.875s] Computing hash join... [4.773s] Masking low complexity seeds... [0.168s] Searching alignments... [113.03s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.28s] Building query seed array... [2.017s] Computing hash join... [5.233s] Masking low complexity seeds... [0.167s] Searching alignments... [84.738s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.402s] Building query seed array... [1.671s] Computing hash join... [4.85s] Masking low complexity seeds... [0.199s] Searching alignments... [87.702s] Deallocating memory... [0s] Deallocating buffers... [0.652s] Clearing query masking... [1.178s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.195s] Sorting trace points... [1.359s] Computing alignments... [41.352s] Deallocating buffers... [0.046s] Loading trace points... [0s] Sorting trace points... [1.084s] Computing alignments... [43.356s] Deallocating buffers... [0.05s] Loading trace points... [0.064s] Sorting trace points... [1.213s] Computing alignments... [42.78s] Deallocating buffers... [0.054s] Loading trace points... [0.064s] Sorting trace points... [1.242s] Computing alignments... [44.398s] Deallocating buffers... [0.056s] Loading trace points... [0.094s] Sorting trace points... [1.408s] Computing alignments... [42.482s] Deallocating buffers... [0.034s] Loading trace points... [0.045s] Sorting trace points... [1.064s] Computing alignments... [42.636s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [1.372s] Computing alignments... [42.675s] Deallocating buffers... [0.058s] Loading trace points... [0.061s] Sorting trace points... [1.274s] Computing alignments... [43.525s] Deallocating buffers... [0.039s] Loading trace points... [0.058s] Sorting trace points... [1.205s] Computing alignments... [42.727s] Deallocating buffers... [0.05s] Loading trace points... [0.059s] Sorting trace points... [1.48s] Computing alignments... [41.562s] Deallocating buffers... [0.043s] Loading trace points... [0.072s] Sorting trace points... [1.469s] Computing alignments... [42.376s] Deallocating buffers... [0.042s] Loading trace points... [0.092s] Sorting trace points... [1.219s] Computing alignments... [43.828s] Deallocating buffers... [0.037s] Loading trace points... [0.062s] Sorting trace points... [1.138s] Computing alignments... [43.699s] Deallocating buffers... [0.039s] Loading trace points... [0.045s] Sorting trace points... [1.203s] Computing alignments... [41.543s] Deallocating buffers... [0.042s] Loading trace points... [0.669s] Sorting trace points... [1.428s] Computing alignments... [41.627s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.326s] Computing alignments... [40.502s] Deallocating buffers... [0.041s] Loading trace points... [0s] [711.945s] Deallocating reference... [0.085s] Loading reference sequences... [29.444s] Masking reference... [31.061s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.084s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.22s] Building query seed array... [1.705s] Computing hash join... [5.386s] Masking low complexity seeds... [0.183s] Searching alignments... [308.901s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.732s] Building query seed array... [2.347s] Computing hash join... [5.107s] Masking low complexity seeds... [0.195s] Searching alignments... [127.41s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.842s] Building query seed array... [2.109s] Computing hash join... [4.997s] Masking low complexity seeds... [0.18s] Searching alignments... [101.804s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.202s] Building query seed array... [1.775s] Computing hash join... [4.792s] Masking low complexity seeds... [0.202s] Searching alignments... [94.398s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.603s] Building query seed array... [1.575s] Computing hash join... [5.214s] Masking low complexity seeds... [0.174s] Searching alignments... [142.623s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.652s] Building query seed array... [1.852s] Computing hash join... [4.644s] Masking low complexity seeds... [0.168s] Searching alignments... [114.822s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.055s] Building query seed array... [1.936s] Computing hash join... [4.693s] Masking low complexity seeds... [0.166s] Searching alignments... [85.032s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.363s] Building query seed array... [1.707s] Computing hash join... [4.841s] Masking low complexity seeds... [0.165s] Searching alignments... [87.759s] Deallocating memory... [0s] Deallocating buffers... [0.774s] Clearing query masking... [1.208s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.66s] Sorting trace points... [1.07s] Computing alignments... [40.022s] Deallocating buffers... [0.026s] Loading trace points... [0.461s] Sorting trace points... [1.321s] Computing alignments... [41.821s] Deallocating buffers... [0.026s] Loading trace points... [0.072s] Sorting trace points... [1.446s] Computing alignments... [41.547s] Deallocating buffers... [0.026s] Loading trace points... [0.077s] Sorting trace points... [1.46s] Computing alignments... [42.689s] Deallocating buffers... [0.027s] Loading trace points... [0.059s] Sorting trace points... [1.378s] Computing alignments... [41.579s] Deallocating buffers... [0.02s] Loading trace points... [0.047s] Sorting trace points... [1.078s] Computing alignments... [41.232s] Deallocating buffers... [0.027s] Loading trace points... [0.07s] Sorting trace points... [1.133s] Computing alignments... [41.821s] Deallocating buffers... [0.026s] Loading trace points... [0.066s] Sorting trace points... [1.094s] Computing alignments... [42.147s] Deallocating buffers... [0.028s] Loading trace points... [0.077s] Sorting trace points... [1.451s] Computing alignments... [41.914s] Deallocating buffers... [0.031s] Loading trace points... [0.053s] Sorting trace points... [1.062s] Computing alignments... [40.654s] Deallocating buffers... [0.027s] Loading trace points... [0.058s] Sorting trace points... [1.462s] Computing alignments... [41.49s] Deallocating buffers... [0.026s] Loading trace points... [0.054s] Sorting trace points... [1.105s] Computing alignments... [42.251s] Deallocating buffers... [0.033s] Loading trace points... [0.002s] Sorting trace points... [1.362s] Computing alignments... [42.011s] Deallocating buffers... [0.025s] Loading trace points... [0.133s] Sorting trace points... [1.079s] Computing alignments... [40.472s] Deallocating buffers... [0.027s] Loading trace points... [0.078s] Sorting trace points... [1.369s] Computing alignments... [40.559s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.383s] Computing alignments... [39.264s] Deallocating buffers... [0.028s] Loading trace points... [0s] [691.24s] Deallocating reference... [0.088s] Loading reference sequences... [23.844s] Masking reference... [25.011s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.007s] Building reference histograms... [27.014s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.605s] Building query seed array... [1.718s] Computing hash join... [4.214s] Masking low complexity seeds... [0.167s] Searching alignments... [251.481s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.574s] Building query seed array... [2.066s] Computing hash join... [3.997s] Masking low complexity seeds... [0.17s] Searching alignments... [102.783s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.777s] Building query seed array... [2.042s] Computing hash join... [4.005s] Masking low complexity seeds... [0.17s] Searching alignments... [81.942s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.066s] Building query seed array... [1.667s] Computing hash join... [3.997s] Masking low complexity seeds... [0.163s] Searching alignments... [77s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.282s] Building query seed array... [1.548s] Computing hash join... [3.755s] Masking low complexity seeds... [0.151s] Searching alignments... [115.827s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.276s] Building query seed array... [1.756s] Computing hash join... [3.808s] Masking low complexity seeds... [0.156s] Searching alignments... [91.257s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.241s] Building query seed array... [1.874s] Computing hash join... [3.795s] Masking low complexity seeds... [0.151s] Searching alignments... [67.994s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.087s] Building query seed array... [1.582s] Computing hash join... [3.862s] Masking low complexity seeds... [0.158s] Searching alignments... [70.69s] Deallocating memory... [0s] Deallocating buffers... [0.28s] Clearing query masking... [1.225s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.233s] Sorting trace points... [1.182s] Computing alignments... [30.45s] Deallocating buffers... [0.02s] Loading trace points... [0.573s] Sorting trace points... [1.177s] Computing alignments... [32.087s] Deallocating buffers... [0.024s] Loading trace points... [0.056s] Sorting trace points... [1.15s] Computing alignments... [31.887s] Deallocating buffers... [0.021s] Loading trace points... [0.073s] Sorting trace points... [1.205s] Computing alignments... [32.95s] Deallocating buffers... [0.026s] Loading trace points... [0.05s] Sorting trace points... [0.864s] Computing alignments... [31.491s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [0.85s] Computing alignments... [31.622s] Deallocating buffers... [0.023s] Loading trace points... [0.146s] Sorting trace points... [1.163s] Computing alignments... [31.535s] Deallocating buffers... [0.021s] Loading trace points... [0.052s] Sorting trace points... [1.214s] Computing alignments... [32.292s] Deallocating buffers... [0.021s] Loading trace points... [0.043s] Sorting trace points... [1.148s] Computing alignments... [31.652s] Deallocating buffers... [0.017s] Loading trace points... [0.113s] Sorting trace points... [1.109s] Computing alignments... [31.452s] Deallocating buffers... [0.017s] Loading trace points... [0.813s] Sorting trace points... [1.193s] Computing alignments... [32.041s] Deallocating buffers... [0.021s] Loading trace points... [0.002s] Sorting trace points... [0.962s] Computing alignments... [33.019s] Deallocating buffers... [0.025s] Loading trace points... [0.064s] Sorting trace points... [1.142s] Computing alignments... [32.262s] Deallocating buffers... [0.024s] Loading trace points... [0.099s] Sorting trace points... [1.02s] Computing alignments... [30.569s] Deallocating buffers... [0.021s] Loading trace points... [0.047s] Sorting trace points... [0.98s] Computing alignments... [31.002s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.117s] Computing alignments... [30.089s] Deallocating buffers... [0.021s] Loading trace points... [0s] [532.787s] Deallocating reference... [0.07s] Loading reference sequences... [0.093s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2346s] [2346s] Deallocating queries... [0.069s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.9s] [3.806s] Closing the database... [0s] Cleaning up... [0s] Total time = 30154.6s Reported 2310908381 pairwise alignments, 2310908381 HSPs. 4301510 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-04.trimmed.R2.fastq.gz complete: CH03-04.trimmed.R2.blastx.meganized.daa Now MEGANizing CH03-04.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH03-04.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (333.6s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.9s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,019.5s) Total reads: 4,301,510 With hits: 4,301,510 Alignments: 1,883,509,035 Assig. Taxonomy: 2,307,418 Assig. SEED: 102,369 Assig. EGGNOG: 23,721 Assig. GTDB: 189,129 Assig. EC: 355,900 Assig. INTERPRO2GO: 1,023,957 MinSupport set to: 2150 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 5,193 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.7s) Min-supp. changes: 3,797 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5.5s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 167 Class. SEED: 485 Class. EGGNOG: 1,614 Class. GTDB: 44 Class. EC: 2,332 Class. INTERPRO2GO: 8,617 Total time: 4,379s Peak memory: 31.8 of 195.3G MEGANization of CH03-04.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-15.trimmed.R1.fastq.gz... 3ecf0ff73c12ee1abef9c2f1e63350cc /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-15.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-15.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.319s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.783s] Opening the output file... [0s] Loading query sequences... [79.278s] Masking queries... [20.807s] Algorithm: Double-indexed Building query histograms... [18.19s] Loading reference sequences... [28.928s] Masking reference... [32.093s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.453s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.542s] Building query seed array... [1.899s] Computing hash join... [5.602s] Masking low complexity seeds... [0.181s] Searching alignments... [367.196s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.712s] Building query seed array... [2.387s] Computing hash join... [4.851s] Masking low complexity seeds... [0.171s] Searching alignments... [149.41s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.7s] Building query seed array... [2.365s] Computing hash join... [4.903s] Masking low complexity seeds... [0.178s] Searching alignments... [119.243s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.2s] Building query seed array... [1.957s] Computing hash join... [5.124s] Masking low complexity seeds... [0.183s] Searching alignments... [117.082s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.867s] Building query seed array... [1.822s] Computing hash join... [4.62s] Masking low complexity seeds... [0.167s] Searching alignments... [165.69s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.554s] Building query seed array... [1.927s] Computing hash join... [4.704s] Masking low complexity seeds... [0.167s] Searching alignments... [130.357s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.816s] Building query seed array... [2.192s] Computing hash join... [4.839s] Masking low complexity seeds... [0.187s] Searching alignments... [98.323s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.858s] Building query seed array... [1.823s] Computing hash join... [5.253s] Masking low complexity seeds... [0.181s] Searching alignments... [101.752s] Deallocating memory... [0s] Deallocating buffers... [0.569s] Clearing query masking... [1.281s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.957s] Sorting trace points... [1.474s] Computing alignments... [42.597s] Deallocating buffers... [0.026s] Loading trace points... [0.091s] Sorting trace points... [1.462s] Computing alignments... [44.413s] Deallocating buffers... [0.02s] Loading trace points... [0.077s] Sorting trace points... [1.406s] Computing alignments... [44.964s] Deallocating buffers... [0.027s] Loading trace points... [0.063s] Sorting trace points... [1.525s] Computing alignments... [45.93s] Deallocating buffers... [0.028s] Loading trace points... [0.084s] Sorting trace points... [1.438s] Computing alignments... [45.793s] Deallocating buffers... [0.035s] Loading trace points... [0.065s] Sorting trace points... [1.48s] Computing alignments... [43.374s] Deallocating buffers... [0.043s] Loading trace points... [0.001s] Sorting trace points... [1.554s] Computing alignments... [44.105s] Deallocating buffers... [0.026s] Loading trace points... [0.072s] Sorting trace points... [1.48s] Computing alignments... [44.918s] Deallocating buffers... [0.027s] Loading trace points... [0.061s] Sorting trace points... [1.459s] Computing alignments... [44.052s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.458s] Computing alignments... [45.872s] Deallocating buffers... [0.031s] Loading trace points... [0.068s] Sorting trace points... [1.542s] Computing alignments... [45.821s] Deallocating buffers... [0.019s] Loading trace points... [0.066s] Sorting trace points... [1.492s] Computing alignments... [45.964s] Deallocating buffers... [0.032s] Loading trace points... [0.051s] Sorting trace points... [1.466s] Computing alignments... [44.115s] Deallocating buffers... [0.029s] Loading trace points... [0.105s] Sorting trace points... [1.478s] Computing alignments... [44.655s] Deallocating buffers... [0.031s] Loading trace points... [0.075s] Sorting trace points... [1.455s] Computing alignments... [45.126s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.502s] Computing alignments... [45.317s] Deallocating buffers... [0.058s] Loading trace points... [0s] [750.197s] Deallocating reference... [0.083s] Loading reference sequences... [29.18s] Masking reference... [30.954s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.173s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.998s] Building query seed array... [1.862s] Computing hash join... [5.409s] Masking low complexity seeds... [0.186s] Searching alignments... [357.811s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.948s] Building query seed array... [2.449s] Computing hash join... [5.384s] Masking low complexity seeds... [0.2s] Searching alignments... [150.17s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.089s] Building query seed array... [2.382s] Computing hash join... [5.331s] Masking low complexity seeds... [0.209s] Searching alignments... [117.825s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.161s] Building query seed array... [1.909s] Computing hash join... [5.15s] Masking low complexity seeds... [0.197s] Searching alignments... [113.729s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.141s] Building query seed array... [1.756s] Computing hash join... [5.213s] Masking low complexity seeds... [0.177s] Searching alignments... [158.117s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.9s] Building query seed array... [2.059s] Computing hash join... [4.75s] Masking low complexity seeds... [0.191s] Searching alignments... [130.183s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.701s] Building query seed array... [2.053s] Computing hash join... [4.718s] Masking low complexity seeds... [0.179s] Searching alignments... [96.955s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.581s] Building query seed array... [1.862s] Computing hash join... [5.086s] Masking low complexity seeds... [0.172s] Searching alignments... [99.558s] Deallocating memory... [0s] Deallocating buffers... [0.584s] Clearing query masking... [1.267s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.918s] Sorting trace points... [1.468s] Computing alignments... [44.369s] Deallocating buffers... [0.041s] Loading trace points... [0.062s] Sorting trace points... [1.131s] Computing alignments... [45.824s] Deallocating buffers... [0.042s] Loading trace points... [0.058s] Sorting trace points... [1.314s] Computing alignments... [46.723s] Deallocating buffers... [0.041s] Loading trace points... [0.093s] Sorting trace points... [1.371s] Computing alignments... [46.893s] Deallocating buffers... [0.05s] Loading trace points... [0.042s] Sorting trace points... [1.137s] Computing alignments... [48.395s] Deallocating buffers... [0.041s] Loading trace points... [0.096s] Sorting trace points... [1.312s] Computing alignments... [44.248s] Deallocating buffers... [0.047s] Loading trace points... [0.083s] Sorting trace points... [1.492s] Computing alignments... [45.413s] Deallocating buffers... [0.045s] Loading trace points... [0.062s] Sorting trace points... [1.116s] Computing alignments... [45.932s] Deallocating buffers... [0.041s] Loading trace points... [0.051s] Sorting trace points... [1.458s] Computing alignments... [45.458s] Deallocating buffers... [0.041s] Loading trace points... [0.053s] Sorting trace points... [1.585s] Computing alignments... [47.448s] Deallocating buffers... [0.042s] Loading trace points... [0.047s] Sorting trace points... [1.48s] Computing alignments... [48.022s] Deallocating buffers... [0.041s] Loading trace points... [0.08s] Sorting trace points... [1.114s] Computing alignments... [47.872s] Deallocating buffers... [0.04s] Loading trace points... [0.065s] Sorting trace points... [1.427s] Computing alignments... [45.529s] Deallocating buffers... [0.039s] Loading trace points... [0.052s] Sorting trace points... [1.248s] Computing alignments... [46.682s] Deallocating buffers... [0.041s] Loading trace points... [0.048s] Sorting trace points... [1.157s] Computing alignments... [45.692s] Deallocating buffers... [0.045s] Loading trace points... [0s] Sorting trace points... [1.322s] Computing alignments... [46.363s] Deallocating buffers... [0.041s] Loading trace points... [0s] [771.604s] Deallocating reference... [0.058s] Loading reference sequences... [31.718s] Masking reference... [31.241s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.951s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.288s] Building query seed array... [1.868s] Computing hash join... [5.291s] Masking low complexity seeds... [0.183s] Searching alignments... [364.483s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.287s] Building query seed array... [2.375s] Computing hash join... [5.227s] Masking low complexity seeds... [0.21s] Searching alignments... [151.371s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.268s] Building query seed array... [2.431s] Computing hash join... [4.912s] Masking low complexity seeds... [0.181s] Searching alignments... [118.094s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.457s] Building query seed array... [1.961s] Computing hash join... [4.943s] Masking low complexity seeds... [0.203s] Searching alignments... [113.112s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.045s] Building query seed array... [1.729s] Computing hash join... [5.031s] Masking low complexity seeds... [0.192s] Searching alignments... [164.416s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.573s] Building query seed array... [2.026s] Computing hash join... [4.781s] Masking low complexity seeds... [0.173s] Searching alignments... [131.001s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.345s] Building query seed array... [2.189s] Computing hash join... [4.757s] Masking low complexity seeds... [0.17s] Searching alignments... [98.187s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.942s] Building query seed array... [1.777s] Computing hash join... [4.656s] Masking low complexity seeds... [0.171s] Searching alignments... [98.128s] Deallocating memory... [0s] Deallocating buffers... [0.588s] Clearing query masking... [1.233s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.813s] Sorting trace points... [1.483s] Computing alignments... [43.996s] Deallocating buffers... [0.046s] Loading trace points... [0.001s] Sorting trace points... [1.351s] Computing alignments... [45.898s] Deallocating buffers... [0.06s] Loading trace points... [0.065s] Sorting trace points... [1.417s] Computing alignments... [47.085s] Deallocating buffers... [0.061s] Loading trace points... [0.07s] Sorting trace points... [1.477s] Computing alignments... [46.701s] Deallocating buffers... [0.038s] Loading trace points... [0.066s] Sorting trace points... [1.427s] Computing alignments... [48.167s] Deallocating buffers... [0.045s] Loading trace points... [0.053s] Sorting trace points... [1.106s] Computing alignments... [44.596s] Deallocating buffers... [0.049s] Loading trace points... [0.057s] Sorting trace points... [1.168s] Computing alignments... [45.186s] Deallocating buffers... [0.05s] Loading trace points... [0.056s] Sorting trace points... [1.496s] Computing alignments... [46.103s] Deallocating buffers... [0.036s] Loading trace points... [0.061s] Sorting trace points... [1.497s] Computing alignments... [45.433s] Deallocating buffers... [0.045s] Loading trace points... [0.042s] Sorting trace points... [1.477s] Computing alignments... [47.356s] Deallocating buffers... [0.059s] Loading trace points... [0.081s] Sorting trace points... [1.518s] Computing alignments... [48.09s] Deallocating buffers... [0.058s] Loading trace points... [0.051s] Sorting trace points... [1.605s] Computing alignments... [48.106s] Deallocating buffers... [0.053s] Loading trace points... [0.056s] Sorting trace points... [1.069s] Computing alignments... [44.955s] Deallocating buffers... [0.039s] Loading trace points... [0.058s] Sorting trace points... [1.47s] Computing alignments... [46.468s] Deallocating buffers... [0.051s] Loading trace points... [0.116s] Sorting trace points... [1.456s] Computing alignments... [45.638s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [1.246s] Computing alignments... [46.81s] Deallocating buffers... [0.037s] Loading trace points... [0s] [772.38s] Deallocating reference... [0.061s] Loading reference sequences... [29.124s] Masking reference... [30.874s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.774s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.417s] Building query seed array... [1.892s] Computing hash join... [5.707s] Masking low complexity seeds... [0.188s] Searching alignments... [365.937s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.631s] Building query seed array... [2.444s] Computing hash join... [5.482s] Masking low complexity seeds... [0.184s] Searching alignments... [152.902s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.576s] Building query seed array... [2.347s] Computing hash join... [5.279s] Masking low complexity seeds... [0.207s] Searching alignments... [119.267s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.484s] Building query seed array... [1.929s] Computing hash join... [5.597s] Masking low complexity seeds... [0.228s] Searching alignments... [116.616s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.209s] Building query seed array... [1.814s] Computing hash join... [4.759s] Masking low complexity seeds... [0.17s] Searching alignments... [163.697s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.99s] Building query seed array... [2.131s] Computing hash join... [5.086s] Masking low complexity seeds... [0.168s] Searching alignments... [130.976s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.105s] Building query seed array... [2.163s] Computing hash join... [5.641s] Masking low complexity seeds... [0.177s] Searching alignments... [97.224s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.14s] Building query seed array... [1.828s] Computing hash join... [4.8s] Masking low complexity seeds... [0.176s] Searching alignments... [100.032s] Deallocating memory... [0s] Deallocating buffers... [0.858s] Clearing query masking... [1.271s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.042s] Sorting trace points... [1.303s] Computing alignments... [43.395s] Deallocating buffers... [0.039s] Loading trace points... [0.072s] Sorting trace points... [1.462s] Computing alignments... [45.534s] Deallocating buffers... [0.037s] Loading trace points... [0.077s] Sorting trace points... [1.293s] Computing alignments... [45.809s] Deallocating buffers... [0.036s] Loading trace points... [0.062s] Sorting trace points... [1.408s] Computing alignments... [46.266s] Deallocating buffers... [0.036s] Loading trace points... [0.059s] Sorting trace points... [1.487s] Computing alignments... [47.284s] Deallocating buffers... [0.035s] Loading trace points... [0.071s] Sorting trace points... [1.469s] Computing alignments... [43.806s] Deallocating buffers... [0.034s] Loading trace points... [0.091s] Sorting trace points... [1.512s] Computing alignments... [44.582s] Deallocating buffers... [0.036s] Loading trace points... [0.08s] Sorting trace points... [1.53s] Computing alignments... [45.278s] Deallocating buffers... [0.018s] Loading trace points... [0.077s] Sorting trace points... [1.082s] Computing alignments... [44.735s] Deallocating buffers... [0.037s] Loading trace points... [0.1s] Sorting trace points... [1.331s] Computing alignments... [46.282s] Deallocating buffers... [0.05s] Loading trace points... [0.061s] Sorting trace points... [1.578s] Computing alignments... [47.155s] Deallocating buffers... [0.032s] Loading trace points... [0.087s] Sorting trace points... [1.284s] Computing alignments... [46.635s] Deallocating buffers... [0.037s] Loading trace points... [0.064s] Sorting trace points... [1.453s] Computing alignments... [44.566s] Deallocating buffers... [0.031s] Loading trace points... [0.078s] Sorting trace points... [1.092s] Computing alignments... [45.632s] Deallocating buffers... [0.034s] Loading trace points... [0.165s] Sorting trace points... [1.148s] Computing alignments... [45.248s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [1.535s] Computing alignments... [45.932s] Deallocating buffers... [0.031s] Loading trace points... [0s] [760.013s] Deallocating reference... [0.078s] Loading reference sequences... [245.169s] Masking reference... [30.872s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.529s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.369s] Building query seed array... [1.885s] Computing hash join... [5.452s] Masking low complexity seeds... [0.192s] Searching alignments... [363.205s] Deallocating memory... [0.003s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.812s] Building query seed array... [2.522s] Computing hash join... [5.185s] Masking low complexity seeds... [0.176s] Searching alignments... [151.749s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.445s] Building query seed array... [2.411s] Computing hash join... [4.967s] Masking low complexity seeds... [0.18s] Searching alignments... [118.725s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.004s] Building query seed array... [1.982s] Computing hash join... [4.806s] Masking low complexity seeds... [0.188s] Searching alignments... [113.029s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.955s] Building query seed array... [1.776s] Computing hash join... [4.86s] Masking low complexity seeds... [0.167s] Searching alignments... [162.633s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.876s] Building query seed array... [2.056s] Computing hash join... [5.182s] Masking low complexity seeds... [0.181s] Searching alignments... [132.403s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.556s] Building query seed array... [2.195s] Computing hash join... [5.444s] Masking low complexity seeds... [0.204s] Searching alignments... [98.835s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.213s] Building query seed array... [1.803s] Computing hash join... [5.07s] Masking low complexity seeds... [0.179s] Searching alignments... [98.143s] Deallocating memory... [0s] Deallocating buffers... [0.867s] Clearing query masking... [1.271s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.186s] Sorting trace points... [1.435s] Computing alignments... [45.913s] Deallocating buffers... [0.071s] Loading trace points... [0.071s] Sorting trace points... [1.38s] Computing alignments... [48.116s] Deallocating buffers... [0.058s] Loading trace points... [0.076s] Sorting trace points... [1.112s] Computing alignments... [48.738s] Deallocating buffers... [0.053s] Loading trace points... [0.056s] Sorting trace points... [1.188s] Computing alignments... [48.568s] Deallocating buffers... [0.057s] Loading trace points... [0.063s] Sorting trace points... [1.519s] Computing alignments... [50.928s] Deallocating buffers... [0.064s] Loading trace points... [0.068s] Sorting trace points... [1.068s] Computing alignments... [46.856s] Deallocating buffers... [0.061s] Loading trace points... [0.836s] Sorting trace points... [1.211s] Computing alignments... [46.898s] Deallocating buffers... [0.057s] Loading trace points... [0.065s] Sorting trace points... [1.465s] Computing alignments... [48.34s] Deallocating buffers... [0.055s] Loading trace points... [0.074s] Sorting trace points... [1.27s] Computing alignments... [47.024s] Deallocating buffers... [0.058s] Loading trace points... [0.076s] Sorting trace points... [1.531s] Computing alignments... [49.188s] Deallocating buffers... [0.058s] Loading trace points... [0.051s] Sorting trace points... [1.205s] Computing alignments... [50.225s] Deallocating buffers... [0.06s] Loading trace points... [0.105s] Sorting trace points... [1.254s] Computing alignments... [50.032s] Deallocating buffers... [0.051s] Loading trace points... [0.057s] Sorting trace points... [1.111s] Computing alignments... [47.239s] Deallocating buffers... [0.051s] Loading trace points... [0.079s] Sorting trace points... [1.242s] Computing alignments... [48.39s] Deallocating buffers... [0.056s] Loading trace points... [0.082s] Sorting trace points... [1.445s] Computing alignments... [47.84s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [1.331s] Computing alignments... [48.671s] Deallocating buffers... [0.054s] Loading trace points... [0s] [804.704s] Deallocating reference... [0.067s] Loading reference sequences... [252.52s] Masking reference... [31.059s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.946s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.226s] Building query seed array... [1.835s] Computing hash join... [5.624s] Masking low complexity seeds... [0.188s] Searching alignments... [361.716s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.638s] Building query seed array... [2.26s] Computing hash join... [5.727s] Masking low complexity seeds... [0.212s] Searching alignments... [150.816s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.884s] Building query seed array... [2.407s] Computing hash join... [5.657s] Masking low complexity seeds... [0.234s] Searching alignments... [116.556s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.515s] Building query seed array... [1.886s] Computing hash join... [5.074s] Masking low complexity seeds... [0.195s] Searching alignments... [117.106s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.17s] Building query seed array... [1.693s] Computing hash join... [5.263s] Masking low complexity seeds... [0.185s] Searching alignments... [160.871s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.271s] Building query seed array... [2.062s] Computing hash join... [4.869s] Masking low complexity seeds... [0.169s] Searching alignments... [128.068s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.176s] Building query seed array... [2.114s] Computing hash join... [5.275s] Masking low complexity seeds... [0.172s] Searching alignments... [97.395s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.386s] Building query seed array... [1.846s] Computing hash join... [4.772s] Masking low complexity seeds... [0.169s] Searching alignments... [98.647s] Deallocating memory... [0s] Deallocating buffers... [0.919s] Clearing query masking... [1.286s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.753s] Sorting trace points... [1.422s] Computing alignments... [44.243s] Deallocating buffers... [0.026s] Loading trace points... [0.054s] Sorting trace points... [1.205s] Computing alignments... [45.568s] Deallocating buffers... [0.037s] Loading trace points... [0.056s] Sorting trace points... [1.498s] Computing alignments... [47.551s] Deallocating buffers... [0.037s] Loading trace points... [0.056s] Sorting trace points... [1.141s] Computing alignments... [47.507s] Deallocating buffers... [0.02s] Loading trace points... [0.044s] Sorting trace points... [1.452s] Computing alignments... [48.254s] Deallocating buffers... [0.03s] Loading trace points... [0.107s] Sorting trace points... [1.177s] Computing alignments... [45.744s] Deallocating buffers... [0.033s] Loading trace points... [0.079s] Sorting trace points... [1.447s] Computing alignments... [45.783s] Deallocating buffers... [0.03s] Loading trace points... [0.064s] Sorting trace points... [1.352s] Computing alignments... [46.536s] Deallocating buffers... [0.028s] Loading trace points... [0.046s] Sorting trace points... [1.109s] Computing alignments... [45.6s] Deallocating buffers... [0.021s] Loading trace points... [0.831s] Sorting trace points... [1.472s] Computing alignments... [48.255s] Deallocating buffers... [0.037s] Loading trace points... [0.076s] Sorting trace points... [1.525s] Computing alignments... [49.033s] Deallocating buffers... [0.035s] Loading trace points... [0.063s] Sorting trace points... [1.549s] Computing alignments... [48.461s] Deallocating buffers... [0.028s] Loading trace points... [0.083s] Sorting trace points... [1.414s] Computing alignments... [45.703s] Deallocating buffers... [0.031s] Loading trace points... [0.097s] Sorting trace points... [1.127s] Computing alignments... [46.902s] Deallocating buffers... [0.03s] Loading trace points... [0.059s] Sorting trace points... [1.27s] Computing alignments... [46.579s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.481s] Computing alignments... [47.479s] Deallocating buffers... [0.028s] Loading trace points... [0s] [780.942s] Deallocating reference... [0.075s] Loading reference sequences... [30.346s] Masking reference... [32.146s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.006s] Building reference histograms... [32.883s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.134s] Building query seed array... [1.857s] Computing hash join... [5.46s] Masking low complexity seeds... [0.186s] Searching alignments... [358.458s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.075s] Building query seed array... [2.449s] Computing hash join... [5.51s] Masking low complexity seeds... [0.2s] Searching alignments... [152.451s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.322s] Building query seed array... [2.542s] Computing hash join... [4.902s] Masking low complexity seeds... [0.178s] Searching alignments... [117.476s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.454s] Building query seed array... [1.866s] Computing hash join... [4.928s] Masking low complexity seeds... [0.197s] Searching alignments... [113.461s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.556s] Building query seed array... [1.855s] Computing hash join... [5.234s] Masking low complexity seeds... [0.183s] Searching alignments... [167.482s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.405s] Building query seed array... [2.026s] Computing hash join... [4.711s] Masking low complexity seeds... [0.16s] Searching alignments... [128.488s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.47s] Building query seed array... [2.091s] Computing hash join... [4.786s] Masking low complexity seeds... [0.178s] Searching alignments... [99.323s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.052s] Building query seed array... [1.776s] Computing hash join... [5.335s] Masking low complexity seeds... [0.183s] Searching alignments... [99.202s] Deallocating memory... [0s] Deallocating buffers... [0.807s] Clearing query masking... [1.313s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.185s] Sorting trace points... [1.302s] Computing alignments... [45.025s] Deallocating buffers... [0.037s] Loading trace points... [0.07s] Sorting trace points... [1.101s] Computing alignments... [46.352s] Deallocating buffers... [0.027s] Loading trace points... [0.094s] Sorting trace points... [1.28s] Computing alignments... [47.45s] Deallocating buffers... [0.04s] Loading trace points... [0.74s] Sorting trace points... [1.179s] Computing alignments... [47.817s] Deallocating buffers... [0.021s] Loading trace points... [0.063s] Sorting trace points... [1.453s] Computing alignments... [48.717s] Deallocating buffers... [0.023s] Loading trace points... [0.057s] Sorting trace points... [1.174s] Computing alignments... [45.999s] Deallocating buffers... [0.027s] Loading trace points... [0.077s] Sorting trace points... [1.493s] Computing alignments... [45.838s] Deallocating buffers... [0.03s] Loading trace points... [0.053s] Sorting trace points... [1.491s] Computing alignments... [47.364s] Deallocating buffers... [0.032s] Loading trace points... [0.048s] Sorting trace points... [1.434s] Computing alignments... [45.86s] Deallocating buffers... [0.023s] Loading trace points... [0.049s] Sorting trace points... [1.455s] Computing alignments... [48.152s] Deallocating buffers... [0.042s] Loading trace points... [0.107s] Sorting trace points... [1.2s] Computing alignments... [49.085s] Deallocating buffers... [0.038s] Loading trace points... [0.067s] Sorting trace points... [1.309s] Computing alignments... [48.79s] Deallocating buffers... [0.031s] Loading trace points... [0.075s] Sorting trace points... [1.234s] Computing alignments... [46.004s] Deallocating buffers... [0.026s] Loading trace points... [0.049s] Sorting trace points... [1.24s] Computing alignments... [46.815s] Deallocating buffers... [0.028s] Loading trace points... [0.051s] Sorting trace points... [1.429s] Computing alignments... [46.966s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.354s] Computing alignments... [47.899s] Deallocating buffers... [0.028s] Loading trace points... [0s] [785.621s] Deallocating reference... [0.093s] Loading reference sequences... [33.062s] Masking reference... [30.877s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.342s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.43s] Building query seed array... [1.927s] Computing hash join... [5.46s] Masking low complexity seeds... [0.181s] Searching alignments... [361.455s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.312s] Building query seed array... [2.433s] Computing hash join... [5.408s] Masking low complexity seeds... [0.183s] Searching alignments... [150.253s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.493s] Building query seed array... [2.35s] Computing hash join... [5.044s] Masking low complexity seeds... [0.188s] Searching alignments... [118.351s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.34s] Building query seed array... [1.966s] Computing hash join... [4.994s] Masking low complexity seeds... [0.186s] Searching alignments... [113.369s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.317s] Building query seed array... [1.78s] Computing hash join... [4.627s] Masking low complexity seeds... [0.176s] Searching alignments... [160.945s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.681s] Building query seed array... [2.005s] Computing hash join... [5.536s] Masking low complexity seeds... [0.18s] Searching alignments... [127.436s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.707s] Building query seed array... [2.204s] Computing hash join... [4.866s] Masking low complexity seeds... [0.187s] Searching alignments... [97.148s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.179s] Building query seed array... [1.85s] Computing hash join... [4.757s] Masking low complexity seeds... [0.177s] Searching alignments... [100.887s] Deallocating memory... [0s] Deallocating buffers... [1.091s] Clearing query masking... [1.444s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.767s] Sorting trace points... [1.438s] Computing alignments... [42.873s] Deallocating buffers... [0.034s] Loading trace points... [0.058s] Sorting trace points... [1.451s] Computing alignments... [44.576s] Deallocating buffers... [0.021s] Loading trace points... [0.063s] Sorting trace points... [1.329s] Computing alignments... [45.487s] Deallocating buffers... [0.043s] Loading trace points... [0.062s] Sorting trace points... [1.569s] Computing alignments... [46.051s] Deallocating buffers... [0.031s] Loading trace points... [0.001s] Sorting trace points... [1.438s] Computing alignments... [46.549s] Deallocating buffers... [0.029s] Loading trace points... [0.094s] Sorting trace points... [1.463s] Computing alignments... [43.605s] Deallocating buffers... [0.027s] Loading trace points... [0.09s] Sorting trace points... [1.151s] Computing alignments... [43.874s] Deallocating buffers... [0.027s] Loading trace points... [0.05s] Sorting trace points... [1.478s] Computing alignments... [44.993s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.442s] Computing alignments... [44.346s] Deallocating buffers... [0.029s] Loading trace points... [0.057s] Sorting trace points... [1.479s] Computing alignments... [45.842s] Deallocating buffers... [0.033s] Loading trace points... [0.002s] Sorting trace points... [1.113s] Computing alignments... [46.401s] Deallocating buffers... [0.029s] Loading trace points... [0.06s] Sorting trace points... [1.473s] Computing alignments... [46.468s] Deallocating buffers... [0.029s] Loading trace points... [0.089s] Sorting trace points... [1.451s] Computing alignments... [44.258s] Deallocating buffers... [0.021s] Loading trace points... [0.05s] Sorting trace points... [1.087s] Computing alignments... [44.893s] Deallocating buffers... [0.035s] Loading trace points... [0.083s] Sorting trace points... [1.405s] Computing alignments... [45.066s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.473s] Computing alignments... [45.777s] Deallocating buffers... [0.027s] Loading trace points... [0s] [753.599s] Deallocating reference... [0.072s] Loading reference sequences... [30.345s] Masking reference... [32.093s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.625s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.363s] Building query seed array... [1.874s] Computing hash join... [5.678s] Masking low complexity seeds... [0.194s] Searching alignments... [363.979s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.944s] Building query seed array... [2.456s] Computing hash join... [5.17s] Masking low complexity seeds... [0.185s] Searching alignments... [151.387s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.521s] Building query seed array... [2.369s] Computing hash join... [5.797s] Masking low complexity seeds... [0.201s] Searching alignments... [118.503s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.576s] Building query seed array... [1.992s] Computing hash join... [4.865s] Masking low complexity seeds... [0.18s] Searching alignments... [118.374s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.512s] Building query seed array... [1.835s] Computing hash join... [4.889s] Masking low complexity seeds... [0.174s] Searching alignments... [169.503s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.788s] Building query seed array... [2.02s] Computing hash join... [5.269s] Masking low complexity seeds... [0.169s] Searching alignments... [129.973s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.772s] Building query seed array... [2.183s] Computing hash join... [4.767s] Masking low complexity seeds... [0.162s] Searching alignments... [99.476s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.064s] Building query seed array... [1.865s] Computing hash join... [4.852s] Masking low complexity seeds... [0.178s] Searching alignments... [102.294s] Deallocating memory... [0s] Deallocating buffers... [1.077s] Clearing query masking... [1.456s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.839s] Sorting trace points... [1.504s] Computing alignments... [43.845s] Deallocating buffers... [0.067s] Loading trace points... [0.056s] Sorting trace points... [1.226s] Computing alignments... [45.524s] Deallocating buffers... [0.062s] Loading trace points... [0.1s] Sorting trace points... [1.17s] Computing alignments... [46.899s] Deallocating buffers... [0.064s] Loading trace points... [0.069s] Sorting trace points... [1.485s] Computing alignments... [46.056s] Deallocating buffers... [0.047s] Loading trace points... [0.057s] Sorting trace points... [1.475s] Computing alignments... [47.708s] Deallocating buffers... [0.061s] Loading trace points... [0.767s] Sorting trace points... [1.529s] Computing alignments... [43.831s] Deallocating buffers... [0.054s] Loading trace points... [0.12s] Sorting trace points... [1.476s] Computing alignments... [44.903s] Deallocating buffers... [0.047s] Loading trace points... [0.068s] Sorting trace points... [1.109s] Computing alignments... [45.338s] Deallocating buffers... [0.055s] Loading trace points... [0.045s] Sorting trace points... [1.414s] Computing alignments... [45.464s] Deallocating buffers... [0.06s] Loading trace points... [0.06s] Sorting trace points... [1.13s] Computing alignments... [46.689s] Deallocating buffers... [0.074s] Loading trace points... [0.053s] Sorting trace points... [1.523s] Computing alignments... [47.845s] Deallocating buffers... [0.073s] Loading trace points... [0.062s] Sorting trace points... [1.413s] Computing alignments... [46.969s] Deallocating buffers... [0.051s] Loading trace points... [0.088s] Sorting trace points... [1.425s] Computing alignments... [44.729s] Deallocating buffers... [0.051s] Loading trace points... [0.065s] Sorting trace points... [1.466s] Computing alignments... [45.971s] Deallocating buffers... [0.059s] Loading trace points... [0.071s] Sorting trace points... [1.286s] Computing alignments... [46.071s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [1.371s] Computing alignments... [45.83s] Deallocating buffers... [0.038s] Loading trace points... [0s] [766.274s] Deallocating reference... [0.062s] Loading reference sequences... [35.286s] Masking reference... [30.991s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.76s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.83s] Building query seed array... [1.848s] Computing hash join... [5.877s] Masking low complexity seeds... [0.186s] Searching alignments... [358.917s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.867s] Building query seed array... [2.498s] Computing hash join... [5.886s] Masking low complexity seeds... [0.184s] Searching alignments... [152.375s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.161s] Building query seed array... [2.3s] Computing hash join... [5.005s] Masking low complexity seeds... [0.194s] Searching alignments... [117.77s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.313s] Building query seed array... [1.9s] Computing hash join... [4.979s] Masking low complexity seeds... [0.188s] Searching alignments... [111.201s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.362s] Building query seed array... [1.757s] Computing hash join... [4.695s] Masking low complexity seeds... [0.168s] Searching alignments... [160.155s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.6s] Building query seed array... [2.038s] Computing hash join... [4.649s] Masking low complexity seeds... [0.175s] Searching alignments... [131.707s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.539s] Building query seed array... [2.226s] Computing hash join... [4.876s] Masking low complexity seeds... [0.182s] Searching alignments... [98.272s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.419s] Building query seed array... [1.849s] Computing hash join... [5.2s] Masking low complexity seeds... [0.177s] Searching alignments... [99.365s] Deallocating memory... [0s] Deallocating buffers... [1.247s] Clearing query masking... [1.237s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.98s] Sorting trace points... [1.486s] Computing alignments... [40.142s] Deallocating buffers... [0.026s] Loading trace points... [0.053s] Sorting trace points... [1.454s] Computing alignments... [41.444s] Deallocating buffers... [0.017s] Loading trace points... [0.048s] Sorting trace points... [1.194s] Computing alignments... [42.094s] Deallocating buffers... [0.035s] Loading trace points... [0.059s] Sorting trace points... [1.439s] Computing alignments... [42.8s] Deallocating buffers... [0.023s] Loading trace points... [0.046s] Sorting trace points... [1.421s] Computing alignments... [42.948s] Deallocating buffers... [0.03s] Loading trace points... [0.081s] Sorting trace points... [1.247s] Computing alignments... [40.741s] Deallocating buffers... [0.027s] Loading trace points... [0.069s] Sorting trace points... [1.439s] Computing alignments... [40.852s] Deallocating buffers... [0.027s] Loading trace points... [0.079s] Sorting trace points... [1.469s] Computing alignments... [41.971s] Deallocating buffers... [0.021s] Loading trace points... [0.043s] Sorting trace points... [1.477s] Computing alignments... [40.905s] Deallocating buffers... [0.03s] Loading trace points... [1.019s] Sorting trace points... [1.536s] Computing alignments... [42.484s] Deallocating buffers... [0.037s] Loading trace points... [0.045s] Sorting trace points... [1.507s] Computing alignments... [42.968s] Deallocating buffers... [0.026s] Loading trace points... [0.076s] Sorting trace points... [1.538s] Computing alignments... [43.566s] Deallocating buffers... [0.032s] Loading trace points... [0.081s] Sorting trace points... [1.166s] Computing alignments... [41.159s] Deallocating buffers... [0.019s] Loading trace points... [0.062s] Sorting trace points... [1.186s] Computing alignments... [41.716s] Deallocating buffers... [0.021s] Loading trace points... [0.052s] Sorting trace points... [1.085s] Computing alignments... [42.302s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.531s] Computing alignments... [42.353s] Deallocating buffers... [0.018s] Loading trace points... [0s] [702.918s] Deallocating reference... [0.066s] Loading reference sequences... [30.888s] Masking reference... [30.921s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.225s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.537s] Building query seed array... [1.903s] Computing hash join... [5.548s] Masking low complexity seeds... [0.187s] Searching alignments... [364.132s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.225s] Building query seed array... [2.314s] Computing hash join... [5.638s] Masking low complexity seeds... [0.2s] Searching alignments... [152.257s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.603s] Building query seed array... [2.438s] Computing hash join... [4.924s] Masking low complexity seeds... [0.196s] Searching alignments... [117.076s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.306s] Building query seed array... [1.958s] Computing hash join... [5.539s] Masking low complexity seeds... [0.179s] Searching alignments... [114.365s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.932s] Building query seed array... [1.852s] Computing hash join... [4.926s] Masking low complexity seeds... [0.212s] Searching alignments... [163.257s] Deallocating memory... [0.002s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.597s] Building query seed array... [2.04s] Computing hash join... [5.493s] Masking low complexity seeds... [0.194s] Searching alignments... [128.32s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.681s] Building query seed array... [2.146s] Computing hash join... [5.538s] Masking low complexity seeds... [0.194s] Searching alignments... [98.43s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.96s] Building query seed array... [1.893s] Computing hash join... [5.377s] Masking low complexity seeds... [0.185s] Searching alignments... [99.959s] Deallocating memory... [0s] Deallocating buffers... [0.959s] Clearing query masking... [1.313s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.902s] Sorting trace points... [1.249s] Computing alignments... [47.275s] Deallocating buffers... [0.079s] Loading trace points... [0.059s] Sorting trace points... [1.287s] Computing alignments... [48.749s] Deallocating buffers... [0.066s] Loading trace points... [0.081s] Sorting trace points... [1.356s] Computing alignments... [50.091s] Deallocating buffers... [0.052s] Loading trace points... [0.128s] Sorting trace points... [1.536s] Computing alignments... [50.184s] Deallocating buffers... [0.063s] Loading trace points... [0.061s] Sorting trace points... [1.358s] Computing alignments... [51.405s] Deallocating buffers... [0.066s] Loading trace points... [0.088s] Sorting trace points... [1.221s] Computing alignments... [48.125s] Deallocating buffers... [0.07s] Loading trace points... [0.091s] Sorting trace points... [1.472s] Computing alignments... [47.957s] Deallocating buffers... [0.06s] Loading trace points... [0.669s] Sorting trace points... [1.551s] Computing alignments... [49.278s] Deallocating buffers... [0.075s] Loading trace points... [0.046s] Sorting trace points... [1.406s] Computing alignments... [48.24s] Deallocating buffers... [0.064s] Loading trace points... [0.062s] Sorting trace points... [1.476s] Computing alignments... [50.565s] Deallocating buffers... [0.074s] Loading trace points... [0.083s] Sorting trace points... [1.591s] Computing alignments... [51.408s] Deallocating buffers... [0.07s] Loading trace points... [0.08s] Sorting trace points... [1.566s] Computing alignments... [51.51s] Deallocating buffers... [0.062s] Loading trace points... [0.08s] Sorting trace points... [1.455s] Computing alignments... [48.369s] Deallocating buffers... [0.059s] Loading trace points... [0.059s] Sorting trace points... [1.311s] Computing alignments... [49.681s] Deallocating buffers... [0.061s] Loading trace points... [0.443s] Sorting trace points... [1.467s] Computing alignments... [49.461s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [1.545s] Computing alignments... [50.287s] Deallocating buffers... [0.047s] Loading trace points... [0s] [827.533s] Deallocating reference... [0.075s] Loading reference sequences... [28.926s] Masking reference... [31.316s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.115s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.293s] Building query seed array... [1.925s] Computing hash join... [6.042s] Masking low complexity seeds... [0.187s] Searching alignments... [364.88s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.692s] Building query seed array... [2.398s] Computing hash join... [5.485s] Masking low complexity seeds... [0.204s] Searching alignments... [149.195s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.786s] Building query seed array... [2.427s] Computing hash join... [5.026s] Masking low complexity seeds... [0.187s] Searching alignments... [120.203s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.402s] Building query seed array... [1.98s] Computing hash join... [5.041s] Masking low complexity seeds... [0.195s] Searching alignments... [115.485s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.149s] Building query seed array... [1.785s] Computing hash join... [4.808s] Masking low complexity seeds... [0.197s] Searching alignments... [163.421s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.77s] Building query seed array... [2.066s] Computing hash join... [5.369s] Masking low complexity seeds... [0.19s] Searching alignments... [130.018s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.396s] Building query seed array... [2.124s] Computing hash join... [5.061s] Masking low complexity seeds... [0.182s] Searching alignments... [98.193s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.081s] Building query seed array... [1.825s] Computing hash join... [4.726s] Masking low complexity seeds... [0.183s] Searching alignments... [98.99s] Deallocating memory... [0s] Deallocating buffers... [1.457s] Clearing query masking... [1.355s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.964s] Sorting trace points... [1.306s] Computing alignments... [46.521s] Deallocating buffers... [0.088s] Loading trace points... [0.109s] Sorting trace points... [1.432s] Computing alignments... [47.722s] Deallocating buffers... [0.078s] Loading trace points... [0.002s] Sorting trace points... [1.191s] Computing alignments... [48.909s] Deallocating buffers... [0.063s] Loading trace points... [0.057s] Sorting trace points... [1.21s] Computing alignments... [48.744s] Deallocating buffers... [0.053s] Loading trace points... [0.462s] Sorting trace points... [1.201s] Computing alignments... [50.447s] Deallocating buffers... [0.068s] Loading trace points... [0.065s] Sorting trace points... [1.431s] Computing alignments... [46.712s] Deallocating buffers... [0.064s] Loading trace points... [0.057s] Sorting trace points... [1.339s] Computing alignments... [46.982s] Deallocating buffers... [0.059s] Loading trace points... [0.001s] Sorting trace points... [1.113s] Computing alignments... [48.084s] Deallocating buffers... [0.067s] Loading trace points... [0.063s] Sorting trace points... [1.122s] Computing alignments... [46.526s] Deallocating buffers... [0.056s] Loading trace points... [0.079s] Sorting trace points... [1.328s] Computing alignments... [49.761s] Deallocating buffers... [0.068s] Loading trace points... [0.898s] Sorting trace points... [1.575s] Computing alignments... [50.503s] Deallocating buffers... [0.076s] Loading trace points... [0.083s] Sorting trace points... [1.403s] Computing alignments... [50.708s] Deallocating buffers... [0.066s] Loading trace points... [0.059s] Sorting trace points... [1.134s] Computing alignments... [46.688s] Deallocating buffers... [0.067s] Loading trace points... [0.091s] Sorting trace points... [1.466s] Computing alignments... [48.456s] Deallocating buffers... [0.05s] Loading trace points... [0.002s] Sorting trace points... [1.206s] Computing alignments... [47.704s] Deallocating buffers... [0.067s] Loading trace points... [0s] Sorting trace points... [1.393s] Computing alignments... [49.014s] Deallocating buffers... [0.058s] Loading trace points... [0s] [805.55s] Deallocating reference... [0.077s] Loading reference sequences... [29.084s] Masking reference... [30.869s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.802s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.163s] Building query seed array... [1.881s] Computing hash join... [5.754s] Masking low complexity seeds... [0.184s] Searching alignments... [360.764s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.13s] Building query seed array... [2.59s] Computing hash join... [5.548s] Masking low complexity seeds... [0.189s] Searching alignments... [152.375s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.202s] Building query seed array... [2.453s] Computing hash join... [4.975s] Masking low complexity seeds... [0.206s] Searching alignments... [115.379s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.708s] Building query seed array... [1.945s] Computing hash join... [5.412s] Masking low complexity seeds... [0.171s] Searching alignments... [113.162s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.352s] Building query seed array... [1.867s] Computing hash join... [4.841s] Masking low complexity seeds... [0.18s] Searching alignments... [161.469s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.097s] Building query seed array... [2.098s] Computing hash join... [4.85s] Masking low complexity seeds... [0.168s] Searching alignments... [131.242s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.735s] Building query seed array... [2.137s] Computing hash join... [4.917s] Masking low complexity seeds... [0.17s] Searching alignments... [97.697s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.59s] Building query seed array... [1.801s] Computing hash join... [4.885s] Masking low complexity seeds... [0.167s] Searching alignments... [98.096s] Deallocating memory... [0s] Deallocating buffers... [1.308s] Clearing query masking... [1.277s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.879s] Sorting trace points... [1.514s] Computing alignments... [43.68s] Deallocating buffers... [0.028s] Loading trace points... [0.05s] Sorting trace points... [1.041s] Computing alignments... [45.108s] Deallocating buffers... [0.028s] Loading trace points... [0.118s] Sorting trace points... [1.103s] Computing alignments... [46.596s] Deallocating buffers... [0.034s] Loading trace points... [0.054s] Sorting trace points... [1.325s] Computing alignments... [46.405s] Deallocating buffers... [0.029s] Loading trace points... [0.047s] Sorting trace points... [1.471s] Computing alignments... [46.944s] Deallocating buffers... [0.03s] Loading trace points... [0.095s] Sorting trace points... [1.064s] Computing alignments... [44.22s] Deallocating buffers... [0.031s] Loading trace points... [0.083s] Sorting trace points... [1.434s] Computing alignments... [44.353s] Deallocating buffers... [0.018s] Loading trace points... [0.073s] Sorting trace points... [1.215s] Computing alignments... [45.908s] Deallocating buffers... [0.03s] Loading trace points... [0.08s] Sorting trace points... [1.514s] Computing alignments... [44.564s] Deallocating buffers... [0.032s] Loading trace points... [0.06s] Sorting trace points... [1.448s] Computing alignments... [46.533s] Deallocating buffers... [0.027s] Loading trace points... [0.052s] Sorting trace points... [1.537s] Computing alignments... [47.089s] Deallocating buffers... [0.033s] Loading trace points... [0.09s] Sorting trace points... [1.366s] Computing alignments... [47.049s] Deallocating buffers... [0.028s] Loading trace points... [0.073s] Sorting trace points... [1.401s] Computing alignments... [44.901s] Deallocating buffers... [0.018s] Loading trace points... [0.053s] Sorting trace points... [1.456s] Computing alignments... [45.544s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [1.524s] Computing alignments... [45.3s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.134s] Computing alignments... [46.423s] Deallocating buffers... [0.03s] Loading trace points... [0s] [761.687s] Deallocating reference... [0.072s] Loading reference sequences... [23.253s] Masking reference... [25.03s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [26.75s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.241s] Building query seed array... [1.856s] Computing hash join... [4.367s] Masking low complexity seeds... [0.183s] Searching alignments... [292.013s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.234s] Building query seed array... [2.052s] Computing hash join... [4.277s] Masking low complexity seeds... [0.171s] Searching alignments... [122.904s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.601s] Building query seed array... [2.164s] Computing hash join... [4.023s] Masking low complexity seeds... [0.165s] Searching alignments... [93.377s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.43s] Building query seed array... [1.778s] Computing hash join... [3.956s] Masking low complexity seeds... [0.164s] Searching alignments... [92.317s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.257s] Building query seed array... [1.617s] Computing hash join... [3.947s] Masking low complexity seeds... [0.167s] Searching alignments... [131.962s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.072s] Building query seed array... [1.879s] Computing hash join... [3.876s] Masking low complexity seeds... [0.155s] Searching alignments... [103.067s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.972s] Building query seed array... [1.994s] Computing hash join... [3.982s] Masking low complexity seeds... [0.167s] Searching alignments... [77.612s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.888s] Building query seed array... [1.608s] Computing hash join... [3.933s] Masking low complexity seeds... [0.162s] Searching alignments... [79.342s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.375s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.475s] Sorting trace points... [1.188s] Computing alignments... [33.418s] Deallocating buffers... [0.025s] Loading trace points... [0.579s] Sorting trace points... [1.184s] Computing alignments... [35.008s] Deallocating buffers... [0.014s] Loading trace points... [0.056s] Sorting trace points... [1.167s] Computing alignments... [35.909s] Deallocating buffers... [0.015s] Loading trace points... [0.053s] Sorting trace points... [0.957s] Computing alignments... [35.949s] Deallocating buffers... [0.023s] Loading trace points... [0.064s] Sorting trace points... [1.03s] Computing alignments... [36.383s] Deallocating buffers... [0.024s] Loading trace points... [0.073s] Sorting trace points... [1.182s] Computing alignments... [34.185s] Deallocating buffers... [0.022s] Loading trace points... [0.076s] Sorting trace points... [0.914s] Computing alignments... [34.548s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [0.935s] Computing alignments... [35.178s] Deallocating buffers... [0.023s] Loading trace points... [0.051s] Sorting trace points... [1.187s] Computing alignments... [34.626s] Deallocating buffers... [0.021s] Loading trace points... [0.053s] Sorting trace points... [1.07s] Computing alignments... [35.907s] Deallocating buffers... [0.023s] Loading trace points... [0.096s] Sorting trace points... [1.24s] Computing alignments... [36.69s] Deallocating buffers... [0.026s] Loading trace points... [0.093s] Sorting trace points... [1.302s] Computing alignments... [36.502s] Deallocating buffers... [0.023s] Loading trace points... [0.112s] Sorting trace points... [1.142s] Computing alignments... [34.606s] Deallocating buffers... [0.023s] Loading trace points... [0.079s] Sorting trace points... [1.24s] Computing alignments... [35.225s] Deallocating buffers... [0.021s] Loading trace points... [0.046s] Sorting trace points... [0.923s] Computing alignments... [35.236s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.184s] Computing alignments... [35.574s] Deallocating buffers... [0.026s] Loading trace points... [0s] [591.285s] Deallocating reference... [0.059s] Loading reference sequences... [0.097s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [3079.22s] [3079.22s] Deallocating queries... [0.055s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.068s] [3.99s] Closing the database... [0s] Cleaning up... [0s] Total time = 34801.8s Reported 2908112065 pairwise alignments, 2908112065 HSPs. 5364441 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-15.trimmed.R1.fastq.gz complete: CH03-15.trimmed.R1.blastx.meganized.daa Now MEGANizing CH03-15.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH03-15.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (388.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,456.6s) Total reads: 5,364,441 With hits: 5,364,441 Alignments: 2,049,702,965 Assig. Taxonomy: 2,127,340 Assig. SEED: 105,380 Assig. EGGNOG: 27,240 Assig. GTDB: 231,891 Assig. EC: 396,863 Assig. INTERPRO2GO: 955,940 MinSupport set to: 2682 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 6,114 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12.5s) Min-supp. changes: 4,738 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7.1s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 161 Class. SEED: 512 Class. EGGNOG: 1,648 Class. GTDB: 44 Class. EC: 2,452 Class. INTERPRO2GO: 8,798 Total time: 4,874s Peak memory: 40.2 of 195.3G MEGANization of CH03-15.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-15.trimmed.R2.fastq.gz... 02e9f27c54a49f2f2595a802ec5c7889 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-15.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-15.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.352s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.712s] Opening the output file... [0s] Loading query sequences... [78.285s] Masking queries... [20.685s] Algorithm: Double-indexed Building query histograms... [17.483s] Loading reference sequences... [32.875s] Masking reference... [31.611s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [31.687s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.473s] Building query seed array... [1.894s] Computing hash join... [5.558s] Masking low complexity seeds... [0.176s] Searching alignments... [379.489s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.408s] Building query seed array... [2.479s] Computing hash join... [5.068s] Masking low complexity seeds... [0.182s] Searching alignments... [156.316s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.221s] Building query seed array... [2.348s] Computing hash join... [4.897s] Masking low complexity seeds... [0.179s] Searching alignments... [120.521s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.964s] Building query seed array... [1.913s] Computing hash join... [5.151s] Masking low complexity seeds... [0.176s] Searching alignments... [117.697s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.714s] Building query seed array... [1.699s] Computing hash join... [4.799s] Masking low complexity seeds... [0.162s] Searching alignments... [173.104s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.02s] Building query seed array... [1.949s] Computing hash join... [5.076s] Masking low complexity seeds... [0.161s] Searching alignments... [135.643s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.678s] Building query seed array... [2.186s] Computing hash join... [4.674s] Masking low complexity seeds... [0.164s] Searching alignments... [100.63s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.041s] Building query seed array... [1.838s] Computing hash join... [4.791s] Masking low complexity seeds... [0.165s] Searching alignments... [105.315s] Deallocating memory... [0s] Deallocating buffers... [0.528s] Clearing query masking... [1.313s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.102s] Sorting trace points... [1.537s] Computing alignments... [45.323s] Deallocating buffers... [0.029s] Loading trace points... [0.002s] Sorting trace points... [1.249s] Computing alignments... [44.402s] Deallocating buffers... [0.037s] Loading trace points... [0.054s] Sorting trace points... [1.485s] Computing alignments... [45.168s] Deallocating buffers... [0.034s] Loading trace points... [0.079s] Sorting trace points... [1.519s] Computing alignments... [46.533s] Deallocating buffers... [0.038s] Loading trace points... [0.067s] Sorting trace points... [1.507s] Computing alignments... [46.631s] Deallocating buffers... [0.026s] Loading trace points... [0.09s] Sorting trace points... [1.377s] Computing alignments... [44.677s] Deallocating buffers... [0.027s] Loading trace points... [0.054s] Sorting trace points... [1.525s] Computing alignments... [45.079s] Deallocating buffers... [0.035s] Loading trace points... [0.052s] Sorting trace points... [1.46s] Computing alignments... [45.658s] Deallocating buffers... [0.026s] Loading trace points... [0.094s] Sorting trace points... [1.474s] Computing alignments... [44.558s] Deallocating buffers... [0.017s] Loading trace points... [0.057s] Sorting trace points... [1.401s] Computing alignments... [45.528s] Deallocating buffers... [0.028s] Loading trace points... [0.069s] Sorting trace points... [1.579s] Computing alignments... [46.417s] Deallocating buffers... [0.031s] Loading trace points... [0.103s] Sorting trace points... [1.557s] Computing alignments... [46.182s] Deallocating buffers... [0.028s] Loading trace points... [0.362s] Sorting trace points... [1.437s] Computing alignments... [45.512s] Deallocating buffers... [0.039s] Loading trace points... [0.067s] Sorting trace points... [1.464s] Computing alignments... [46.036s] Deallocating buffers... [0.037s] Loading trace points... [0.043s] Sorting trace points... [1.094s] Computing alignments... [44.524s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.491s] Computing alignments... [44.042s] Deallocating buffers... [0.039s] Loading trace points... [0s] [759.415s] Deallocating reference... [0.063s] Loading reference sequences... [30.466s] Masking reference... [32.081s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.304s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.356s] Building query seed array... [1.886s] Computing hash join... [4.949s] Masking low complexity seeds... [0.173s] Searching alignments... [375.788s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.232s] Building query seed array... [2.039s] Computing hash join... [4.944s] Masking low complexity seeds... [0.18s] Searching alignments... [154.433s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.284s] Building query seed array... [2.14s] Computing hash join... [4.989s] Masking low complexity seeds... [0.189s] Searching alignments... [119.891s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.091s] Building query seed array... [1.861s] Computing hash join... [5.305s] Masking low complexity seeds... [0.187s] Searching alignments... [114.271s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.976s] Building query seed array... [1.605s] Computing hash join... [4.967s] Masking low complexity seeds... [0.182s] Searching alignments... [169.644s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.007s] Building query seed array... [1.85s] Computing hash join... [5.093s] Masking low complexity seeds... [0.175s] Searching alignments... [133.291s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.361s] Building query seed array... [1.915s] Computing hash join... [5.404s] Masking low complexity seeds... [0.175s] Searching alignments... [99.591s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.028s] Building query seed array... [1.672s] Computing hash join... [5.275s] Masking low complexity seeds... [0.169s] Searching alignments... [104.338s] Deallocating memory... [0s] Deallocating buffers... [0.158s] Clearing query masking... [1.359s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.111s] Sorting trace points... [1.523s] Computing alignments... [47.616s] Deallocating buffers... [0.071s] Loading trace points... [0.099s] Sorting trace points... [1.459s] Computing alignments... [45.665s] Deallocating buffers... [0.076s] Loading trace points... [0.045s] Sorting trace points... [1.126s] Computing alignments... [47.444s] Deallocating buffers... [0.072s] Loading trace points... [0.036s] Sorting trace points... [1.433s] Computing alignments... [47.836s] Deallocating buffers... [0.062s] Loading trace points... [0.071s] Sorting trace points... [1.081s] Computing alignments... [49.199s] Deallocating buffers... [0.069s] Loading trace points... [0.075s] Sorting trace points... [1.084s] Computing alignments... [46.77s] Deallocating buffers... [0.072s] Loading trace points... [0.068s] Sorting trace points... [1.516s] Computing alignments... [48.371s] Deallocating buffers... [0.055s] Loading trace points... [0.062s] Sorting trace points... [1.462s] Computing alignments... [47.993s] Deallocating buffers... [0.056s] Loading trace points... [0.052s] Sorting trace points... [1.449s] Computing alignments... [47.581s] Deallocating buffers... [0.05s] Loading trace points... [0.107s] Sorting trace points... [1.391s] Computing alignments... [48.141s] Deallocating buffers... [0.067s] Loading trace points... [0.081s] Sorting trace points... [1.255s] Computing alignments... [48.969s] Deallocating buffers... [0.067s] Loading trace points... [0.065s] Sorting trace points... [1.492s] Computing alignments... [48.167s] Deallocating buffers... [0.074s] Loading trace points... [0.078s] Sorting trace points... [1.112s] Computing alignments... [47.874s] Deallocating buffers... [0.067s] Loading trace points... [0.085s] Sorting trace points... [1.45s] Computing alignments... [48.772s] Deallocating buffers... [0.063s] Loading trace points... [0.09s] Sorting trace points... [1.141s] Computing alignments... [45.6s] Deallocating buffers... [0.061s] Loading trace points... [0s] Sorting trace points... [1.247s] Computing alignments... [45.258s] Deallocating buffers... [0.054s] Loading trace points... [0s] [792.739s] Deallocating reference... [0.082s] Loading reference sequences... [28.967s] Masking reference... [30.884s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.402s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.599s] Building query seed array... [1.85s] Computing hash join... [5.03s] Masking low complexity seeds... [0.173s] Searching alignments... [375.933s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.497s] Building query seed array... [2.025s] Computing hash join... [5.541s] Masking low complexity seeds... [0.201s] Searching alignments... [154.463s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.396s] Building query seed array... [2.137s] Computing hash join... [4.884s] Masking low complexity seeds... [0.173s] Searching alignments... [119.171s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.272s] Building query seed array... [1.755s] Computing hash join... [4.983s] Masking low complexity seeds... [0.182s] Searching alignments... [116.423s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.954s] Building query seed array... [1.641s] Computing hash join... [4.732s] Masking low complexity seeds... [0.172s] Searching alignments... [171.034s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.73s] Building query seed array... [1.896s] Computing hash join... [5.097s] Masking low complexity seeds... [0.168s] Searching alignments... [135.233s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.328s] Building query seed array... [1.947s] Computing hash join... [5.183s] Masking low complexity seeds... [0.175s] Searching alignments... [98.309s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.889s] Building query seed array... [1.657s] Computing hash join... [5.438s] Masking low complexity seeds... [0.176s] Searching alignments... [103.554s] Deallocating memory... [0s] Deallocating buffers... [0.164s] Clearing query masking... [1.455s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.041s] Sorting trace points... [1.575s] Computing alignments... [46.709s] Deallocating buffers... [0.074s] Loading trace points... [0.077s] Sorting trace points... [1.307s] Computing alignments... [45.61s] Deallocating buffers... [0.058s] Loading trace points... [0.066s] Sorting trace points... [1.089s] Computing alignments... [46.961s] Deallocating buffers... [0.057s] Loading trace points... [0.059s] Sorting trace points... [1.232s] Computing alignments... [48.064s] Deallocating buffers... [0.051s] Loading trace points... [0.082s] Sorting trace points... [1.466s] Computing alignments... [48.789s] Deallocating buffers... [0.07s] Loading trace points... [0.049s] Sorting trace points... [1.292s] Computing alignments... [46.22s] Deallocating buffers... [0.066s] Loading trace points... [0.086s] Sorting trace points... [1.48s] Computing alignments... [47.803s] Deallocating buffers... [0.071s] Loading trace points... [0.065s] Sorting trace points... [1.449s] Computing alignments... [47.571s] Deallocating buffers... [0.064s] Loading trace points... [0.066s] Sorting trace points... [1.45s] Computing alignments... [46.949s] Deallocating buffers... [0.063s] Loading trace points... [0.066s] Sorting trace points... [1.503s] Computing alignments... [47.727s] Deallocating buffers... [0.068s] Loading trace points... [0.064s] Sorting trace points... [1.3s] Computing alignments... [49.119s] Deallocating buffers... [0.072s] Loading trace points... [0.512s] Sorting trace points... [1.282s] Computing alignments... [47.752s] Deallocating buffers... [0.065s] Loading trace points... [0.105s] Sorting trace points... [1.284s] Computing alignments... [48.408s] Deallocating buffers... [0.054s] Loading trace points... [0.064s] Sorting trace points... [1.15s] Computing alignments... [48.256s] Deallocating buffers... [0.066s] Loading trace points... [0.067s] Sorting trace points... [1.464s] Computing alignments... [46.416s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [1.352s] Computing alignments... [44.473s] Deallocating buffers... [0.05s] Loading trace points... [0s] [789.058s] Deallocating reference... [0.063s] Loading reference sequences... [30.729s] Masking reference... [30.947s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.303s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.189s] Building query seed array... [1.828s] Computing hash join... [6.295s] Masking low complexity seeds... [0.266s] Searching alignments... [381.691s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.983s] Building query seed array... [2.357s] Computing hash join... [5.859s] Masking low complexity seeds... [0.192s] Searching alignments... [157.179s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.591s] Building query seed array... [2.344s] Computing hash join... [5.98s] Masking low complexity seeds... [0.232s] Searching alignments... [121.019s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.434s] Building query seed array... [1.891s] Computing hash join... [4.976s] Masking low complexity seeds... [0.187s] Searching alignments... [118.051s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.539s] Building query seed array... [1.775s] Computing hash join... [4.9s] Masking low complexity seeds... [0.172s] Searching alignments... [175.126s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.437s] Building query seed array... [1.964s] Computing hash join... [5.673s] Masking low complexity seeds... [0.191s] Searching alignments... [134.866s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.769s] Building query seed array... [2.175s] Computing hash join... [5.701s] Masking low complexity seeds... [0.192s] Searching alignments... [100.947s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.222s] Building query seed array... [1.743s] Computing hash join... [5.376s] Masking low complexity seeds... [0.225s] Searching alignments... [104.645s] Deallocating memory... [0s] Deallocating buffers... [1.717s] Clearing query masking... [1.337s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.064s] Sorting trace points... [1.455s] Computing alignments... [46.032s] Deallocating buffers... [0.031s] Loading trace points... [0.086s] Sorting trace points... [1.158s] Computing alignments... [44.736s] Deallocating buffers... [0.032s] Loading trace points... [0.063s] Sorting trace points... [1.465s] Computing alignments... [46.233s] Deallocating buffers... [0.033s] Loading trace points... [0.057s] Sorting trace points... [1.516s] Computing alignments... [46.908s] Deallocating buffers... [0.037s] Loading trace points... [0.067s] Sorting trace points... [1.259s] Computing alignments... [47.967s] Deallocating buffers... [0.039s] Loading trace points... [0.428s] Sorting trace points... [1.324s] Computing alignments... [45.819s] Deallocating buffers... [0.038s] Loading trace points... [0.049s] Sorting trace points... [1.388s] Computing alignments... [46.529s] Deallocating buffers... [0.032s] Loading trace points... [0.062s] Sorting trace points... [1.54s] Computing alignments... [46.668s] Deallocating buffers... [0.026s] Loading trace points... [0.062s] Sorting trace points... [1.441s] Computing alignments... [46.077s] Deallocating buffers... [0.029s] Loading trace points... [0.048s] Sorting trace points... [1.59s] Computing alignments... [46.744s] Deallocating buffers... [0.037s] Loading trace points... [1.073s] Sorting trace points... [1.313s] Computing alignments... [47.799s] Deallocating buffers... [0.038s] Loading trace points... [0.092s] Sorting trace points... [1.523s] Computing alignments... [46.913s] Deallocating buffers... [0.035s] Loading trace points... [0.077s] Sorting trace points... [1.533s] Computing alignments... [46.387s] Deallocating buffers... [0.032s] Loading trace points... [0.041s] Sorting trace points... [1.456s] Computing alignments... [46.794s] Deallocating buffers... [0.037s] Loading trace points... [0.002s] Sorting trace points... [1.502s] Computing alignments... [44.879s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [1.174s] Computing alignments... [44.497s] Deallocating buffers... [0.03s] Loading trace points... [0s] [774.609s] Deallocating reference... [0.084s] Loading reference sequences... [249.895s] Masking reference... [30.882s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.915s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.392s] Building query seed array... [1.921s] Computing hash join... [5.437s] Masking low complexity seeds... [0.179s] Searching alignments... [375.705s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.407s] Building query seed array... [2.126s] Computing hash join... [5.267s] Masking low complexity seeds... [0.18s] Searching alignments... [157.426s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.436s] Building query seed array... [2.188s] Computing hash join... [5.198s] Masking low complexity seeds... [0.189s] Searching alignments... [121.911s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.223s] Building query seed array... [1.856s] Computing hash join... [5.389s] Masking low complexity seeds... [0.177s] Searching alignments... [116.381s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.03s] Building query seed array... [1.674s] Computing hash join... [5.308s] Masking low complexity seeds... [0.177s] Searching alignments... [174.892s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.148s] Building query seed array... [1.86s] Computing hash join... [5.231s] Masking low complexity seeds... [0.172s] Searching alignments... [138.985s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.383s] Building query seed array... [1.978s] Computing hash join... [5.291s] Masking low complexity seeds... [0.171s] Searching alignments... [99.955s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.114s] Building query seed array... [1.683s] Computing hash join... [5.297s] Masking low complexity seeds... [0.189s] Searching alignments... [103.361s] Deallocating memory... [0.005s] Deallocating buffers... [0.207s] Clearing query masking... [1.325s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.225s] Sorting trace points... [1.257s] Computing alignments... [48.329s] Deallocating buffers... [0.057s] Loading trace points... [0.366s] Sorting trace points... [1.164s] Computing alignments... [46.856s] Deallocating buffers... [0.047s] Loading trace points... [0.071s] Sorting trace points... [1.216s] Computing alignments... [48.566s] Deallocating buffers... [0.049s] Loading trace points... [0.072s] Sorting trace points... [1.576s] Computing alignments... [49.724s] Deallocating buffers... [0.044s] Loading trace points... [0.049s] Sorting trace points... [1.542s] Computing alignments... [50.362s] Deallocating buffers... [0.042s] Loading trace points... [0.071s] Sorting trace points... [1.524s] Computing alignments... [48.086s] Deallocating buffers... [0.037s] Loading trace points... [0.062s] Sorting trace points... [1.409s] Computing alignments... [49.179s] Deallocating buffers... [0.042s] Loading trace points... [0.061s] Sorting trace points... [1.325s] Computing alignments... [49.023s] Deallocating buffers... [0.042s] Loading trace points... [0.06s] Sorting trace points... [1.323s] Computing alignments... [48.856s] Deallocating buffers... [0.041s] Loading trace points... [0.063s] Sorting trace points... [1.14s] Computing alignments... [49.433s] Deallocating buffers... [0.05s] Loading trace points... [0.072s] Sorting trace points... [1.356s] Computing alignments... [50.336s] Deallocating buffers... [0.046s] Loading trace points... [0.065s] Sorting trace points... [1.512s] Computing alignments... [48.892s] Deallocating buffers... [0.047s] Loading trace points... [0.05s] Sorting trace points... [1.217s] Computing alignments... [49.119s] Deallocating buffers... [0.037s] Loading trace points... [0.001s] Sorting trace points... [1.363s] Computing alignments... [49.169s] Deallocating buffers... [0.047s] Loading trace points... [0.846s] Sorting trace points... [1.265s] Computing alignments... [47.828s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [1.466s] Computing alignments... [46.261s] Deallocating buffers... [0.036s] Loading trace points... [0s] [812.624s] Deallocating reference... [0.058s] Loading reference sequences... [254.931s] Masking reference... [30.851s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.165s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.024s] Building query seed array... [1.835s] Computing hash join... [5.123s] Masking low complexity seeds... [0.181s] Searching alignments... [372.124s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.242s] Building query seed array... [2.088s] Computing hash join... [5.41s] Masking low complexity seeds... [0.184s] Searching alignments... [152.043s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.516s] Building query seed array... [2.146s] Computing hash join... [5.609s] Masking low complexity seeds... [0.19s] Searching alignments... [118.049s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.245s] Building query seed array... [1.786s] Computing hash join... [5.087s] Masking low complexity seeds... [0.183s] Searching alignments... [114.77s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.586s] Building query seed array... [1.657s] Computing hash join... [4.898s] Masking low complexity seeds... [0.172s] Searching alignments... [169.582s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.34s] Building query seed array... [1.907s] Computing hash join... [5.12s] Masking low complexity seeds... [0.174s] Searching alignments... [137.411s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.235s] Building query seed array... [1.995s] Computing hash join... [5.185s] Masking low complexity seeds... [0.175s] Searching alignments... [100.069s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.05s] Building query seed array... [1.687s] Computing hash join... [5.289s] Masking low complexity seeds... [0.173s] Searching alignments... [104.994s] Deallocating memory... [0s] Deallocating buffers... [0.166s] Clearing query masking... [1.305s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.985s] Sorting trace points... [1.527s] Computing alignments... [46.565s] Deallocating buffers... [0.029s] Loading trace points... [0.061s] Sorting trace points... [1.365s] Computing alignments... [45.584s] Deallocating buffers... [0.029s] Loading trace points... [0.064s] Sorting trace points... [1.097s] Computing alignments... [47.715s] Deallocating buffers... [0.035s] Loading trace points... [0.002s] Sorting trace points... [1.521s] Computing alignments... [48.298s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.165s] Computing alignments... [48.983s] Deallocating buffers... [0.029s] Loading trace points... [0.047s] Sorting trace points... [1.194s] Computing alignments... [47.146s] Deallocating buffers... [0.027s] Loading trace points... [0.001s] Sorting trace points... [1.467s] Computing alignments... [47.742s] Deallocating buffers... [0.024s] Loading trace points... [0.072s] Sorting trace points... [1.49s] Computing alignments... [47.775s] Deallocating buffers... [0.028s] Loading trace points... [0.074s] Sorting trace points... [1.28s] Computing alignments... [46.962s] Deallocating buffers... [0.027s] Loading trace points... [0.066s] Sorting trace points... [1.477s] Computing alignments... [48.097s] Deallocating buffers... [0.03s] Loading trace points... [0.069s] Sorting trace points... [1.202s] Computing alignments... [49.345s] Deallocating buffers... [0.035s] Loading trace points... [0.078s] Sorting trace points... [1.591s] Computing alignments... [47.408s] Deallocating buffers... [0.018s] Loading trace points... [0.041s] Sorting trace points... [1.345s] Computing alignments... [47.829s] Deallocating buffers... [0.032s] Loading trace points... [0.078s] Sorting trace points... [1.518s] Computing alignments... [47.628s] Deallocating buffers... [0.029s] Loading trace points... [0.057s] Sorting trace points... [1.467s] Computing alignments... [46.518s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.345s] Computing alignments... [44.757s] Deallocating buffers... [0.03s] Loading trace points... [0s] [789.682s] Deallocating reference... [0.085s] Loading reference sequences... [30.904s] Masking reference... [31.171s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.512s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.491s] Building query seed array... [1.859s] Computing hash join... [6.227s] Masking low complexity seeds... [0.225s] Searching alignments... [377.667s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.557s] Building query seed array... [2.32s] Computing hash join... [4.999s] Masking low complexity seeds... [0.186s] Searching alignments... [154.769s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.147s] Building query seed array... [2.392s] Computing hash join... [5.799s] Masking low complexity seeds... [0.191s] Searching alignments... [119.598s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.151s] Building query seed array... [1.884s] Computing hash join... [5.425s] Masking low complexity seeds... [0.186s] Searching alignments... [114.9s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.261s] Building query seed array... [1.725s] Computing hash join... [5.641s] Masking low complexity seeds... [0.179s] Searching alignments... [174.022s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.08s] Building query seed array... [2.033s] Computing hash join... [5.574s] Masking low complexity seeds... [0.179s] Searching alignments... [133.749s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.793s] Building query seed array... [2.112s] Computing hash join... [5.463s] Masking low complexity seeds... [0.186s] Searching alignments... [99.873s] Deallocating memory... [0.003s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.509s] Building query seed array... [1.767s] Computing hash join... [5.471s] Masking low complexity seeds... [0.218s] Searching alignments... [104.672s] Deallocating memory... [0s] Deallocating buffers... [1.655s] Clearing query masking... [1.371s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.043s] Sorting trace points... [1.514s] Computing alignments... [47.115s] Deallocating buffers... [0.031s] Loading trace points... [0.081s] Sorting trace points... [1.077s] Computing alignments... [46.407s] Deallocating buffers... [0.033s] Loading trace points... [0.074s] Sorting trace points... [1.526s] Computing alignments... [47.922s] Deallocating buffers... [0.034s] Loading trace points... [0.002s] Sorting trace points... [1.513s] Computing alignments... [48.796s] Deallocating buffers... [0.035s] Loading trace points... [0.001s] Sorting trace points... [1.444s] Computing alignments... [49.425s] Deallocating buffers... [0.029s] Loading trace points... [0.067s] Sorting trace points... [1.5s] Computing alignments... [46.962s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.465s] Computing alignments... [48.357s] Deallocating buffers... [0.032s] Loading trace points... [0.131s] Sorting trace points... [1.522s] Computing alignments... [48.006s] Deallocating buffers... [0.027s] Loading trace points... [0.065s] Sorting trace points... [1.213s] Computing alignments... [47.178s] Deallocating buffers... [0.027s] Loading trace points... [0.103s] Sorting trace points... [1.523s] Computing alignments... [48.288s] Deallocating buffers... [0.038s] Loading trace points... [0.11s] Sorting trace points... [1.222s] Computing alignments... [49.72s] Deallocating buffers... [0.031s] Loading trace points... [0.049s] Sorting trace points... [1.516s] Computing alignments... [48.331s] Deallocating buffers... [0.029s] Loading trace points... [0.053s] Sorting trace points... [1.271s] Computing alignments... [48.177s] Deallocating buffers... [0.037s] Loading trace points... [0.12s] Sorting trace points... [1.493s] Computing alignments... [48.332s] Deallocating buffers... [0.019s] Loading trace points... [0.08s] Sorting trace points... [1.172s] Computing alignments... [46.994s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.441s] Computing alignments... [45.44s] Deallocating buffers... [0.022s] Loading trace points... [0s] [797.474s] Deallocating reference... [0.062s] Loading reference sequences... [31.151s] Masking reference... [30.855s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.576s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.73s] Building query seed array... [1.87s] Computing hash join... [5.097s] Masking low complexity seeds... [0.179s] Searching alignments... [371.578s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.778s] Building query seed array... [2.066s] Computing hash join... [5.418s] Masking low complexity seeds... [0.183s] Searching alignments... [152.498s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.485s] Building query seed array... [2.141s] Computing hash join... [5.376s] Masking low complexity seeds... [0.179s] Searching alignments... [119.513s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.129s] Building query seed array... [1.778s] Computing hash join... [5.206s] Masking low complexity seeds... [0.174s] Searching alignments... [115.027s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.254s] Building query seed array... [1.637s] Computing hash join... [5.147s] Masking low complexity seeds... [0.182s] Searching alignments... [172.799s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.256s] Building query seed array... [1.926s] Computing hash join... [5.321s] Masking low complexity seeds... [0.174s] Searching alignments... [134.062s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.353s] Building query seed array... [1.978s] Computing hash join... [5.311s] Masking low complexity seeds... [0.176s] Searching alignments... [99.888s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.767s] Building query seed array... [1.649s] Computing hash join... [5.12s] Masking low complexity seeds... [0.17s] Searching alignments... [104.195s] Deallocating memory... [0s] Deallocating buffers... [0.165s] Clearing query masking... [1.307s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.09s] Sorting trace points... [1.357s] Computing alignments... [44.985s] Deallocating buffers... [0.028s] Loading trace points... [0.068s] Sorting trace points... [1.43s] Computing alignments... [44.215s] Deallocating buffers... [0.032s] Loading trace points... [0.061s] Sorting trace points... [1.417s] Computing alignments... [45.751s] Deallocating buffers... [0.021s] Loading trace points... [0.063s] Sorting trace points... [1.519s] Computing alignments... [46.174s] Deallocating buffers... [0.027s] Loading trace points... [0.072s] Sorting trace points... [1.476s] Computing alignments... [47.065s] Deallocating buffers... [0.032s] Loading trace points... [0.233s] Sorting trace points... [1.165s] Computing alignments... [45.162s] Deallocating buffers... [0.029s] Loading trace points... [0.075s] Sorting trace points... [1.397s] Computing alignments... [45.518s] Deallocating buffers... [0.029s] Loading trace points... [0.058s] Sorting trace points... [1.473s] Computing alignments... [45.621s] Deallocating buffers... [0.027s] Loading trace points... [0.058s] Sorting trace points... [1.428s] Computing alignments... [45.364s] Deallocating buffers... [0.028s] Loading trace points... [0.055s] Sorting trace points... [1.316s] Computing alignments... [46.008s] Deallocating buffers... [0.032s] Loading trace points... [0.087s] Sorting trace points... [1.457s] Computing alignments... [46.832s] Deallocating buffers... [0.034s] Loading trace points... [0.064s] Sorting trace points... [1.539s] Computing alignments... [46.034s] Deallocating buffers... [0.034s] Loading trace points... [0.055s] Sorting trace points... [1.465s] Computing alignments... [45.805s] Deallocating buffers... [0.029s] Loading trace points... [0.079s] Sorting trace points... [1.528s] Computing alignments... [45.637s] Deallocating buffers... [0.034s] Loading trace points... [0.061s] Sorting trace points... [1.378s] Computing alignments... [44.233s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.438s] Computing alignments... [44.304s] Deallocating buffers... [0.029s] Loading trace points... [0s] [761.273s] Deallocating reference... [0.089s] Loading reference sequences... [28.904s] Masking reference... [30.873s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.004s] Building reference histograms... [32.72s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.532s] Building query seed array... [1.863s] Computing hash join... [5.26s] Masking low complexity seeds... [0.179s] Searching alignments... [377.911s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.612s] Building query seed array... [2.057s] Computing hash join... [5.399s] Masking low complexity seeds... [0.183s] Searching alignments... [154.714s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.067s] Building query seed array... [2.151s] Computing hash join... [5.082s] Masking low complexity seeds... [0.173s] Searching alignments... [122.141s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.129s] Building query seed array... [1.783s] Computing hash join... [5.249s] Masking low complexity seeds... [0.176s] Searching alignments... [115.045s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.939s] Building query seed array... [1.662s] Computing hash join... [5.231s] Masking low complexity seeds... [0.179s] Searching alignments... [168.414s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.26s] Building query seed array... [1.856s] Computing hash join... [5.27s] Masking low complexity seeds... [0.179s] Searching alignments... [134.798s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.049s] Building query seed array... [1.904s] Computing hash join... [5.221s] Masking low complexity seeds... [0.174s] Searching alignments... [101.687s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.214s] Building query seed array... [1.716s] Computing hash join... [5.434s] Masking low complexity seeds... [0.184s] Searching alignments... [105.292s] Deallocating memory... [0s] Deallocating buffers... [0.191s] Clearing query masking... [1.347s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.033s] Sorting trace points... [1.528s] Computing alignments... [45.826s] Deallocating buffers... [0.049s] Loading trace points... [0.38s] Sorting trace points... [1.43s] Computing alignments... [44.702s] Deallocating buffers... [0.051s] Loading trace points... [0.059s] Sorting trace points... [1.488s] Computing alignments... [46.35s] Deallocating buffers... [0.044s] Loading trace points... [0.001s] Sorting trace points... [1.512s] Computing alignments... [47.164s] Deallocating buffers... [0.037s] Loading trace points... [0.09s] Sorting trace points... [1.518s] Computing alignments... [48.003s] Deallocating buffers... [0.036s] Loading trace points... [0.043s] Sorting trace points... [1.299s] Computing alignments... [45.181s] Deallocating buffers... [0.044s] Loading trace points... [0.001s] Sorting trace points... [1.536s] Computing alignments... [46.789s] Deallocating buffers... [0.045s] Loading trace points... [0.085s] Sorting trace points... [1.206s] Computing alignments... [46.361s] Deallocating buffers... [0.039s] Loading trace points... [0.068s] Sorting trace points... [1.472s] Computing alignments... [46.274s] Deallocating buffers... [0.043s] Loading trace points... [0.063s] Sorting trace points... [1.2s] Computing alignments... [46.864s] Deallocating buffers... [0.044s] Loading trace points... [0.074s] Sorting trace points... [1.349s] Computing alignments... [47.412s] Deallocating buffers... [0.04s] Loading trace points... [0.625s] Sorting trace points... [1.569s] Computing alignments... [46.553s] Deallocating buffers... [0.048s] Loading trace points... [0.045s] Sorting trace points... [1.339s] Computing alignments... [46.42s] Deallocating buffers... [0.051s] Loading trace points... [0.083s] Sorting trace points... [1.201s] Computing alignments... [46.406s] Deallocating buffers... [0.033s] Loading trace points... [0.07s] Sorting trace points... [1.214s] Computing alignments... [44.803s] Deallocating buffers... [0.043s] Loading trace points... [0s] Sorting trace points... [1.454s] Computing alignments... [44.145s] Deallocating buffers... [0.037s] Loading trace points... [0s] [772.061s] Deallocating reference... [0.086s] Loading reference sequences... [30.945s] Masking reference... [32.118s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [33.158s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.153s] Building query seed array... [1.84s] Computing hash join... [5.96s] Masking low complexity seeds... [0.185s] Searching alignments... [379.509s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.242s] Building query seed array... [2.291s] Computing hash join... [5.877s] Masking low complexity seeds... [0.185s] Searching alignments... [153.956s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.888s] Building query seed array... [2.51s] Computing hash join... [5.188s] Masking low complexity seeds... [0.186s] Searching alignments... [118.758s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.351s] Building query seed array... [1.917s] Computing hash join... [5.806s] Masking low complexity seeds... [0.196s] Searching alignments... [115.667s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.185s] Building query seed array... [1.781s] Computing hash join... [5.841s] Masking low complexity seeds... [0.178s] Searching alignments... [175.871s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.332s] Building query seed array... [2.038s] Computing hash join... [5.249s] Masking low complexity seeds... [0.163s] Searching alignments... [135.802s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.987s] Building query seed array... [2.234s] Computing hash join... [5.326s] Masking low complexity seeds... [0.201s] Searching alignments... [99.506s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.562s] Building query seed array... [1.813s] Computing hash join... [5.015s] Masking low complexity seeds... [0.187s] Searching alignments... [104.08s] Deallocating memory... [0s] Deallocating buffers... [1.376s] Clearing query masking... [1.289s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.123s] Sorting trace points... [1.429s] Computing alignments... [41.344s] Deallocating buffers... [0.018s] Loading trace points... [0.068s] Sorting trace points... [1.447s] Computing alignments... [41.149s] Deallocating buffers... [0.022s] Loading trace points... [0.054s] Sorting trace points... [1.45s] Computing alignments... [42.218s] Deallocating buffers... [0.033s] Loading trace points... [0.185s] Sorting trace points... [1.531s] Computing alignments... [43.032s] Deallocating buffers... [0.029s] Loading trace points... [0.086s] Sorting trace points... [1.084s] Computing alignments... [43.265s] Deallocating buffers... [0.028s] Loading trace points... [0.066s] Sorting trace points... [1.066s] Computing alignments... [41.949s] Deallocating buffers... [0.028s] Loading trace points... [0.131s] Sorting trace points... [1.249s] Computing alignments... [42.302s] Deallocating buffers... [0.027s] Loading trace points... [0.066s] Sorting trace points... [1.163s] Computing alignments... [42.333s] Deallocating buffers... [0.028s] Loading trace points... [0.106s] Sorting trace points... [1.274s] Computing alignments... [41.744s] Deallocating buffers... [0.02s] Loading trace points... [0.057s] Sorting trace points... [1.513s] Computing alignments... [42.407s] Deallocating buffers... [0.027s] Loading trace points... [0.068s] Sorting trace points... [1.186s] Computing alignments... [43.013s] Deallocating buffers... [0.033s] Loading trace points... [0.064s] Sorting trace points... [1.536s] Computing alignments... [42.934s] Deallocating buffers... [0.037s] Loading trace points... [0.054s] Sorting trace points... [1.433s] Computing alignments... [42.041s] Deallocating buffers... [0.018s] Loading trace points... [0.072s] Sorting trace points... [1.129s] Computing alignments... [42.174s] Deallocating buffers... [0.028s] Loading trace points... [0.064s] Sorting trace points... [1.453s] Computing alignments... [41.621s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.122s] Computing alignments... [40.87s] Deallocating buffers... [0.028s] Loading trace points... [0s] [705.326s] Deallocating reference... [0.063s] Loading reference sequences... [29.145s] Masking reference... [30.867s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [32.994s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.33s] Building query seed array... [1.848s] Computing hash join... [6.135s] Masking low complexity seeds... [0.286s] Searching alignments... [373.258s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.288s] Building query seed array... [2.271s] Computing hash join... [6.242s] Masking low complexity seeds... [0.203s] Searching alignments... [154.415s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.929s] Building query seed array... [2.253s] Computing hash join... [5.115s] Masking low complexity seeds... [0.212s] Searching alignments... [120.997s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.547s] Building query seed array... [2.049s] Computing hash join... [5.575s] Masking low complexity seeds... [0.192s] Searching alignments... [117.603s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.567s] Building query seed array... [1.83s] Computing hash join... [4.698s] Masking low complexity seeds... [0.192s] Searching alignments... [174.518s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.884s] Building query seed array... [2.01s] Computing hash join... [4.908s] Masking low complexity seeds... [0.188s] Searching alignments... [135.072s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.796s] Building query seed array... [2.368s] Computing hash join... [5.254s] Masking low complexity seeds... [0.189s] Searching alignments... [100.477s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.919s] Building query seed array... [1.898s] Computing hash join... [4.947s] Masking low complexity seeds... [0.18s] Searching alignments... [103.256s] Deallocating memory... [0s] Deallocating buffers... [1.859s] Clearing query masking... [1.262s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.85s] Sorting trace points... [1.558s] Computing alignments... [49.846s] Deallocating buffers... [0.065s] Loading trace points... [0.07s] Sorting trace points... [1.393s] Computing alignments... [48.615s] Deallocating buffers... [0.062s] Loading trace points... [0.06s] Sorting trace points... [1.105s] Computing alignments... [50.354s] Deallocating buffers... [0.058s] Loading trace points... [0.064s] Sorting trace points... [1.41s] Computing alignments... [51.307s] Deallocating buffers... [0.057s] Loading trace points... [0.034s] Sorting trace points... [1.426s] Computing alignments... [51.846s] Deallocating buffers... [0.065s] Loading trace points... [0.1s] Sorting trace points... [1.212s] Computing alignments... [49.281s] Deallocating buffers... [0.059s] Loading trace points... [0.043s] Sorting trace points... [1.417s] Computing alignments... [50.72s] Deallocating buffers... [0.043s] Loading trace points... [0.064s] Sorting trace points... [1.48s] Computing alignments... [50.469s] Deallocating buffers... [0.047s] Loading trace points... [0.085s] Sorting trace points... [1.371s] Computing alignments... [49.928s] Deallocating buffers... [0.058s] Loading trace points... [0.038s] Sorting trace points... [1.293s] Computing alignments... [50.67s] Deallocating buffers... [0.057s] Loading trace points... [0.123s] Sorting trace points... [1.403s] Computing alignments... [52.093s] Deallocating buffers... [0.057s] Loading trace points... [0.078s] Sorting trace points... [1.128s] Computing alignments... [50.396s] Deallocating buffers... [0.047s] Loading trace points... [0.063s] Sorting trace points... [1.439s] Computing alignments... [50.694s] Deallocating buffers... [0.05s] Loading trace points... [0.103s] Sorting trace points... [1.455s] Computing alignments... [51.27s] Deallocating buffers... [0.055s] Loading trace points... [0.072s] Sorting trace points... [1.49s] Computing alignments... [49.356s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [1.16s] Computing alignments... [47.548s] Deallocating buffers... [0.053s] Loading trace points... [0s] [837.061s] Deallocating reference... [0.061s] Loading reference sequences... [249.553s] Masking reference... [31.131s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [33.451s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.305s] Building query seed array... [1.818s] Computing hash join... [5.406s] Masking low complexity seeds... [0.185s] Searching alignments... [374.557s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.308s] Building query seed array... [2.028s] Computing hash join... [5.534s] Masking low complexity seeds... [0.19s] Searching alignments... [153.798s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.615s] Building query seed array... [2.196s] Computing hash join... [5.589s] Masking low complexity seeds... [0.185s] Searching alignments... [120.948s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.039s] Building query seed array... [1.799s] Computing hash join... [5.379s] Masking low complexity seeds... [0.187s] Searching alignments... [116.653s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.099s] Building query seed array... [1.614s] Computing hash join... [5.407s] Masking low complexity seeds... [0.17s] Searching alignments... [175.943s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.344s] Building query seed array... [1.87s] Computing hash join... [5.52s] Masking low complexity seeds... [0.178s] Searching alignments... [137.872s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.235s] Building query seed array... [1.918s] Computing hash join... [5.553s] Masking low complexity seeds... [0.171s] Searching alignments... [100.079s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.202s] Building query seed array... [1.709s] Computing hash join... [5.355s] Masking low complexity seeds... [0.174s] Searching alignments... [105.443s] Deallocating memory... [0s] Deallocating buffers... [0.159s] Clearing query masking... [1.349s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.284s] Sorting trace points... [1.524s] Computing alignments... [48.846s] Deallocating buffers... [0.07s] Loading trace points... [0.041s] Sorting trace points... [1.18s] Computing alignments... [47.1s] Deallocating buffers... [0.062s] Loading trace points... [0.056s] Sorting trace points... [1.512s] Computing alignments... [48.631s] Deallocating buffers... [0.059s] Loading trace points... [0.059s] Sorting trace points... [1.391s] Computing alignments... [49.41s] Deallocating buffers... [0.052s] Loading trace points... [0.065s] Sorting trace points... [1.498s] Computing alignments... [50.258s] Deallocating buffers... [0.056s] Loading trace points... [0.077s] Sorting trace points... [1.452s] Computing alignments... [47.724s] Deallocating buffers... [0.047s] Loading trace points... [0.059s] Sorting trace points... [1.209s] Computing alignments... [49.811s] Deallocating buffers... [0.055s] Loading trace points... [0.048s] Sorting trace points... [1.118s] Computing alignments... [49.257s] Deallocating buffers... [0.053s] Loading trace points... [0.087s] Sorting trace points... [1.114s] Computing alignments... [48.639s] Deallocating buffers... [0.055s] Loading trace points... [0.1s] Sorting trace points... [1.164s] Computing alignments... [49.711s] Deallocating buffers... [0.061s] Loading trace points... [0.111s] Sorting trace points... [1.439s] Computing alignments... [50.673s] Deallocating buffers... [0.05s] Loading trace points... [0.002s] Sorting trace points... [1.151s] Computing alignments... [48.966s] Deallocating buffers... [0.058s] Loading trace points... [0.102s] Sorting trace points... [1.323s] Computing alignments... [49.758s] Deallocating buffers... [0.059s] Loading trace points... [0.063s] Sorting trace points... [1.583s] Computing alignments... [49.215s] Deallocating buffers... [0.038s] Loading trace points... [0.576s] Sorting trace points... [1.469s] Computing alignments... [47.737s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [1.444s] Computing alignments... [46.214s] Deallocating buffers... [0.049s] Loading trace points... [0s] [814.25s] Deallocating reference... [0.09s] Loading reference sequences... [30.916s] Masking reference... [31.372s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [32.956s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.788s] Building query seed array... [1.914s] Computing hash join... [5.824s] Masking low complexity seeds... [0.191s] Searching alignments... [376.37s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.643s] Building query seed array... [2.526s] Computing hash join... [5.066s] Masking low complexity seeds... [0.196s] Searching alignments... [154.185s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.685s] Building query seed array... [2.446s] Computing hash join... [5.753s] Masking low complexity seeds... [0.189s] Searching alignments... [120.174s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.291s] Building query seed array... [1.887s] Computing hash join... [5.462s] Masking low complexity seeds... [0.186s] Searching alignments... [116.947s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.715s] Building query seed array... [1.805s] Computing hash join... [5.213s] Masking low complexity seeds... [0.178s] Searching alignments... [173.699s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.173s] Building query seed array... [1.997s] Computing hash join... [5.386s] Masking low complexity seeds... [0.181s] Searching alignments... [134.857s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.904s] Building query seed array... [2.195s] Computing hash join... [5.85s] Masking low complexity seeds... [0.202s] Searching alignments... [99.941s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.367s] Building query seed array... [1.858s] Computing hash join... [5.032s] Masking low complexity seeds... [0.175s] Searching alignments... [103.021s] Deallocating memory... [0s] Deallocating buffers... [1.252s] Clearing query masking... [1.318s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.056s] Sorting trace points... [1.53s] Computing alignments... [45.149s] Deallocating buffers... [0.018s] Loading trace points... [0.058s] Sorting trace points... [1.451s] Computing alignments... [45.028s] Deallocating buffers... [0.039s] Loading trace points... [0.064s] Sorting trace points... [1.242s] Computing alignments... [46.159s] Deallocating buffers... [0.032s] Loading trace points... [0.084s] Sorting trace points... [1.511s] Computing alignments... [46.896s] Deallocating buffers... [0.029s] Loading trace points... [0.058s] Sorting trace points... [1.506s] Computing alignments... [47.69s] Deallocating buffers... [0.03s] Loading trace points... [0.061s] Sorting trace points... [1.425s] Computing alignments... [45.508s] Deallocating buffers... [0.026s] Loading trace points... [0.06s] Sorting trace points... [1.523s] Computing alignments... [46.842s] Deallocating buffers... [0.037s] Loading trace points... [0.089s] Sorting trace points... [1.235s] Computing alignments... [46.335s] Deallocating buffers... [0.02s] Loading trace points... [0.048s] Sorting trace points... [1.414s] Computing alignments... [45.87s] Deallocating buffers... [0.029s] Loading trace points... [0.105s] Sorting trace points... [1.131s] Computing alignments... [46.693s] Deallocating buffers... [0.029s] Loading trace points... [0.116s] Sorting trace points... [1.493s] Computing alignments... [47.936s] Deallocating buffers... [0.032s] Loading trace points... [0.073s] Sorting trace points... [1.27s] Computing alignments... [46.536s] Deallocating buffers... [0.03s] Loading trace points... [0.068s] Sorting trace points... [1.066s] Computing alignments... [46.523s] Deallocating buffers... [0.038s] Loading trace points... [0.092s] Sorting trace points... [1.52s] Computing alignments... [46.708s] Deallocating buffers... [0.028s] Loading trace points... [0.089s] Sorting trace points... [1.453s] Computing alignments... [45.273s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.483s] Computing alignments... [43.998s] Deallocating buffers... [0.03s] Loading trace points... [0s] [771.175s] Deallocating reference... [0.058s] Loading reference sequences... [25.094s] Masking reference... [26.063s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.004s] Building reference histograms... [26.827s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.318s] Building query seed array... [1.75s] Computing hash join... [4.085s] Masking low complexity seeds... [0.168s] Searching alignments... [298.49s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.677s] Building query seed array... [1.983s] Computing hash join... [4.529s] Masking low complexity seeds... [0.178s] Searching alignments... [123.597s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.199s] Building query seed array... [2.124s] Computing hash join... [4.027s] Masking low complexity seeds... [0.171s] Searching alignments... [97.296s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.303s] Building query seed array... [1.739s] Computing hash join... [4.024s] Masking low complexity seeds... [0.177s] Searching alignments... [93.666s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.461s] Building query seed array... [1.584s] Computing hash join... [3.789s] Masking low complexity seeds... [0.157s] Searching alignments... [138.224s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.872s] Building query seed array... [1.84s] Computing hash join... [3.829s] Masking low complexity seeds... [0.152s] Searching alignments... [110.416s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.719s] Building query seed array... [1.922s] Computing hash join... [3.891s] Masking low complexity seeds... [0.155s] Searching alignments... [81.844s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.025s] Building query seed array... [1.659s] Computing hash join... [4.286s] Masking low complexity seeds... [0.167s] Searching alignments... [85.227s] Deallocating memory... [0s] Deallocating buffers... [0.121s] Clearing query masking... [1.395s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.968s] Sorting trace points... [1.2s] Computing alignments... [35.674s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [0.961s] Computing alignments... [34.864s] Deallocating buffers... [0.024s] Loading trace points... [0.002s] Sorting trace points... [0.872s] Computing alignments... [35.742s] Deallocating buffers... [0.026s] Loading trace points... [0.076s] Sorting trace points... [1.242s] Computing alignments... [36.503s] Deallocating buffers... [0.022s] Loading trace points... [0.038s] Sorting trace points... [1.187s] Computing alignments... [37.177s] Deallocating buffers... [0.025s] Loading trace points... [0.06s] Sorting trace points... [1.155s] Computing alignments... [35.621s] Deallocating buffers... [0.021s] Loading trace points... [0.05s] Sorting trace points... [0.895s] Computing alignments... [36.245s] Deallocating buffers... [0.023s] Loading trace points... [0.053s] Sorting trace points... [0.912s] Computing alignments... [36.476s] Deallocating buffers... [0.023s] Loading trace points... [0.08s] Sorting trace points... [1.176s] Computing alignments... [35.723s] Deallocating buffers... [0.022s] Loading trace points... [0.089s] Sorting trace points... [1.265s] Computing alignments... [36.37s] Deallocating buffers... [0.022s] Loading trace points... [0.046s] Sorting trace points... [1.113s] Computing alignments... [36.654s] Deallocating buffers... [0.025s] Loading trace points... [0.108s] Sorting trace points... [1.286s] Computing alignments... [36.245s] Deallocating buffers... [0.022s] Loading trace points... [0.123s] Sorting trace points... [1.169s] Computing alignments... [36.19s] Deallocating buffers... [0.026s] Loading trace points... [0.049s] Sorting trace points... [1.257s] Computing alignments... [36.116s] Deallocating buffers... [0.015s] Loading trace points... [0.114s] Sorting trace points... [1.06s] Computing alignments... [34.9s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [0.977s] Computing alignments... [34.523s] Deallocating buffers... [0.024s] Loading trace points... [0s] [601.151s] Deallocating reference... [0.061s] Loading reference sequences... [0.081s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [3147.42s] [3147.42s] Deallocating queries... [0.061s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.177s] [4.076s] Closing the database... [0s] Cleaning up... [0s] Total time = 35833.2s Reported 2950306381 pairwise alignments, 2950306381 HSPs. 5432664 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-15.trimmed.R2.fastq.gz complete: CH03-15.trimmed.R2.blastx.meganized.daa Now MEGANizing CH03-15.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH03-15.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (392.3s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,468.5s) Total reads: 5,432,664 With hits: 5,432,664 Alignments: 2,076,222,368 Assig. Taxonomy: 2,129,499 Assig. SEED: 105,642 Assig. EGGNOG: 27,316 Assig. GTDB: 234,042 Assig. EC: 397,839 Assig. INTERPRO2GO: 955,641 MinSupport set to: 2716 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.6s) Min-supp. changes: 6,075 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.2s) Min-supp. changes: 4,667 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.7s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 162 Class. SEED: 508 Class. EGGNOG: 1,660 Class. GTDB: 44 Class. EC: 2,446 Class. INTERPRO2GO: 8,765 Total time: 4,889s Peak memory: 37 of 195.3G MEGANization of CH03-15.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-33.trimmed.R1.fastq.gz... bf324b1f369acada18cb8128c5674a71 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-33.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-33.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.287s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.669s] Opening the output file... [0s] Loading query sequences... [71.236s] Masking queries... [18.653s] Algorithm: Double-indexed Building query histograms... [16.254s] Loading reference sequences... [32.334s] Masking reference... [32.033s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.212s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.435s] Building query seed array... [1.713s] Computing hash join... [5.522s] Masking low complexity seeds... [0.164s] Searching alignments... [283.889s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.917s] Building query seed array... [2.028s] Computing hash join... [4.721s] Masking low complexity seeds... [0.152s] Searching alignments... [121.749s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.182s] Building query seed array... [2.054s] Computing hash join... [5.398s] Masking low complexity seeds... [0.165s] Searching alignments... [96.733s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.051s] Building query seed array... [1.706s] Computing hash join... [5.456s] Masking low complexity seeds... [0.18s] Searching alignments... [92.177s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.764s] Building query seed array... [1.528s] Computing hash join... [5.022s] Masking low complexity seeds... [0.147s] Searching alignments... [128.391s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.64s] Building query seed array... [1.795s] Computing hash join... [4.868s] Masking low complexity seeds... [0.151s] Searching alignments... [102.087s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.408s] Building query seed array... [1.88s] Computing hash join... [5.221s] Masking low complexity seeds... [0.157s] Searching alignments... [78.136s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.983s] Building query seed array... [1.577s] Computing hash join... [5.331s] Masking low complexity seeds... [0.156s] Searching alignments... [79.144s] Deallocating memory... [0s] Deallocating buffers... [0.286s] Clearing query masking... [1.261s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.711s] Sorting trace points... [1.363s] Computing alignments... [38.311s] Deallocating buffers... [0.026s] Loading trace points... [0.048s] Sorting trace points... [1.225s] Computing alignments... [38.758s] Deallocating buffers... [0.03s] Loading trace points... [0.065s] Sorting trace points... [1.31s] Computing alignments... [38.637s] Deallocating buffers... [0.028s] Loading trace points... [0.055s] Sorting trace points... [1.054s] Computing alignments... [40.909s] Deallocating buffers... [0.032s] Loading trace points... [0.051s] Sorting trace points... [1.309s] Computing alignments... [38.15s] Deallocating buffers... [0.015s] Loading trace points... [0.044s] Sorting trace points... [0.948s] Computing alignments... [39.527s] Deallocating buffers... [0.026s] Loading trace points... [0.072s] Sorting trace points... [1.296s] Computing alignments... [39.753s] Deallocating buffers... [0.028s] Loading trace points... [0.099s] Sorting trace points... [1.372s] Computing alignments... [40.106s] Deallocating buffers... [0.024s] Loading trace points... [0.062s] Sorting trace points... [1.295s] Computing alignments... [38.13s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.277s] Computing alignments... [39.623s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.328s] Computing alignments... [40.456s] Deallocating buffers... [0.024s] Loading trace points... [0.05s] Sorting trace points... [1.404s] Computing alignments... [41.053s] Deallocating buffers... [0.026s] Loading trace points... [0.043s] Sorting trace points... [1.328s] Computing alignments... [38.535s] Deallocating buffers... [0.027s] Loading trace points... [0.075s] Sorting trace points... [1.318s] Computing alignments... [38.544s] Deallocating buffers... [0.028s] Loading trace points... [0.059s] Sorting trace points... [1.166s] Computing alignments... [38.38s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.343s] Computing alignments... [39.526s] Deallocating buffers... [0.028s] Loading trace points... [0s] [657.796s] Deallocating reference... [0.074s] Loading reference sequences... [31.98s] Masking reference... [30.913s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.548s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.373s] Building query seed array... [1.723s] Computing hash join... [5.344s] Masking low complexity seeds... [0.165s] Searching alignments... [279.582s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.666s] Building query seed array... [2.168s] Computing hash join... [5.37s] Masking low complexity seeds... [0.162s] Searching alignments... [121.158s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.205s] Building query seed array... [2.081s] Computing hash join... [4.855s] Masking low complexity seeds... [0.179s] Searching alignments... [90.879s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.14s] Building query seed array... [1.758s] Computing hash join... [4.763s] Masking low complexity seeds... [0.157s] Searching alignments... [92.43s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.908s] Building query seed array... [1.601s] Computing hash join... [4.611s] Masking low complexity seeds... [0.152s] Searching alignments... [124.764s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.995s] Building query seed array... [1.806s] Computing hash join... [4.882s] Masking low complexity seeds... [0.166s] Searching alignments... [100.167s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.407s] Building query seed array... [1.963s] Computing hash join... [4.875s] Masking low complexity seeds... [0.169s] Searching alignments... [77.409s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.783s] Building query seed array... [1.702s] Computing hash join... [4.579s] Masking low complexity seeds... [0.15s] Searching alignments... [80.145s] Deallocating memory... [0s] Deallocating buffers... [0.547s] Clearing query masking... [1.29s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.012s] Sorting trace points... [1.336s] Computing alignments... [38.74s] Deallocating buffers... [0.064s] Loading trace points... [0.066s] Sorting trace points... [1.241s] Computing alignments... [39.19s] Deallocating buffers... [0.037s] Loading trace points... [0.045s] Sorting trace points... [1.18s] Computing alignments... [40.532s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.084s] Computing alignments... [42.391s] Deallocating buffers... [0.058s] Loading trace points... [0.859s] Sorting trace points... [1.341s] Computing alignments... [39.547s] Deallocating buffers... [0.05s] Loading trace points... [0.068s] Sorting trace points... [1.075s] Computing alignments... [41.322s] Deallocating buffers... [0.043s] Loading trace points... [0.051s] Sorting trace points... [0.998s] Computing alignments... [41.529s] Deallocating buffers... [0.048s] Loading trace points... [0.09s] Sorting trace points... [1.174s] Computing alignments... [41.652s] Deallocating buffers... [0.046s] Loading trace points... [0.066s] Sorting trace points... [1.318s] Computing alignments... [39.323s] Deallocating buffers... [0.041s] Loading trace points... [0.095s] Sorting trace points... [1.274s] Computing alignments... [40.557s] Deallocating buffers... [0.046s] Loading trace points... [0.057s] Sorting trace points... [1.066s] Computing alignments... [41.695s] Deallocating buffers... [0.041s] Loading trace points... [0.086s] Sorting trace points... [1.381s] Computing alignments... [42.903s] Deallocating buffers... [0.038s] Loading trace points... [0.112s] Sorting trace points... [1.188s] Computing alignments... [40.774s] Deallocating buffers... [0.05s] Loading trace points... [0.065s] Sorting trace points... [1.322s] Computing alignments... [39.564s] Deallocating buffers... [0.044s] Loading trace points... [0.064s] Sorting trace points... [1.328s] Computing alignments... [39.542s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.311s] Computing alignments... [41.241s] Deallocating buffers... [0.048s] Loading trace points... [0s] [679.696s] Deallocating reference... [0.08s] Loading reference sequences... [29.026s] Masking reference... [30.877s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.658s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.374s] Building query seed array... [1.688s] Computing hash join... [5.425s] Masking low complexity seeds... [0.168s] Searching alignments... [278.796s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.472s] Building query seed array... [2.108s] Computing hash join... [5.34s] Masking low complexity seeds... [0.163s] Searching alignments... [123.054s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.801s] Building query seed array... [2.211s] Computing hash join... [4.822s] Masking low complexity seeds... [0.16s] Searching alignments... [94.945s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.256s] Building query seed array... [1.775s] Computing hash join... [4.724s] Masking low complexity seeds... [0.164s] Searching alignments... [90.279s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.017s] Building query seed array... [1.647s] Computing hash join... [4.703s] Masking low complexity seeds... [0.154s] Searching alignments... [128.56s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.253s] Building query seed array... [1.942s] Computing hash join... [4.591s] Masking low complexity seeds... [0.15s] Searching alignments... [101.806s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.409s] Building query seed array... [1.968s] Computing hash join... [4.701s] Masking low complexity seeds... [0.154s] Searching alignments... [78.635s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.118s] Building query seed array... [1.647s] Computing hash join... [5.117s] Masking low complexity seeds... [0.153s] Searching alignments... [79.543s] Deallocating memory... [0s] Deallocating buffers... [0.442s] Clearing query masking... [1.127s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.93s] Sorting trace points... [1.362s] Computing alignments... [38.818s] Deallocating buffers... [0.042s] Loading trace points... [0.088s] Sorting trace points... [1.165s] Computing alignments... [39.279s] Deallocating buffers... [0.039s] Loading trace points... [0.037s] Sorting trace points... [1.312s] Computing alignments... [40.197s] Deallocating buffers... [0.039s] Loading trace points... [0.109s] Sorting trace points... [1.067s] Computing alignments... [41.87s] Deallocating buffers... [0.041s] Loading trace points... [0.061s] Sorting trace points... [1.281s] Computing alignments... [39.138s] Deallocating buffers... [0.05s] Loading trace points... [0.061s] Sorting trace points... [1.348s] Computing alignments... [40.731s] Deallocating buffers... [0.046s] Loading trace points... [0.053s] Sorting trace points... [1.166s] Computing alignments... [41.208s] Deallocating buffers... [0.058s] Loading trace points... [0.055s] Sorting trace points... [1.27s] Computing alignments... [41.491s] Deallocating buffers... [0.047s] Loading trace points... [0.058s] Sorting trace points... [1.312s] Computing alignments... [38.677s] Deallocating buffers... [0.043s] Loading trace points... [0.045s] Sorting trace points... [1.337s] Computing alignments... [41.179s] Deallocating buffers... [0.047s] Loading trace points... [0.057s] Sorting trace points... [1.351s] Computing alignments... [42.05s] Deallocating buffers... [0.032s] Loading trace points... [0.066s] Sorting trace points... [1.179s] Computing alignments... [42.543s] Deallocating buffers... [0.047s] Loading trace points... [0.06s] Sorting trace points... [1.337s] Computing alignments... [40.339s] Deallocating buffers... [0.044s] Loading trace points... [0.077s] Sorting trace points... [1.063s] Computing alignments... [39.462s] Deallocating buffers... [0.044s] Loading trace points... [0.063s] Sorting trace points... [1.06s] Computing alignments... [39.358s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.293s] Computing alignments... [41.121s] Deallocating buffers... [0.046s] Loading trace points... [0s] [676.001s] Deallocating reference... [0.087s] Loading reference sequences... [30.314s] Masking reference... [30.945s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.337s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.226s] Building query seed array... [1.776s] Computing hash join... [5.253s] Masking low complexity seeds... [0.158s] Searching alignments... [284.99s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.245s] Building query seed array... [2.034s] Computing hash join... [5.446s] Masking low complexity seeds... [0.203s] Searching alignments... [119.692s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.676s] Building query seed array... [2.135s] Computing hash join... [4.944s] Masking low complexity seeds... [0.156s] Searching alignments... [94.584s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.681s] Building query seed array... [1.699s] Computing hash join... [4.897s] Masking low complexity seeds... [0.167s] Searching alignments... [91.762s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.091s] Building query seed array... [1.695s] Computing hash join... [4.748s] Masking low complexity seeds... [0.161s] Searching alignments... [125.445s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.891s] Building query seed array... [1.907s] Computing hash join... [4.879s] Masking low complexity seeds... [0.157s] Searching alignments... [104.111s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.388s] Building query seed array... [1.955s] Computing hash join... [4.619s] Masking low complexity seeds... [0.166s] Searching alignments... [78.38s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.58s] Building query seed array... [1.649s] Computing hash join... [5.168s] Masking low complexity seeds... [0.177s] Searching alignments... [81.341s] Deallocating memory... [0s] Deallocating buffers... [0.423s] Clearing query masking... [1.154s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.207s] Sorting trace points... [1.247s] Computing alignments... [38.383s] Deallocating buffers... [0.028s] Loading trace points... [0.05s] Sorting trace points... [1.154s] Computing alignments... [38.931s] Deallocating buffers... [0.025s] Loading trace points... [0.067s] Sorting trace points... [1.29s] Computing alignments... [39.511s] Deallocating buffers... [0.033s] Loading trace points... [0.062s] Sorting trace points... [1.403s] Computing alignments... [41.738s] Deallocating buffers... [0.026s] Loading trace points... [0.116s] Sorting trace points... [1.059s] Computing alignments... [38.826s] Deallocating buffers... [0.018s] Loading trace points... [0.039s] Sorting trace points... [1.286s] Computing alignments... [40.407s] Deallocating buffers... [0.025s] Loading trace points... [0.088s] Sorting trace points... [1.342s] Computing alignments... [41.003s] Deallocating buffers... [0.024s] Loading trace points... [0.069s] Sorting trace points... [1.375s] Computing alignments... [40.864s] Deallocating buffers... [0.027s] Loading trace points... [0.081s] Sorting trace points... [1.195s] Computing alignments... [38.42s] Deallocating buffers... [0.024s] Loading trace points... [0.069s] Sorting trace points... [1.008s] Computing alignments... [40.334s] Deallocating buffers... [0.039s] Loading trace points... [0.09s] Sorting trace points... [1.325s] Computing alignments... [40.932s] Deallocating buffers... [0.028s] Loading trace points... [0.052s] Sorting trace points... [1.377s] Computing alignments... [42.078s] Deallocating buffers... [0.028s] Loading trace points... [0.056s] Sorting trace points... [1.065s] Computing alignments... [39.94s] Deallocating buffers... [0.034s] Loading trace points... [0.055s] Sorting trace points... [1.325s] Computing alignments... [38.87s] Deallocating buffers... [0.035s] Loading trace points... [0.093s] Sorting trace points... [1.347s] Computing alignments... [38.719s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.123s] Computing alignments... [40.377s] Deallocating buffers... [0.037s] Loading trace points... [0s] [669.057s] Deallocating reference... [0.081s] Loading reference sequences... [256.517s] Masking reference... [31.256s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.026s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.074s] Building query seed array... [1.713s] Computing hash join... [5.379s] Masking low complexity seeds... [0.168s] Searching alignments... [278.762s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.223s] Building query seed array... [2.214s] Computing hash join... [5.236s] Masking low complexity seeds... [0.161s] Searching alignments... [120.752s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.111s] Building query seed array... [2.107s] Computing hash join... [4.877s] Masking low complexity seeds... [0.161s] Searching alignments... [96.62s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.174s] Building query seed array... [1.825s] Computing hash join... [4.784s] Masking low complexity seeds... [0.164s] Searching alignments... [93.796s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.106s] Building query seed array... [1.588s] Computing hash join... [5.068s] Masking low complexity seeds... [0.162s] Searching alignments... [127.451s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.42s] Building query seed array... [1.896s] Computing hash join... [4.818s] Masking low complexity seeds... [0.149s] Searching alignments... [102.166s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.353s] Building query seed array... [1.915s] Computing hash join... [5.057s] Masking low complexity seeds... [0.15s] Searching alignments... [78.766s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.942s] Building query seed array... [1.667s] Computing hash join... [4.561s] Masking low complexity seeds... [0.143s] Searching alignments... [79.416s] Deallocating memory... [0s] Deallocating buffers... [0.513s] Clearing query masking... [1.177s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.308s] Sorting trace points... [0.911s] Computing alignments... [40.484s] Deallocating buffers... [0.073s] Loading trace points... [0s] Sorting trace points... [0.984s] Computing alignments... [40.163s] Deallocating buffers... [0.043s] Loading trace points... [0.054s] Sorting trace points... [1.153s] Computing alignments... [41.063s] Deallocating buffers... [0.051s] Loading trace points... [0.069s] Sorting trace points... [1.186s] Computing alignments... [43.353s] Deallocating buffers... [0.063s] Loading trace points... [0.049s] Sorting trace points... [1.104s] Computing alignments... [40.568s] Deallocating buffers... [0.043s] Loading trace points... [0s] Sorting trace points... [1.237s] Computing alignments... [42.56s] Deallocating buffers... [0.058s] Loading trace points... [0.055s] Sorting trace points... [1.027s] Computing alignments... [42.535s] Deallocating buffers... [0.044s] Loading trace points... [0.062s] Sorting trace points... [1.023s] Computing alignments... [42.862s] Deallocating buffers... [0.056s] Loading trace points... [0.132s] Sorting trace points... [1.359s] Computing alignments... [40.467s] Deallocating buffers... [0.052s] Loading trace points... [0.089s] Sorting trace points... [1.078s] Computing alignments... [42.355s] Deallocating buffers... [0.048s] Loading trace points... [0.064s] Sorting trace points... [1.363s] Computing alignments... [43.122s] Deallocating buffers... [0.054s] Loading trace points... [0.001s] Sorting trace points... [1.034s] Computing alignments... [44.266s] Deallocating buffers... [0.047s] Loading trace points... [0.001s] Sorting trace points... [1.222s] Computing alignments... [41.915s] Deallocating buffers... [0.058s] Loading trace points... [0.064s] Sorting trace points... [1.292s] Computing alignments... [40.72s] Deallocating buffers... [0.041s] Loading trace points... [0.098s] Sorting trace points... [1.343s] Computing alignments... [40.806s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [1.385s] Computing alignments... [43.144s] Deallocating buffers... [0.046s] Loading trace points... [0s] [698.106s] Deallocating reference... [0.083s] Loading reference sequences... [258.351s] Masking reference... [31.179s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.636s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.273s] Building query seed array... [1.625s] Computing hash join... [4.866s] Masking low complexity seeds... [0.162s] Searching alignments... [282.432s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.463s] Building query seed array... [1.901s] Computing hash join... [5.156s] Masking low complexity seeds... [0.156s] Searching alignments... [122.271s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.01s] Building query seed array... [2.069s] Computing hash join... [5.072s] Masking low complexity seeds... [0.159s] Searching alignments... [92.241s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.013s] Building query seed array... [1.676s] Computing hash join... [5.244s] Masking low complexity seeds... [0.166s] Searching alignments... [91.748s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.93s] Building query seed array... [1.503s] Computing hash join... [5.205s] Masking low complexity seeds... [0.156s] Searching alignments... [123.996s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.105s] Building query seed array... [1.7s] Computing hash join... [4.972s] Masking low complexity seeds... [0.159s] Searching alignments... [103.324s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.962s] Building query seed array... [1.811s] Computing hash join... [4.786s] Masking low complexity seeds... [0.15s] Searching alignments... [77.619s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.056s] Building query seed array... [1.563s] Computing hash join... [4.947s] Masking low complexity seeds... [0.16s] Searching alignments... [79.968s] Deallocating memory... [0s] Deallocating buffers... [0.16s] Clearing query masking... [1.162s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.063s] Sorting trace points... [1.356s] Computing alignments... [38.669s] Deallocating buffers... [0.023s] Loading trace points... [0.081s] Sorting trace points... [1.309s] Computing alignments... [39.546s] Deallocating buffers... [0.023s] Loading trace points... [0.061s] Sorting trace points... [1.316s] Computing alignments... [40.406s] Deallocating buffers... [0.027s] Loading trace points... [0.063s] Sorting trace points... [1.126s] Computing alignments... [42.439s] Deallocating buffers... [0.03s] Loading trace points... [0.082s] Sorting trace points... [1.29s] Computing alignments... [39.222s] Deallocating buffers... [0.023s] Loading trace points... [0.066s] Sorting trace points... [1.308s] Computing alignments... [40.616s] Deallocating buffers... [0.023s] Loading trace points... [0.071s] Sorting trace points... [1.106s] Computing alignments... [41.286s] Deallocating buffers... [0.025s] Loading trace points... [0.044s] Sorting trace points... [1.302s] Computing alignments... [42.135s] Deallocating buffers... [0.025s] Loading trace points... [0.077s] Sorting trace points... [1.345s] Computing alignments... [39.508s] Deallocating buffers... [0.023s] Loading trace points... [0.081s] Sorting trace points... [1.345s] Computing alignments... [40.915s] Deallocating buffers... [0.024s] Loading trace points... [0.063s] Sorting trace points... [1.188s] Computing alignments... [41.881s] Deallocating buffers... [0.025s] Loading trace points... [0.079s] Sorting trace points... [1.155s] Computing alignments... [42.483s] Deallocating buffers... [0.028s] Loading trace points... [0.065s] Sorting trace points... [1.317s] Computing alignments... [40.322s] Deallocating buffers... [0.031s] Loading trace points... [0.065s] Sorting trace points... [1.39s] Computing alignments... [39.562s] Deallocating buffers... [0.033s] Loading trace points... [0.071s] Sorting trace points... [1.224s] Computing alignments... [39.633s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.323s] Computing alignments... [41.213s] Deallocating buffers... [0.024s] Loading trace points... [0s] [678.774s] Deallocating reference... [0.092s] Loading reference sequences... [30.707s] Masking reference... [30.872s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.089s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.488s] Building query seed array... [1.707s] Computing hash join... [5.722s] Masking low complexity seeds... [0.211s] Searching alignments... [282.708s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.576s] Building query seed array... [2.045s] Computing hash join... [4.87s] Masking low complexity seeds... [0.163s] Searching alignments... [117.95s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.91s] Building query seed array... [2.15s] Computing hash join... [4.769s] Masking low complexity seeds... [0.157s] Searching alignments... [92.485s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.501s] Building query seed array... [1.787s] Computing hash join... [4.745s] Masking low complexity seeds... [0.154s] Searching alignments... [90.835s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.39s] Building query seed array... [1.596s] Computing hash join... [5.142s] Masking low complexity seeds... [0.169s] Searching alignments... [124.1s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.2s] Building query seed array... [1.811s] Computing hash join... [4.67s] Masking low complexity seeds... [0.16s] Searching alignments... [101.531s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.775s] Building query seed array... [1.915s] Computing hash join... [4.719s] Masking low complexity seeds... [0.146s] Searching alignments... [77.921s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.989s] Building query seed array... [1.597s] Computing hash join... [5.394s] Masking low complexity seeds... [0.162s] Searching alignments... [78.939s] Deallocating memory... [0s] Deallocating buffers... [0.887s] Clearing query masking... [1.198s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.497s] Sorting trace points... [1.219s] Computing alignments... [38.951s] Deallocating buffers... [0.026s] Loading trace points... [0.074s] Sorting trace points... [1.343s] Computing alignments... [39.63s] Deallocating buffers... [0.026s] Loading trace points... [0.06s] Sorting trace points... [1.211s] Computing alignments... [40.423s] Deallocating buffers... [0.024s] Loading trace points... [0.076s] Sorting trace points... [1.208s] Computing alignments... [42.495s] Deallocating buffers... [0.029s] Loading trace points... [0.085s] Sorting trace points... [0.971s] Computing alignments... [39.342s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.147s] Computing alignments... [40.975s] Deallocating buffers... [0.024s] Loading trace points... [0.063s] Sorting trace points... [1.187s] Computing alignments... [41.463s] Deallocating buffers... [0.028s] Loading trace points... [0.052s] Sorting trace points... [1.038s] Computing alignments... [42.295s] Deallocating buffers... [0.018s] Loading trace points... [0.072s] Sorting trace points... [1.11s] Computing alignments... [39.624s] Deallocating buffers... [0.026s] Loading trace points... [0.088s] Sorting trace points... [1.046s] Computing alignments... [41.428s] Deallocating buffers... [0.025s] Loading trace points... [0.74s] Sorting trace points... [1.35s] Computing alignments... [42.259s] Deallocating buffers... [0.025s] Loading trace points... [0.084s] Sorting trace points... [1.333s] Computing alignments... [42.816s] Deallocating buffers... [0.03s] Loading trace points... [0.064s] Sorting trace points... [1.347s] Computing alignments... [40.562s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [1.294s] Computing alignments... [39.712s] Deallocating buffers... [0.025s] Loading trace points... [0.085s] Sorting trace points... [1.342s] Computing alignments... [39.983s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.302s] Computing alignments... [41.467s] Deallocating buffers... [0.024s] Loading trace points... [0s] [682.543s] Deallocating reference... [0.101s] Loading reference sequences... [30.638s] Masking reference... [30.928s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.835s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.439s] Building query seed array... [1.706s] Computing hash join... [5.56s] Masking low complexity seeds... [0.167s] Searching alignments... [278.15s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.883s] Building query seed array... [2.259s] Computing hash join... [5.139s] Masking low complexity seeds... [0.165s] Searching alignments... [120.107s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.674s] Building query seed array... [2.217s] Computing hash join... [4.995s] Masking low complexity seeds... [0.2s] Searching alignments... [95.163s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.461s] Building query seed array... [1.785s] Computing hash join... [5.186s] Masking low complexity seeds... [0.172s] Searching alignments... [90.797s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.055s] Building query seed array... [1.665s] Computing hash join... [4.824s] Masking low complexity seeds... [0.165s] Searching alignments... [124.014s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.274s] Building query seed array... [1.933s] Computing hash join... [4.774s] Masking low complexity seeds... [0.147s] Searching alignments... [102.95s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.419s] Building query seed array... [1.923s] Computing hash join... [5.314s] Masking low complexity seeds... [0.163s] Searching alignments... [78.646s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.111s] Building query seed array... [1.693s] Computing hash join... [4.777s] Masking low complexity seeds... [0.173s] Searching alignments... [78.773s] Deallocating memory... [0s] Deallocating buffers... [1.038s] Clearing query masking... [1.174s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.11s] Sorting trace points... [1.292s] Computing alignments... [37.84s] Deallocating buffers... [0.025s] Loading trace points... [0.064s] Sorting trace points... [1.296s] Computing alignments... [38.41s] Deallocating buffers... [0.027s] Loading trace points... [0.049s] Sorting trace points... [1.299s] Computing alignments... [39.098s] Deallocating buffers... [0.027s] Loading trace points... [0.071s] Sorting trace points... [1.43s] Computing alignments... [41.003s] Deallocating buffers... [0.027s] Loading trace points... [0.068s] Sorting trace points... [1.02s] Computing alignments... [38.128s] Deallocating buffers... [0.017s] Loading trace points... [0.055s] Sorting trace points... [1.119s] Computing alignments... [39.744s] Deallocating buffers... [0.026s] Loading trace points... [0.05s] Sorting trace points... [1.321s] Computing alignments... [40.4s] Deallocating buffers... [0.023s] Loading trace points... [0.046s] Sorting trace points... [1.106s] Computing alignments... [40.293s] Deallocating buffers... [0.027s] Loading trace points... [0.054s] Sorting trace points... [1.305s] Computing alignments... [38.655s] Deallocating buffers... [0.023s] Loading trace points... [0.071s] Sorting trace points... [1.038s] Computing alignments... [39.756s] Deallocating buffers... [0.025s] Loading trace points... [0.047s] Sorting trace points... [1.294s] Computing alignments... [40.411s] Deallocating buffers... [0.028s] Loading trace points... [0.102s] Sorting trace points... [1.375s] Computing alignments... [41.695s] Deallocating buffers... [0.026s] Loading trace points... [0.066s] Sorting trace points... [1.328s] Computing alignments... [39.569s] Deallocating buffers... [0.028s] Loading trace points... [0.049s] Sorting trace points... [1.056s] Computing alignments... [38.446s] Deallocating buffers... [0.031s] Loading trace points... [0.064s] Sorting trace points... [1.279s] Computing alignments... [38.426s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.331s] Computing alignments... [40.322s] Deallocating buffers... [0.024s] Loading trace points... [0s] [660.575s] Deallocating reference... [0.094s] Loading reference sequences... [31.154s] Masking reference... [31.265s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.004s] Building reference histograms... [32.158s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.467s] Building query seed array... [1.776s] Computing hash join... [5.298s] Masking low complexity seeds... [0.167s] Searching alignments... [282.711s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.571s] Building query seed array... [2.274s] Computing hash join... [5.152s] Masking low complexity seeds... [0.184s] Searching alignments... [120.195s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.75s] Building query seed array... [2.204s] Computing hash join... [5.279s] Masking low complexity seeds... [0.159s] Searching alignments... [94.791s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.16s] Building query seed array... [1.779s] Computing hash join... [5.123s] Masking low complexity seeds... [0.157s] Searching alignments... [92.694s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.797s] Building query seed array... [1.602s] Computing hash join... [5.301s] Masking low complexity seeds... [0.181s] Searching alignments... [127.289s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.636s] Building query seed array... [1.852s] Computing hash join... [5.112s] Masking low complexity seeds... [0.153s] Searching alignments... [102.33s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.046s] Building query seed array... [1.897s] Computing hash join... [4.79s] Masking low complexity seeds... [0.16s] Searching alignments... [79.396s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.134s] Building query seed array... [1.652s] Computing hash join... [5.307s] Masking low complexity seeds... [0.155s] Searching alignments... [80.765s] Deallocating memory... [0s] Deallocating buffers... [0.631s] Clearing query masking... [1.154s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.03s] Sorting trace points... [1.334s] Computing alignments... [38.485s] Deallocating buffers... [0.051s] Loading trace points... [0.077s] Sorting trace points... [1.309s] Computing alignments... [38.363s] Deallocating buffers... [0.043s] Loading trace points... [0.049s] Sorting trace points... [1.116s] Computing alignments... [39.79s] Deallocating buffers... [0.051s] Loading trace points... [0.105s] Sorting trace points... [1.222s] Computing alignments... [41.924s] Deallocating buffers... [0.055s] Loading trace points... [0.072s] Sorting trace points... [1.304s] Computing alignments... [38.387s] Deallocating buffers... [0.033s] Loading trace points... [0.067s] Sorting trace points... [1.185s] Computing alignments... [40.393s] Deallocating buffers... [0.05s] Loading trace points... [0.055s] Sorting trace points... [1.065s] Computing alignments... [40.543s] Deallocating buffers... [0.033s] Loading trace points... [0.08s] Sorting trace points... [1.384s] Computing alignments... [40.679s] Deallocating buffers... [0.04s] Loading trace points... [0.073s] Sorting trace points... [1.297s] Computing alignments... [38.57s] Deallocating buffers... [0.041s] Loading trace points... [0.091s] Sorting trace points... [1.378s] Computing alignments... [40.232s] Deallocating buffers... [0.051s] Loading trace points... [0.057s] Sorting trace points... [1.183s] Computing alignments... [41.189s] Deallocating buffers... [0.051s] Loading trace points... [0.076s] Sorting trace points... [1.061s] Computing alignments... [42.119s] Deallocating buffers... [0.048s] Loading trace points... [0.062s] Sorting trace points... [1.174s] Computing alignments... [39.848s] Deallocating buffers... [0.047s] Loading trace points... [0.051s] Sorting trace points... [1.337s] Computing alignments... [38.987s] Deallocating buffers... [0.042s] Loading trace points... [0.064s] Sorting trace points... [1.329s] Computing alignments... [38.682s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [1.342s] Computing alignments... [40.827s] Deallocating buffers... [0.047s] Loading trace points... [0s] [668.082s] Deallocating reference... [0.097s] Loading reference sequences... [28.984s] Masking reference... [30.902s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [32.849s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.217s] Building query seed array... [1.745s] Computing hash join... [5.758s] Masking low complexity seeds... [0.166s] Searching alignments... [283.056s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.917s] Building query seed array... [2.061s] Computing hash join... [5.595s] Masking low complexity seeds... [0.174s] Searching alignments... [118.365s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.188s] Building query seed array... [2.154s] Computing hash join... [5.403s] Masking low complexity seeds... [0.173s] Searching alignments... [93.208s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.408s] Building query seed array... [1.737s] Computing hash join... [5.402s] Masking low complexity seeds... [0.202s] Searching alignments... [90.04s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.348s] Building query seed array... [1.548s] Computing hash join... [4.722s] Masking low complexity seeds... [0.155s] Searching alignments... [127.552s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.878s] Building query seed array... [1.806s] Computing hash join... [5.013s] Masking low complexity seeds... [0.157s] Searching alignments... [101.11s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.405s] Building query seed array... [1.898s] Computing hash join... [5.681s] Masking low complexity seeds... [0.153s] Searching alignments... [77.849s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.081s] Building query seed array... [1.675s] Computing hash join... [5.416s] Masking low complexity seeds... [0.18s] Searching alignments... [78.47s] Deallocating memory... [0s] Deallocating buffers... [1.207s] Clearing query masking... [1.175s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.075s] Sorting trace points... [1.344s] Computing alignments... [35.049s] Deallocating buffers... [0.023s] Loading trace points... [0.069s] Sorting trace points... [0.972s] Computing alignments... [36.285s] Deallocating buffers... [0.025s] Loading trace points... [0.074s] Sorting trace points... [1.386s] Computing alignments... [36.578s] Deallocating buffers... [0.032s] Loading trace points... [0.087s] Sorting trace points... [1.372s] Computing alignments... [38.289s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [0.966s] Computing alignments... [35.503s] Deallocating buffers... [0.018s] Loading trace points... [0.067s] Sorting trace points... [1.038s] Computing alignments... [37.114s] Deallocating buffers... [0.017s] Loading trace points... [0.043s] Sorting trace points... [1.367s] Computing alignments... [37.196s] Deallocating buffers... [0.027s] Loading trace points... [0.052s] Sorting trace points... [1.373s] Computing alignments... [37.622s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.167s] Computing alignments... [35.961s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [1.283s] Computing alignments... [37.039s] Deallocating buffers... [0.021s] Loading trace points... [0.081s] Sorting trace points... [1.315s] Computing alignments... [37.434s] Deallocating buffers... [0.025s] Loading trace points... [0.083s] Sorting trace points... [1.038s] Computing alignments... [38.828s] Deallocating buffers... [0.03s] Loading trace points... [0.078s] Sorting trace points... [0.99s] Computing alignments... [36.809s] Deallocating buffers... [0.018s] Loading trace points... [0.057s] Sorting trace points... [1.335s] Computing alignments... [36.251s] Deallocating buffers... [0.024s] Loading trace points... [0.08s] Sorting trace points... [1.029s] Computing alignments... [36.418s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.337s] Computing alignments... [37.759s] Deallocating buffers... [0.024s] Loading trace points... [0s] [617.976s] Deallocating reference... [0.066s] Loading reference sequences... [30.776s] Masking reference... [30.88s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [32.608s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.944s] Building query seed array... [1.726s] Computing hash join... [5.212s] Masking low complexity seeds... [0.162s] Searching alignments... [282.238s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.373s] Building query seed array... [2.187s] Computing hash join... [5.514s] Masking low complexity seeds... [0.186s] Searching alignments... [118.551s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.787s] Building query seed array... [2.222s] Computing hash join... [5.042s] Masking low complexity seeds... [0.159s] Searching alignments... [95.259s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.103s] Building query seed array... [1.763s] Computing hash join... [4.87s] Masking low complexity seeds... [0.178s] Searching alignments... [92.149s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.863s] Building query seed array... [1.677s] Computing hash join... [4.77s] Masking low complexity seeds... [0.146s] Searching alignments... [127.755s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.428s] Building query seed array... [1.943s] Computing hash join... [4.712s] Masking low complexity seeds... [0.17s] Searching alignments... [105.134s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.6s] Building query seed array... [1.997s] Computing hash join... [4.636s] Masking low complexity seeds... [0.147s] Searching alignments... [78.424s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.987s] Building query seed array... [1.746s] Computing hash join... [5.233s] Masking low complexity seeds... [0.159s] Searching alignments... [80.051s] Deallocating memory... [0s] Deallocating buffers... [0.7s] Clearing query masking... [1.141s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.03s] Sorting trace points... [1.241s] Computing alignments... [41.261s] Deallocating buffers... [0.081s] Loading trace points... [0.081s] Sorting trace points... [0.976s] Computing alignments... [42.126s] Deallocating buffers... [0.047s] Loading trace points... [0.057s] Sorting trace points... [1.308s] Computing alignments... [42.339s] Deallocating buffers... [0.054s] Loading trace points... [0.043s] Sorting trace points... [1.129s] Computing alignments... [44.709s] Deallocating buffers... [0.065s] Loading trace points... [0.048s] Sorting trace points... [1.303s] Computing alignments... [41.538s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [0.988s] Computing alignments... [43.489s] Deallocating buffers... [0.063s] Loading trace points... [0.074s] Sorting trace points... [1.048s] Computing alignments... [43.394s] Deallocating buffers... [0.059s] Loading trace points... [0.082s] Sorting trace points... [1.057s] Computing alignments... [44.277s] Deallocating buffers... [0.059s] Loading trace points... [0.085s] Sorting trace points... [1.102s] Computing alignments... [41.539s] Deallocating buffers... [0.054s] Loading trace points... [0.07s] Sorting trace points... [1.352s] Computing alignments... [43.666s] Deallocating buffers... [0.063s] Loading trace points... [0.067s] Sorting trace points... [1.069s] Computing alignments... [44.332s] Deallocating buffers... [0.058s] Loading trace points... [0.001s] Sorting trace points... [1.073s] Computing alignments... [45.275s] Deallocating buffers... [0.059s] Loading trace points... [0.001s] Sorting trace points... [1.388s] Computing alignments... [42.365s] Deallocating buffers... [0.052s] Loading trace points... [0.074s] Sorting trace points... [1.038s] Computing alignments... [41.591s] Deallocating buffers... [0.055s] Loading trace points... [0.079s] Sorting trace points... [1.107s] Computing alignments... [41.593s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [1.175s] Computing alignments... [43.821s] Deallocating buffers... [0.058s] Loading trace points... [0s] [714.608s] Deallocating reference... [0.066s] Loading reference sequences... [248.689s] Masking reference... [30.877s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [32.421s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.213s] Building query seed array... [1.69s] Computing hash join... [5.376s] Masking low complexity seeds... [0.169s] Searching alignments... [278.467s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.347s] Building query seed array... [2.117s] Computing hash join... [5.452s] Masking low complexity seeds... [0.188s] Searching alignments... [121.753s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.863s] Building query seed array... [2.224s] Computing hash join... [4.933s] Masking low complexity seeds... [0.2s] Searching alignments... [94.594s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.35s] Building query seed array... [1.769s] Computing hash join... [4.766s] Masking low complexity seeds... [0.165s] Searching alignments... [90.835s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.38s] Building query seed array... [1.638s] Computing hash join... [4.762s] Masking low complexity seeds... [0.147s] Searching alignments... [130.039s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.392s] Building query seed array... [1.992s] Computing hash join... [4.989s] Masking low complexity seeds... [0.149s] Searching alignments... [101.062s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.051s] Building query seed array... [1.935s] Computing hash join... [5.377s] Masking low complexity seeds... [0.175s] Searching alignments... [78.997s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.932s] Building query seed array... [1.734s] Computing hash join... [4.677s] Masking low complexity seeds... [0.147s] Searching alignments... [78.998s] Deallocating memory... [0s] Deallocating buffers... [0.555s] Clearing query masking... [1.137s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.184s] Sorting trace points... [1.367s] Computing alignments... [40.634s] Deallocating buffers... [0.066s] Loading trace points... [0.074s] Sorting trace points... [1.341s] Computing alignments... [40.434s] Deallocating buffers... [0.043s] Loading trace points... [0.062s] Sorting trace points... [1.329s] Computing alignments... [41.77s] Deallocating buffers... [0.059s] Loading trace points... [0.061s] Sorting trace points... [1.071s] Computing alignments... [43.689s] Deallocating buffers... [0.062s] Loading trace points... [0.43s] Sorting trace points... [1.285s] Computing alignments... [40.556s] Deallocating buffers... [0.066s] Loading trace points... [0.05s] Sorting trace points... [1.003s] Computing alignments... [42.387s] Deallocating buffers... [0.065s] Loading trace points... [0.062s] Sorting trace points... [1.401s] Computing alignments... [42.869s] Deallocating buffers... [0.049s] Loading trace points... [0.061s] Sorting trace points... [1.368s] Computing alignments... [43.151s] Deallocating buffers... [0.049s] Loading trace points... [0.042s] Sorting trace points... [1.326s] Computing alignments... [40.298s] Deallocating buffers... [0.036s] Loading trace points... [0.001s] Sorting trace points... [1.373s] Computing alignments... [42.542s] Deallocating buffers... [0.057s] Loading trace points... [0.088s] Sorting trace points... [1.345s] Computing alignments... [43.102s] Deallocating buffers... [0.051s] Loading trace points... [0.075s] Sorting trace points... [1.078s] Computing alignments... [43.881s] Deallocating buffers... [0.044s] Loading trace points... [0.071s] Sorting trace points... [1.406s] Computing alignments... [41.699s] Deallocating buffers... [0.054s] Loading trace points... [0.093s] Sorting trace points... [1.336s] Computing alignments... [40.982s] Deallocating buffers... [0.054s] Loading trace points... [0.053s] Sorting trace points... [1.359s] Computing alignments... [40.854s] Deallocating buffers... [0.062s] Loading trace points... [0s] Sorting trace points... [1.324s] Computing alignments... [42.822s] Deallocating buffers... [0.064s] Loading trace points... [0s] [701.931s] Deallocating reference... [0.088s] Loading reference sequences... [31.28s] Masking reference... [30.896s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [32.4s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.322s] Building query seed array... [1.787s] Computing hash join... [5.333s] Masking low complexity seeds... [0.165s] Searching alignments... [284.789s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.733s] Building query seed array... [2.34s] Computing hash join... [5.474s] Masking low complexity seeds... [0.167s] Searching alignments... [118.111s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.48s] Building query seed array... [2.219s] Computing hash join... [4.974s] Masking low complexity seeds... [0.163s] Searching alignments... [94.165s] Deallocating memory... [0.004s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.43s] Building query seed array... [1.814s] Computing hash join... [5.301s] Masking low complexity seeds... [0.158s] Searching alignments... [91.178s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.962s] Building query seed array... [1.712s] Computing hash join... [4.623s] Masking low complexity seeds... [0.142s] Searching alignments... [127.042s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.448s] Building query seed array... [1.966s] Computing hash join... [4.845s] Masking low complexity seeds... [0.157s] Searching alignments... [102.979s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.798s] Building query seed array... [2.035s] Computing hash join... [4.873s] Masking low complexity seeds... [0.145s] Searching alignments... [77.781s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.2s] Building query seed array... [1.761s] Computing hash join... [4.677s] Masking low complexity seeds... [0.153s] Searching alignments... [79.107s] Deallocating memory... [0s] Deallocating buffers... [0.867s] Clearing query masking... [1.168s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.328s] Sorting trace points... [1.353s] Computing alignments... [37.914s] Deallocating buffers... [0.025s] Loading trace points... [0.099s] Sorting trace points... [0.99s] Computing alignments... [38.706s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [1.037s] Computing alignments... [39.483s] Deallocating buffers... [0.027s] Loading trace points... [0.123s] Sorting trace points... [1.329s] Computing alignments... [41.508s] Deallocating buffers... [0.027s] Loading trace points... [0.087s] Sorting trace points... [0.994s] Computing alignments... [38.684s] Deallocating buffers... [0.024s] Loading trace points... [0.084s] Sorting trace points... [1.269s] Computing alignments... [40.16s] Deallocating buffers... [0.029s] Loading trace points... [0.165s] Sorting trace points... [1.291s] Computing alignments... [40.542s] Deallocating buffers... [0.019s] Loading trace points... [0.899s] Sorting trace points... [1.348s] Computing alignments... [40.998s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [1.259s] Computing alignments... [38.835s] Deallocating buffers... [0.029s] Loading trace points... [0.079s] Sorting trace points... [1.048s] Computing alignments... [40.149s] Deallocating buffers... [0.018s] Loading trace points... [0.125s] Sorting trace points... [1.339s] Computing alignments... [41.047s] Deallocating buffers... [0.028s] Loading trace points... [0.072s] Sorting trace points... [1.324s] Computing alignments... [41.616s] Deallocating buffers... [0.025s] Loading trace points... [0.098s] Sorting trace points... [1.309s] Computing alignments... [39.392s] Deallocating buffers... [0.029s] Loading trace points... [0.067s] Sorting trace points... [1.327s] Computing alignments... [38.464s] Deallocating buffers... [0.028s] Loading trace points... [0.105s] Sorting trace points... [1.323s] Computing alignments... [38.743s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.304s] Computing alignments... [40.541s] Deallocating buffers... [0.029s] Loading trace points... [0s] [666.656s] Deallocating reference... [0.065s] Loading reference sequences... [27.552s] Masking reference... [25.023s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.004s] Building reference histograms... [26.433s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.197s] Building query seed array... [1.728s] Computing hash join... [3.929s] Masking low complexity seeds... [0.143s] Searching alignments... [226.076s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.265s] Building query seed array... [1.917s] Computing hash join... [3.986s] Masking low complexity seeds... [0.143s] Searching alignments... [97.069s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.802s] Building query seed array... [2.038s] Computing hash join... [3.98s] Masking low complexity seeds... [0.146s] Searching alignments... [76.34s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.254s] Building query seed array... [1.605s] Computing hash join... [3.956s] Masking low complexity seeds... [0.146s] Searching alignments... [73.28s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.294s] Building query seed array... [1.515s] Computing hash join... [3.861s] Masking low complexity seeds... [0.139s] Searching alignments... [104.382s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.721s] Building query seed array... [1.727s] Computing hash join... [3.82s] Masking low complexity seeds... [0.138s] Searching alignments... [83.949s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.834s] Building query seed array... [1.812s] Computing hash join... [3.849s] Masking low complexity seeds... [0.147s] Searching alignments... [62.667s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.401s] Building query seed array... [1.524s] Computing hash join... [3.943s] Masking low complexity seeds... [0.14s] Searching alignments... [65.999s] Deallocating memory... [0s] Deallocating buffers... [0.124s] Clearing query masking... [1.256s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.963s] Sorting trace points... [0.847s] Computing alignments... [29.484s] Deallocating buffers... [0.02s] Loading trace points... [0.04s] Sorting trace points... [1.058s] Computing alignments... [29.966s] Deallocating buffers... [0.019s] Loading trace points... [0.098s] Sorting trace points... [0.879s] Computing alignments... [30.669s] Deallocating buffers... [0.021s] Loading trace points... [0.08s] Sorting trace points... [1.048s] Computing alignments... [32.631s] Deallocating buffers... [0.021s] Loading trace points... [0.057s] Sorting trace points... [1.086s] Computing alignments... [30.348s] Deallocating buffers... [0.015s] Loading trace points... [0.104s] Sorting trace points... [0.782s] Computing alignments... [31.28s] Deallocating buffers... [0.021s] Loading trace points... [0.075s] Sorting trace points... [1.063s] Computing alignments... [31.62s] Deallocating buffers... [0.023s] Loading trace points... [0.069s] Sorting trace points... [1.113s] Computing alignments... [31.718s] Deallocating buffers... [0.02s] Loading trace points... [0.102s] Sorting trace points... [0.807s] Computing alignments... [29.98s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.118s] Computing alignments... [31.16s] Deallocating buffers... [0.019s] Loading trace points... [0.066s] Sorting trace points... [0.867s] Computing alignments... [31.721s] Deallocating buffers... [0.022s] Loading trace points... [0.037s] Sorting trace points... [1.174s] Computing alignments... [32.726s] Deallocating buffers... [0.021s] Loading trace points... [0.066s] Sorting trace points... [1.055s] Computing alignments... [30.831s] Deallocating buffers... [0.019s] Loading trace points... [0.09s] Sorting trace points... [1.026s] Computing alignments... [30.393s] Deallocating buffers... [0.022s] Loading trace points... [0.058s] Sorting trace points... [0.905s] Computing alignments... [30.199s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.079s] Computing alignments... [31.45s] Deallocating buffers... [0.023s] Loading trace points... [0s] [519.488s] Deallocating reference... [0.086s] Loading reference sequences... [0.084s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2654.77s] [2654.77s] Deallocating queries... [0.052s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.325s] [4.227s] Closing the database... [0s] Cleaning up... [0s] Total time = 29582.5s Reported 2507073732 pairwise alignments, 2507073732 HSPs. 4886982 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-33.trimmed.R1.fastq.gz complete: CH03-33.trimmed.R1.blastx.meganized.daa Now MEGANizing CH03-33.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH03-33.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (406.9s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,995.4s) Total reads: 4,886,982 With hits: 4,886,982 Alignments: 1,823,890,645 Assig. Taxonomy: 2,295,168 Assig. SEED: 85,650 Assig. EGGNOG: 34,245 Assig. GTDB: 203,978 Assig. EC: 367,018 Assig. INTERPRO2GO: 1,048,685 MinSupport set to: 2443 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 8,043 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (14.5s) Min-supp. changes: 6,301 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.4s) Binning reads Syncing 100% (0.2s) Class. Taxonomy: 178 Class. SEED: 565 Class. EGGNOG: 1,862 Class. GTDB: 57 Class. EC: 2,631 Class. INTERPRO2GO: 8,939 Total time: 4,433s Peak memory: 36.8 of 195.3G MEGANization of CH03-33.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-33.trimmed.R2.fastq.gz... 97ae3888c41772eb25da50765ad99dbb /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-33.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-33.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.341s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.753s] Opening the output file... [0s] Loading query sequences... [69.877s] Masking queries... [18.495s] Algorithm: Double-indexed Building query histograms... [14.971s] Loading reference sequences... [30.766s] Masking reference... [31.389s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.821s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.641s] Building query seed array... [1.734s] Computing hash join... [5.904s] Masking low complexity seeds... [0.163s] Searching alignments... [295.449s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.069s] Building query seed array... [2.264s] Computing hash join... [4.854s] Masking low complexity seeds... [0.169s] Searching alignments... [123.423s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.907s] Building query seed array... [2.192s] Computing hash join... [5.028s] Masking low complexity seeds... [0.157s] Searching alignments... [96.502s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.407s] Building query seed array... [1.788s] Computing hash join... [4.675s] Masking low complexity seeds... [0.155s] Searching alignments... [95.298s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.451s] Building query seed array... [1.652s] Computing hash join... [4.806s] Masking low complexity seeds... [0.142s] Searching alignments... [132.578s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.725s] Building query seed array... [2.007s] Computing hash join... [4.955s] Masking low complexity seeds... [0.153s] Searching alignments... [109.45s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.284s] Building query seed array... [1.973s] Computing hash join... [5.378s] Masking low complexity seeds... [0.152s] Searching alignments... [80.725s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.261s] Building query seed array... [1.746s] Computing hash join... [5.113s] Masking low complexity seeds... [0.153s] Searching alignments... [83.659s] Deallocating memory... [0s] Deallocating buffers... [1.158s] Clearing query masking... [1.14s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.15s] Sorting trace points... [1.351s] Computing alignments... [38.912s] Deallocating buffers... [0.02s] Loading trace points... [0.001s] Sorting trace points... [1.043s] Computing alignments... [40.34s] Deallocating buffers... [0.025s] Loading trace points... [0.051s] Sorting trace points... [1.339s] Computing alignments... [38.721s] Deallocating buffers... [0.023s] Loading trace points... [0.05s] Sorting trace points... [1.027s] Computing alignments... [41.79s] Deallocating buffers... [0.034s] Loading trace points... [0.065s] Sorting trace points... [1.052s] Computing alignments... [38.674s] Deallocating buffers... [0.021s] Loading trace points... [0.104s] Sorting trace points... [1.36s] Computing alignments... [40.256s] Deallocating buffers... [0.027s] Loading trace points... [0.058s] Sorting trace points... [1.342s] Computing alignments... [40.912s] Deallocating buffers... [0.024s] Loading trace points... [0.071s] Sorting trace points... [1.342s] Computing alignments... [41.228s] Deallocating buffers... [0.02s] Loading trace points... [0.076s] Sorting trace points... [1.318s] Computing alignments... [39.894s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.384s] Computing alignments... [40.811s] Deallocating buffers... [0.025s] Loading trace points... [0.074s] Sorting trace points... [1.423s] Computing alignments... [41.222s] Deallocating buffers... [0.025s] Loading trace points... [0.102s] Sorting trace points... [1.363s] Computing alignments... [40.163s] Deallocating buffers... [0.033s] Loading trace points... [0.385s] Sorting trace points... [1.343s] Computing alignments... [39.695s] Deallocating buffers... [0.023s] Loading trace points... [0.076s] Sorting trace points... [1.276s] Computing alignments... [39.861s] Deallocating buffers... [0.024s] Loading trace points... [0.054s] Sorting trace points... [1.347s] Computing alignments... [40.179s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.356s] Computing alignments... [38.919s] Deallocating buffers... [0.027s] Loading trace points... [0s] [671.189s] Deallocating reference... [0.078s] Loading reference sequences... [29.875s] Masking reference... [30.965s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.254s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.895s] Building query seed array... [1.652s] Computing hash join... [4.745s] Masking low complexity seeds... [0.151s] Searching alignments... [289.374s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.616s] Building query seed array... [1.903s] Computing hash join... [5.271s] Masking low complexity seeds... [0.156s] Searching alignments... [124.716s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.784s] Building query seed array... [2.023s] Computing hash join... [5.419s] Masking low complexity seeds... [0.162s] Searching alignments... [95.16s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.209s] Building query seed array... [1.632s] Computing hash join... [4.943s] Masking low complexity seeds... [0.158s] Searching alignments... [92.397s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.1s] Building query seed array... [1.484s] Computing hash join... [4.641s] Masking low complexity seeds... [0.14s] Searching alignments... [131.43s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.358s] Building query seed array... [1.728s] Computing hash join... [4.606s] Masking low complexity seeds... [0.145s] Searching alignments... [107.563s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.232s] Building query seed array... [1.807s] Computing hash join... [5.165s] Masking low complexity seeds... [0.152s] Searching alignments... [80.321s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.089s] Building query seed array... [1.465s] Computing hash join... [5.007s] Masking low complexity seeds... [0.145s] Searching alignments... [80.725s] Deallocating memory... [0s] Deallocating buffers... [0.167s] Clearing query masking... [1.207s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.11s] Sorting trace points... [1.301s] Computing alignments... [40.531s] Deallocating buffers... [0.053s] Loading trace points... [0.063s] Sorting trace points... [1.177s] Computing alignments... [41.96s] Deallocating buffers... [0.072s] Loading trace points... [0.003s] Sorting trace points... [1.246s] Computing alignments... [39.727s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [1.39s] Computing alignments... [43.441s] Deallocating buffers... [0.055s] Loading trace points... [0.059s] Sorting trace points... [1.339s] Computing alignments... [39.546s] Deallocating buffers... [0.046s] Loading trace points... [0.087s] Sorting trace points... [1.305s] Computing alignments... [41.538s] Deallocating buffers... [0.058s] Loading trace points... [0.072s] Sorting trace points... [1.056s] Computing alignments... [42.429s] Deallocating buffers... [0.065s] Loading trace points... [0.091s] Sorting trace points... [1.121s] Computing alignments... [43.136s] Deallocating buffers... [0.063s] Loading trace points... [0.058s] Sorting trace points... [1.268s] Computing alignments... [41.245s] Deallocating buffers... [0.057s] Loading trace points... [0.501s] Sorting trace points... [1.377s] Computing alignments... [42.39s] Deallocating buffers... [0.058s] Loading trace points... [0.107s] Sorting trace points... [1.116s] Computing alignments... [42.225s] Deallocating buffers... [0.059s] Loading trace points... [0.054s] Sorting trace points... [1.054s] Computing alignments... [41.981s] Deallocating buffers... [0.053s] Loading trace points... [0.06s] Sorting trace points... [1.366s] Computing alignments... [42.236s] Deallocating buffers... [0.064s] Loading trace points... [0.05s] Sorting trace points... [1.164s] Computing alignments... [42.271s] Deallocating buffers... [0.059s] Loading trace points... [0.065s] Sorting trace points... [1.132s] Computing alignments... [41.205s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [1.27s] Computing alignments... [39.795s] Deallocating buffers... [0.059s] Loading trace points... [0s] [694.717s] Deallocating reference... [0.093s] Loading reference sequences... [31.09s] Masking reference... [31.088s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.961s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.402s] Building query seed array... [1.751s] Computing hash join... [4.717s] Masking low complexity seeds... [0.149s] Searching alignments... [294.733s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.337s] Building query seed array... [1.928s] Computing hash join... [5.314s] Masking low complexity seeds... [0.158s] Searching alignments... [123.207s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.217s] Building query seed array... [1.969s] Computing hash join... [5.052s] Masking low complexity seeds... [0.156s] Searching alignments... [95.841s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.09s] Building query seed array... [1.658s] Computing hash join... [4.8s] Masking low complexity seeds... [0.153s] Searching alignments... [91.304s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.522s] Building query seed array... [1.513s] Computing hash join... [4.641s] Masking low complexity seeds... [0.141s] Searching alignments... [130.003s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.91s] Building query seed array... [1.745s] Computing hash join... [4.993s] Masking low complexity seeds... [0.144s] Searching alignments... [106.624s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.366s] Building query seed array... [1.816s] Computing hash join... [4.652s] Masking low complexity seeds... [0.148s] Searching alignments... [79.862s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.028s] Building query seed array... [1.544s] Computing hash join... [4.746s] Masking low complexity seeds... [0.15s] Searching alignments... [83.124s] Deallocating memory... [0s] Deallocating buffers... [0.162s] Clearing query masking... [1.237s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.057s] Sorting trace points... [1.332s] Computing alignments... [40.161s] Deallocating buffers... [0.066s] Loading trace points... [0.04s] Sorting trace points... [0.986s] Computing alignments... [41.554s] Deallocating buffers... [0.071s] Loading trace points... [0.068s] Sorting trace points... [1.293s] Computing alignments... [39.148s] Deallocating buffers... [0.065s] Loading trace points... [0.082s] Sorting trace points... [1.384s] Computing alignments... [42.36s] Deallocating buffers... [0.064s] Loading trace points... [0.057s] Sorting trace points... [0.991s] Computing alignments... [38.749s] Deallocating buffers... [0.033s] Loading trace points... [0.046s] Sorting trace points... [1.193s] Computing alignments... [40.935s] Deallocating buffers... [0.066s] Loading trace points... [0.065s] Sorting trace points... [1.27s] Computing alignments... [41.877s] Deallocating buffers... [0.053s] Loading trace points... [0.048s] Sorting trace points... [1.365s] Computing alignments... [43.515s] Deallocating buffers... [0.058s] Loading trace points... [0.046s] Sorting trace points... [1.037s] Computing alignments... [40.938s] Deallocating buffers... [0.052s] Loading trace points... [0.048s] Sorting trace points... [1.082s] Computing alignments... [41.727s] Deallocating buffers... [0.057s] Loading trace points... [0.223s] Sorting trace points... [1.391s] Computing alignments... [41.754s] Deallocating buffers... [0.052s] Loading trace points... [0.07s] Sorting trace points... [1.308s] Computing alignments... [41.243s] Deallocating buffers... [0.063s] Loading trace points... [0.062s] Sorting trace points... [1.371s] Computing alignments... [41.237s] Deallocating buffers... [0.065s] Loading trace points... [0.047s] Sorting trace points... [1.344s] Computing alignments... [41.075s] Deallocating buffers... [0.059s] Loading trace points... [0.091s] Sorting trace points... [1.312s] Computing alignments... [40.813s] Deallocating buffers... [0.062s] Loading trace points... [0s] Sorting trace points... [1.286s] Computing alignments... [39.174s] Deallocating buffers... [0.048s] Loading trace points... [0s] [685.302s] Deallocating reference... [0.084s] Loading reference sequences... [29.549s] Masking reference... [30.9s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.736s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.227s] Building query seed array... [1.706s] Computing hash join... [4.852s] Masking low complexity seeds... [0.157s] Searching alignments... [300.298s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.812s] Building query seed array... [1.896s] Computing hash join... [5.196s] Masking low complexity seeds... [0.163s] Searching alignments... [123.801s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.536s] Building query seed array... [2.016s] Computing hash join... [4.722s] Masking low complexity seeds... [0.155s] Searching alignments... [97.521s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.843s] Building query seed array... [1.653s] Computing hash join... [5.179s] Masking low complexity seeds... [0.153s] Searching alignments... [91.562s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.307s] Building query seed array... [1.486s] Computing hash join... [5.264s] Masking low complexity seeds... [0.15s] Searching alignments... [130.804s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.621s] Building query seed array... [1.736s] Computing hash join... [4.829s] Masking low complexity seeds... [0.155s] Searching alignments... [107.338s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.451s] Building query seed array... [1.841s] Computing hash join... [4.89s] Masking low complexity seeds... [0.156s] Searching alignments... [80.512s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.958s] Building query seed array... [1.525s] Computing hash join... [5.242s] Masking low complexity seeds... [0.15s] Searching alignments... [84.497s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.189s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.229s] Sorting trace points... [1.36s] Computing alignments... [39.201s] Deallocating buffers... [0.026s] Loading trace points... [0.064s] Sorting trace points... [1.264s] Computing alignments... [40.89s] Deallocating buffers... [0.038s] Loading trace points... [0.05s] Sorting trace points... [1.321s] Computing alignments... [39.108s] Deallocating buffers... [0.033s] Loading trace points... [0.06s] Sorting trace points... [1.391s] Computing alignments... [42.326s] Deallocating buffers... [0.033s] Loading trace points... [0.054s] Sorting trace points... [1.011s] Computing alignments... [39.044s] Deallocating buffers... [0.018s] Loading trace points... [0.045s] Sorting trace points... [1.371s] Computing alignments... [40.895s] Deallocating buffers... [0.036s] Loading trace points... [0.06s] Sorting trace points... [1.344s] Computing alignments... [41.878s] Deallocating buffers... [0.034s] Loading trace points... [0.086s] Sorting trace points... [1.36s] Computing alignments... [42.335s] Deallocating buffers... [0.025s] Loading trace points... [0.397s] Sorting trace points... [1.205s] Computing alignments... [40.697s] Deallocating buffers... [0.028s] Loading trace points... [0.057s] Sorting trace points... [1.359s] Computing alignments... [41.188s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.039s] Computing alignments... [41.454s] Deallocating buffers... [0.034s] Loading trace points... [0.052s] Sorting trace points... [1.342s] Computing alignments... [40.782s] Deallocating buffers... [0.035s] Loading trace points... [0.063s] Sorting trace points... [1.343s] Computing alignments... [40.904s] Deallocating buffers... [0.033s] Loading trace points... [0.061s] Sorting trace points... [1.065s] Computing alignments... [40.783s] Deallocating buffers... [0.039s] Loading trace points... [0.064s] Sorting trace points... [1.363s] Computing alignments... [40.608s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.158s] Computing alignments... [39.358s] Deallocating buffers... [0.038s] Loading trace points... [0s] [680.775s] Deallocating reference... [0.112s] Loading reference sequences... [29.302s] Masking reference... [30.994s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.106s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.632s] Building query seed array... [1.664s] Computing hash join... [4.83s] Masking low complexity seeds... [0.152s] Searching alignments... [291.516s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.089s] Building query seed array... [1.897s] Computing hash join... [5.159s] Masking low complexity seeds... [0.156s] Searching alignments... [123.163s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.178s] Building query seed array... [2.03s] Computing hash join... [5.37s] Masking low complexity seeds... [0.158s] Searching alignments... [97.566s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.802s] Building query seed array... [1.614s] Computing hash join... [5.191s] Masking low complexity seeds... [0.157s] Searching alignments... [92.494s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.207s] Building query seed array... [1.506s] Computing hash join... [4.968s] Masking low complexity seeds... [0.147s] Searching alignments... [134.286s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.403s] Building query seed array... [1.738s] Computing hash join... [5.165s] Masking low complexity seeds... [0.144s] Searching alignments... [108.609s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.716s] Building query seed array... [1.79s] Computing hash join... [5.182s] Masking low complexity seeds... [0.153s] Searching alignments... [79.811s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.127s] Building query seed array... [1.585s] Computing hash join... [4.859s] Masking low complexity seeds... [0.15s] Searching alignments... [85.022s] Deallocating memory... [0s] Deallocating buffers... [0.163s] Clearing query masking... [1.26s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.06s] Sorting trace points... [1.387s] Computing alignments... [41.574s] Deallocating buffers... [0.069s] Loading trace points... [0.102s] Sorting trace points... [1.181s] Computing alignments... [42.751s] Deallocating buffers... [0.056s] Loading trace points... [0.046s] Sorting trace points... [1.293s] Computing alignments... [40.399s] Deallocating buffers... [0.051s] Loading trace points... [0.057s] Sorting trace points... [1.199s] Computing alignments... [43.561s] Deallocating buffers... [0.041s] Loading trace points... [0.052s] Sorting trace points... [1.048s] Computing alignments... [40.5s] Deallocating buffers... [0.033s] Loading trace points... [0.001s] Sorting trace points... [0.929s] Computing alignments... [42.595s] Deallocating buffers... [0.051s] Loading trace points... [0.072s] Sorting trace points... [1.169s] Computing alignments... [43.126s] Deallocating buffers... [0.047s] Loading trace points... [0.061s] Sorting trace points... [1.256s] Computing alignments... [44.67s] Deallocating buffers... [0.05s] Loading trace points... [0.081s] Sorting trace points... [1.24s] Computing alignments... [42.618s] Deallocating buffers... [0.044s] Loading trace points... [0.073s] Sorting trace points... [1.261s] Computing alignments... [42.794s] Deallocating buffers... [0.05s] Loading trace points... [0.067s] Sorting trace points... [1.331s] Computing alignments... [43.1s] Deallocating buffers... [0.05s] Loading trace points... [0.057s] Sorting trace points... [1.127s] Computing alignments... [42.71s] Deallocating buffers... [0.044s] Loading trace points... [0.064s] Sorting trace points... [1.384s] Computing alignments... [42.628s] Deallocating buffers... [0.044s] Loading trace points... [0.069s] Sorting trace points... [1.328s] Computing alignments... [42.259s] Deallocating buffers... [0.047s] Loading trace points... [0.049s] Sorting trace points... [1.329s] Computing alignments... [42.425s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [1.286s] Computing alignments... [40.654s] Deallocating buffers... [0.045s] Loading trace points... [0s] [706.932s] Deallocating reference... [0.095s] Loading reference sequences... [29.141s] Masking reference... [31.126s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.618s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.077s] Building query seed array... [1.684s] Computing hash join... [4.664s] Masking low complexity seeds... [0.151s] Searching alignments... [289.536s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.494s] Building query seed array... [1.926s] Computing hash join... [5.264s] Masking low complexity seeds... [0.161s] Searching alignments... [124.051s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.393s] Building query seed array... [1.971s] Computing hash join... [4.856s] Masking low complexity seeds... [0.154s] Searching alignments... [95.395s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.214s] Building query seed array... [1.665s] Computing hash join... [5.171s] Masking low complexity seeds... [0.161s] Searching alignments... [90.728s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.02s] Building query seed array... [1.525s] Computing hash join... [4.962s] Masking low complexity seeds... [0.149s] Searching alignments... [129.768s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.302s] Building query seed array... [1.717s] Computing hash join... [4.616s] Masking low complexity seeds... [0.138s] Searching alignments... [107.905s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.11s] Building query seed array... [1.801s] Computing hash join... [4.96s] Masking low complexity seeds... [0.146s] Searching alignments... [81.731s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.2s] Building query seed array... [1.529s] Computing hash join... [4.696s] Masking low complexity seeds... [0.147s] Searching alignments... [83.28s] Deallocating memory... [0s] Deallocating buffers... [0.159s] Clearing query masking... [1.178s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.273s] Sorting trace points... [1.324s] Computing alignments... [39.63s] Deallocating buffers... [0.024s] Loading trace points... [0.066s] Sorting trace points... [1.31s] Computing alignments... [40.786s] Deallocating buffers... [0.029s] Loading trace points... [0.092s] Sorting trace points... [1.293s] Computing alignments... [39.736s] Deallocating buffers... [0.023s] Loading trace points... [0.131s] Sorting trace points... [1.396s] Computing alignments... [42.883s] Deallocating buffers... [0.025s] Loading trace points... [0.049s] Sorting trace points... [1.244s] Computing alignments... [39.266s] Deallocating buffers... [0.02s] Loading trace points... [0.055s] Sorting trace points... [1.047s] Computing alignments... [40.999s] Deallocating buffers... [0.028s] Loading trace points... [0.067s] Sorting trace points... [1.274s] Computing alignments... [41.975s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.31s] Computing alignments... [42.999s] Deallocating buffers... [0.02s] Loading trace points... [0.056s] Sorting trace points... [1.334s] Computing alignments... [41.155s] Deallocating buffers... [0.027s] Loading trace points... [0.044s] Sorting trace points... [1.149s] Computing alignments... [41.491s] Deallocating buffers... [0.02s] Loading trace points... [0.077s] Sorting trace points... [1.322s] Computing alignments... [41.946s] Deallocating buffers... [0.025s] Loading trace points... [0.049s] Sorting trace points... [1.368s] Computing alignments... [41.325s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.363s] Computing alignments... [41.198s] Deallocating buffers... [0.024s] Loading trace points... [0.052s] Sorting trace points... [1.32s] Computing alignments... [41.214s] Deallocating buffers... [0.026s] Loading trace points... [0.075s] Sorting trace points... [1.281s] Computing alignments... [41.303s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.288s] Computing alignments... [39.442s] Deallocating buffers... [0.024s] Loading trace points... [0s] [686.928s] Deallocating reference... [0.087s] Loading reference sequences... [29.474s] Masking reference... [30.894s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.718s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.685s] Building query seed array... [1.69s] Computing hash join... [5.126s] Masking low complexity seeds... [0.16s] Searching alignments... [293.137s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.823s] Building query seed array... [1.897s] Computing hash join... [4.84s] Masking low complexity seeds... [0.148s] Searching alignments... [123.388s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.735s] Building query seed array... [2s] Computing hash join... [4.878s] Masking low complexity seeds... [0.149s] Searching alignments... [97.54s] Deallocating memory... [0.003s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.758s] Building query seed array... [1.599s] Computing hash join... [5.075s] Masking low complexity seeds... [0.153s] Searching alignments... [90.848s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.533s] Building query seed array... [1.483s] Computing hash join... [4.772s] Masking low complexity seeds... [0.144s] Searching alignments... [129.33s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.268s] Building query seed array... [1.707s] Computing hash join... [5.178s] Masking low complexity seeds... [0.158s] Searching alignments... [105.363s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.399s] Building query seed array... [1.832s] Computing hash join... [4.67s] Masking low complexity seeds... [0.142s] Searching alignments... [80.204s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.045s] Building query seed array... [1.53s] Computing hash join... [5.122s] Masking low complexity seeds... [0.156s] Searching alignments... [81.6s] Deallocating memory... [0s] Deallocating buffers... [0.161s] Clearing query masking... [1.237s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.085s] Sorting trace points... [1.334s] Computing alignments... [40.522s] Deallocating buffers... [0.026s] Loading trace points... [0.467s] Sorting trace points... [1.312s] Computing alignments... [41.009s] Deallocating buffers... [0.022s] Loading trace points... [0.096s] Sorting trace points... [0.994s] Computing alignments... [40.178s] Deallocating buffers... [0.027s] Loading trace points... [0.071s] Sorting trace points... [1.11s] Computing alignments... [43.23s] Deallocating buffers... [0.026s] Loading trace points... [0.211s] Sorting trace points... [1.324s] Computing alignments... [39.782s] Deallocating buffers... [0.016s] Loading trace points... [0.104s] Sorting trace points... [1.21s] Computing alignments... [41.527s] Deallocating buffers... [0.028s] Loading trace points... [0.07s] Sorting trace points... [1.052s] Computing alignments... [42.173s] Deallocating buffers... [0.018s] Loading trace points... [0.055s] Sorting trace points... [1.372s] Computing alignments... [43.517s] Deallocating buffers... [0.028s] Loading trace points... [0.087s] Sorting trace points... [1.347s] Computing alignments... [41.332s] Deallocating buffers... [0.027s] Loading trace points... [0.09s] Sorting trace points... [1.169s] Computing alignments... [42.113s] Deallocating buffers... [0.033s] Loading trace points... [0.067s] Sorting trace points... [1.199s] Computing alignments... [41.954s] Deallocating buffers... [0.025s] Loading trace points... [0.045s] Sorting trace points... [1.356s] Computing alignments... [41.731s] Deallocating buffers... [0.033s] Loading trace points... [0.072s] Sorting trace points... [1.435s] Computing alignments... [41.318s] Deallocating buffers... [0.027s] Loading trace points... [0.054s] Sorting trace points... [1.319s] Computing alignments... [41.224s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.338s] Computing alignments... [41.774s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [0.985s] Computing alignments... [39.579s] Deallocating buffers... [0.018s] Loading trace points... [0s] [691.953s] Deallocating reference... [0.06s] Loading reference sequences... [30.392s] Masking reference... [31.141s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.006s] Building reference histograms... [32.524s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.131s] Building query seed array... [1.724s] Computing hash join... [5.365s] Masking low complexity seeds... [0.157s] Searching alignments... [289.839s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.527s] Building query seed array... [2.397s] Computing hash join... [5.303s] Masking low complexity seeds... [0.157s] Searching alignments... [124.352s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.319s] Building query seed array... [2.152s] Computing hash join... [4.806s] Masking low complexity seeds... [0.151s] Searching alignments... [97.943s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.605s] Building query seed array... [1.794s] Computing hash join... [4.703s] Masking low complexity seeds... [0.162s] Searching alignments... [91.339s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.406s] Building query seed array... [1.601s] Computing hash join... [4.65s] Masking low complexity seeds... [0.138s] Searching alignments... [134.442s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.609s] Building query seed array... [2.016s] Computing hash join... [5.021s] Masking low complexity seeds... [0.146s] Searching alignments... [105.508s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.639s] Building query seed array... [1.966s] Computing hash join... [5s] Masking low complexity seeds... [0.143s] Searching alignments... [79.84s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.952s] Building query seed array... [1.692s] Computing hash join... [5.489s] Masking low complexity seeds... [0.162s] Searching alignments... [84.124s] Deallocating memory... [0s] Deallocating buffers... [0.896s] Clearing query masking... [1.185s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.052s] Sorting trace points... [1.348s] Computing alignments... [38.545s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.254s] Computing alignments... [40.374s] Deallocating buffers... [0.031s] Loading trace points... [0.09s] Sorting trace points... [1.289s] Computing alignments... [38.098s] Deallocating buffers... [0.023s] Loading trace points... [0.081s] Sorting trace points... [1.018s] Computing alignments... [40.735s] Deallocating buffers... [0.027s] Loading trace points... [0.041s] Sorting trace points... [1.299s] Computing alignments... [38.01s] Deallocating buffers... [0.027s] Loading trace points... [0.111s] Sorting trace points... [1.363s] Computing alignments... [39.9s] Deallocating buffers... [0.03s] Loading trace points... [0.074s] Sorting trace points... [1.165s] Computing alignments... [40.393s] Deallocating buffers... [0.027s] Loading trace points... [0.059s] Sorting trace points... [1.371s] Computing alignments... [41.036s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [1.31s] Computing alignments... [39.951s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.357s] Computing alignments... [40.879s] Deallocating buffers... [0.028s] Loading trace points... [0.123s] Sorting trace points... [1.36s] Computing alignments... [40.509s] Deallocating buffers... [0.025s] Loading trace points... [0.06s] Sorting trace points... [1.344s] Computing alignments... [40.184s] Deallocating buffers... [0.028s] Loading trace points... [0.067s] Sorting trace points... [1.368s] Computing alignments... [39.866s] Deallocating buffers... [0.024s] Loading trace points... [0.045s] Sorting trace points... [1.275s] Computing alignments... [39.51s] Deallocating buffers... [0.024s] Loading trace points... [0.102s] Sorting trace points... [1.206s] Computing alignments... [39.908s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.356s] Computing alignments... [38.774s] Deallocating buffers... [0.023s] Loading trace points... [0s] [665.943s] Deallocating reference... [0.061s] Loading reference sequences... [34.102s] Masking reference... [31.222s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.69s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.258s] Building query seed array... [1.705s] Computing hash join... [4.99s] Masking low complexity seeds... [0.151s] Searching alignments... [294.205s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.458s] Building query seed array... [1.89s] Computing hash join... [5.16s] Masking low complexity seeds... [0.158s] Searching alignments... [122.672s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.574s] Building query seed array... [2.038s] Computing hash join... [5.119s] Masking low complexity seeds... [0.157s] Searching alignments... [96.548s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.218s] Building query seed array... [1.649s] Computing hash join... [5.144s] Masking low complexity seeds... [0.161s] Searching alignments... [92.877s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.226s] Building query seed array... [1.514s] Computing hash join... [5.104s] Masking low complexity seeds... [0.148s] Searching alignments... [129.485s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.507s] Building query seed array... [1.718s] Computing hash join... [5.14s] Masking low complexity seeds... [0.15s] Searching alignments... [107.436s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.272s] Building query seed array... [1.86s] Computing hash join... [4.907s] Masking low complexity seeds... [0.139s] Searching alignments... [80.261s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.803s] Building query seed array... [1.558s] Computing hash join... [5.139s] Masking low complexity seeds... [0.144s] Searching alignments... [83.046s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [1.218s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.119s] Sorting trace points... [1.331s] Computing alignments... [38.956s] Deallocating buffers... [0.036s] Loading trace points... [0.065s] Sorting trace points... [1.116s] Computing alignments... [40.324s] Deallocating buffers... [0.04s] Loading trace points... [0.094s] Sorting trace points... [1.285s] Computing alignments... [38.475s] Deallocating buffers... [0.031s] Loading trace points... [0.079s] Sorting trace points... [1.391s] Computing alignments... [41.354s] Deallocating buffers... [0.037s] Loading trace points... [0.069s] Sorting trace points... [1.141s] Computing alignments... [38.489s] Deallocating buffers... [0.032s] Loading trace points... [0.1s] Sorting trace points... [1.22s] Computing alignments... [40.382s] Deallocating buffers... [0.044s] Loading trace points... [0.089s] Sorting trace points... [1.343s] Computing alignments... [40.762s] Deallocating buffers... [0.035s] Loading trace points... [0.061s] Sorting trace points... [1.245s] Computing alignments... [41.798s] Deallocating buffers... [0.037s] Loading trace points... [0.047s] Sorting trace points... [1.273s] Computing alignments... [40.786s] Deallocating buffers... [0.041s] Loading trace points... [0.863s] Sorting trace points... [1.232s] Computing alignments... [40.948s] Deallocating buffers... [0.045s] Loading trace points... [0.064s] Sorting trace points... [1.041s] Computing alignments... [40.93s] Deallocating buffers... [0.026s] Loading trace points... [0.069s] Sorting trace points... [1.105s] Computing alignments... [40.232s] Deallocating buffers... [0.037s] Loading trace points... [0.061s] Sorting trace points... [1.313s] Computing alignments... [40.317s] Deallocating buffers... [0.036s] Loading trace points... [0.056s] Sorting trace points... [1.086s] Computing alignments... [40.223s] Deallocating buffers... [0.027s] Loading trace points... [0.002s] Sorting trace points... [1.302s] Computing alignments... [40.379s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.354s] Computing alignments... [38.735s] Deallocating buffers... [0.034s] Loading trace points... [0s] [672.377s] Deallocating reference... [0.091s] Loading reference sequences... [30.13s] Masking reference... [31.009s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.556s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.259s] Building query seed array... [1.692s] Computing hash join... [5.408s] Masking low complexity seeds... [0.159s] Searching alignments... [298.507s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.168s] Building query seed array... [2.366s] Computing hash join... [4.841s] Masking low complexity seeds... [0.155s] Searching alignments... [120.983s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.962s] Building query seed array... [2.121s] Computing hash join... [5.525s] Masking low complexity seeds... [0.164s] Searching alignments... [94.245s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.299s] Building query seed array... [1.784s] Computing hash join... [5.575s] Masking low complexity seeds... [0.158s] Searching alignments... [91.734s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.971s] Building query seed array... [1.63s] Computing hash join... [5.29s] Masking low complexity seeds... [0.167s] Searching alignments... [136.374s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.387s] Building query seed array... [1.839s] Computing hash join... [5.448s] Masking low complexity seeds... [0.159s] Searching alignments... [105.872s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.56s] Building query seed array... [1.956s] Computing hash join... [5.363s] Masking low complexity seeds... [0.15s] Searching alignments... [80.523s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.058s] Building query seed array... [1.709s] Computing hash join... [5.252s] Masking low complexity seeds... [0.158s] Searching alignments... [81.834s] Deallocating memory... [0s] Deallocating buffers... [1.088s] Clearing query masking... [1.186s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.216s] Sorting trace points... [1.387s] Computing alignments... [36.254s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.072s] Computing alignments... [38.021s] Deallocating buffers... [0.027s] Loading trace points... [0.096s] Sorting trace points... [1.283s] Computing alignments... [36.241s] Deallocating buffers... [0.019s] Loading trace points... [0.09s] Sorting trace points... [1.215s] Computing alignments... [38.875s] Deallocating buffers... [0.028s] Loading trace points... [0.06s] Sorting trace points... [1.295s] Computing alignments... [35.945s] Deallocating buffers... [0.023s] Loading trace points... [0.09s] Sorting trace points... [1.014s] Computing alignments... [37.571s] Deallocating buffers... [0.019s] Loading trace points... [0.102s] Sorting trace points... [1.353s] Computing alignments... [38.12s] Deallocating buffers... [0.029s] Loading trace points... [0.079s] Sorting trace points... [1.181s] Computing alignments... [38.159s] Deallocating buffers... [0.018s] Loading trace points... [0.051s] Sorting trace points... [1.329s] Computing alignments... [37.462s] Deallocating buffers... [0.023s] Loading trace points... [0.062s] Sorting trace points... [1.35s] Computing alignments... [37.986s] Deallocating buffers... [0.028s] Loading trace points... [0.13s] Sorting trace points... [1.399s] Computing alignments... [37.843s] Deallocating buffers... [0.025s] Loading trace points... [0.07s] Sorting trace points... [1.16s] Computing alignments... [37.642s] Deallocating buffers... [0.028s] Loading trace points... [0.081s] Sorting trace points... [1.324s] Computing alignments... [37.096s] Deallocating buffers... [0.02s] Loading trace points... [0.057s] Sorting trace points... [1.177s] Computing alignments... [36.906s] Deallocating buffers... [0.019s] Loading trace points... [0.182s] Sorting trace points... [1.349s] Computing alignments... [37.345s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.284s] Computing alignments... [36.634s] Deallocating buffers... [0.024s] Loading trace points... [0s] [627.223s] Deallocating reference... [0.08s] Loading reference sequences... [30.87s] Masking reference... [30.876s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.405s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.176s] Building query seed array... [1.706s] Computing hash join... [5.343s] Masking low complexity seeds... [0.152s] Searching alignments... [292.687s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.428s] Building query seed array... [1.939s] Computing hash join... [5.214s] Masking low complexity seeds... [0.159s] Searching alignments... [121.742s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.459s] Building query seed array... [1.98s] Computing hash join... [5.368s] Masking low complexity seeds... [0.166s] Searching alignments... [94.78s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.92s] Building query seed array... [1.589s] Computing hash join... [5.408s] Masking low complexity seeds... [0.164s] Searching alignments... [93.354s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.943s] Building query seed array... [1.479s] Computing hash join... [5.282s] Masking low complexity seeds... [0.155s] Searching alignments... [134.004s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.016s] Building query seed array... [1.689s] Computing hash join... [5.215s] Masking low complexity seeds... [0.155s] Searching alignments... [107.711s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.297s] Building query seed array... [1.82s] Computing hash join... [5.2s] Masking low complexity seeds... [0.149s] Searching alignments... [79.836s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.837s] Building query seed array... [1.57s] Computing hash join... [5.149s] Masking low complexity seeds... [0.148s] Searching alignments... [84.194s] Deallocating memory... [0s] Deallocating buffers... [0.146s] Clearing query masking... [1.236s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.081s] Sorting trace points... [1.338s] Computing alignments... [42.585s] Deallocating buffers... [0.052s] Loading trace points... [0.269s] Sorting trace points... [1.184s] Computing alignments... [43.46s] Deallocating buffers... [0.051s] Loading trace points... [0.052s] Sorting trace points... [1.32s] Computing alignments... [41.288s] Deallocating buffers... [0.032s] Loading trace points... [0.036s] Sorting trace points... [1.392s] Computing alignments... [44.99s] Deallocating buffers... [0.043s] Loading trace points... [0.083s] Sorting trace points... [1.271s] Computing alignments... [41.27s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [0.973s] Computing alignments... [43.185s] Deallocating buffers... [0.033s] Loading trace points... [0.065s] Sorting trace points... [1.333s] Computing alignments... [43.832s] Deallocating buffers... [0.044s] Loading trace points... [0.063s] Sorting trace points... [1.032s] Computing alignments... [45.652s] Deallocating buffers... [0.046s] Loading trace points... [0.056s] Sorting trace points... [1.167s] Computing alignments... [43.409s] Deallocating buffers... [0.041s] Loading trace points... [0.511s] Sorting trace points... [1.237s] Computing alignments... [43.711s] Deallocating buffers... [0.046s] Loading trace points... [0.003s] Sorting trace points... [1.114s] Computing alignments... [43.877s] Deallocating buffers... [0.043s] Loading trace points... [0.054s] Sorting trace points... [1.043s] Computing alignments... [43.678s] Deallocating buffers... [0.041s] Loading trace points... [0.057s] Sorting trace points... [1.33s] Computing alignments... [43.623s] Deallocating buffers... [0.04s] Loading trace points... [0.496s] Sorting trace points... [1.163s] Computing alignments... [43.212s] Deallocating buffers... [0.039s] Loading trace points... [0.057s] Sorting trace points... [1.376s] Computing alignments... [43.211s] Deallocating buffers... [0.046s] Loading trace points... [0s] Sorting trace points... [1.24s] Computing alignments... [41.535s] Deallocating buffers... [0.049s] Loading trace points... [0s] [721.721s] Deallocating reference... [0.095s] Loading reference sequences... [251.541s] Masking reference... [30.891s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.812s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.632s] Building query seed array... [1.716s] Computing hash join... [5.633s] Masking low complexity seeds... [0.157s] Searching alignments... [295.748s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.2s] Building query seed array... [2.398s] Computing hash join... [5.046s] Masking low complexity seeds... [0.182s] Searching alignments... [125.723s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.475s] Building query seed array... [2.204s] Computing hash join... [4.776s] Masking low complexity seeds... [0.156s] Searching alignments... [96.917s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.551s] Building query seed array... [1.817s] Computing hash join... [4.913s] Masking low complexity seeds... [0.171s] Searching alignments... [93.944s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.258s] Building query seed array... [1.595s] Computing hash join... [4.626s] Masking low complexity seeds... [0.137s] Searching alignments... [130.25s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.85s] Building query seed array... [1.882s] Computing hash join... [5.091s] Masking low complexity seeds... [0.146s] Searching alignments... [108.392s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.936s] Building query seed array... [2.064s] Computing hash join... [5.439s] Masking low complexity seeds... [0.161s] Searching alignments... [80.793s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.521s] Building query seed array... [1.73s] Computing hash join... [5.612s] Masking low complexity seeds... [0.17s] Searching alignments... [83.174s] Deallocating memory... [0s] Deallocating buffers... [1.344s] Clearing query masking... [1.162s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.292s] Sorting trace points... [1.364s] Computing alignments... [41.4s] Deallocating buffers... [0.074s] Loading trace points... [0.056s] Sorting trace points... [1.183s] Computing alignments... [41.953s] Deallocating buffers... [0.058s] Loading trace points... [0.07s] Sorting trace points... [1.341s] Computing alignments... [41.009s] Deallocating buffers... [0.031s] Loading trace points... [0.063s] Sorting trace points... [1.077s] Computing alignments... [44.233s] Deallocating buffers... [0.053s] Loading trace points... [0.26s] Sorting trace points... [1.037s] Computing alignments... [40.249s] Deallocating buffers... [0.034s] Loading trace points... [0.056s] Sorting trace points... [1.333s] Computing alignments... [42.153s] Deallocating buffers... [0.041s] Loading trace points... [0.052s] Sorting trace points... [1.345s] Computing alignments... [43.043s] Deallocating buffers... [0.056s] Loading trace points... [0.097s] Sorting trace points... [1.335s] Computing alignments... [44.341s] Deallocating buffers... [0.054s] Loading trace points... [0.094s] Sorting trace points... [1.099s] Computing alignments... [42.037s] Deallocating buffers... [0.057s] Loading trace points... [0.001s] Sorting trace points... [1.136s] Computing alignments... [42.968s] Deallocating buffers... [0.041s] Loading trace points... [0.052s] Sorting trace points... [1.322s] Computing alignments... [43.268s] Deallocating buffers... [0.056s] Loading trace points... [0.108s] Sorting trace points... [1.249s] Computing alignments... [42.469s] Deallocating buffers... [0.061s] Loading trace points... [0.098s] Sorting trace points... [1.041s] Computing alignments... [42.584s] Deallocating buffers... [0.05s] Loading trace points... [0.108s] Sorting trace points... [1.31s] Computing alignments... [42.383s] Deallocating buffers... [0.044s] Loading trace points... [0.062s] Sorting trace points... [1.392s] Computing alignments... [42.447s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [1.317s] Computing alignments... [40.593s] Deallocating buffers... [0.043s] Loading trace points... [0s] [706.511s] Deallocating reference... [0.061s] Loading reference sequences... [29.137s] Masking reference... [30.884s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [32.733s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.467s] Building query seed array... [1.702s] Computing hash join... [5.565s] Masking low complexity seeds... [0.173s] Searching alignments... [290.666s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.482s] Building query seed array... [2.134s] Computing hash join... [5.461s] Masking low complexity seeds... [0.165s] Searching alignments... [121.769s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.414s] Building query seed array... [2.231s] Computing hash join... [5.697s] Masking low complexity seeds... [0.169s] Searching alignments... [94.597s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.241s] Building query seed array... [1.77s] Computing hash join... [5.402s] Masking low complexity seeds... [0.174s] Searching alignments... [93.54s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.613s] Building query seed array... [1.635s] Computing hash join... [5.28s] Masking low complexity seeds... [0.173s] Searching alignments... [131.557s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.555s] Building query seed array... [1.975s] Computing hash join... [5.007s] Masking low complexity seeds... [0.161s] Searching alignments... [106.043s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.464s] Building query seed array... [1.917s] Computing hash join... [5.192s] Masking low complexity seeds... [0.145s] Searching alignments... [79.56s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.644s] Building query seed array... [1.68s] Computing hash join... [5.436s] Masking low complexity seeds... [0.149s] Searching alignments... [83.322s] Deallocating memory... [0s] Deallocating buffers... [1.172s] Clearing query masking... [1.171s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.414s] Sorting trace points... [1.174s] Computing alignments... [39.225s] Deallocating buffers... [0.032s] Loading trace points... [0.073s] Sorting trace points... [1.107s] Computing alignments... [40.27s] Deallocating buffers... [0.034s] Loading trace points... [0.112s] Sorting trace points... [1.069s] Computing alignments... [39.019s] Deallocating buffers... [0.025s] Loading trace points... [0.1s] Sorting trace points... [1.418s] Computing alignments... [41.915s] Deallocating buffers... [0.025s] Loading trace points... [0.067s] Sorting trace points... [1.094s] Computing alignments... [38.535s] Deallocating buffers... [0.018s] Loading trace points... [0.074s] Sorting trace points... [1.333s] Computing alignments... [40.178s] Deallocating buffers... [0.034s] Loading trace points... [0.112s] Sorting trace points... [0.969s] Computing alignments... [40.798s] Deallocating buffers... [0.025s] Loading trace points... [0.094s] Sorting trace points... [1.289s] Computing alignments... [41.767s] Deallocating buffers... [0.025s] Loading trace points... [0.068s] Sorting trace points... [1.049s] Computing alignments... [40.452s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [1.285s] Computing alignments... [40.831s] Deallocating buffers... [0.025s] Loading trace points... [0.068s] Sorting trace points... [1.227s] Computing alignments... [41.082s] Deallocating buffers... [0.027s] Loading trace points... [0.088s] Sorting trace points... [1.338s] Computing alignments... [40.635s] Deallocating buffers... [0.028s] Loading trace points... [0.059s] Sorting trace points... [1.351s] Computing alignments... [40.296s] Deallocating buffers... [0.024s] Loading trace points... [0.077s] Sorting trace points... [1.112s] Computing alignments... [40.026s] Deallocating buffers... [0.026s] Loading trace points... [0.059s] Sorting trace points... [1.304s] Computing alignments... [40.293s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.329s] Computing alignments... [39.115s] Deallocating buffers... [0.024s] Loading trace points... [0s] [673.001s] Deallocating reference... [0.083s] Loading reference sequences... [24.383s] Masking reference... [25.036s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [26.346s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.183s] Building query seed array... [1.67s] Computing hash join... [3.914s] Masking low complexity seeds... [0.145s] Searching alignments... [234.582s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.628s] Building query seed array... [1.9s] Computing hash join... [4.007s] Masking low complexity seeds... [0.146s] Searching alignments... [96.967s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.955s] Building query seed array... [2.079s] Computing hash join... [3.956s] Masking low complexity seeds... [0.141s] Searching alignments... [78.063s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.077s] Building query seed array... [1.614s] Computing hash join... [4.028s] Masking low complexity seeds... [0.147s] Searching alignments... [74.437s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.131s] Building query seed array... [1.487s] Computing hash join... [3.877s] Masking low complexity seeds... [0.136s] Searching alignments... [106.233s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.996s] Building query seed array... [1.677s] Computing hash join... [4.216s] Masking low complexity seeds... [0.139s] Searching alignments... [85.598s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.789s] Building query seed array... [1.769s] Computing hash join... [3.834s] Masking low complexity seeds... [0.126s] Searching alignments... [64.125s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.177s] Building query seed array... [1.533s] Computing hash join... [4.252s] Masking low complexity seeds... [0.137s] Searching alignments... [67.899s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.211s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.979s] Sorting trace points... [1.11s] Computing alignments... [30.516s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.052s] Computing alignments... [31.782s] Deallocating buffers... [0.019s] Loading trace points... [0.063s] Sorting trace points... [0.877s] Computing alignments... [30.272s] Deallocating buffers... [0.02s] Loading trace points... [0.051s] Sorting trace points... [1.135s] Computing alignments... [32.365s] Deallocating buffers... [0.023s] Loading trace points... [0.057s] Sorting trace points... [1.063s] Computing alignments... [30.206s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [1.047s] Computing alignments... [31.526s] Deallocating buffers... [0.022s] Loading trace points... [0.076s] Sorting trace points... [0.985s] Computing alignments... [31.968s] Deallocating buffers... [0.022s] Loading trace points... [0.067s] Sorting trace points... [1.097s] Computing alignments... [32.415s] Deallocating buffers... [0.02s] Loading trace points... [0.919s] Sorting trace points... [0.938s] Computing alignments... [31.233s] Deallocating buffers... [0.02s] Loading trace points... [0.067s] Sorting trace points... [1.096s] Computing alignments... [32.041s] Deallocating buffers... [0.02s] Loading trace points... [0.062s] Sorting trace points... [0.913s] Computing alignments... [31.903s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [1.112s] Computing alignments... [31.748s] Deallocating buffers... [0.026s] Loading trace points... [0.079s] Sorting trace points... [1.107s] Computing alignments... [31.58s] Deallocating buffers... [0.019s] Loading trace points... [0.055s] Sorting trace points... [0.829s] Computing alignments... [31.293s] Deallocating buffers... [0.02s] Loading trace points... [0.079s] Sorting trace points... [1.039s] Computing alignments... [31.461s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.091s] Computing alignments... [30.08s] Deallocating buffers... [0.019s] Loading trace points... [0s] [527.053s] Deallocating reference... [0.065s] Loading reference sequences... [0.069s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2734.31s] [2734.31s] Deallocating queries... [0.056s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.495s] [4.544s] Closing the database... [0s] Cleaning up... [0s] Total time = 29779s Reported 2567907917 pairwise alignments, 2567907917 HSPs. 4962456 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH03-33.trimmed.R2.fastq.gz complete: CH03-33.trimmed.R2.blastx.meganized.daa Now MEGANizing CH03-33.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH03-33.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (410.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,120.9s) Total reads: 4,962,456 With hits: 4,962,456 Alignments: 1,858,727,454 Assig. Taxonomy: 2,299,071 Assig. SEED: 85,911 Assig. EGGNOG: 34,598 Assig. GTDB: 206,244 Assig. EC: 368,042 Assig. INTERPRO2GO: 1,049,367 MinSupport set to: 2481 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 7,949 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (15.1s) Min-supp. changes: 6,255 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7.1s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 171 Class. SEED: 560 Class. EGGNOG: 1,876 Class. GTDB: 58 Class. EC: 2,615 Class. INTERPRO2GO: 8,902 Total time: 4,563s Peak memory: 37.5 of 195.3G MEGANization of CH03-33.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-01.trimmed.R1.fastq.gz... 100d5d1fe2c923b0d7c96f3853e97cd4 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-01.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-01.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.391s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.727s] Opening the output file... [0s] Loading query sequences... [87.398s] Masking queries... [23.868s] Algorithm: Double-indexed Building query histograms... [21.059s] Loading reference sequences... [29.991s] Masking reference... [31.861s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.009s] Building reference histograms... [32.388s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.34s] Building query seed array... [2.051s] Computing hash join... [5.772s] Masking low complexity seeds... [0.217s] Searching alignments... [468.748s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.554s] Building query seed array... [2.537s] Computing hash join... [5.381s] Masking low complexity seeds... [0.213s] Searching alignments... [198.545s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.761s] Building query seed array... [2.565s] Computing hash join... [4.958s] Masking low complexity seeds... [0.209s] Searching alignments... [148.735s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.064s] Building query seed array... [2.036s] Computing hash join... [5.585s] Masking low complexity seeds... [0.229s] Searching alignments... [147.877s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.337s] Building query seed array... [1.956s] Computing hash join... [4.882s] Masking low complexity seeds... [0.2s] Searching alignments... [214.675s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.29s] Building query seed array... [2.278s] Computing hash join... [4.742s] Masking low complexity seeds... [0.193s] Searching alignments... [164.521s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.312s] Building query seed array... [2.365s] Computing hash join... [5.201s] Masking low complexity seeds... [0.202s] Searching alignments... [122.785s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.819s] Building query seed array... [1.951s] Computing hash join... [5.126s] Masking low complexity seeds... [0.2s] Searching alignments... [125.316s] Deallocating memory... [0s] Deallocating buffers... [0.495s] Clearing query masking... [1.388s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.699s] Sorting trace points... [1.859s] Computing alignments... [55.281s] Deallocating buffers... [0.047s] Loading trace points... [0.071s] Sorting trace points... [1.51s] Computing alignments... [56.397s] Deallocating buffers... [0.04s] Loading trace points... [0.066s] Sorting trace points... [1.836s] Computing alignments... [56.719s] Deallocating buffers... [0.033s] Loading trace points... [0.135s] Sorting trace points... [1.428s] Computing alignments... [57.611s] Deallocating buffers... [0.032s] Loading trace points... [0.042s] Sorting trace points... [1.314s] Computing alignments... [55.521s] Deallocating buffers... [0.04s] Loading trace points... [0.081s] Sorting trace points... [1.651s] Computing alignments... [55.018s] Deallocating buffers... [0.033s] Loading trace points... [0.199s] Sorting trace points... [1.821s] Computing alignments... [55.143s] Deallocating buffers... [0.022s] Loading trace points... [0.851s] Sorting trace points... [1.917s] Computing alignments... [56.704s] Deallocating buffers... [0.022s] Loading trace points... [0.809s] Sorting trace points... [2.325s] Computing alignments... [55.418s] Deallocating buffers... [0.041s] Loading trace points... [0.06s] Sorting trace points... [1.673s] Computing alignments... [57.38s] Deallocating buffers... [0.04s] Loading trace points... [0.081s] Sorting trace points... [1.86s] Computing alignments... [56.117s] Deallocating buffers... [0.056s] Loading trace points... [0.044s] Sorting trace points... [1.874s] Computing alignments... [57.359s] Deallocating buffers... [0.034s] Loading trace points... [0.056s] Sorting trace points... [1.798s] Computing alignments... [55.573s] Deallocating buffers... [0.033s] Loading trace points... [0.068s] Sorting trace points... [1.846s] Computing alignments... [55.092s] Deallocating buffers... [0.041s] Loading trace points... [0.053s] Sorting trace points... [1.798s] Computing alignments... [55.077s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [1.666s] Computing alignments... [55.829s] Deallocating buffers... [0.034s] Loading trace points... [0s] [937.436s] Deallocating reference... [0.084s] Loading reference sequences... [33.34s] Masking reference... [31.001s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.694s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.378s] Building query seed array... [2.083s] Computing hash join... [5.302s] Masking low complexity seeds... [0.209s] Searching alignments... [449.451s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.02s] Building query seed array... [2.452s] Computing hash join... [5.478s] Masking low complexity seeds... [0.213s] Searching alignments... [195.582s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.815s] Building query seed array... [2.529s] Computing hash join... [5.443s] Masking low complexity seeds... [0.212s] Searching alignments... [149.143s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.217s] Building query seed array... [2.099s] Computing hash join... [5.443s] Masking low complexity seeds... [0.209s] Searching alignments... [145.418s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.497s] Building query seed array... [1.915s] Computing hash join... [5.333s] Masking low complexity seeds... [0.203s] Searching alignments... [209.705s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.417s] Building query seed array... [2.143s] Computing hash join... [5.276s] Masking low complexity seeds... [0.203s] Searching alignments... [162.39s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.618s] Building query seed array... [2.279s] Computing hash join... [5.514s] Masking low complexity seeds... [0.227s] Searching alignments... [121.975s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.045s] Building query seed array... [1.925s] Computing hash join... [4.953s] Masking low complexity seeds... [0.191s] Searching alignments... [124.35s] Deallocating memory... [0s] Deallocating buffers... [0.275s] Clearing query masking... [1.388s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.654s] Sorting trace points... [1.841s] Computing alignments... [57.664s] Deallocating buffers... [0.048s] Loading trace points... [0.049s] Sorting trace points... [1.445s] Computing alignments... [59.324s] Deallocating buffers... [0.054s] Loading trace points... [0.055s] Sorting trace points... [1.542s] Computing alignments... [58.121s] Deallocating buffers... [0.048s] Loading trace points... [0.068s] Sorting trace points... [1.529s] Computing alignments... [60.061s] Deallocating buffers... [0.049s] Loading trace points... [0.088s] Sorting trace points... [1.468s] Computing alignments... [57.545s] Deallocating buffers... [0.049s] Loading trace points... [0.088s] Sorting trace points... [1.79s] Computing alignments... [57.447s] Deallocating buffers... [0.033s] Loading trace points... [0.095s] Sorting trace points... [1.522s] Computing alignments... [57.368s] Deallocating buffers... [0.046s] Loading trace points... [0.128s] Sorting trace points... [1.815s] Computing alignments... [59.102s] Deallocating buffers... [0.046s] Loading trace points... [0.073s] Sorting trace points... [1.839s] Computing alignments... [57.098s] Deallocating buffers... [0.045s] Loading trace points... [0.042s] Sorting trace points... [1.735s] Computing alignments... [59.634s] Deallocating buffers... [0.057s] Loading trace points... [0.055s] Sorting trace points... [1.858s] Computing alignments... [57.901s] Deallocating buffers... [0.043s] Loading trace points... [0.069s] Sorting trace points... [1.485s] Computing alignments... [59.124s] Deallocating buffers... [0.047s] Loading trace points... [0.081s] Sorting trace points... [1.49s] Computing alignments... [57.813s] Deallocating buffers... [0.045s] Loading trace points... [0.073s] Sorting trace points... [1.331s] Computing alignments... [56.899s] Deallocating buffers... [0.046s] Loading trace points... [0.119s] Sorting trace points... [1.513s] Computing alignments... [57.117s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [1.511s] Computing alignments... [57.163s] Deallocating buffers... [0.049s] Loading trace points... [0s] [966.714s] Deallocating reference... [0.089s] Loading reference sequences... [30.071s] Masking reference... [30.907s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.93s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.191s] Building query seed array... [2.138s] Computing hash join... [5.952s] Masking low complexity seeds... [0.378s] Searching alignments... [466.821s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.525s] Building query seed array... [2.696s] Computing hash join... [5.68s] Masking low complexity seeds... [0.208s] Searching alignments... [195.586s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.029s] Building query seed array... [2.728s] Computing hash join... [5.024s] Masking low complexity seeds... [0.212s] Searching alignments... [147.933s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.44s] Building query seed array... [2.212s] Computing hash join... [4.937s] Masking low complexity seeds... [0.213s] Searching alignments... [147.939s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.291s] Building query seed array... [2.063s] Computing hash join... [4.772s] Masking low complexity seeds... [0.202s] Searching alignments... [207.238s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.623s] Building query seed array... [2.305s] Computing hash join... [4.908s] Masking low complexity seeds... [0.197s] Searching alignments... [166.237s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.744s] Building query seed array... [2.46s] Computing hash join... [5.18s] Masking low complexity seeds... [0.21s] Searching alignments... [121.684s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.791s] Building query seed array... [2.125s] Computing hash join... [4.8s] Masking low complexity seeds... [0.207s] Searching alignments... [127.079s] Deallocating memory... [0s] Deallocating buffers... [1.266s] Clearing query masking... [1.408s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.541s] Sorting trace points... [1.845s] Computing alignments... [57.26s] Deallocating buffers... [0.069s] Loading trace points... [0s] Sorting trace points... [1.352s] Computing alignments... [59.551s] Deallocating buffers... [0.058s] Loading trace points... [0.108s] Sorting trace points... [1.347s] Computing alignments... [58.43s] Deallocating buffers... [0.061s] Loading trace points... [0.066s] Sorting trace points... [1.419s] Computing alignments... [59.669s] Deallocating buffers... [0.065s] Loading trace points... [0.071s] Sorting trace points... [1.485s] Computing alignments... [57.129s] Deallocating buffers... [0.054s] Loading trace points... [0.104s] Sorting trace points... [1.332s] Computing alignments... [56.892s] Deallocating buffers... [0.067s] Loading trace points... [0.071s] Sorting trace points... [1.359s] Computing alignments... [56.84s] Deallocating buffers... [0.052s] Loading trace points... [0.122s] Sorting trace points... [1.544s] Computing alignments... [59.199s] Deallocating buffers... [0.056s] Loading trace points... [0.08s] Sorting trace points... [1.446s] Computing alignments... [56.523s] Deallocating buffers... [0.059s] Loading trace points... [0.06s] Sorting trace points... [1.452s] Computing alignments... [59.392s] Deallocating buffers... [0.057s] Loading trace points... [0.06s] Sorting trace points... [1.867s] Computing alignments... [57.33s] Deallocating buffers... [0.064s] Loading trace points... [0.077s] Sorting trace points... [1.411s] Computing alignments... [58.795s] Deallocating buffers... [0.058s] Loading trace points... [0.056s] Sorting trace points... [1.832s] Computing alignments... [57.732s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [1.745s] Computing alignments... [55.88s] Deallocating buffers... [0.06s] Loading trace points... [0.054s] Sorting trace points... [1.781s] Computing alignments... [56.859s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [1.824s] Computing alignments... [56.936s] Deallocating buffers... [0.062s] Loading trace points... [0s] [961.098s] Deallocating reference... [0.073s] Loading reference sequences... [34.007s] Masking reference... [31.03s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.274s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.075s] Building query seed array... [2.121s] Computing hash join... [5.482s] Masking low complexity seeds... [0.224s] Searching alignments... [461.884s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.544s] Building query seed array... [2.822s] Computing hash join... [5.724s] Masking low complexity seeds... [0.21s] Searching alignments... [193.522s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.55s] Building query seed array... [2.601s] Computing hash join... [5.144s] Masking low complexity seeds... [0.208s] Searching alignments... [150.969s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.262s] Building query seed array... [2.37s] Computing hash join... [5.291s] Masking low complexity seeds... [0.216s] Searching alignments... [149.493s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.043s] Building query seed array... [2.1s] Computing hash join... [4.715s] Masking low complexity seeds... [0.197s] Searching alignments... [215.547s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.77s] Building query seed array... [2.31s] Computing hash join... [5.523s] Masking low complexity seeds... [0.257s] Searching alignments... [165.716s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.371s] Building query seed array... [2.494s] Computing hash join... [4.808s] Masking low complexity seeds... [0.206s] Searching alignments... [122.861s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.938s] Building query seed array... [2.098s] Computing hash join... [5.323s] Masking low complexity seeds... [0.209s] Searching alignments... [127.867s] Deallocating memory... [0s] Deallocating buffers... [0.718s] Clearing query masking... [1.362s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.23s] Sorting trace points... [1.889s] Computing alignments... [56.676s] Deallocating buffers... [0.041s] Loading trace points... [0.059s] Sorting trace points... [1.834s] Computing alignments... [58.128s] Deallocating buffers... [0.037s] Loading trace points... [0.068s] Sorting trace points... [1.841s] Computing alignments... [57.671s] Deallocating buffers... [0.043s] Loading trace points... [0.068s] Sorting trace points... [1.869s] Computing alignments... [58.719s] Deallocating buffers... [0.036s] Loading trace points... [0.037s] Sorting trace points... [1.75s] Computing alignments... [56.426s] Deallocating buffers... [0.037s] Loading trace points... [0.071s] Sorting trace points... [1.436s] Computing alignments... [56.639s] Deallocating buffers... [0.036s] Loading trace points... [0.046s] Sorting trace points... [1.677s] Computing alignments... [56.107s] Deallocating buffers... [0.033s] Loading trace points... [0.074s] Sorting trace points... [1.873s] Computing alignments... [57.971s] Deallocating buffers... [0.038s] Loading trace points... [0.041s] Sorting trace points... [1.583s] Computing alignments... [56.152s] Deallocating buffers... [0.043s] Loading trace points... [0.069s] Sorting trace points... [1.49s] Computing alignments... [58.644s] Deallocating buffers... [0.047s] Loading trace points... [0.001s] Sorting trace points... [1.882s] Computing alignments... [57.108s] Deallocating buffers... [0.038s] Loading trace points... [0.064s] Sorting trace points... [1.545s] Computing alignments... [58.504s] Deallocating buffers... [0.035s] Loading trace points... [0.045s] Sorting trace points... [1.765s] Computing alignments... [56.768s] Deallocating buffers... [0.032s] Loading trace points... [0.076s] Sorting trace points... [1.393s] Computing alignments... [55.789s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [1.568s] Computing alignments... [56.255s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.802s] Computing alignments... [56.338s] Deallocating buffers... [0.026s] Loading trace points... [0s] [952.775s] Deallocating reference... [0.061s] Loading reference sequences... [249.575s] Masking reference... [30.917s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [33.334s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.668s] Building query seed array... [2.119s] Computing hash join... [5.447s] Masking low complexity seeds... [0.208s] Searching alignments... [453.814s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.584s] Building query seed array... [2.837s] Computing hash join... [5.725s] Masking low complexity seeds... [0.234s] Searching alignments... [195.904s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.483s] Building query seed array... [2.633s] Computing hash join... [5.524s] Masking low complexity seeds... [0.22s] Searching alignments... [145.804s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.066s] Building query seed array... [2.25s] Computing hash join... [4.895s] Masking low complexity seeds... [0.211s] Searching alignments... [148.445s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.21s] Building query seed array... [2.021s] Computing hash join... [4.909s] Masking low complexity seeds... [0.199s] Searching alignments... [213.564s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.392s] Building query seed array... [2.331s] Computing hash join... [5.362s] Masking low complexity seeds... [0.219s] Searching alignments... [165.992s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.658s] Building query seed array... [2.498s] Computing hash join... [4.861s] Masking low complexity seeds... [0.196s] Searching alignments... [122.27s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.012s] Building query seed array... [2.067s] Computing hash join... [4.957s] Masking low complexity seeds... [0.196s] Searching alignments... [125.681s] Deallocating memory... [0s] Deallocating buffers... [0.903s] Clearing query masking... [1.483s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.72s] Sorting trace points... [1.81s] Computing alignments... [60.361s] Deallocating buffers... [0.096s] Loading trace points... [0.067s] Sorting trace points... [1.837s] Computing alignments... [62.042s] Deallocating buffers... [0.07s] Loading trace points... [0.059s] Sorting trace points... [1.469s] Computing alignments... [61.414s] Deallocating buffers... [0.057s] Loading trace points... [0.085s] Sorting trace points... [1.476s] Computing alignments... [62.667s] Deallocating buffers... [0.081s] Loading trace points... [0.001s] Sorting trace points... [1.381s] Computing alignments... [60.226s] Deallocating buffers... [0.068s] Loading trace points... [0.065s] Sorting trace points... [1.409s] Computing alignments... [59.154s] Deallocating buffers... [0.076s] Loading trace points... [0.041s] Sorting trace points... [1.816s] Computing alignments... [58.791s] Deallocating buffers... [0.072s] Loading trace points... [0.06s] Sorting trace points... [1.561s] Computing alignments... [61.608s] Deallocating buffers... [0.065s] Loading trace points... [0.04s] Sorting trace points... [1.43s] Computing alignments... [59.274s] Deallocating buffers... [0.053s] Loading trace points... [0.075s] Sorting trace points... [1.757s] Computing alignments... [62.24s] Deallocating buffers... [0.071s] Loading trace points... [0.065s] Sorting trace points... [1.543s] Computing alignments... [60.343s] Deallocating buffers... [0.068s] Loading trace points... [0.079s] Sorting trace points... [1.471s] Computing alignments... [61.556s] Deallocating buffers... [0.074s] Loading trace points... [0.081s] Sorting trace points... [1.661s] Computing alignments... [60.041s] Deallocating buffers... [0.062s] Loading trace points... [0.103s] Sorting trace points... [1.353s] Computing alignments... [58.468s] Deallocating buffers... [0.063s] Loading trace points... [0.087s] Sorting trace points... [1.473s] Computing alignments... [59.73s] Deallocating buffers... [0.067s] Loading trace points... [0s] Sorting trace points... [1.384s] Computing alignments... [59.576s] Deallocating buffers... [0.05s] Loading trace points... [0s] [1004.15s] Deallocating reference... [0.069s] Loading reference sequences... [256.387s] Masking reference... [32.172s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.386s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.267s] Building query seed array... [2.106s] Computing hash join... [5.521s] Masking low complexity seeds... [0.211s] Searching alignments... [459.566s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.307s] Building query seed array... [2.831s] Computing hash join... [5.87s] Masking low complexity seeds... [0.214s] Searching alignments... [199.112s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.616s] Building query seed array... [2.619s] Computing hash join... [5.186s] Masking low complexity seeds... [0.207s] Searching alignments... [146.972s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.336s] Building query seed array... [2.29s] Computing hash join... [5.069s] Masking low complexity seeds... [0.214s] Searching alignments... [148.546s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.479s] Building query seed array... [1.962s] Computing hash join... [5.13s] Masking low complexity seeds... [0.202s] Searching alignments... [210.3s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.427s] Building query seed array... [2.181s] Computing hash join... [4.987s] Masking low complexity seeds... [0.198s] Searching alignments... [163.754s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.666s] Building query seed array... [2.454s] Computing hash join... [5.765s] Masking low complexity seeds... [0.197s] Searching alignments... [122.763s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.319s] Building query seed array... [2.057s] Computing hash join... [4.999s] Masking low complexity seeds... [0.224s] Searching alignments... [124.815s] Deallocating memory... [0s] Deallocating buffers... [1.117s] Clearing query masking... [1.4s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.358s] Sorting trace points... [1.288s] Computing alignments... [57.827s] Deallocating buffers... [0.035s] Loading trace points... [0.047s] Sorting trace points... [1.812s] Computing alignments... [59.746s] Deallocating buffers... [0.047s] Loading trace points... [0.099s] Sorting trace points... [1.85s] Computing alignments... [59.193s] Deallocating buffers... [0.021s] Loading trace points... [0.092s] Sorting trace points... [1.859s] Computing alignments... [59.504s] Deallocating buffers... [0.039s] Loading trace points... [0.075s] Sorting trace points... [1.719s] Computing alignments... [57.364s] Deallocating buffers... [0.048s] Loading trace points... [0.064s] Sorting trace points... [1.823s] Computing alignments... [57.06s] Deallocating buffers... [0.032s] Loading trace points... [0.082s] Sorting trace points... [1.469s] Computing alignments... [56.722s] Deallocating buffers... [0.034s] Loading trace points... [0.042s] Sorting trace points... [1.774s] Computing alignments... [59.95s] Deallocating buffers... [0.038s] Loading trace points... [0.091s] Sorting trace points... [1.716s] Computing alignments... [57.94s] Deallocating buffers... [0.036s] Loading trace points... [0.038s] Sorting trace points... [1.521s] Computing alignments... [59.834s] Deallocating buffers... [0.035s] Loading trace points... [0.066s] Sorting trace points... [1.511s] Computing alignments... [58.041s] Deallocating buffers... [0.033s] Loading trace points... [0.062s] Sorting trace points... [1.423s] Computing alignments... [59.241s] Deallocating buffers... [0.034s] Loading trace points... [0.073s] Sorting trace points... [1.752s] Computing alignments... [58.356s] Deallocating buffers... [0.04s] Loading trace points... [0.047s] Sorting trace points... [1.832s] Computing alignments... [56.322s] Deallocating buffers... [0.037s] Loading trace points... [0.094s] Sorting trace points... [1.842s] Computing alignments... [57.93s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [1.779s] Computing alignments... [57.945s] Deallocating buffers... [0.035s] Loading trace points... [0s] [972.045s] Deallocating reference... [0.097s] Loading reference sequences... [29.352s] Masking reference... [30.896s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.059s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.079s] Building query seed array... [2.042s] Computing hash join... [5.402s] Masking low complexity seeds... [0.208s] Searching alignments... [455.008s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.37s] Building query seed array... [2.861s] Computing hash join... [5.914s] Masking low complexity seeds... [0.217s] Searching alignments... [194.97s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.561s] Building query seed array... [2.523s] Computing hash join... [5.277s] Masking low complexity seeds... [0.204s] Searching alignments... [147.577s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.088s] Building query seed array... [2.34s] Computing hash join... [5.176s] Masking low complexity seeds... [0.207s] Searching alignments... [146.19s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.372s] Building query seed array... [2.079s] Computing hash join... [4.762s] Masking low complexity seeds... [0.194s] Searching alignments... [211.126s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.197s] Building query seed array... [2.243s] Computing hash join... [4.795s] Masking low complexity seeds... [0.205s] Searching alignments... [166.196s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.159s] Building query seed array... [2.382s] Computing hash join... [5.449s] Masking low complexity seeds... [0.203s] Searching alignments... [121.505s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.258s] Building query seed array... [2.031s] Computing hash join... [5.007s] Masking low complexity seeds... [0.199s] Searching alignments... [123.685s] Deallocating memory... [0s] Deallocating buffers... [0.92s] Clearing query masking... [1.396s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.492s] Sorting trace points... [1.901s] Computing alignments... [58.19s] Deallocating buffers... [0.032s] Loading trace points... [0.061s] Sorting trace points... [1.579s] Computing alignments... [60.273s] Deallocating buffers... [0.04s] Loading trace points... [0.09s] Sorting trace points... [1.378s] Computing alignments... [59.553s] Deallocating buffers... [0.034s] Loading trace points... [0.082s] Sorting trace points... [1.98s] Computing alignments... [60.438s] Deallocating buffers... [0.04s] Loading trace points... [0.074s] Sorting trace points... [1.524s] Computing alignments... [57.894s] Deallocating buffers... [0.042s] Loading trace points... [0.057s] Sorting trace points... [1.469s] Computing alignments... [57.316s] Deallocating buffers... [0.037s] Loading trace points... [0.066s] Sorting trace points... [1.791s] Computing alignments... [57.307s] Deallocating buffers... [0.032s] Loading trace points... [0.043s] Sorting trace points... [1.985s] Computing alignments... [60.595s] Deallocating buffers... [0.028s] Loading trace points... [0.056s] Sorting trace points... [1.751s] Computing alignments... [58.128s] Deallocating buffers... [0.04s] Loading trace points... [0.693s] Sorting trace points... [1.551s] Computing alignments... [60.133s] Deallocating buffers... [0.034s] Loading trace points... [0.056s] Sorting trace points... [1.922s] Computing alignments... [58.861s] Deallocating buffers... [0.042s] Loading trace points... [0.083s] Sorting trace points... [1.942s] Computing alignments... [59.629s] Deallocating buffers... [0.034s] Loading trace points... [0.06s] Sorting trace points... [1.402s] Computing alignments... [58.713s] Deallocating buffers... [0.042s] Loading trace points... [0.057s] Sorting trace points... [1.795s] Computing alignments... [56.867s] Deallocating buffers... [0.032s] Loading trace points... [0.074s] Sorting trace points... [1.435s] Computing alignments... [58.541s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.776s] Computing alignments... [58.872s] Deallocating buffers... [0.033s] Loading trace points... [0s] [980.249s] Deallocating reference... [0.097s] Loading reference sequences... [31.25s] Masking reference... [30.97s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.721s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.192s] Building query seed array... [2.113s] Computing hash join... [5.446s] Masking low complexity seeds... [0.23s] Searching alignments... [456.135s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.471s] Building query seed array... [2.727s] Computing hash join... [5.488s] Masking low complexity seeds... [0.216s] Searching alignments... [195.521s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.532s] Building query seed array... [2.672s] Computing hash join... [5.402s] Masking low complexity seeds... [0.213s] Searching alignments... [147.111s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.237s] Building query seed array... [2.177s] Computing hash join... [5.457s] Masking low complexity seeds... [0.213s] Searching alignments... [146.325s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.118s] Building query seed array... [2.055s] Computing hash join... [4.805s] Masking low complexity seeds... [0.194s] Searching alignments... [205.284s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.692s] Building query seed array... [2.358s] Computing hash join... [4.808s] Masking low complexity seeds... [0.189s] Searching alignments... [167.499s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.047s] Building query seed array... [2.387s] Computing hash join... [5.142s] Masking low complexity seeds... [0.234s] Searching alignments... [121.713s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.914s] Building query seed array... [2.084s] Computing hash join... [5.323s] Masking low complexity seeds... [0.202s] Searching alignments... [124.619s] Deallocating memory... [0s] Deallocating buffers... [0.699s] Clearing query masking... [1.539s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.66s] Sorting trace points... [1.784s] Computing alignments... [55.879s] Deallocating buffers... [0.033s] Loading trace points... [0.002s] Sorting trace points... [1.329s] Computing alignments... [57.279s] Deallocating buffers... [0.038s] Loading trace points... [0.087s] Sorting trace points... [1.684s] Computing alignments... [57.001s] Deallocating buffers... [0.033s] Loading trace points... [0.076s] Sorting trace points... [1.44s] Computing alignments... [57.786s] Deallocating buffers... [0.041s] Loading trace points... [0.06s] Sorting trace points... [1.491s] Computing alignments... [55.624s] Deallocating buffers... [0.036s] Loading trace points... [0.045s] Sorting trace points... [1.703s] Computing alignments... [55.287s] Deallocating buffers... [0.032s] Loading trace points... [0.073s] Sorting trace points... [1.844s] Computing alignments... [55.108s] Deallocating buffers... [0.043s] Loading trace points... [0.072s] Sorting trace points... [1.897s] Computing alignments... [57.097s] Deallocating buffers... [0.038s] Loading trace points... [0.069s] Sorting trace points... [1.802s] Computing alignments... [55.427s] Deallocating buffers... [0.041s] Loading trace points... [0.106s] Sorting trace points... [1.438s] Computing alignments... [57.828s] Deallocating buffers... [0.035s] Loading trace points... [0.066s] Sorting trace points... [1.36s] Computing alignments... [56.625s] Deallocating buffers... [0.041s] Loading trace points... [0.068s] Sorting trace points... [1.375s] Computing alignments... [57.289s] Deallocating buffers... [0.036s] Loading trace points... [0.046s] Sorting trace points... [1.542s] Computing alignments... [56.011s] Deallocating buffers... [0.041s] Loading trace points... [0.002s] Sorting trace points... [1.479s] Computing alignments... [54.665s] Deallocating buffers... [0.033s] Loading trace points... [0.214s] Sorting trace points... [1.397s] Computing alignments... [55.397s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.313s] Computing alignments... [56.149s] Deallocating buffers... [0.025s] Loading trace points... [0s] [936.673s] Deallocating reference... [0.095s] Loading reference sequences... [30.435s] Masking reference... [30.878s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.016s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.57s] Building query seed array... [2.158s] Computing hash join... [5.521s] Masking low complexity seeds... [0.207s] Searching alignments... [468.082s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.527s] Building query seed array... [2.799s] Computing hash join... [5.609s] Masking low complexity seeds... [0.254s] Searching alignments... [197.875s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.943s] Building query seed array... [2.612s] Computing hash join... [5.519s] Masking low complexity seeds... [0.209s] Searching alignments... [152.426s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.522s] Building query seed array... [2.195s] Computing hash join... [5.348s] Masking low complexity seeds... [0.218s] Searching alignments... [145.815s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.131s] Building query seed array... [2.026s] Computing hash join... [5.337s] Masking low complexity seeds... [0.243s] Searching alignments... [209.672s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.471s] Building query seed array... [2.325s] Computing hash join... [5.116s] Masking low complexity seeds... [0.192s] Searching alignments... [168.587s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.33s] Building query seed array... [2.236s] Computing hash join... [4.933s] Masking low complexity seeds... [0.202s] Searching alignments... [123.853s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.261s] Building query seed array... [2.093s] Computing hash join... [4.922s] Masking low complexity seeds... [0.203s] Searching alignments... [128.956s] Deallocating memory... [0s] Deallocating buffers... [0.766s] Clearing query masking... [1.374s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.53s] Sorting trace points... [1.846s] Computing alignments... [56.956s] Deallocating buffers... [0.083s] Loading trace points... [0.056s] Sorting trace points... [1.838s] Computing alignments... [58.895s] Deallocating buffers... [0.072s] Loading trace points... [0.075s] Sorting trace points... [1.801s] Computing alignments... [57.755s] Deallocating buffers... [0.072s] Loading trace points... [0.08s] Sorting trace points... [1.658s] Computing alignments... [58.916s] Deallocating buffers... [0.07s] Loading trace points... [0.106s] Sorting trace points... [1.851s] Computing alignments... [56.688s] Deallocating buffers... [0.058s] Loading trace points... [0.066s] Sorting trace points... [1.537s] Computing alignments... [56.46s] Deallocating buffers... [0.07s] Loading trace points... [0.059s] Sorting trace points... [1.35s] Computing alignments... [56.454s] Deallocating buffers... [0.059s] Loading trace points... [0.052s] Sorting trace points... [1.848s] Computing alignments... [58.102s] Deallocating buffers... [0.07s] Loading trace points... [0.073s] Sorting trace points... [1.436s] Computing alignments... [55.483s] Deallocating buffers... [0.059s] Loading trace points... [0.043s] Sorting trace points... [1.494s] Computing alignments... [58.642s] Deallocating buffers... [0.064s] Loading trace points... [0.058s] Sorting trace points... [1.434s] Computing alignments... [57.509s] Deallocating buffers... [0.064s] Loading trace points... [0.078s] Sorting trace points... [1.439s] Computing alignments... [58.283s] Deallocating buffers... [0.058s] Loading trace points... [0.078s] Sorting trace points... [1.664s] Computing alignments... [57.35s] Deallocating buffers... [0.05s] Loading trace points... [0.048s] Sorting trace points... [1.786s] Computing alignments... [55.037s] Deallocating buffers... [0.065s] Loading trace points... [0.074s] Sorting trace points... [1.832s] Computing alignments... [55.912s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [1.806s] Computing alignments... [56.568s] Deallocating buffers... [0.063s] Loading trace points... [0s] [953.261s] Deallocating reference... [0.09s] Loading reference sequences... [29.189s] Masking reference... [30.875s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.231s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.343s] Building query seed array... [2.055s] Computing hash join... [5.837s] Masking low complexity seeds... [0.214s] Searching alignments... [464.928s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.382s] Building query seed array... [2.908s] Computing hash join... [5.388s] Masking low complexity seeds... [0.213s] Searching alignments... [192.704s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.031s] Building query seed array... [2.631s] Computing hash join... [4.915s] Masking low complexity seeds... [0.214s] Searching alignments... [148.874s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.166s] Building query seed array... [2.146s] Computing hash join... [5.044s] Masking low complexity seeds... [0.21s] Searching alignments... [147.919s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.625s] Building query seed array... [2.013s] Computing hash join... [4.882s] Masking low complexity seeds... [0.195s] Searching alignments... [210.384s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.626s] Building query seed array... [2.362s] Computing hash join... [5.62s] Masking low complexity seeds... [0.203s] Searching alignments... [164.25s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.452s] Building query seed array... [2.461s] Computing hash join... [4.938s] Masking low complexity seeds... [0.207s] Searching alignments... [121.756s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.695s] Building query seed array... [2.073s] Computing hash join... [4.869s] Masking low complexity seeds... [0.198s] Searching alignments... [125.018s] Deallocating memory... [0s] Deallocating buffers... [1.283s] Clearing query masking... [1.403s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.65s] Sorting trace points... [1.776s] Computing alignments... [51.382s] Deallocating buffers... [0.045s] Loading trace points... [0.049s] Sorting trace points... [1.87s] Computing alignments... [52.208s] Deallocating buffers... [0.038s] Loading trace points... [0.09s] Sorting trace points... [1.592s] Computing alignments... [52.138s] Deallocating buffers... [0.043s] Loading trace points... [0.082s] Sorting trace points... [1.419s] Computing alignments... [53.631s] Deallocating buffers... [0.036s] Loading trace points... [0.069s] Sorting trace points... [1.546s] Computing alignments... [51.451s] Deallocating buffers... [0.045s] Loading trace points... [0.076s] Sorting trace points... [1.756s] Computing alignments... [50.566s] Deallocating buffers... [0.032s] Loading trace points... [0.059s] Sorting trace points... [1.874s] Computing alignments... [51.107s] Deallocating buffers... [0.038s] Loading trace points... [0.039s] Sorting trace points... [1.907s] Computing alignments... [53.291s] Deallocating buffers... [0.022s] Loading trace points... [0.073s] Sorting trace points... [1.774s] Computing alignments... [51.442s] Deallocating buffers... [0.032s] Loading trace points... [0.001s] Sorting trace points... [1.834s] Computing alignments... [52.991s] Deallocating buffers... [0.032s] Loading trace points... [0.067s] Sorting trace points... [1.652s] Computing alignments... [52.225s] Deallocating buffers... [0.034s] Loading trace points... [0.062s] Sorting trace points... [1.85s] Computing alignments... [53.285s] Deallocating buffers... [0.033s] Loading trace points... [0.063s] Sorting trace points... [1.839s] Computing alignments... [51.26s] Deallocating buffers... [0.037s] Loading trace points... [0.051s] Sorting trace points... [1.898s] Computing alignments... [51.105s] Deallocating buffers... [0.026s] Loading trace points... [0.058s] Sorting trace points... [1.422s] Computing alignments... [51.682s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.54s] Computing alignments... [51.835s] Deallocating buffers... [0.036s] Loading trace points... [0s] [870.348s] Deallocating reference... [0.087s] Loading reference sequences... [29.371s] Masking reference... [30.865s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.924s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.458s] Building query seed array... [2.101s] Computing hash join... [5.718s] Masking low complexity seeds... [0.208s] Searching alignments... [454.519s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.652s] Building query seed array... [2.897s] Computing hash join... [5.582s] Masking low complexity seeds... [0.212s] Searching alignments... [197.799s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.597s] Building query seed array... [2.726s] Computing hash join... [5.333s] Masking low complexity seeds... [0.24s] Searching alignments... [146.759s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.528s] Building query seed array... [2.274s] Computing hash join... [5.119s] Masking low complexity seeds... [0.205s] Searching alignments... [146.713s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.686s] Building query seed array... [2.08s] Computing hash join... [5.092s] Masking low complexity seeds... [0.219s] Searching alignments... [214.717s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.523s] Building query seed array... [2.258s] Computing hash join... [5.502s] Masking low complexity seeds... [0.192s] Searching alignments... [164.221s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.423s] Building query seed array... [2.384s] Computing hash join... [4.984s] Masking low complexity seeds... [0.232s] Searching alignments... [123.247s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.238s] Building query seed array... [2.086s] Computing hash join... [5.503s] Masking low complexity seeds... [0.201s] Searching alignments... [127.729s] Deallocating memory... [0s] Deallocating buffers... [1.218s] Clearing query masking... [1.434s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.527s] Sorting trace points... [1.864s] Computing alignments... [60.278s] Deallocating buffers... [0.071s] Loading trace points... [0.058s] Sorting trace points... [1.584s] Computing alignments... [63.258s] Deallocating buffers... [0.07s] Loading trace points... [0.054s] Sorting trace points... [1.487s] Computing alignments... [62.234s] Deallocating buffers... [0.047s] Loading trace points... [0.069s] Sorting trace points... [1.577s] Computing alignments... [63.915s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [1.841s] Computing alignments... [60.824s] Deallocating buffers... [0.045s] Loading trace points... [0.08s] Sorting trace points... [1.608s] Computing alignments... [60.313s] Deallocating buffers... [0.062s] Loading trace points... [0.001s] Sorting trace points... [1.388s] Computing alignments... [60.048s] Deallocating buffers... [0.047s] Loading trace points... [0.066s] Sorting trace points... [1.37s] Computing alignments... [62.816s] Deallocating buffers... [0.051s] Loading trace points... [0.005s] Sorting trace points... [1.605s] Computing alignments... [59.785s] Deallocating buffers... [0.036s] Loading trace points... [0.055s] Sorting trace points... [1.377s] Computing alignments... [62.225s] Deallocating buffers... [0.053s] Loading trace points... [0.081s] Sorting trace points... [1.805s] Computing alignments... [61.067s] Deallocating buffers... [0.049s] Loading trace points... [0.102s] Sorting trace points... [1.793s] Computing alignments... [62.764s] Deallocating buffers... [0.053s] Loading trace points... [0.1s] Sorting trace points... [1.645s] Computing alignments... [60.919s] Deallocating buffers... [0.047s] Loading trace points... [0.073s] Sorting trace points... [1.879s] Computing alignments... [59.624s] Deallocating buffers... [0.046s] Loading trace points... [1.02s] Sorting trace points... [1.709s] Computing alignments... [60.289s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [1.78s] Computing alignments... [60.639s] Deallocating buffers... [0.047s] Loading trace points... [0s] [1019.56s] Deallocating reference... [0.071s] Loading reference sequences... [250.453s] Masking reference... [31.069s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.76s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.431s] Building query seed array... [2.056s] Computing hash join... [5.938s] Masking low complexity seeds... [0.219s] Searching alignments... [456.086s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.392s] Building query seed array... [2.863s] Computing hash join... [5.681s] Masking low complexity seeds... [0.225s] Searching alignments... [198.233s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.459s] Building query seed array... [2.603s] Computing hash join... [5.165s] Masking low complexity seeds... [0.207s] Searching alignments... [149.074s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.44s] Building query seed array... [2.239s] Computing hash join... [5.74s] Masking low complexity seeds... [0.235s] Searching alignments... [146.217s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.479s] Building query seed array... [2.072s] Computing hash join... [4.911s] Masking low complexity seeds... [0.209s] Searching alignments... [210.841s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.13s] Building query seed array... [2.389s] Computing hash join... [4.879s] Masking low complexity seeds... [0.204s] Searching alignments... [165.126s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.712s] Building query seed array... [2.317s] Computing hash join... [4.967s] Masking low complexity seeds... [0.198s] Searching alignments... [123.278s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.472s] Building query seed array... [2.092s] Computing hash join... [4.835s] Masking low complexity seeds... [0.207s] Searching alignments... [126.69s] Deallocating memory... [0s] Deallocating buffers... [1.455s] Clearing query masking... [1.563s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.596s] Sorting trace points... [1.88s] Computing alignments... [59.3s] Deallocating buffers... [0.063s] Loading trace points... [0.063s] Sorting trace points... [1.345s] Computing alignments... [61.989s] Deallocating buffers... [0.063s] Loading trace points... [0.071s] Sorting trace points... [1.506s] Computing alignments... [60.774s] Deallocating buffers... [0.048s] Loading trace points... [0.075s] Sorting trace points... [1.666s] Computing alignments... [61.476s] Deallocating buffers... [0.057s] Loading trace points... [0.06s] Sorting trace points... [1.874s] Computing alignments... [59.005s] Deallocating buffers... [0.049s] Loading trace points... [0.062s] Sorting trace points... [1.805s] Computing alignments... [58.8s] Deallocating buffers... [0.058s] Loading trace points... [0.062s] Sorting trace points... [1.606s] Computing alignments... [58.823s] Deallocating buffers... [0.049s] Loading trace points... [0.105s] Sorting trace points... [1.918s] Computing alignments... [61.542s] Deallocating buffers... [0.054s] Loading trace points... [0.052s] Sorting trace points... [1.404s] Computing alignments... [58.653s] Deallocating buffers... [0.052s] Loading trace points... [0.072s] Sorting trace points... [1.447s] Computing alignments... [61.358s] Deallocating buffers... [0.054s] Loading trace points... [0.053s] Sorting trace points... [1.557s] Computing alignments... [59.02s] Deallocating buffers... [0.051s] Loading trace points... [0.074s] Sorting trace points... [1.715s] Computing alignments... [60.648s] Deallocating buffers... [0.044s] Loading trace points... [0.043s] Sorting trace points... [1.771s] Computing alignments... [59.322s] Deallocating buffers... [0.056s] Loading trace points... [0.069s] Sorting trace points... [1.632s] Computing alignments... [57.833s] Deallocating buffers... [0.044s] Loading trace points... [0.051s] Sorting trace points... [1.765s] Computing alignments... [59.234s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [1.81s] Computing alignments... [58.583s] Deallocating buffers... [0.055s] Loading trace points... [0s] [994.524s] Deallocating reference... [0.09s] Loading reference sequences... [31.503s] Masking reference... [30.89s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.77s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.173s] Building query seed array... [1.989s] Computing hash join... [5.936s] Masking low complexity seeds... [0.212s] Searching alignments... [461.695s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.782s] Building query seed array... [2.639s] Computing hash join... [5.687s] Masking low complexity seeds... [0.216s] Searching alignments... [195.125s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.696s] Building query seed array... [2.538s] Computing hash join... [5.861s] Masking low complexity seeds... [0.212s] Searching alignments... [146.461s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.369s] Building query seed array... [2.145s] Computing hash join... [5.084s] Masking low complexity seeds... [0.225s] Searching alignments... [148.529s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.297s] Building query seed array... [2.073s] Computing hash join... [5.134s] Masking low complexity seeds... [0.195s] Searching alignments... [209.713s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.055s] Building query seed array... [2.393s] Computing hash join... [4.89s] Masking low complexity seeds... [0.212s] Searching alignments... [163.573s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.75s] Building query seed array... [2.296s] Computing hash join... [5.065s] Masking low complexity seeds... [0.195s] Searching alignments... [123.53s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.809s] Building query seed array... [2.174s] Computing hash join... [4.852s] Masking low complexity seeds... [0.211s] Searching alignments... [126.131s] Deallocating memory... [0s] Deallocating buffers... [1.52s] Clearing query masking... [1.46s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.933s] Sorting trace points... [1.816s] Computing alignments... [56s] Deallocating buffers... [0.033s] Loading trace points... [0.068s] Sorting trace points... [1.789s] Computing alignments... [57.311s] Deallocating buffers... [0.035s] Loading trace points... [0.066s] Sorting trace points... [1.912s] Computing alignments... [56.85s] Deallocating buffers... [0.033s] Loading trace points... [0.078s] Sorting trace points... [1.865s] Computing alignments... [58.379s] Deallocating buffers... [0.035s] Loading trace points... [0.091s] Sorting trace points... [1.601s] Computing alignments... [55.949s] Deallocating buffers... [0.035s] Loading trace points... [0.052s] Sorting trace points... [1.795s] Computing alignments... [55.411s] Deallocating buffers... [0.032s] Loading trace points... [0.086s] Sorting trace points... [1.808s] Computing alignments... [55.438s] Deallocating buffers... [0.031s] Loading trace points... [0.065s] Sorting trace points... [1.89s] Computing alignments... [58.017s] Deallocating buffers... [0.033s] Loading trace points... [0.098s] Sorting trace points... [1.706s] Computing alignments... [55.654s] Deallocating buffers... [0.037s] Loading trace points... [0.083s] Sorting trace points... [1.866s] Computing alignments... [58.462s] Deallocating buffers... [0.033s] Loading trace points... [0.086s] Sorting trace points... [1.819s] Computing alignments... [56.168s] Deallocating buffers... [0.048s] Loading trace points... [0.101s] Sorting trace points... [1.756s] Computing alignments... [57.675s] Deallocating buffers... [0.038s] Loading trace points... [0.15s] Sorting trace points... [1.84s] Computing alignments... [56.301s] Deallocating buffers... [0.041s] Loading trace points... [0.058s] Sorting trace points... [1.815s] Computing alignments... [55.402s] Deallocating buffers... [0.037s] Loading trace points... [0.079s] Sorting trace points... [1.838s] Computing alignments... [56.021s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.396s] Computing alignments... [55.932s] Deallocating buffers... [0.035s] Loading trace points... [0s] [945.344s] Deallocating reference... [0.075s] Loading reference sequences... [23.503s] Masking reference... [26.073s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.006s] Building reference histograms... [26.299s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.246s] Building query seed array... [2.047s] Computing hash join... [4.147s] Masking low complexity seeds... [0.191s] Searching alignments... [367.987s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.21s] Building query seed array... [2.259s] Computing hash join... [4.488s] Masking low complexity seeds... [0.197s] Searching alignments... [158.805s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.997s] Building query seed array... [2.317s] Computing hash join... [4.092s] Masking low complexity seeds... [0.195s] Searching alignments... [118.181s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.191s] Building query seed array... [1.931s] Computing hash join... [4.038s] Masking low complexity seeds... [0.188s] Searching alignments... [118.624s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.246s] Building query seed array... [1.824s] Computing hash join... [3.883s] Masking low complexity seeds... [0.177s] Searching alignments... [167.748s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.335s] Building query seed array... [2.108s] Computing hash join... [3.922s] Masking low complexity seeds... [0.179s] Searching alignments... [133.643s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.198s] Building query seed array... [2.146s] Computing hash join... [4.033s] Masking low complexity seeds... [0.182s] Searching alignments... [99.759s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.355s] Building query seed array... [1.903s] Computing hash join... [3.993s] Masking low complexity seeds... [0.179s] Searching alignments... [101.915s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.451s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.076s] Sorting trace points... [1.149s] Computing alignments... [43.854s] Deallocating buffers... [0.021s] Loading trace points... [0.063s] Sorting trace points... [1.382s] Computing alignments... [45.098s] Deallocating buffers... [0.033s] Loading trace points... [0.071s] Sorting trace points... [1.428s] Computing alignments... [44.536s] Deallocating buffers... [0.033s] Loading trace points... [0.066s] Sorting trace points... [1.281s] Computing alignments... [45.408s] Deallocating buffers... [0.029s] Loading trace points... [0.085s] Sorting trace points... [1.149s] Computing alignments... [43.418s] Deallocating buffers... [0.029s] Loading trace points... [0.082s] Sorting trace points... [1.114s] Computing alignments... [43.744s] Deallocating buffers... [0.028s] Loading trace points... [0.053s] Sorting trace points... [1.432s] Computing alignments... [43.551s] Deallocating buffers... [0.03s] Loading trace points... [0.071s] Sorting trace points... [1.538s] Computing alignments... [44.989s] Deallocating buffers... [0.027s] Loading trace points... [0.051s] Sorting trace points... [1.47s] Computing alignments... [43.311s] Deallocating buffers... [0.027s] Loading trace points... [0.065s] Sorting trace points... [1.441s] Computing alignments... [45.153s] Deallocating buffers... [0.027s] Loading trace points... [0.052s] Sorting trace points... [1.541s] Computing alignments... [44.141s] Deallocating buffers... [0.031s] Loading trace points... [0.069s] Sorting trace points... [1.136s] Computing alignments... [45.346s] Deallocating buffers... [0.029s] Loading trace points... [0.071s] Sorting trace points... [1.435s] Computing alignments... [43.719s] Deallocating buffers... [0.03s] Loading trace points... [0.081s] Sorting trace points... [1.446s] Computing alignments... [43.12s] Deallocating buffers... [0.026s] Loading trace points... [0.141s] Sorting trace points... [1.349s] Computing alignments... [43.452s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.527s] Computing alignments... [44.137s] Deallocating buffers... [0.026s] Loading trace points... [0s] [738.5s] Deallocating reference... [0.068s] Loading reference sequences... [0.067s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [3806.57s] [3806.57s] Deallocating queries... [0.057s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.788s] [3.792s] Closing the database... [0s] Cleaning up... [0s] Total time = 43096.3s Reported 3880590807 pairwise alignments, 3880590807 HSPs. 4982296 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-01.trimmed.R1.fastq.gz complete: CH05-01.trimmed.R1.blastx.meganized.daa Now MEGANizing CH05-01.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-01.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (298.2s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,991.6s) Total reads: 4,982,296 With hits: 4,982,296 Alignments: 2,722,840,401 Assig. Taxonomy: 2,190,543 Assig. SEED: 71,595 Assig. EGGNOG: 19,192 Assig. GTDB: 166,826 Assig. EC: 348,087 Assig. INTERPRO2GO: 989,139 MinSupport set to: 2491 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 4,839 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.1s) Min-supp. changes: 3,157 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5.6s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 171 Class. SEED: 477 Class. EGGNOG: 1,569 Class. GTDB: 39 Class. EC: 2,251 Class. INTERPRO2GO: 8,571 Total time: 6,317s Peak memory: 38 of 195.3G MEGANization of CH05-01.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-01.trimmed.R2.fastq.gz... 4a989ca71ec138aec73acea7c8745d76 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-01.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-01.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.331s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.705s] Opening the output file... [0s] Loading query sequences... [88.319s] Masking queries... [23.922s] Algorithm: Double-indexed Building query histograms... [17.72s] Loading reference sequences... [29.063s] Masking reference... [32.106s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.107s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.295s] Building query seed array... [2.095s] Computing hash join... [5.676s] Masking low complexity seeds... [0.209s] Searching alignments... [482.124s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.886s] Building query seed array... [2.804s] Computing hash join... [5.573s] Masking low complexity seeds... [0.208s] Searching alignments... [201.743s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.969s] Building query seed array... [2.7s] Computing hash join... [5.579s] Masking low complexity seeds... [0.211s] Searching alignments... [150.247s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.121s] Building query seed array... [2.235s] Computing hash join... [5.528s] Masking low complexity seeds... [0.239s] Searching alignments... [148.547s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.711s] Building query seed array... [1.951s] Computing hash join... [5.073s] Masking low complexity seeds... [0.245s] Searching alignments... [225.108s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.699s] Building query seed array... [2.39s] Computing hash join... [5.254s] Masking low complexity seeds... [0.201s] Searching alignments... [172.225s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.493s] Building query seed array... [2.338s] Computing hash join... [4.842s] Masking low complexity seeds... [0.201s] Searching alignments... [127.993s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.89s] Building query seed array... [2.093s] Computing hash join... [5.161s] Masking low complexity seeds... [0.2s] Searching alignments... [132.867s] Deallocating memory... [0s] Deallocating buffers... [0.765s] Clearing query masking... [1.381s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.85s] Sorting trace points... [1.877s] Computing alignments... [56.172s] Deallocating buffers... [0.036s] Loading trace points... [0.053s] Sorting trace points... [1.565s] Computing alignments... [57.762s] Deallocating buffers... [0.023s] Loading trace points... [0.052s] Sorting trace points... [1.352s] Computing alignments... [57.056s] Deallocating buffers... [0.036s] Loading trace points... [0.077s] Sorting trace points... [1.422s] Computing alignments... [57.41s] Deallocating buffers... [0.037s] Loading trace points... [0.002s] Sorting trace points... [1.777s] Computing alignments... [56.155s] Deallocating buffers... [0.041s] Loading trace points... [0.06s] Sorting trace points... [1.703s] Computing alignments... [54.8s] Deallocating buffers... [0.041s] Loading trace points... [0.084s] Sorting trace points... [1.798s] Computing alignments... [55.509s] Deallocating buffers... [0.022s] Loading trace points... [0.057s] Sorting trace points... [1.394s] Computing alignments... [57.398s] Deallocating buffers... [0.036s] Loading trace points... [0.066s] Sorting trace points... [1.811s] Computing alignments... [55.534s] Deallocating buffers... [0.04s] Loading trace points... [0.069s] Sorting trace points... [1.673s] Computing alignments... [57.259s] Deallocating buffers... [0.034s] Loading trace points... [0.057s] Sorting trace points... [1.735s] Computing alignments... [56.355s] Deallocating buffers... [0.033s] Loading trace points... [0.036s] Sorting trace points... [1.852s] Computing alignments... [56.44s] Deallocating buffers... [0.04s] Loading trace points... [0.077s] Sorting trace points... [1.796s] Computing alignments... [54.958s] Deallocating buffers... [0.021s] Loading trace points... [0.05s] Sorting trace points... [1.837s] Computing alignments... [56.528s] Deallocating buffers... [0.032s] Loading trace points... [0.067s] Sorting trace points... [1.802s] Computing alignments... [55.641s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.787s] Computing alignments... [55.576s] Deallocating buffers... [0.037s] Loading trace points... [0s] [939.069s] Deallocating reference... [0.072s] Loading reference sequences... [29.084s] Masking reference... [31.127s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.673s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.448s] Building query seed array... [2.104s] Computing hash join... [5.729s] Masking low complexity seeds... [0.203s] Searching alignments... [469.347s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.692s] Building query seed array... [2.868s] Computing hash join... [5.626s] Masking low complexity seeds... [0.227s] Searching alignments... [198.12s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.03s] Building query seed array... [2.519s] Computing hash join... [5.239s] Masking low complexity seeds... [0.21s] Searching alignments... [151.448s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.419s] Building query seed array... [2.277s] Computing hash join... [5.422s] Masking low complexity seeds... [0.214s] Searching alignments... [146.64s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.29s] Building query seed array... [2.013s] Computing hash join... [4.916s] Masking low complexity seeds... [0.198s] Searching alignments... [216.599s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.406s] Building query seed array... [2.303s] Computing hash join... [4.776s] Masking low complexity seeds... [0.194s] Searching alignments... [171.026s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.324s] Building query seed array... [2.421s] Computing hash join... [4.951s] Masking low complexity seeds... [0.198s] Searching alignments... [124.738s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.526s] Building query seed array... [2.025s] Computing hash join... [5.004s] Masking low complexity seeds... [0.197s] Searching alignments... [130.604s] Deallocating memory... [0s] Deallocating buffers... [1.278s] Clearing query masking... [1.527s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.604s] Sorting trace points... [1.889s] Computing alignments... [58.062s] Deallocating buffers... [0.079s] Loading trace points... [0.062s] Sorting trace points... [1.868s] Computing alignments... [60.115s] Deallocating buffers... [0.057s] Loading trace points... [0.078s] Sorting trace points... [1.368s] Computing alignments... [60.157s] Deallocating buffers... [0.058s] Loading trace points... [0.051s] Sorting trace points... [1.896s] Computing alignments... [59.138s] Deallocating buffers... [0.046s] Loading trace points... [0.056s] Sorting trace points... [1.783s] Computing alignments... [58.675s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [1.438s] Computing alignments... [56.328s] Deallocating buffers... [0.056s] Loading trace points... [0.076s] Sorting trace points... [1.781s] Computing alignments... [58.044s] Deallocating buffers... [0.051s] Loading trace points... [0.062s] Sorting trace points... [1.664s] Computing alignments... [59.631s] Deallocating buffers... [0.065s] Loading trace points... [0.103s] Sorting trace points... [1.781s] Computing alignments... [57.224s] Deallocating buffers... [0.063s] Loading trace points... [0.072s] Sorting trace points... [1.713s] Computing alignments... [59.532s] Deallocating buffers... [0.057s] Loading trace points... [0.08s] Sorting trace points... [1.727s] Computing alignments... [58.492s] Deallocating buffers... [0.062s] Loading trace points... [0.087s] Sorting trace points... [1.514s] Computing alignments... [58.418s] Deallocating buffers... [0.055s] Loading trace points... [0.109s] Sorting trace points... [1.559s] Computing alignments... [57.084s] Deallocating buffers... [0.048s] Loading trace points... [0.068s] Sorting trace points... [1.507s] Computing alignments... [57.982s] Deallocating buffers... [0.057s] Loading trace points... [0.049s] Sorting trace points... [1.489s] Computing alignments... [57.743s] Deallocating buffers... [0.058s] Loading trace points... [0s] Sorting trace points... [1.488s] Computing alignments... [56.875s] Deallocating buffers... [0.059s] Loading trace points... [0s] [971.589s] Deallocating reference... [0.093s] Loading reference sequences... [31.064s] Masking reference... [32.109s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.709s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.334s] Building query seed array... [2.096s] Computing hash join... [4.993s] Masking low complexity seeds... [0.204s] Searching alignments... [472.294s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.921s] Building query seed array... [2.275s] Computing hash join... [5.841s] Masking low complexity seeds... [0.225s] Searching alignments... [199.633s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.375s] Building query seed array... [2.431s] Computing hash join... [5.171s] Masking low complexity seeds... [0.213s] Searching alignments... [151.019s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.077s] Building query seed array... [2.051s] Computing hash join... [5.118s] Masking low complexity seeds... [0.209s] Searching alignments... [149.818s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.657s] Building query seed array... [1.791s] Computing hash join... [5.401s] Masking low complexity seeds... [0.209s] Searching alignments... [220.843s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.234s] Building query seed array... [2.082s] Computing hash join... [5.301s] Masking low complexity seeds... [0.192s] Searching alignments... [173.735s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.505s] Building query seed array... [2.213s] Computing hash join... [4.897s] Masking low complexity seeds... [0.192s] Searching alignments... [124.464s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.909s] Building query seed array... [1.84s] Computing hash join... [5.092s] Masking low complexity seeds... [0.199s] Searching alignments... [129.255s] Deallocating memory... [0s] Deallocating buffers... [0.166s] Clearing query masking... [1.436s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.71s] Sorting trace points... [1.803s] Computing alignments... [58.148s] Deallocating buffers... [0.066s] Loading trace points... [0.059s] Sorting trace points... [1.726s] Computing alignments... [59.75s] Deallocating buffers... [0.054s] Loading trace points... [0.083s] Sorting trace points... [1.657s] Computing alignments... [59.775s] Deallocating buffers... [0.06s] Loading trace points... [0.082s] Sorting trace points... [1.685s] Computing alignments... [59.77s] Deallocating buffers... [0.058s] Loading trace points... [0.053s] Sorting trace points... [1.338s] Computing alignments... [58.695s] Deallocating buffers... [0.058s] Loading trace points... [0.06s] Sorting trace points... [1.567s] Computing alignments... [56.376s] Deallocating buffers... [0.056s] Loading trace points... [0.044s] Sorting trace points... [1.774s] Computing alignments... [57.189s] Deallocating buffers... [0.043s] Loading trace points... [0.073s] Sorting trace points... [1.864s] Computing alignments... [58.666s] Deallocating buffers... [0.05s] Loading trace points... [0.064s] Sorting trace points... [1.438s] Computing alignments... [57.239s] Deallocating buffers... [0.05s] Loading trace points... [0.039s] Sorting trace points... [1.445s] Computing alignments... [59.573s] Deallocating buffers... [0.059s] Loading trace points... [0.061s] Sorting trace points... [1.809s] Computing alignments... [58.475s] Deallocating buffers... [0.056s] Loading trace points... [0.065s] Sorting trace points... [1.853s] Computing alignments... [58.374s] Deallocating buffers... [0.057s] Loading trace points... [0.07s] Sorting trace points... [1.469s] Computing alignments... [56.592s] Deallocating buffers... [0.054s] Loading trace points... [0.069s] Sorting trace points... [1.482s] Computing alignments... [58.348s] Deallocating buffers... [0.051s] Loading trace points... [0.002s] Sorting trace points... [1.3s] Computing alignments... [57.309s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [1.732s] Computing alignments... [56.597s] Deallocating buffers... [0.057s] Loading trace points... [0s] [968.356s] Deallocating reference... [0.087s] Loading reference sequences... [30.615s] Masking reference... [31.337s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.489s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.333s] Building query seed array... [2.147s] Computing hash join... [5.777s] Masking low complexity seeds... [0.224s] Searching alignments... [478.668s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.707s] Building query seed array... [2.926s] Computing hash join... [5.604s] Masking low complexity seeds... [0.236s] Searching alignments... [199.078s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.831s] Building query seed array... [2.605s] Computing hash join... [4.95s] Masking low complexity seeds... [0.218s] Searching alignments... [151.073s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.838s] Building query seed array... [2.096s] Computing hash join... [5.165s] Masking low complexity seeds... [0.209s] Searching alignments... [149.35s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.471s] Building query seed array... [1.898s] Computing hash join... [4.853s] Masking low complexity seeds... [0.194s] Searching alignments... [221.085s] Deallocating memory... [0.003s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.477s] Building query seed array... [2.356s] Computing hash join... [4.767s] Masking low complexity seeds... [0.188s] Searching alignments... [172.068s] Deallocating memory... [0.001s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.586s] Building query seed array... [2.304s] Computing hash join... [4.855s] Masking low complexity seeds... [0.198s] Searching alignments... [126.837s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.207s] Building query seed array... [2.144s] Computing hash join... [5.277s] Masking low complexity seeds... [0.207s] Searching alignments... [135.985s] Deallocating memory... [0s] Deallocating buffers... [1.135s] Clearing query masking... [1.368s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.725s] Sorting trace points... [1.871s] Computing alignments... [56.11s] Deallocating buffers... [0.046s] Loading trace points... [0.069s] Sorting trace points... [1.845s] Computing alignments... [58.436s] Deallocating buffers... [0.043s] Loading trace points... [0.065s] Sorting trace points... [1.854s] Computing alignments... [58.721s] Deallocating buffers... [0.041s] Loading trace points... [0.096s] Sorting trace points... [1.93s] Computing alignments... [58.003s] Deallocating buffers... [0.042s] Loading trace points... [0.088s] Sorting trace points... [1.824s] Computing alignments... [57.372s] Deallocating buffers... [0.05s] Loading trace points... [0.052s] Sorting trace points... [1.669s] Computing alignments... [55.327s] Deallocating buffers... [0.044s] Loading trace points... [0.081s] Sorting trace points... [1.551s] Computing alignments... [56.359s] Deallocating buffers... [0.039s] Loading trace points... [0.002s] Sorting trace points... [1.607s] Computing alignments... [58.093s] Deallocating buffers... [0.029s] Loading trace points... [0.064s] Sorting trace points... [1.784s] Computing alignments... [56.327s] Deallocating buffers... [0.042s] Loading trace points... [0.064s] Sorting trace points... [1.949s] Computing alignments... [58.125s] Deallocating buffers... [0.047s] Loading trace points... [0.048s] Sorting trace points... [1.479s] Computing alignments... [57.011s] Deallocating buffers... [0.029s] Loading trace points... [0.047s] Sorting trace points... [1.757s] Computing alignments... [57.102s] Deallocating buffers... [0.04s] Loading trace points... [0.041s] Sorting trace points... [1.731s] Computing alignments... [55.664s] Deallocating buffers... [0.028s] Loading trace points... [0.046s] Sorting trace points... [1.755s] Computing alignments... [57.2s] Deallocating buffers... [0.043s] Loading trace points... [0.056s] Sorting trace points... [1.748s] Computing alignments... [56.666s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [1.788s] Computing alignments... [55.576s] Deallocating buffers... [0.022s] Loading trace points... [0s] [951.522s] Deallocating reference... [0.063s] Loading reference sequences... [251.961s] Masking reference... [31.191s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.124s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.681s] Building query seed array... [2.119s] Computing hash join... [5.105s] Masking low complexity seeds... [0.206s] Searching alignments... [475.069s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.332s] Building query seed array... [2.31s] Computing hash join... [5.383s] Masking low complexity seeds... [0.211s] Searching alignments... [199.182s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.21s] Building query seed array... [2.395s] Computing hash join... [5.344s] Masking low complexity seeds... [0.211s] Searching alignments... [149.049s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.054s] Building query seed array... [1.999s] Computing hash join... [5.567s] Masking low complexity seeds... [0.216s] Searching alignments... [149.783s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.341s] Building query seed array... [1.84s] Computing hash join... [5.259s] Masking low complexity seeds... [0.206s] Searching alignments... [220.587s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.42s] Building query seed array... [2.012s] Computing hash join... [5.329s] Masking low complexity seeds... [0.207s] Searching alignments... [170.038s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.24s] Building query seed array... [2.204s] Computing hash join... [5.247s] Masking low complexity seeds... [0.203s] Searching alignments... [125.189s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.844s] Building query seed array... [1.834s] Computing hash join... [5.38s] Masking low complexity seeds... [0.205s] Searching alignments... [129.946s] Deallocating memory... [0s] Deallocating buffers... [0.167s] Clearing query masking... [1.43s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.478s] Sorting trace points... [1.421s] Computing alignments... [59.521s] Deallocating buffers... [0.066s] Loading trace points... [0.292s] Sorting trace points... [1.921s] Computing alignments... [61.656s] Deallocating buffers... [0.06s] Loading trace points... [0.056s] Sorting trace points... [1.826s] Computing alignments... [62s] Deallocating buffers... [0.051s] Loading trace points... [0.057s] Sorting trace points... [1.528s] Computing alignments... [61.449s] Deallocating buffers... [0.051s] Loading trace points... [0.066s] Sorting trace points... [1.402s] Computing alignments... [60.357s] Deallocating buffers... [0.042s] Loading trace points... [0.039s] Sorting trace points... [1.372s] Computing alignments... [58.72s] Deallocating buffers... [0.05s] Loading trace points... [0.087s] Sorting trace points... [1.464s] Computing alignments... [60.093s] Deallocating buffers... [0.048s] Loading trace points... [0.068s] Sorting trace points... [1.402s] Computing alignments... [61.808s] Deallocating buffers... [0.052s] Loading trace points... [0.081s] Sorting trace points... [1.502s] Computing alignments... [59.158s] Deallocating buffers... [0.052s] Loading trace points... [0.084s] Sorting trace points... [1.828s] Computing alignments... [61.952s] Deallocating buffers... [0.05s] Loading trace points... [0.04s] Sorting trace points... [1.877s] Computing alignments... [60.799s] Deallocating buffers... [0.051s] Loading trace points... [0.154s] Sorting trace points... [1.857s] Computing alignments... [60.514s] Deallocating buffers... [0.055s] Loading trace points... [0.064s] Sorting trace points... [1.851s] Computing alignments... [59.016s] Deallocating buffers... [0.037s] Loading trace points... [0.073s] Sorting trace points... [1.764s] Computing alignments... [60.387s] Deallocating buffers... [0.052s] Loading trace points... [0.049s] Sorting trace points... [1.333s] Computing alignments... [59.573s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [1.385s] Computing alignments... [58.448s] Deallocating buffers... [0.052s] Loading trace points... [0s] [1003.84s] Deallocating reference... [0.11s] Loading reference sequences... [253.817s] Masking reference... [31.421s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.316s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.145s] Building query seed array... [2.151s] Computing hash join... [5.495s] Masking low complexity seeds... [0.212s] Searching alignments... [475.897s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.908s] Building query seed array... [2.821s] Computing hash join... [5.488s] Masking low complexity seeds... [0.218s] Searching alignments... [195.79s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.693s] Building query seed array... [2.597s] Computing hash join... [5.663s] Masking low complexity seeds... [0.231s] Searching alignments... [151.785s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.197s] Building query seed array... [2.273s] Computing hash join... [5.515s] Masking low complexity seeds... [0.219s] Searching alignments... [151.795s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.981s] Building query seed array... [1.956s] Computing hash join... [5.405s] Masking low complexity seeds... [0.201s] Searching alignments... [216.127s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.527s] Building query seed array... [2.334s] Computing hash join... [5.134s] Masking low complexity seeds... [0.2s] Searching alignments... [167.763s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.618s] Building query seed array... [2.328s] Computing hash join... [5.345s] Masking low complexity seeds... [0.196s] Searching alignments... [124.494s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.994s] Building query seed array... [2.068s] Computing hash join... [4.782s] Masking low complexity seeds... [0.193s] Searching alignments... [131.192s] Deallocating memory... [0s] Deallocating buffers... [0.844s] Clearing query masking... [1.376s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.647s] Sorting trace points... [1.857s] Computing alignments... [57.95s] Deallocating buffers... [0.037s] Loading trace points... [0.089s] Sorting trace points... [1.385s] Computing alignments... [59.861s] Deallocating buffers... [0.028s] Loading trace points... [0.039s] Sorting trace points... [1.858s] Computing alignments... [60.264s] Deallocating buffers... [0.034s] Loading trace points... [0.002s] Sorting trace points... [1.824s] Computing alignments... [59.1s] Deallocating buffers... [0.033s] Loading trace points... [0.059s] Sorting trace points... [1.791s] Computing alignments... [58.636s] Deallocating buffers... [0.045s] Loading trace points... [0.072s] Sorting trace points... [1.714s] Computing alignments... [56.988s] Deallocating buffers... [0.033s] Loading trace points... [0.058s] Sorting trace points... [1.318s] Computing alignments... [57.5s] Deallocating buffers... [0.035s] Loading trace points... [0.066s] Sorting trace points... [1.791s] Computing alignments... [59.913s] Deallocating buffers... [0.022s] Loading trace points... [0.062s] Sorting trace points... [1.802s] Computing alignments... [58.028s] Deallocating buffers... [0.044s] Loading trace points... [0.082s] Sorting trace points... [1.928s] Computing alignments... [59.743s] Deallocating buffers... [0.022s] Loading trace points... [0.063s] Sorting trace points... [1.728s] Computing alignments... [58.507s] Deallocating buffers... [0.042s] Loading trace points... [0.162s] Sorting trace points... [1.746s] Computing alignments... [58.545s] Deallocating buffers... [0.033s] Loading trace points... [0.068s] Sorting trace points... [1.812s] Computing alignments... [56.984s] Deallocating buffers... [0.028s] Loading trace points... [0.001s] Sorting trace points... [1.662s] Computing alignments... [59.192s] Deallocating buffers... [0.037s] Loading trace points... [0.057s] Sorting trace points... [1.624s] Computing alignments... [56.868s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.739s] Computing alignments... [57.274s] Deallocating buffers... [0.051s] Loading trace points... [0s] [974.119s] Deallocating reference... [0.078s] Loading reference sequences... [31.24s] Masking reference... [32.146s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.277s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.721s] Building query seed array... [2.142s] Computing hash join... [5.415s] Masking low complexity seeds... [0.214s] Searching alignments... [474.191s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.27s] Building query seed array... [2.717s] Computing hash join... [5.5s] Masking low complexity seeds... [0.221s] Searching alignments... [200.802s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.384s] Building query seed array... [2.59s] Computing hash join... [4.897s] Masking low complexity seeds... [0.202s] Searching alignments... [149.905s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.269s] Building query seed array... [2.229s] Computing hash join... [5.138s] Masking low complexity seeds... [0.22s] Searching alignments... [149.454s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.956s] Building query seed array... [1.908s] Computing hash join... [5.037s] Masking low complexity seeds... [0.213s] Searching alignments... [220.066s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.197s] Building query seed array... [2.767s] Computing hash join... [5.38s] Masking low complexity seeds... [0.201s] Searching alignments... [169.735s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.37s] Building query seed array... [2.296s] Computing hash join... [5.115s] Masking low complexity seeds... [0.209s] Searching alignments... [124.57s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.851s] Building query seed array... [2.015s] Computing hash join... [4.977s] Masking low complexity seeds... [0.194s] Searching alignments... [131.276s] Deallocating memory... [0s] Deallocating buffers... [0.567s] Clearing query masking... [1.398s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.015s] Sorting trace points... [1.911s] Computing alignments... [58.502s] Deallocating buffers... [0.043s] Loading trace points... [0.864s] Sorting trace points... [1.899s] Computing alignments... [60.419s] Deallocating buffers... [0.05s] Loading trace points... [0.045s] Sorting trace points... [1.681s] Computing alignments... [60.065s] Deallocating buffers... [0.045s] Loading trace points... [0.002s] Sorting trace points... [1.908s] Computing alignments... [59.936s] Deallocating buffers... [0.039s] Loading trace points... [0.046s] Sorting trace points... [1.785s] Computing alignments... [59.589s] Deallocating buffers... [0.038s] Loading trace points... [0.081s] Sorting trace points... [1.558s] Computing alignments... [58.012s] Deallocating buffers... [0.038s] Loading trace points... [0.066s] Sorting trace points... [1.791s] Computing alignments... [58.386s] Deallocating buffers... [0.033s] Loading trace points... [0.064s] Sorting trace points... [1.472s] Computing alignments... [60.242s] Deallocating buffers... [0.024s] Loading trace points... [0.271s] Sorting trace points... [1.877s] Computing alignments... [58.283s] Deallocating buffers... [0.039s] Loading trace points... [0.064s] Sorting trace points... [1.357s] Computing alignments... [60.441s] Deallocating buffers... [0.026s] Loading trace points... [0.074s] Sorting trace points... [1.8s] Computing alignments... [59.379s] Deallocating buffers... [0.04s] Loading trace points... [0.076s] Sorting trace points... [1.644s] Computing alignments... [59.031s] Deallocating buffers... [0.043s] Loading trace points... [0.063s] Sorting trace points... [1.328s] Computing alignments... [57.111s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.496s] Computing alignments... [59.24s] Deallocating buffers... [0.052s] Loading trace points... [0.047s] Sorting trace points... [1.735s] Computing alignments... [57.503s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.316s] Computing alignments... [57.537s] Deallocating buffers... [0.038s] Loading trace points... [0s] [982.724s] Deallocating reference... [0.083s] Loading reference sequences... [29.661s] Masking reference... [30.893s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.753s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.245s] Building query seed array... [1.982s] Computing hash join... [5.881s] Masking low complexity seeds... [0.215s] Searching alignments... [474.992s] Deallocating memory... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.587s] Building query seed array... [2.822s] Computing hash join... [5.705s] Masking low complexity seeds... [0.204s] Searching alignments... [200.591s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.821s] Building query seed array... [2.57s] Computing hash join... [4.917s] Masking low complexity seeds... [0.222s] Searching alignments... [148.508s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.369s] Building query seed array... [2.24s] Computing hash join... [5.172s] Masking low complexity seeds... [0.225s] Searching alignments... [149.985s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.476s] Building query seed array... [1.944s] Computing hash join... [4.933s] Masking low complexity seeds... [0.194s] Searching alignments... [217.894s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.852s] Building query seed array... [2.358s] Computing hash join... [5.498s] Masking low complexity seeds... [0.2s] Searching alignments... [168.833s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.394s] Building query seed array... [2.318s] Computing hash join... [4.925s] Masking low complexity seeds... [0.205s] Searching alignments... [125.386s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.001s] Building query seed array... [2.012s] Computing hash join... [5.259s] Masking low complexity seeds... [0.196s] Searching alignments... [131.503s] Deallocating memory... [0s] Deallocating buffers... [1.336s] Clearing query masking... [1.386s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.576s] Sorting trace points... [1.902s] Computing alignments... [55.907s] Deallocating buffers... [0.039s] Loading trace points... [0.074s] Sorting trace points... [1.848s] Computing alignments... [57.514s] Deallocating buffers... [0.04s] Loading trace points... [0.001s] Sorting trace points... [1.339s] Computing alignments... [58.176s] Deallocating buffers... [0.035s] Loading trace points... [0.063s] Sorting trace points... [1.367s] Computing alignments... [57.712s] Deallocating buffers... [0.036s] Loading trace points... [0.06s] Sorting trace points... [1.888s] Computing alignments... [57.003s] Deallocating buffers... [0.036s] Loading trace points... [0.084s] Sorting trace points... [1.679s] Computing alignments... [54.939s] Deallocating buffers... [0.033s] Loading trace points... [0.053s] Sorting trace points... [1.848s] Computing alignments... [56.195s] Deallocating buffers... [0.032s] Loading trace points... [0.049s] Sorting trace points... [1.478s] Computing alignments... [58.124s] Deallocating buffers... [0.037s] Loading trace points... [0.074s] Sorting trace points... [1.858s] Computing alignments... [55.78s] Deallocating buffers... [0.04s] Loading trace points... [0.092s] Sorting trace points... [1.882s] Computing alignments... [57.875s] Deallocating buffers... [0.042s] Loading trace points... [0.067s] Sorting trace points... [1.834s] Computing alignments... [56.384s] Deallocating buffers... [0.047s] Loading trace points... [0.062s] Sorting trace points... [1.357s] Computing alignments... [56.834s] Deallocating buffers... [0.044s] Loading trace points... [0.075s] Sorting trace points... [1.495s] Computing alignments... [55.3s] Deallocating buffers... [0.022s] Loading trace points... [0.096s] Sorting trace points... [1.518s] Computing alignments... [56.583s] Deallocating buffers... [0.034s] Loading trace points... [0.061s] Sorting trace points... [1.492s] Computing alignments... [55.45s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.347s] Computing alignments... [55.155s] Deallocating buffers... [0.029s] Loading trace points... [0s] [942.23s] Deallocating reference... [0.066s] Loading reference sequences... [30.136s] Masking reference... [30.867s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.371s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.481s] Building query seed array... [2.151s] Computing hash join... [5.772s] Masking low complexity seeds... [0.215s] Searching alignments... [478.45s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.902s] Building query seed array... [2.673s] Computing hash join... [5.002s] Masking low complexity seeds... [0.212s] Searching alignments... [200.408s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.683s] Building query seed array... [2.583s] Computing hash join... [5.073s] Masking low complexity seeds... [0.207s] Searching alignments... [151.891s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.605s] Building query seed array... [2.186s] Computing hash join... [5.134s] Masking low complexity seeds... [0.202s] Searching alignments... [151.263s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.269s] Building query seed array... [1.948s] Computing hash join... [5.606s] Masking low complexity seeds... [0.198s] Searching alignments... [217.374s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.452s] Building query seed array... [2.26s] Computing hash join... [5.433s] Masking low complexity seeds... [0.206s] Searching alignments... [172.222s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.66s] Building query seed array... [2.352s] Computing hash join... [5.657s] Masking low complexity seeds... [0.212s] Searching alignments... [126.031s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.432s] Building query seed array... [2.118s] Computing hash join... [5.121s] Masking low complexity seeds... [0.207s] Searching alignments... [130.172s] Deallocating memory... [0s] Deallocating buffers... [0.887s] Clearing query masking... [1.419s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.725s] Sorting trace points... [1.873s] Computing alignments... [56.53s] Deallocating buffers... [0.063s] Loading trace points... [0.062s] Sorting trace points... [1.445s] Computing alignments... [59.141s] Deallocating buffers... [0.056s] Loading trace points... [0.04s] Sorting trace points... [1.806s] Computing alignments... [59.158s] Deallocating buffers... [0.052s] Loading trace points... [0.001s] Sorting trace points... [1.773s] Computing alignments... [58.392s] Deallocating buffers... [0.065s] Loading trace points... [0.064s] Sorting trace points... [1.835s] Computing alignments... [57.396s] Deallocating buffers... [0.051s] Loading trace points... [0.086s] Sorting trace points... [1.364s] Computing alignments... [55.602s] Deallocating buffers... [0.062s] Loading trace points... [0.063s] Sorting trace points... [1.625s] Computing alignments... [56.503s] Deallocating buffers... [0.059s] Loading trace points... [0.085s] Sorting trace points... [1.362s] Computing alignments... [58.201s] Deallocating buffers... [0.052s] Loading trace points... [0.058s] Sorting trace points... [1.55s] Computing alignments... [56.098s] Deallocating buffers... [0.064s] Loading trace points... [0.06s] Sorting trace points... [1.81s] Computing alignments... [58.579s] Deallocating buffers... [0.057s] Loading trace points... [0.082s] Sorting trace points... [1.374s] Computing alignments... [57.221s] Deallocating buffers... [0.062s] Loading trace points... [0.073s] Sorting trace points... [1.752s] Computing alignments... [56.979s] Deallocating buffers... [0.055s] Loading trace points... [0.089s] Sorting trace points... [1.793s] Computing alignments... [56.06s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.52s] Computing alignments... [56.791s] Deallocating buffers... [0.062s] Loading trace points... [0.056s] Sorting trace points... [1.877s] Computing alignments... [56.863s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [1.555s] Computing alignments... [55.413s] Deallocating buffers... [0.038s] Loading trace points... [0s] [952.861s] Deallocating reference... [0.061s] Loading reference sequences... [29.526s] Masking reference... [30.897s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.95s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.825s] Building query seed array... [2.107s] Computing hash join... [5.48s] Masking low complexity seeds... [0.207s] Searching alignments... [474.202s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.258s] Building query seed array... [2.661s] Computing hash join... [5.225s] Masking low complexity seeds... [0.214s] Searching alignments... [197.309s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.38s] Building query seed array... [2.533s] Computing hash join... [5.274s] Masking low complexity seeds... [0.215s] Searching alignments... [150.981s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.696s] Building query seed array... [2.168s] Computing hash join... [5.547s] Masking low complexity seeds... [0.224s] Searching alignments... [148.591s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.243s] Building query seed array... [1.99s] Computing hash join... [5.203s] Masking low complexity seeds... [0.2s] Searching alignments... [217.406s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.123s] Building query seed array... [2.237s] Computing hash join... [5.281s] Masking low complexity seeds... [0.213s] Searching alignments... [172.758s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.048s] Building query seed array... [2.294s] Computing hash join... [5.191s] Masking low complexity seeds... [0.2s] Searching alignments... [125.684s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.119s] Building query seed array... [2.119s] Computing hash join... [5.245s] Masking low complexity seeds... [0.2s] Searching alignments... [130.228s] Deallocating memory... [0s] Deallocating buffers... [0.471s] Clearing query masking... [1.442s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.573s] Sorting trace points... [1.839s] Computing alignments... [51.735s] Deallocating buffers... [0.039s] Loading trace points... [0.085s] Sorting trace points... [1.866s] Computing alignments... [54.164s] Deallocating buffers... [0.04s] Loading trace points... [0.045s] Sorting trace points... [1.804s] Computing alignments... [53.042s] Deallocating buffers... [0.033s] Loading trace points... [0.081s] Sorting trace points... [1.826s] Computing alignments... [53.115s] Deallocating buffers... [0.033s] Loading trace points... [0.06s] Sorting trace points... [1.828s] Computing alignments... [52.058s] Deallocating buffers... [0.022s] Loading trace points... [0.098s] Sorting trace points... [1.775s] Computing alignments... [50.715s] Deallocating buffers... [0.035s] Loading trace points... [0.056s] Sorting trace points... [1.687s] Computing alignments... [51.655s] Deallocating buffers... [0.032s] Loading trace points... [0.08s] Sorting trace points... [1.724s] Computing alignments... [53.696s] Deallocating buffers... [0.034s] Loading trace points... [0.113s] Sorting trace points... [1.785s] Computing alignments... [51.451s] Deallocating buffers... [0.027s] Loading trace points... [0.07s] Sorting trace points... [1.525s] Computing alignments... [53.033s] Deallocating buffers... [0.037s] Loading trace points... [0.088s] Sorting trace points... [1.355s] Computing alignments... [51.991s] Deallocating buffers... [0.024s] Loading trace points... [0.059s] Sorting trace points... [1.872s] Computing alignments... [52.489s] Deallocating buffers... [0.033s] Loading trace points... [0.089s] Sorting trace points... [1.467s] Computing alignments... [50.827s] Deallocating buffers... [0.033s] Loading trace points... [0.117s] Sorting trace points... [1.722s] Computing alignments... [52.155s] Deallocating buffers... [0.032s] Loading trace points... [0.062s] Sorting trace points... [1.791s] Computing alignments... [51.242s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.288s] Computing alignments... [50.872s] Deallocating buffers... [0.034s] Loading trace points... [0s] [872.76s] Deallocating reference... [0.06s] Loading reference sequences... [29.159s] Masking reference... [32.052s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [31.808s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.298s] Building query seed array... [2.149s] Computing hash join... [5.516s] Masking low complexity seeds... [0.211s] Searching alignments... [477.182s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.613s] Building query seed array... [2.843s] Computing hash join... [5.531s] Masking low complexity seeds... [0.213s] Searching alignments... [200.549s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.479s] Building query seed array... [2.582s] Computing hash join... [5.25s] Masking low complexity seeds... [0.21s] Searching alignments... [154.13s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.315s] Building query seed array... [2.235s] Computing hash join... [5.372s] Masking low complexity seeds... [0.214s] Searching alignments... [149.555s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.246s] Building query seed array... [1.952s] Computing hash join... [5.277s] Masking low complexity seeds... [0.214s] Searching alignments... [218.19s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.57s] Building query seed array... [2.393s] Computing hash join... [5.35s] Masking low complexity seeds... [0.204s] Searching alignments... [175.061s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.19s] Building query seed array... [2.296s] Computing hash join... [5.413s] Masking low complexity seeds... [0.193s] Searching alignments... [126.911s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.247s] Building query seed array... [2.085s] Computing hash join... [5.265s] Masking low complexity seeds... [0.197s] Searching alignments... [134.053s] Deallocating memory... [0s] Deallocating buffers... [0.88s] Clearing query masking... [1.417s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.864s] Sorting trace points... [1.399s] Computing alignments... [61.322s] Deallocating buffers... [0.06s] Loading trace points... [0.075s] Sorting trace points... [1.858s] Computing alignments... [63.579s] Deallocating buffers... [0.059s] Loading trace points... [0.087s] Sorting trace points... [1.569s] Computing alignments... [63.666s] Deallocating buffers... [0.039s] Loading trace points... [0.063s] Sorting trace points... [1.492s] Computing alignments... [63.428s] Deallocating buffers... [0.052s] Loading trace points... [0.092s] Sorting trace points... [1.627s] Computing alignments... [62.202s] Deallocating buffers... [0.048s] Loading trace points... [0.754s] Sorting trace points... [1.436s] Computing alignments... [60.643s] Deallocating buffers... [0.063s] Loading trace points... [0.058s] Sorting trace points... [1.852s] Computing alignments... [61.124s] Deallocating buffers... [0.05s] Loading trace points... [0.067s] Sorting trace points... [1.799s] Computing alignments... [63.367s] Deallocating buffers... [0.043s] Loading trace points... [0.072s] Sorting trace points... [1.544s] Computing alignments... [60.651s] Deallocating buffers... [0.057s] Loading trace points... [0.101s] Sorting trace points... [1.382s] Computing alignments... [63.046s] Deallocating buffers... [0.049s] Loading trace points... [0.002s] Sorting trace points... [1.838s] Computing alignments... [61.964s] Deallocating buffers... [0.055s] Loading trace points... [0.114s] Sorting trace points... [2.053s] Computing alignments... [62.195s] Deallocating buffers... [0.168s] Loading trace points... [0.082s] Sorting trace points... [1.578s] Computing alignments... [59.822s] Deallocating buffers... [0.046s] Loading trace points... [0.058s] Sorting trace points... [1.559s] Computing alignments... [62.081s] Deallocating buffers... [0.053s] Loading trace points... [0.065s] Sorting trace points... [1.816s] Computing alignments... [60.991s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [1.578s] Computing alignments... [60.328s] Deallocating buffers... [0.048s] Loading trace points... [0s] [1029.44s] Deallocating reference... [0.073s] Loading reference sequences... [253.603s] Masking reference... [31.788s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.684s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.336s] Building query seed array... [2.066s] Computing hash join... [5.537s] Masking low complexity seeds... [0.218s] Searching alignments... [476.451s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.693s] Building query seed array... [2.559s] Computing hash join... [5.402s] Masking low complexity seeds... [0.232s] Searching alignments... [198.945s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.316s] Building query seed array... [2.454s] Computing hash join... [5.495s] Masking low complexity seeds... [0.22s] Searching alignments... [151.387s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.219s] Building query seed array... [2.08s] Computing hash join... [5.473s] Masking low complexity seeds... [0.209s] Searching alignments... [149.689s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.655s] Building query seed array... [1.884s] Computing hash join... [5.281s] Masking low complexity seeds... [0.191s] Searching alignments... [220.488s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.262s] Building query seed array... [2.207s] Computing hash join... [5.192s] Masking low complexity seeds... [0.199s] Searching alignments... [171.384s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.074s] Building query seed array... [2.265s] Computing hash join... [5.35s] Masking low complexity seeds... [0.205s] Searching alignments... [124.53s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.289s] Building query seed array... [2.015s] Computing hash join... [5.286s] Masking low complexity seeds... [0.196s] Searching alignments... [132.056s] Deallocating memory... [0s] Deallocating buffers... [0.366s] Clearing query masking... [1.474s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.952s] Sorting trace points... [1.906s] Computing alignments... [60.16s] Deallocating buffers... [0.067s] Loading trace points... [0.053s] Sorting trace points... [1.414s] Computing alignments... [62.13s] Deallocating buffers... [0.068s] Loading trace points... [0.099s] Sorting trace points... [1.799s] Computing alignments... [61.708s] Deallocating buffers... [0.059s] Loading trace points... [0.086s] Sorting trace points... [1.996s] Computing alignments... [61.74s] Deallocating buffers... [0.064s] Loading trace points... [0.092s] Sorting trace points... [1.781s] Computing alignments... [60.279s] Deallocating buffers... [0.056s] Loading trace points... [0.059s] Sorting trace points... [1.871s] Computing alignments... [59.17s] Deallocating buffers... [0.057s] Loading trace points... [0.11s] Sorting trace points... [1.454s] Computing alignments... [59.624s] Deallocating buffers... [0.064s] Loading trace points... [0.042s] Sorting trace points... [1.571s] Computing alignments... [61.592s] Deallocating buffers... [0.062s] Loading trace points... [0.05s] Sorting trace points... [1.812s] Computing alignments... [59.558s] Deallocating buffers... [0.058s] Loading trace points... [0.002s] Sorting trace points... [1.554s] Computing alignments... [61.953s] Deallocating buffers... [0.065s] Loading trace points... [0.072s] Sorting trace points... [1.809s] Computing alignments... [60.508s] Deallocating buffers... [0.06s] Loading trace points... [0.043s] Sorting trace points... [1.891s] Computing alignments... [60.337s] Deallocating buffers... [0.053s] Loading trace points... [0.214s] Sorting trace points... [1.706s] Computing alignments... [58.725s] Deallocating buffers... [0.061s] Loading trace points... [0.05s] Sorting trace points... [1.462s] Computing alignments... [60.828s] Deallocating buffers... [0.063s] Loading trace points... [0.081s] Sorting trace points... [1.578s] Computing alignments... [59.66s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [1.78s] Computing alignments... [59.199s] Deallocating buffers... [0.073s] Loading trace points... [0s] [1006.71s] Deallocating reference... [0.072s] Loading reference sequences... [29.14s] Masking reference... [30.85s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.656s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.547s] Building query seed array... [2.111s] Computing hash join... [5.951s] Masking low complexity seeds... [0.211s] Searching alignments... [474.104s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.333s] Building query seed array... [2.758s] Computing hash join... [5.858s] Masking low complexity seeds... [0.225s] Searching alignments... [198.527s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.865s] Building query seed array... [2.562s] Computing hash join... [5.8s] Masking low complexity seeds... [0.211s] Searching alignments... [151.432s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.424s] Building query seed array... [2.263s] Computing hash join... [5.079s] Masking low complexity seeds... [0.223s] Searching alignments... [147.527s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.94s] Building query seed array... [1.915s] Computing hash join... [5.271s] Masking low complexity seeds... [0.198s] Searching alignments... [220.606s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.682s] Building query seed array... [2.238s] Computing hash join... [5.485s] Masking low complexity seeds... [0.199s] Searching alignments... [173.576s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.745s] Building query seed array... [2.404s] Computing hash join... [5.445s] Masking low complexity seeds... [0.197s] Searching alignments... [125.545s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.56s] Building query seed array... [2.042s] Computing hash join... [5.165s] Masking low complexity seeds... [0.198s] Searching alignments... [130.917s] Deallocating memory... [0s] Deallocating buffers... [1.049s] Clearing query masking... [1.419s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.67s] Sorting trace points... [1.887s] Computing alignments... [56.6s] Deallocating buffers... [0.032s] Loading trace points... [0.08s] Sorting trace points... [1.865s] Computing alignments... [58.179s] Deallocating buffers... [0.034s] Loading trace points... [0.052s] Sorting trace points... [1.84s] Computing alignments... [57.844s] Deallocating buffers... [0.033s] Loading trace points... [0.055s] Sorting trace points... [1.901s] Computing alignments... [58.209s] Deallocating buffers... [0.039s] Loading trace points... [0.111s] Sorting trace points... [1.647s] Computing alignments... [56.883s] Deallocating buffers... [0.041s] Loading trace points... [0.001s] Sorting trace points... [1.339s] Computing alignments... [55.659s] Deallocating buffers... [0.034s] Loading trace points... [0.06s] Sorting trace points... [1.834s] Computing alignments... [56.253s] Deallocating buffers... [0.033s] Loading trace points... [0.074s] Sorting trace points... [1.707s] Computing alignments... [58.122s] Deallocating buffers... [0.027s] Loading trace points... [0.071s] Sorting trace points... [1.809s] Computing alignments... [55.906s] Deallocating buffers... [0.039s] Loading trace points... [0.066s] Sorting trace points... [1.633s] Computing alignments... [58.071s] Deallocating buffers... [0.037s] Loading trace points... [0.078s] Sorting trace points... [1.814s] Computing alignments... [56.749s] Deallocating buffers... [0.043s] Loading trace points... [0.087s] Sorting trace points... [1.826s] Computing alignments... [56.85s] Deallocating buffers... [0.034s] Loading trace points... [0.085s] Sorting trace points... [1.807s] Computing alignments... [55.224s] Deallocating buffers... [0.027s] Loading trace points... [0.04s] Sorting trace points... [1.717s] Computing alignments... [57.044s] Deallocating buffers... [0.045s] Loading trace points... [0.074s] Sorting trace points... [1.761s] Computing alignments... [55.463s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [1.424s] Computing alignments... [55.543s] Deallocating buffers... [0.046s] Loading trace points... [0s] [947.778s] Deallocating reference... [0.066s] Loading reference sequences... [23.439s] Masking reference... [26.055s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.593s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.515s] Building query seed array... [2.104s] Computing hash join... [4.401s] Masking low complexity seeds... [0.201s] Searching alignments... [377.917s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.987s] Building query seed array... [2.274s] Computing hash join... [4.724s] Masking low complexity seeds... [0.206s] Searching alignments... [162.083s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.321s] Building query seed array... [2.39s] Computing hash join... [4.713s] Masking low complexity seeds... [0.215s] Searching alignments... [121.876s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.204s] Building query seed array... [1.997s] Computing hash join... [4.209s] Masking low complexity seeds... [0.193s] Searching alignments... [119.721s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.106s] Building query seed array... [1.83s] Computing hash join... [3.999s] Masking low complexity seeds... [0.19s] Searching alignments... [177.553s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.015s] Building query seed array... [2.084s] Computing hash join... [4.335s] Masking low complexity seeds... [0.188s] Searching alignments... [136.64s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.882s] Building query seed array... [2.193s] Computing hash join... [4s] Masking low complexity seeds... [0.19s] Searching alignments... [100.032s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.175s] Building query seed array... [1.898s] Computing hash join... [3.98s] Masking low complexity seeds... [0.2s] Searching alignments... [105.669s] Deallocating memory... [0s] Deallocating buffers... [0.137s] Clearing query masking... [1.442s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.907s] Sorting trace points... [1.503s] Computing alignments... [43.88s] Deallocating buffers... [0.026s] Loading trace points... [0.041s] Sorting trace points... [1.489s] Computing alignments... [45.701s] Deallocating buffers... [0.031s] Loading trace points... [0.079s] Sorting trace points... [1.105s] Computing alignments... [45.754s] Deallocating buffers... [0.029s] Loading trace points... [0.09s] Sorting trace points... [1.311s] Computing alignments... [45.348s] Deallocating buffers... [0.028s] Loading trace points... [0.085s] Sorting trace points... [1.486s] Computing alignments... [44.616s] Deallocating buffers... [0.027s] Loading trace points... [0.064s] Sorting trace points... [1.451s] Computing alignments... [43.118s] Deallocating buffers... [0.018s] Loading trace points... [0.133s] Sorting trace points... [1.215s] Computing alignments... [44.07s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.32s] Computing alignments... [45.354s] Deallocating buffers... [0.021s] Loading trace points... [0.046s] Sorting trace points... [1.456s] Computing alignments... [43.906s] Deallocating buffers... [0.03s] Loading trace points... [0.046s] Sorting trace points... [1.453s] Computing alignments... [45.493s] Deallocating buffers... [0.027s] Loading trace points... [0.044s] Sorting trace points... [1.472s] Computing alignments... [44.163s] Deallocating buffers... [0.027s] Loading trace points... [0.089s] Sorting trace points... [1.519s] Computing alignments... [44.654s] Deallocating buffers... [0.03s] Loading trace points... [0.057s] Sorting trace points... [1.167s] Computing alignments... [43.536s] Deallocating buffers... [0.02s] Loading trace points... [0.053s] Sorting trace points... [1.197s] Computing alignments... [44.418s] Deallocating buffers... [0.029s] Loading trace points... [0.058s] Sorting trace points... [1.166s] Computing alignments... [43.848s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.145s] Computing alignments... [42.976s] Deallocating buffers... [0.019s] Loading trace points... [0s] [741.71s] Deallocating reference... [0.054s] Loading reference sequences... [0.085s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [3829.76s] [3829.76s] Deallocating queries... [0.082s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.852s] [3.588s] Closing the database... [0s] Cleaning up... [0s] Total time = 43799.5s Reported 3901580819 pairwise alignments, 3901580819 HSPs. 5032259 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-01.trimmed.R2.fastq.gz complete: CH05-01.trimmed.R2.blastx.meganized.daa Now MEGANizing CH05-01.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-01.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (282.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.9s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,992.1s) Total reads: 5,032,259 With hits: 5,032,259 Alignments: 2,740,389,024 Assig. Taxonomy: 2,188,434 Assig. SEED: 72,064 Assig. EGGNOG: 19,336 Assig. GTDB: 168,276 Assig. EC: 348,684 Assig. INTERPRO2GO: 988,761 MinSupport set to: 2516 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 4,770 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.7s) Min-supp. changes: 3,123 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4.9s) Binning reads Syncing 100% (0.2s) Class. Taxonomy: 160 Class. SEED: 481 Class. EGGNOG: 1,572 Class. GTDB: 38 Class. EC: 2,255 Class. INTERPRO2GO: 8,552 Total time: 6,297s Peak memory: 37.6 of 195.3G MEGANization of CH05-01.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-06.trimmed.R1.fastq.gz... 244f7796e774623d2c38e23947fcb509 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-06.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-06.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.337s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.66s] Opening the output file... [0s] Loading query sequences... [74.42s] Masking queries... [19.734s] Algorithm: Double-indexed Building query histograms... [17.713s] Loading reference sequences... [32.884s] Masking reference... [30.998s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.247s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.329s] Building query seed array... [1.862s] Computing hash join... [5.523s] Masking low complexity seeds... [0.2s] Searching alignments... [581.281s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.743s] Building query seed array... [2.218s] Computing hash join... [4.974s] Masking low complexity seeds... [0.197s] Searching alignments... [246.484s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.529s] Building query seed array... [2.257s] Computing hash join... [4.825s] Masking low complexity seeds... [0.188s] Searching alignments... [180.865s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.584s] Building query seed array... [1.887s] Computing hash join... [5.28s] Masking low complexity seeds... [0.187s] Searching alignments... [182.956s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.007s] Building query seed array... [1.657s] Computing hash join... [5.193s] Masking low complexity seeds... [0.18s] Searching alignments... [274.369s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.031s] Building query seed array... [2.037s] Computing hash join... [4.615s] Masking low complexity seeds... [0.171s] Searching alignments... [203.729s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.091s] Building query seed array... [1.965s] Computing hash join... [4.581s] Masking low complexity seeds... [0.171s] Searching alignments... [151.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.824s] Building query seed array... [1.764s] Computing hash join... [5.182s] Masking low complexity seeds... [0.184s] Searching alignments... [153.56s] Deallocating memory... [0s] Deallocating buffers... [0.565s] Clearing query masking... [1.155s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.117s] Sorting trace points... [2.054s] Computing alignments... [64.109s] Deallocating buffers... [0.031s] Loading trace points... [0.062s] Sorting trace points... [1.826s] Computing alignments... [65.035s] Deallocating buffers... [0.045s] Loading trace points... [0.051s] Sorting trace points... [1.648s] Computing alignments... [65.126s] Deallocating buffers... [0.031s] Loading trace points... [0.081s] Sorting trace points... [2.228s] Computing alignments... [68.077s] Deallocating buffers... [0.04s] Loading trace points... [0.042s] Sorting trace points... [2.058s] Computing alignments... [65.439s] Deallocating buffers... [0.043s] Loading trace points... [0.237s] Sorting trace points... [2.141s] Computing alignments... [64.398s] Deallocating buffers... [0.044s] Loading trace points... [0.067s] Sorting trace points... [2.088s] Computing alignments... [63.095s] Deallocating buffers... [0.043s] Loading trace points... [0.094s] Sorting trace points... [2.139s] Computing alignments... [67.439s] Deallocating buffers... [0.046s] Loading trace points... [0.054s] Sorting trace points... [2.133s] Computing alignments... [67.478s] Deallocating buffers... [0.039s] Loading trace points... [0.067s] Sorting trace points... [1.878s] Computing alignments... [65.939s] Deallocating buffers... [0.105s] Loading trace points... [0.041s] Sorting trace points... [1.55s] Computing alignments... [65.104s] Deallocating buffers... [0.042s] Loading trace points... [0.058s] Sorting trace points... [1.822s] Computing alignments... [67.015s] Deallocating buffers... [0.043s] Loading trace points... [0.063s] Sorting trace points... [2.162s] Computing alignments... [65.313s] Deallocating buffers... [0.042s] Loading trace points... [0.047s] Sorting trace points... [2.501s] Computing alignments... [67.501s] Deallocating buffers... [0.33s] Loading trace points... [0.049s] Sorting trace points... [2.078s] Computing alignments... [65.972s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.593s] Computing alignments... [65.451s] Deallocating buffers... [0.043s] Loading trace points... [0s] [1097.67s] Deallocating reference... [0.073s] Loading reference sequences... [29.091s] Masking reference... [30.864s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.919s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.399s] Building query seed array... [1.783s] Computing hash join... [5.639s] Masking low complexity seeds... [0.193s] Searching alignments... [567.454s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.608s] Building query seed array... [2.342s] Computing hash join... [5.194s] Masking low complexity seeds... [0.191s] Searching alignments... [243.143s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.708s] Building query seed array... [2.242s] Computing hash join... [4.865s] Masking low complexity seeds... [0.18s] Searching alignments... [180.063s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.755s] Building query seed array... [1.898s] Computing hash join... [5.586s] Masking low complexity seeds... [0.199s] Searching alignments... [180.92s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.423s] Building query seed array... [1.742s] Computing hash join... [4.714s] Masking low complexity seeds... [0.178s] Searching alignments... [268.238s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.804s] Building query seed array... [1.915s] Computing hash join... [5.591s] Masking low complexity seeds... [0.182s] Searching alignments... [200.908s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.219s] Building query seed array... [2.079s] Computing hash join... [5.418s] Masking low complexity seeds... [0.182s] Searching alignments... [147.585s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.16s] Building query seed array... [1.831s] Computing hash join... [5.086s] Masking low complexity seeds... [0.189s] Searching alignments... [154.097s] Deallocating memory... [0s] Deallocating buffers... [1.249s] Clearing query masking... [1.176s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.13s] Sorting trace points... [1.826s] Computing alignments... [67.331s] Deallocating buffers... [0.061s] Loading trace points... [0.052s] Sorting trace points... [2.101s] Computing alignments... [68.861s] Deallocating buffers... [0.05s] Loading trace points... [0.115s] Sorting trace points... [2.205s] Computing alignments... [67.789s] Deallocating buffers... [0.054s] Loading trace points... [0.065s] Sorting trace points... [1.747s] Computing alignments... [71.921s] Deallocating buffers... [0.06s] Loading trace points... [0.079s] Sorting trace points... [1.591s] Computing alignments... [67.901s] Deallocating buffers... [0.053s] Loading trace points... [0.079s] Sorting trace points... [1.866s] Computing alignments... [66.218s] Deallocating buffers... [0.054s] Loading trace points... [0.074s] Sorting trace points... [2.097s] Computing alignments... [65.723s] Deallocating buffers... [0.055s] Loading trace points... [0.522s] Sorting trace points... [2.163s] Computing alignments... [70.925s] Deallocating buffers... [0.063s] Loading trace points... [0.105s] Sorting trace points... [1.748s] Computing alignments... [71.161s] Deallocating buffers... [0.049s] Loading trace points... [0.001s] Sorting trace points... [2.216s] Computing alignments... [69.548s] Deallocating buffers... [0.06s] Loading trace points... [0.055s] Sorting trace points... [2.178s] Computing alignments... [68.084s] Deallocating buffers... [0.05s] Loading trace points... [0.078s] Sorting trace points... [1.926s] Computing alignments... [69.041s] Deallocating buffers... [0.064s] Loading trace points... [0.323s] Sorting trace points... [1.762s] Computing alignments... [68.165s] Deallocating buffers... [0.052s] Loading trace points... [0.084s] Sorting trace points... [1.773s] Computing alignments... [70.2s] Deallocating buffers... [0.045s] Loading trace points... [0.072s] Sorting trace points... [1.935s] Computing alignments... [69.018s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [2.107s] Computing alignments... [68.568s] Deallocating buffers... [0.056s] Loading trace points... [0s] [1145.61s] Deallocating reference... [0.084s] Loading reference sequences... [29.236s] Masking reference... [30.852s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.055s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.237s] Building query seed array... [1.695s] Computing hash join... [4.937s] Masking low complexity seeds... [0.186s] Searching alignments... [571.883s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.567s] Building query seed array... [1.97s] Computing hash join... [5.173s] Masking low complexity seeds... [0.193s] Searching alignments... [248.447s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.437s] Building query seed array... [2.124s] Computing hash join... [5.151s] Masking low complexity seeds... [0.191s] Searching alignments... [179.057s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.91s] Building query seed array... [1.721s] Computing hash join... [4.881s] Masking low complexity seeds... [0.186s] Searching alignments... [183.348s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.6s] Building query seed array... [1.567s] Computing hash join... [4.687s] Masking low complexity seeds... [0.186s] Searching alignments... [264.462s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.765s] Building query seed array... [1.799s] Computing hash join... [5.115s] Masking low complexity seeds... [0.184s] Searching alignments... [200.837s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.923s] Building query seed array... [1.824s] Computing hash join... [5.263s] Masking low complexity seeds... [0.179s] Searching alignments... [150.956s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.911s] Building query seed array... [1.586s] Computing hash join... [5.383s] Masking low complexity seeds... [0.18s] Searching alignments... [153.081s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [1.18s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.154s] Sorting trace points... [2.092s] Computing alignments... [67.612s] Deallocating buffers... [0.061s] Loading trace points... [0.001s] Sorting trace points... [2.062s] Computing alignments... [68.802s] Deallocating buffers... [0.046s] Loading trace points... [0.07s] Sorting trace points... [1.85s] Computing alignments... [67.807s] Deallocating buffers... [0.051s] Loading trace points... [0.29s] Sorting trace points... [2.216s] Computing alignments... [71.051s] Deallocating buffers... [0.05s] Loading trace points... [0.069s] Sorting trace points... [1.839s] Computing alignments... [68.861s] Deallocating buffers... [0.056s] Loading trace points... [0.087s] Sorting trace points... [2.127s] Computing alignments... [66.653s] Deallocating buffers... [0.051s] Loading trace points... [0.088s] Sorting trace points... [2.04s] Computing alignments... [65.39s] Deallocating buffers... [0.052s] Loading trace points... [0.065s] Sorting trace points... [2.214s] Computing alignments... [70.428s] Deallocating buffers... [0.059s] Loading trace points... [0.054s] Sorting trace points... [1.593s] Computing alignments... [71.199s] Deallocating buffers... [0.075s] Loading trace points... [0.054s] Sorting trace points... [1.886s] Computing alignments... [69.428s] Deallocating buffers... [0.056s] Loading trace points... [0.043s] Sorting trace points... [1.569s] Computing alignments... [68.553s] Deallocating buffers... [0.057s] Loading trace points... [0.071s] Sorting trace points... [1.813s] Computing alignments... [69.348s] Deallocating buffers... [0.06s] Loading trace points... [0.07s] Sorting trace points... [2.297s] Computing alignments... [67.694s] Deallocating buffers... [0.213s] Loading trace points... [0.065s] Sorting trace points... [1.74s] Computing alignments... [71.213s] Deallocating buffers... [0.056s] Loading trace points... [0.061s] Sorting trace points... [2.056s] Computing alignments... [69.622s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [1.99s] Computing alignments... [68.688s] Deallocating buffers... [0.065s] Loading trace points... [0s] [1147.19s] Deallocating reference... [0.095s] Loading reference sequences... [28.946s] Masking reference... [30.855s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.45s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.434s] Building query seed array... [1.756s] Computing hash join... [4.881s] Masking low complexity seeds... [0.196s] Searching alignments... [577.104s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.292s] Building query seed array... [1.982s] Computing hash join... [5.059s] Masking low complexity seeds... [0.187s] Searching alignments... [243.198s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.646s] Building query seed array... [2.058s] Computing hash join... [5.551s] Masking low complexity seeds... [0.202s] Searching alignments... [182.587s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.817s] Building query seed array... [1.614s] Computing hash join... [5.378s] Masking low complexity seeds... [0.185s] Searching alignments... [184.639s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.468s] Building query seed array... [1.624s] Computing hash join... [4.55s] Masking low complexity seeds... [0.171s] Searching alignments... [264.792s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.217s] Building query seed array... [1.76s] Computing hash join... [5.041s] Masking low complexity seeds... [0.169s] Searching alignments... [204.59s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.723s] Building query seed array... [1.897s] Computing hash join... [4.696s] Masking low complexity seeds... [0.172s] Searching alignments... [150.092s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.215s] Building query seed array... [1.625s] Computing hash join... [4.62s] Masking low complexity seeds... [0.168s] Searching alignments... [155.979s] Deallocating memory... [0s] Deallocating buffers... [0.161s] Clearing query masking... [1.245s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.994s] Sorting trace points... [2.092s] Computing alignments... [66.342s] Deallocating buffers... [0.043s] Loading trace points... [0.103s] Sorting trace points... [2.122s] Computing alignments... [67.348s] Deallocating buffers... [0.051s] Loading trace points... [0.091s] Sorting trace points... [1.573s] Computing alignments... [66.757s] Deallocating buffers... [0.034s] Loading trace points... [0.071s] Sorting trace points... [1.724s] Computing alignments... [69.882s] Deallocating buffers... [0.044s] Loading trace points... [0.002s] Sorting trace points... [2.404s] Computing alignments... [66.891s] Deallocating buffers... [0.04s] Loading trace points... [0.059s] Sorting trace points... [1.748s] Computing alignments... [65.316s] Deallocating buffers... [0.045s] Loading trace points... [0.073s] Sorting trace points... [2.007s] Computing alignments... [64.598s] Deallocating buffers... [0.045s] Loading trace points... [0.072s] Sorting trace points... [2.294s] Computing alignments... [69.215s] Deallocating buffers... [0.046s] Loading trace points... [0.08s] Sorting trace points... [1.558s] Computing alignments... [69.436s] Deallocating buffers... [0.033s] Loading trace points... [0.057s] Sorting trace points... [2.172s] Computing alignments... [68.268s] Deallocating buffers... [0.046s] Loading trace points... [0.071s] Sorting trace points... [2.551s] Computing alignments... [66.625s] Deallocating buffers... [0.255s] Loading trace points... [0.058s] Sorting trace points... [2.422s] Computing alignments... [67.376s] Deallocating buffers... [0.148s] Loading trace points... [0.057s] Sorting trace points... [2.125s] Computing alignments... [66.496s] Deallocating buffers... [0.067s] Loading trace points... [0.047s] Sorting trace points... [1.649s] Computing alignments... [68.438s] Deallocating buffers... [0.05s] Loading trace points... [0.042s] Sorting trace points... [2.214s] Computing alignments... [67.473s] Deallocating buffers... [0.062s] Loading trace points... [0s] Sorting trace points... [2.016s] Computing alignments... [67.069s] Deallocating buffers... [0.049s] Loading trace points... [0s] [1123.24s] Deallocating reference... [0.094s] Loading reference sequences... [257.133s] Masking reference... [31.243s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.3s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.28s] Building query seed array... [1.747s] Computing hash join... [5.031s] Masking low complexity seeds... [0.187s] Searching alignments... [572.855s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.5s] Building query seed array... [1.994s] Computing hash join... [5.322s] Masking low complexity seeds... [0.193s] Searching alignments... [241.736s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.586s] Building query seed array... [2.12s] Computing hash join... [4.94s] Masking low complexity seeds... [0.194s] Searching alignments... [181.255s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.874s] Building query seed array... [1.662s] Computing hash join... [5.392s] Masking low complexity seeds... [0.196s] Searching alignments... [186.678s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.475s] Building query seed array... [1.586s] Computing hash join... [5.057s] Masking low complexity seeds... [0.172s] Searching alignments... [269.276s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.529s] Building query seed array... [1.789s] Computing hash join... [5.317s] Masking low complexity seeds... [0.185s] Searching alignments... [202.538s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.241s] Building query seed array... [1.851s] Computing hash join... [5.228s] Masking low complexity seeds... [0.183s] Searching alignments... [149.345s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.909s] Building query seed array... [1.59s] Computing hash join... [5.265s] Masking low complexity seeds... [0.185s] Searching alignments... [152.915s] Deallocating memory... [0s] Deallocating buffers... [0.161s] Clearing query masking... [1.214s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.082s] Sorting trace points... [1.949s] Computing alignments... [70.333s] Deallocating buffers... [0.07s] Loading trace points... [0.053s] Sorting trace points... [1.957s] Computing alignments... [71.135s] Deallocating buffers... [0.065s] Loading trace points... [0.808s] Sorting trace points... [2.036s] Computing alignments... [70.114s] Deallocating buffers... [0.071s] Loading trace points... [0.054s] Sorting trace points... [1.73s] Computing alignments... [74.102s] Deallocating buffers... [0.089s] Loading trace points... [0.072s] Sorting trace points... [1.98s] Computing alignments... [71.406s] Deallocating buffers... [0.066s] Loading trace points... [0.001s] Sorting trace points... [1.53s] Computing alignments... [69.343s] Deallocating buffers... [0.061s] Loading trace points... [0.088s] Sorting trace points... [1.535s] Computing alignments... [68.195s] Deallocating buffers... [0.071s] Loading trace points... [0.096s] Sorting trace points... [2.222s] Computing alignments... [72.962s] Deallocating buffers... [0.07s] Loading trace points... [0.079s] Sorting trace points... [1.795s] Computing alignments... [73.618s] Deallocating buffers... [0.046s] Loading trace points... [0.055s] Sorting trace points... [1.919s] Computing alignments... [72.359s] Deallocating buffers... [0.066s] Loading trace points... [0.092s] Sorting trace points... [1.551s] Computing alignments... [71.259s] Deallocating buffers... [0.058s] Loading trace points... [0.046s] Sorting trace points... [2.076s] Computing alignments... [72.51s] Deallocating buffers... [0.072s] Loading trace points... [0.044s] Sorting trace points... [1.633s] Computing alignments... [70.248s] Deallocating buffers... [0.06s] Loading trace points... [0.048s] Sorting trace points... [1.61s] Computing alignments... [73.611s] Deallocating buffers... [0.061s] Loading trace points... [0.066s] Sorting trace points... [1.687s] Computing alignments... [72.042s] Deallocating buffers... [0.067s] Loading trace points... [0s] Sorting trace points... [1.722s] Computing alignments... [71.737s] Deallocating buffers... [0.065s] Loading trace points... [0s] [1187.7s] Deallocating reference... [0.09s] Loading reference sequences... [255.121s] Masking reference... [31.645s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.666s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.42s] Building query seed array... [1.791s] Computing hash join... [5.401s] Masking low complexity seeds... [0.191s] Searching alignments... [572.359s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.761s] Building query seed array... [2.156s] Computing hash join... [5.379s] Masking low complexity seeds... [0.191s] Searching alignments... [244.748s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.423s] Building query seed array... [2.076s] Computing hash join... [4.828s] Masking low complexity seeds... [0.188s] Searching alignments... [182.26s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.516s] Building query seed array... [1.786s] Computing hash join... [5.217s] Masking low complexity seeds... [0.198s] Searching alignments... [184.766s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.153s] Building query seed array... [1.64s] Computing hash join... [5.168s] Masking low complexity seeds... [0.175s] Searching alignments... [268.119s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.392s] Building query seed array... [1.807s] Computing hash join... [5.153s] Masking low complexity seeds... [0.178s] Searching alignments... [202.335s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.194s] Building query seed array... [1.958s] Computing hash join... [5.159s] Masking low complexity seeds... [0.173s] Searching alignments... [148.432s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.901s] Building query seed array... [1.657s] Computing hash join... [4.723s] Masking low complexity seeds... [0.17s] Searching alignments... [153.648s] Deallocating memory... [0s] Deallocating buffers... [0.315s] Clearing query masking... [1.171s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.941s] Sorting trace points... [2.075s] Computing alignments... [68.675s] Deallocating buffers... [0.043s] Loading trace points... [0.483s] Sorting trace points... [2.102s] Computing alignments... [69.91s] Deallocating buffers... [0.051s] Loading trace points... [0.081s] Sorting trace points... [2.078s] Computing alignments... [68.227s] Deallocating buffers... [0.142s] Loading trace points... [0.081s] Sorting trace points... [1.706s] Computing alignments... [72.516s] Deallocating buffers... [0.041s] Loading trace points... [0.066s] Sorting trace points... [2.205s] Computing alignments... [69.423s] Deallocating buffers... [0.037s] Loading trace points... [0.065s] Sorting trace points... [1.718s] Computing alignments... [67.968s] Deallocating buffers... [0.03s] Loading trace points... [0.069s] Sorting trace points... [1.956s] Computing alignments... [66.183s] Deallocating buffers... [0.049s] Loading trace points... [0.063s] Sorting trace points... [2.176s] Computing alignments... [71.3s] Deallocating buffers... [0.05s] Loading trace points... [0.073s] Sorting trace points... [2.132s] Computing alignments... [71.476s] Deallocating buffers... [0.047s] Loading trace points... [0.11s] Sorting trace points... [1.978s] Computing alignments... [69.856s] Deallocating buffers... [0.05s] Loading trace points... [0.055s] Sorting trace points... [2.141s] Computing alignments... [69.756s] Deallocating buffers... [0.032s] Loading trace points... [0.057s] Sorting trace points... [1.711s] Computing alignments... [71.238s] Deallocating buffers... [0.049s] Loading trace points... [0.08s] Sorting trace points... [2.052s] Computing alignments... [69.228s] Deallocating buffers... [0.047s] Loading trace points... [0.082s] Sorting trace points... [1.952s] Computing alignments... [71.632s] Deallocating buffers... [0.028s] Loading trace points... [0.056s] Sorting trace points... [1.828s] Computing alignments... [69.848s] Deallocating buffers... [0.045s] Loading trace points... [0s] Sorting trace points... [1.855s] Computing alignments... [69.541s] Deallocating buffers... [0.049s] Loading trace points... [0s] [1161.75s] Deallocating reference... [0.088s] Loading reference sequences... [31.059s] Masking reference... [30.988s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.412s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.172s] Building query seed array... [1.78s] Computing hash join... [5.044s] Masking low complexity seeds... [0.185s] Searching alignments... [571.979s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.3s] Building query seed array... [1.978s] Computing hash join... [4.974s] Masking low complexity seeds... [0.181s] Searching alignments... [240.449s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.388s] Building query seed array... [2.759s] Computing hash join... [4.842s] Masking low complexity seeds... [0.177s] Searching alignments... [179.559s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.054s] Building query seed array... [1.723s] Computing hash join... [4.931s] Masking low complexity seeds... [0.18s] Searching alignments... [183.728s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.029s] Building query seed array... [1.533s] Computing hash join... [5.337s] Masking low complexity seeds... [0.181s] Searching alignments... [261.797s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.319s] Building query seed array... [1.784s] Computing hash join... [4.711s] Masking low complexity seeds... [0.167s] Searching alignments... [203.834s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.217s] Building query seed array... [1.877s] Computing hash join... [5.146s] Masking low complexity seeds... [0.171s] Searching alignments... [149.912s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.072s] Building query seed array... [1.591s] Computing hash join... [5.354s] Masking low complexity seeds... [0.187s] Searching alignments... [154.896s] Deallocating memory... [0s] Deallocating buffers... [0.156s] Clearing query masking... [1.188s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.956s] Sorting trace points... [2.092s] Computing alignments... [68.015s] Deallocating buffers... [0.049s] Loading trace points... [0.048s] Sorting trace points... [2.101s] Computing alignments... [70.181s] Deallocating buffers... [0.034s] Loading trace points... [0.06s] Sorting trace points... [1.653s] Computing alignments... [68.318s] Deallocating buffers... [0.044s] Loading trace points... [0.078s] Sorting trace points... [1.642s] Computing alignments... [72.902s] Deallocating buffers... [0.042s] Loading trace points... [0.069s] Sorting trace points... [1.506s] Computing alignments... [69.412s] Deallocating buffers... [0.04s] Loading trace points... [0.055s] Sorting trace points... [1.592s] Computing alignments... [68.03s] Deallocating buffers... [0.035s] Loading trace points... [0.045s] Sorting trace points... [1.578s] Computing alignments... [66.267s] Deallocating buffers... [0.04s] Loading trace points... [0.057s] Sorting trace points... [2.436s] Computing alignments... [72.05s] Deallocating buffers... [0.233s] Loading trace points... [0.084s] Sorting trace points... [1.885s] Computing alignments... [71.31s] Deallocating buffers... [0.194s] Loading trace points... [0.089s] Sorting trace points... [2.146s] Computing alignments... [70.1s] Deallocating buffers... [0.053s] Loading trace points... [0.052s] Sorting trace points... [2.097s] Computing alignments... [69.654s] Deallocating buffers... [0.038s] Loading trace points... [0.082s] Sorting trace points... [1.652s] Computing alignments... [72.157s] Deallocating buffers... [0.03s] Loading trace points... [0.091s] Sorting trace points... [2.063s] Computing alignments... [69.396s] Deallocating buffers... [0.049s] Loading trace points... [0.076s] Sorting trace points... [2.228s] Computing alignments... [71.761s] Deallocating buffers... [0.032s] Loading trace points... [0.078s] Sorting trace points... [2.296s] Computing alignments... [70.462s] Deallocating buffers... [0.226s] Loading trace points... [0s] Sorting trace points... [2.132s] Computing alignments... [70.269s] Deallocating buffers... [0.047s] Loading trace points... [0s] [1164.6s] Deallocating reference... [0.097s] Loading reference sequences... [29.591s] Masking reference... [31.803s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.918s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.958s] Building query seed array... [1.785s] Computing hash join... [5.386s] Masking low complexity seeds... [0.191s] Searching alignments... [573.834s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.668s] Building query seed array... [2.328s] Computing hash join... [4.99s] Masking low complexity seeds... [0.182s] Searching alignments... [240.687s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.643s] Building query seed array... [2.246s] Computing hash join... [4.87s] Masking low complexity seeds... [0.176s] Searching alignments... [180.467s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.197s] Building query seed array... [1.79s] Computing hash join... [4.785s] Masking low complexity seeds... [0.188s] Searching alignments... [182.335s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.178s] Building query seed array... [1.626s] Computing hash join... [4.761s] Masking low complexity seeds... [0.19s] Searching alignments... [261.082s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.679s] Building query seed array... [1.965s] Computing hash join... [5.318s] Masking low complexity seeds... [0.171s] Searching alignments... [202.067s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.786s] Building query seed array... [2.12s] Computing hash join... [5.181s] Masking low complexity seeds... [0.182s] Searching alignments... [147.89s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.216s] Building query seed array... [1.835s] Computing hash join... [5.377s] Masking low complexity seeds... [0.228s] Searching alignments... [156.094s] Deallocating memory... [0s] Deallocating buffers... [0.989s] Clearing query masking... [1.177s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.215s] Sorting trace points... [1.456s] Computing alignments... [65.765s] Deallocating buffers... [0.05s] Loading trace points... [0.101s] Sorting trace points... [1.951s] Computing alignments... [66.532s] Deallocating buffers... [0.161s] Loading trace points... [0.062s] Sorting trace points... [2.105s] Computing alignments... [65.804s] Deallocating buffers... [0.042s] Loading trace points... [0.617s] Sorting trace points... [1.82s] Computing alignments... [69.556s] Deallocating buffers... [0.044s] Loading trace points... [0.054s] Sorting trace points... [1.518s] Computing alignments... [65.884s] Deallocating buffers... [0.04s] Loading trace points... [0.071s] Sorting trace points... [2.104s] Computing alignments... [65.063s] Deallocating buffers... [0.043s] Loading trace points... [0.077s] Sorting trace points... [1.608s] Computing alignments... [63.553s] Deallocating buffers... [0.047s] Loading trace points... [0.05s] Sorting trace points... [2.134s] Computing alignments... [68.389s] Deallocating buffers... [0.047s] Loading trace points... [0.082s] Sorting trace points... [1.649s] Computing alignments... [68.802s] Deallocating buffers... [0.04s] Loading trace points... [0.092s] Sorting trace points... [2.24s] Computing alignments... [67.658s] Deallocating buffers... [0.09s] Loading trace points... [0.048s] Sorting trace points... [2.08s] Computing alignments... [66.192s] Deallocating buffers... [0.053s] Loading trace points... [0.074s] Sorting trace points... [2.159s] Computing alignments... [67.203s] Deallocating buffers... [0.045s] Loading trace points... [0.091s] Sorting trace points... [2.148s] Computing alignments... [66.082s] Deallocating buffers... [0.042s] Loading trace points... [0.061s] Sorting trace points... [2.531s] Computing alignments... [68.253s] Deallocating buffers... [0.332s] Loading trace points... [0.064s] Sorting trace points... [1.616s] Computing alignments... [67.088s] Deallocating buffers... [0.045s] Loading trace points... [0s] Sorting trace points... [2.063s] Computing alignments... [67.05s] Deallocating buffers... [0.052s] Loading trace points... [0s] [1114.17s] Deallocating reference... [0.076s] Loading reference sequences... [33.251s] Masking reference... [31.066s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.095s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.01s] Building query seed array... [1.728s] Computing hash join... [5.329s] Masking low complexity seeds... [0.187s] Searching alignments... [574.611s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.904s] Building query seed array... [1.947s] Computing hash join... [5.465s] Masking low complexity seeds... [0.192s] Searching alignments... [245.751s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.955s] Building query seed array... [2.07s] Computing hash join... [5.16s] Masking low complexity seeds... [0.19s] Searching alignments... [180.808s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.383s] Building query seed array... [1.748s] Computing hash join... [5.146s] Masking low complexity seeds... [0.194s] Searching alignments... [183.347s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.741s] Building query seed array... [1.507s] Computing hash join... [5.27s] Masking low complexity seeds... [0.188s] Searching alignments... [264.844s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.418s] Building query seed array... [1.775s] Computing hash join... [5.249s] Masking low complexity seeds... [0.18s] Searching alignments... [203.694s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.878s] Building query seed array... [1.837s] Computing hash join... [5.277s] Masking low complexity seeds... [0.186s] Searching alignments... [153.082s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.963s] Building query seed array... [1.613s] Computing hash join... [5.36s] Masking low complexity seeds... [0.185s] Searching alignments... [161.476s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.222s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.928s] Sorting trace points... [2.168s] Computing alignments... [66.467s] Deallocating buffers... [0.067s] Loading trace points... [0.065s] Sorting trace points... [1.73s] Computing alignments... [67.715s] Deallocating buffers... [0.063s] Loading trace points... [0.08s] Sorting trace points... [1.58s] Computing alignments... [66.449s] Deallocating buffers... [0.062s] Loading trace points... [0.067s] Sorting trace points... [2.269s] Computing alignments... [70.001s] Deallocating buffers... [0.1s] Loading trace points... [0.107s] Sorting trace points... [2.479s] Computing alignments... [67.579s] Deallocating buffers... [0.343s] Loading trace points... [0.085s] Sorting trace points... [2.245s] Computing alignments... [65.994s] Deallocating buffers... [0.168s] Loading trace points... [0.066s] Sorting trace points... [2.124s] Computing alignments... [64.369s] Deallocating buffers... [0.204s] Loading trace points... [0.107s] Sorting trace points... [2.003s] Computing alignments... [69.385s] Deallocating buffers... [0.055s] Loading trace points... [0.047s] Sorting trace points... [2.326s] Computing alignments... [69.843s] Deallocating buffers... [0.196s] Loading trace points... [0.087s] Sorting trace points... [1.788s] Computing alignments... [67.967s] Deallocating buffers... [0.061s] Loading trace points... [0.06s] Sorting trace points... [1.544s] Computing alignments... [66.907s] Deallocating buffers... [0.051s] Loading trace points... [0.073s] Sorting trace points... [1.956s] Computing alignments... [67.442s] Deallocating buffers... [0.045s] Loading trace points... [0.795s] Sorting trace points... [2.275s] Computing alignments... [66.998s] Deallocating buffers... [0.222s] Loading trace points... [0.077s] Sorting trace points... [2.063s] Computing alignments... [69.124s] Deallocating buffers... [0.061s] Loading trace points... [0.055s] Sorting trace points... [2.078s] Computing alignments... [68.16s] Deallocating buffers... [0.045s] Loading trace points... [0s] Sorting trace points... [1.988s] Computing alignments... [68.463s] Deallocating buffers... [0.075s] Loading trace points... [0s] [1130.15s] Deallocating reference... [0.085s] Loading reference sequences... [30.929s] Masking reference... [31.929s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.359s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.162s] Building query seed array... [1.773s] Computing hash join... [5.787s] Masking low complexity seeds... [0.197s] Searching alignments... [572.901s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.162s] Building query seed array... [2.432s] Computing hash join... [5.658s] Masking low complexity seeds... [0.21s] Searching alignments... [240.869s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.295s] Building query seed array... [2.203s] Computing hash join... [4.883s] Masking low complexity seeds... [0.198s] Searching alignments... [180.903s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.58s] Building query seed array... [1.813s] Computing hash join... [4.909s] Masking low complexity seeds... [0.203s] Searching alignments... [182.798s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.216s] Building query seed array... [1.663s] Computing hash join... [5.044s] Masking low complexity seeds... [0.181s] Searching alignments... [263.778s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.75s] Building query seed array... [1.9s] Computing hash join... [4.803s] Masking low complexity seeds... [0.174s] Searching alignments... [209.535s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.909s] Building query seed array... [1.97s] Computing hash join... [5.604s] Masking low complexity seeds... [0.191s] Searching alignments... [148.426s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.596s] Building query seed array... [1.696s] Computing hash join... [5.322s] Masking low complexity seeds... [0.189s] Searching alignments... [154.371s] Deallocating memory... [0s] Deallocating buffers... [1.295s] Clearing query masking... [1.302s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.901s] Sorting trace points... [2.206s] Computing alignments... [59.937s] Deallocating buffers... [0.037s] Loading trace points... [0.052s] Sorting trace points... [2.073s] Computing alignments... [60.858s] Deallocating buffers... [0.042s] Loading trace points... [0.068s] Sorting trace points... [1.555s] Computing alignments... [61.29s] Deallocating buffers... [0.174s] Loading trace points... [0.062s] Sorting trace points... [1.761s] Computing alignments... [63.698s] Deallocating buffers... [0.042s] Loading trace points... [0.094s] Sorting trace points... [1.679s] Computing alignments... [60.79s] Deallocating buffers... [0.038s] Loading trace points... [0.075s] Sorting trace points... [2.136s] Computing alignments... [60.032s] Deallocating buffers... [0.048s] Loading trace points... [0.075s] Sorting trace points... [2.125s] Computing alignments... [58.801s] Deallocating buffers... [0.032s] Loading trace points... [0.551s] Sorting trace points... [1.641s] Computing alignments... [63.576s] Deallocating buffers... [0.149s] Loading trace points... [0.078s] Sorting trace points... [2.178s] Computing alignments... [62.339s] Deallocating buffers... [0.038s] Loading trace points... [0.081s] Sorting trace points... [1.614s] Computing alignments... [62.013s] Deallocating buffers... [0.055s] Loading trace points... [0.07s] Sorting trace points... [2.106s] Computing alignments... [61.403s] Deallocating buffers... [0.037s] Loading trace points... [0.1s] Sorting trace points... [1.762s] Computing alignments... [62.495s] Deallocating buffers... [0.044s] Loading trace points... [0.07s] Sorting trace points... [2.171s] Computing alignments... [61.116s] Deallocating buffers... [0.038s] Loading trace points... [0.071s] Sorting trace points... [2.156s] Computing alignments... [62.784s] Deallocating buffers... [0.044s] Loading trace points... [0.065s] Sorting trace points... [2.058s] Computing alignments... [61.802s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [1.773s] Computing alignments... [61.44s] Deallocating buffers... [0.042s] Loading trace points... [0s] [1028.87s] Deallocating reference... [0.065s] Loading reference sequences... [29.048s] Masking reference... [30.88s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.102s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.349s] Building query seed array... [1.767s] Computing hash join... [5.939s] Masking low complexity seeds... [0.193s] Searching alignments... [573.432s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.235s] Building query seed array... [2.141s] Computing hash join... [5.65s] Masking low complexity seeds... [0.191s] Searching alignments... [244.874s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.317s] Building query seed array... [2.157s] Computing hash join... [5.517s] Masking low complexity seeds... [0.2s] Searching alignments... [180.466s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.262s] Building query seed array... [1.809s] Computing hash join... [5.223s] Masking low complexity seeds... [0.182s] Searching alignments... [186.349s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.301s] Building query seed array... [1.7s] Computing hash join... [4.713s] Masking low complexity seeds... [0.191s] Searching alignments... [270.245s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.985s] Building query seed array... [1.915s] Computing hash join... [4.889s] Masking low complexity seeds... [0.178s] Searching alignments... [204.907s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.01s] Building query seed array... [2.066s] Computing hash join... [4.982s] Masking low complexity seeds... [0.183s] Searching alignments... [150.307s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.61s] Building query seed array... [1.759s] Computing hash join... [5.316s] Masking low complexity seeds... [0.177s] Searching alignments... [155.143s] Deallocating memory... [0s] Deallocating buffers... [1.116s] Clearing query masking... [1.17s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.44s] Sorting trace points... [2.079s] Computing alignments... [72.14s] Deallocating buffers... [0.098s] Loading trace points... [0.058s] Sorting trace points... [1.927s] Computing alignments... [74.273s] Deallocating buffers... [0.082s] Loading trace points... [0.003s] Sorting trace points... [2.033s] Computing alignments... [72.75s] Deallocating buffers... [0.071s] Loading trace points... [0.06s] Sorting trace points... [1.787s] Computing alignments... [77.136s] Deallocating buffers... [0.079s] Loading trace points... [0.07s] Sorting trace points... [1.612s] Computing alignments... [73.795s] Deallocating buffers... [0.079s] Loading trace points... [0.103s] Sorting trace points... [1.612s] Computing alignments... [72.148s] Deallocating buffers... [0.082s] Loading trace points... [0.084s] Sorting trace points... [1.528s] Computing alignments... [69.886s] Deallocating buffers... [0.086s] Loading trace points... [0.095s] Sorting trace points... [2.652s] Computing alignments... [75.331s] Deallocating buffers... [0.256s] Loading trace points... [0.069s] Sorting trace points... [2.008s] Computing alignments... [76.243s] Deallocating buffers... [0.2s] Loading trace points... [0.049s] Sorting trace points... [1.604s] Computing alignments... [73.656s] Deallocating buffers... [0.08s] Loading trace points... [0.064s] Sorting trace points... [1.732s] Computing alignments... [73.294s] Deallocating buffers... [0.06s] Loading trace points... [0.054s] Sorting trace points... [2.008s] Computing alignments... [74.77s] Deallocating buffers... [0.176s] Loading trace points... [0.072s] Sorting trace points... [1.802s] Computing alignments... [72.893s] Deallocating buffers... [0.073s] Loading trace points... [0.046s] Sorting trace points... [2.049s] Computing alignments... [76.628s] Deallocating buffers... [0.081s] Loading trace points... [0.08s] Sorting trace points... [2.212s] Computing alignments... [74.372s] Deallocating buffers... [0.083s] Loading trace points... [0s] Sorting trace points... [1.735s] Computing alignments... [73.692s] Deallocating buffers... [0.071s] Loading trace points... [0s] [1227.5s] Deallocating reference... [0.079s] Loading reference sequences... [251.202s] Masking reference... [31.086s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.496s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.227s] Building query seed array... [1.736s] Computing hash join... [5.092s] Masking low complexity seeds... [0.19s] Searching alignments... [578.664s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.353s] Building query seed array... [1.993s] Computing hash join... [5.106s] Masking low complexity seeds... [0.187s] Searching alignments... [243.808s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.066s] Building query seed array... [2.037s] Computing hash join... [5.076s] Masking low complexity seeds... [0.182s] Searching alignments... [180.388s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.924s] Building query seed array... [1.686s] Computing hash join... [5.196s] Masking low complexity seeds... [0.196s] Searching alignments... [183.097s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.953s] Building query seed array... [1.577s] Computing hash join... [5.306s] Masking low complexity seeds... [0.198s] Searching alignments... [261.183s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.346s] Building query seed array... [1.778s] Computing hash join... [5.274s] Masking low complexity seeds... [0.179s] Searching alignments... [201.273s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.126s] Building query seed array... [1.883s] Computing hash join... [5.063s] Masking low complexity seeds... [0.178s] Searching alignments... [151.148s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.138s] Building query seed array... [1.661s] Computing hash join... [5.279s] Masking low complexity seeds... [0.195s] Searching alignments... [152.282s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.187s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.137s] Sorting trace points... [2.119s] Computing alignments... [69.642s] Deallocating buffers... [0.061s] Loading trace points... [0.066s] Sorting trace points... [2.057s] Computing alignments... [71.038s] Deallocating buffers... [0.054s] Loading trace points... [0.064s] Sorting trace points... [2.225s] Computing alignments... [69.672s] Deallocating buffers... [0.054s] Loading trace points... [0.071s] Sorting trace points... [2.267s] Computing alignments... [73.911s] Deallocating buffers... [0.06s] Loading trace points... [0.058s] Sorting trace points... [1.767s] Computing alignments... [70.738s] Deallocating buffers... [0.054s] Loading trace points... [0.059s] Sorting trace points... [1.721s] Computing alignments... [68.942s] Deallocating buffers... [0.054s] Loading trace points... [0.05s] Sorting trace points... [2.151s] Computing alignments... [67.367s] Deallocating buffers... [0.056s] Loading trace points... [0.101s] Sorting trace points... [2.169s] Computing alignments... [72.952s] Deallocating buffers... [0.318s] Loading trace points... [0.042s] Sorting trace points... [1.72s] Computing alignments... [73.339s] Deallocating buffers... [0.059s] Loading trace points... [0.087s] Sorting trace points... [1.574s] Computing alignments... [71.612s] Deallocating buffers... [0.057s] Loading trace points... [0.043s] Sorting trace points... [2.13s] Computing alignments... [70.835s] Deallocating buffers... [0.048s] Loading trace points... [0.063s] Sorting trace points... [2.077s] Computing alignments... [71.735s] Deallocating buffers... [0.055s] Loading trace points... [0.062s] Sorting trace points... [1.65s] Computing alignments... [71.303s] Deallocating buffers... [0.052s] Loading trace points... [0.051s] Sorting trace points... [1.6s] Computing alignments... [73.053s] Deallocating buffers... [0.06s] Loading trace points... [0.052s] Sorting trace points... [1.709s] Computing alignments... [71.561s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [2.109s] Computing alignments... [71.301s] Deallocating buffers... [0.055s] Loading trace points... [0s] [1183.34s] Deallocating reference... [0.087s] Loading reference sequences... [29.219s] Masking reference... [30.854s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.006s] Building reference histograms... [32.603s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.001s] Building query seed array... [1.707s] Computing hash join... [5.852s] Masking low complexity seeds... [0.187s] Searching alignments... [580.68s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.701s] Building query seed array... [2.45s] Computing hash join... [5.003s] Masking low complexity seeds... [0.195s] Searching alignments... [241.851s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.664s] Building query seed array... [2.222s] Computing hash join... [4.933s] Masking low complexity seeds... [0.197s] Searching alignments... [180.166s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.587s] Building query seed array... [1.883s] Computing hash join... [5.238s] Masking low complexity seeds... [0.22s] Searching alignments... [182.351s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.215s] Building query seed array... [1.766s] Computing hash join... [5.208s] Masking low complexity seeds... [0.193s] Searching alignments... [264.88s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.134s] Building query seed array... [1.907s] Computing hash join... [5.269s] Masking low complexity seeds... [0.193s] Searching alignments... [209.489s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.535s] Building query seed array... [2.118s] Computing hash join... [4.962s] Masking low complexity seeds... [0.19s] Searching alignments... [151.029s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.257s] Building query seed array... [1.847s] Computing hash join... [5.274s] Masking low complexity seeds... [0.186s] Searching alignments... [156.787s] Deallocating memory... [0s] Deallocating buffers... [1.477s] Clearing query masking... [1.165s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [11.259s] Sorting trace points... [2.003s] Computing alignments... [65.509s] Deallocating buffers... [0.048s] Loading trace points... [0.078s] Sorting trace points... [2.092s] Computing alignments... [66.351s] Deallocating buffers... [0.037s] Loading trace points... [0.094s] Sorting trace points... [2.075s] Computing alignments... [66.184s] Deallocating buffers... [0.045s] Loading trace points... [0.058s] Sorting trace points... [2.124s] Computing alignments... [69.223s] Deallocating buffers... [0.197s] Loading trace points... [0.062s] Sorting trace points... [2.054s] Computing alignments... [66.669s] Deallocating buffers... [0.025s] Loading trace points... [0.083s] Sorting trace points... [2.151s] Computing alignments... [65.432s] Deallocating buffers... [0.042s] Loading trace points... [0.061s] Sorting trace points... [2.059s] Computing alignments... [64.169s] Deallocating buffers... [0.038s] Loading trace points... [0.055s] Sorting trace points... [2.297s] Computing alignments... [68.789s] Deallocating buffers... [0.045s] Loading trace points... [0.093s] Sorting trace points... [2.299s] Computing alignments... [68.619s] Deallocating buffers... [0.303s] Loading trace points... [0.002s] Sorting trace points... [1.89s] Computing alignments... [67.181s] Deallocating buffers... [0.03s] Loading trace points... [0.067s] Sorting trace points... [1.565s] Computing alignments... [66.825s] Deallocating buffers... [0.043s] Loading trace points... [0.099s] Sorting trace points... [1.773s] Computing alignments... [68.174s] Deallocating buffers... [0.032s] Loading trace points... [0.072s] Sorting trace points... [2.208s] Computing alignments... [66.133s] Deallocating buffers... [0.074s] Loading trace points... [0.074s] Sorting trace points... [2.328s] Computing alignments... [69.205s] Deallocating buffers... [0.379s] Loading trace points... [0.084s] Sorting trace points... [2.154s] Computing alignments... [66.755s] Deallocating buffers... [0.158s] Loading trace points... [0s] Sorting trace points... [1.69s] Computing alignments... [67.079s] Deallocating buffers... [0.049s] Loading trace points... [0s] [1119.01s] Deallocating reference... [0.086s] Loading reference sequences... [24.33s] Masking reference... [25.142s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.068s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.564s] Building query seed array... [1.744s] Computing hash join... [4.005s] Masking low complexity seeds... [0.174s] Searching alignments... [457.35s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.803s] Building query seed array... [1.968s] Computing hash join... [4.344s] Masking low complexity seeds... [0.171s] Searching alignments... [198.352s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.517s] Building query seed array... [2.081s] Computing hash join... [4.024s] Masking low complexity seeds... [0.185s] Searching alignments... [146.268s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.183s] Building query seed array... [1.685s] Computing hash join... [3.998s] Masking low complexity seeds... [0.177s] Searching alignments... [145.254s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.038s] Building query seed array... [1.53s] Computing hash join... [3.854s] Masking low complexity seeds... [0.16s] Searching alignments... [211.545s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.817s] Building query seed array... [1.729s] Computing hash join... [3.836s] Masking low complexity seeds... [0.155s] Searching alignments... [164.076s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.981s] Building query seed array... [1.927s] Computing hash join... [3.85s] Masking low complexity seeds... [0.163s] Searching alignments... [119.608s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.354s] Building query seed array... [1.622s] Computing hash join... [3.861s] Masking low complexity seeds... [0.163s] Searching alignments... [123.719s] Deallocating memory... [0s] Deallocating buffers... [0.119s] Clearing query masking... [1.243s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.295s] Sorting trace points... [1.732s] Computing alignments... [50.883s] Deallocating buffers... [0.03s] Loading trace points... [0.496s] Sorting trace points... [1.401s] Computing alignments... [51.804s] Deallocating buffers... [0.031s] Loading trace points... [0.07s] Sorting trace points... [1.513s] Computing alignments... [51.453s] Deallocating buffers... [0.033s] Loading trace points... [0.058s] Sorting trace points... [1.392s] Computing alignments... [54.113s] Deallocating buffers... [0.034s] Loading trace points... [0.058s] Sorting trace points... [1.638s] Computing alignments... [51.352s] Deallocating buffers... [0.034s] Loading trace points... [0.062s] Sorting trace points... [1.282s] Computing alignments... [50.435s] Deallocating buffers... [0.033s] Loading trace points... [0.089s] Sorting trace points... [1.312s] Computing alignments... [49.751s] Deallocating buffers... [0.024s] Loading trace points... [0.067s] Sorting trace points... [1.388s] Computing alignments... [53.113s] Deallocating buffers... [0.042s] Loading trace points... [0.003s] Sorting trace points... [1.648s] Computing alignments... [53.601s] Deallocating buffers... [0.036s] Loading trace points... [0.059s] Sorting trace points... [1.746s] Computing alignments... [52.236s] Deallocating buffers... [0.031s] Loading trace points... [0.055s] Sorting trace points... [1.678s] Computing alignments... [51.453s] Deallocating buffers... [0.031s] Loading trace points... [0.071s] Sorting trace points... [1.421s] Computing alignments... [52.141s] Deallocating buffers... [0.023s] Loading trace points... [0.05s] Sorting trace points... [1.254s] Computing alignments... [51.683s] Deallocating buffers... [0.033s] Loading trace points... [0.065s] Sorting trace points... [1.761s] Computing alignments... [52.834s] Deallocating buffers... [0.095s] Loading trace points... [0.097s] Sorting trace points... [1.754s] Computing alignments... [52.381s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.611s] Computing alignments... [51.845s] Deallocating buffers... [0.038s] Loading trace points... [0s] [866.905s] Deallocating reference... [0.078s] Loading reference sequences... [0.09s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [4175.59s] [4175.59s] Deallocating queries... [0.057s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.921s] [3.709s] Closing the database... [0s] Cleaning up... [0s] Total time = 51071.3s Reported 4538224469 pairwise alignments, 4538224469 HSPs. 4177884 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-06.trimmed.R1.fastq.gz complete: CH05-06.trimmed.R1.blastx.meganized.daa Now MEGANizing CH05-06.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-06.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (322.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7,002.3s) Total reads: 4,177,884 With hits: 4,177,884 Alignments: 3,105,653,450 Assig. Taxonomy: 2,156,723 Assig. SEED: 96,035 Assig. EGGNOG: 22,682 Assig. GTDB: 187,114 Assig. EC: 381,665 Assig. INTERPRO2GO: 1,017,526 MinSupport set to: 2088 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 5,260 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.3s) Min-supp. changes: 3,818 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.0s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 169 Class. SEED: 481 Class. EGGNOG: 1,634 Class. GTDB: 53 Class. EC: 2,340 Class. INTERPRO2GO: 8,465 Total time: 7,351s Peak memory: 40 of 195.3G MEGANization of CH05-06.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-06.trimmed.R2.fastq.gz... c5ce034ce101d502a37f79cdd059828f /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-06.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-06.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.31s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.784s] Opening the output file... [0s] Loading query sequences... [75.071s] Masking queries... [19.872s] Algorithm: Double-indexed Building query histograms... [16.022s] Loading reference sequences... [29.957s] Masking reference... [31.933s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.345s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.203s] Building query seed array... [1.747s] Computing hash join... [5.885s] Masking low complexity seeds... [0.179s] Searching alignments... [600.42s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.749s] Building query seed array... [2.204s] Computing hash join... [4.802s] Masking low complexity seeds... [0.184s] Searching alignments... [254.86s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.5s] Building query seed array... [2.217s] Computing hash join... [5.008s] Masking low complexity seeds... [0.193s] Searching alignments... [183.361s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.624s] Building query seed array... [1.829s] Computing hash join... [5.084s] Masking low complexity seeds... [0.188s] Searching alignments... [185.821s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.119s] Building query seed array... [1.799s] Computing hash join... [5.319s] Masking low complexity seeds... [0.204s] Searching alignments... [283.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.474s] Building query seed array... [1.914s] Computing hash join... [5.343s] Masking low complexity seeds... [0.213s] Searching alignments... [212.615s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.226s] Building query seed array... [2.05s] Computing hash join... [4.751s] Masking low complexity seeds... [0.17s] Searching alignments... [157.234s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.065s] Building query seed array... [1.65s] Computing hash join... [4.574s] Masking low complexity seeds... [0.182s] Searching alignments... [161.645s] Deallocating memory... [0s] Deallocating buffers... [1.349s] Clearing query masking... [1.231s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.316s] Sorting trace points... [2.184s] Computing alignments... [67.171s] Deallocating buffers... [0.042s] Loading trace points... [0.098s] Sorting trace points... [1.973s] Computing alignments... [67.726s] Deallocating buffers... [0.039s] Loading trace points... [0.059s] Sorting trace points... [2.246s] Computing alignments... [66.285s] Deallocating buffers... [0.047s] Loading trace points... [0.057s] Sorting trace points... [2.27s] Computing alignments... [68.328s] Deallocating buffers... [0.048s] Loading trace points... [0.056s] Sorting trace points... [2.153s] Computing alignments... [65.523s] Deallocating buffers... [0.044s] Loading trace points... [0.002s] Sorting trace points... [2.412s] Computing alignments... [66.133s] Deallocating buffers... [0.392s] Loading trace points... [0.09s] Sorting trace points... [1.602s] Computing alignments... [63.292s] Deallocating buffers... [0.041s] Loading trace points... [0.081s] Sorting trace points... [1.979s] Computing alignments... [67.353s] Deallocating buffers... [0.044s] Loading trace points... [0.091s] Sorting trace points... [2.123s] Computing alignments... [67.474s] Deallocating buffers... [0.046s] Loading trace points... [0.057s] Sorting trace points... [2.089s] Computing alignments... [67.215s] Deallocating buffers... [0.044s] Loading trace points... [0.081s] Sorting trace points... [2.179s] Computing alignments... [66.323s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [2.156s] Computing alignments... [68.397s] Deallocating buffers... [0.041s] Loading trace points... [0.055s] Sorting trace points... [1.651s] Computing alignments... [65.028s] Deallocating buffers... [0.029s] Loading trace points... [0.084s] Sorting trace points... [2.032s] Computing alignments... [65.558s] Deallocating buffers... [0.152s] Loading trace points... [0.051s] Sorting trace points... [2.387s] Computing alignments... [66.633s] Deallocating buffers... [0.328s] Loading trace points... [0s] Sorting trace points... [2.124s] Computing alignments... [64.427s] Deallocating buffers... [0.045s] Loading trace points... [0s] [1110.19s] Deallocating reference... [0.058s] Loading reference sequences... [29.383s] Masking reference... [30.872s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.006s] Building reference histograms... [32.693s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.186s] Building query seed array... [1.762s] Computing hash join... [5.251s] Masking low complexity seeds... [0.185s] Searching alignments... [590.322s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.434s] Building query seed array... [2.006s] Computing hash join... [4.828s] Masking low complexity seeds... [0.183s] Searching alignments... [247.24s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.578s] Building query seed array... [2.029s] Computing hash join... [5.364s] Masking low complexity seeds... [0.185s] Searching alignments... [185.211s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.835s] Building query seed array... [1.766s] Computing hash join... [5.417s] Masking low complexity seeds... [0.2s] Searching alignments... [183.951s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.196s] Building query seed array... [1.581s] Computing hash join... [4.756s] Masking low complexity seeds... [0.179s] Searching alignments... [273.561s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.235s] Building query seed array... [1.728s] Computing hash join... [4.703s] Masking low complexity seeds... [0.17s] Searching alignments... [207.482s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.426s] Building query seed array... [1.852s] Computing hash join... [5.248s] Masking low complexity seeds... [0.185s] Searching alignments... [154.226s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [1.597s] Computing hash join... [5.297s] Masking low complexity seeds... [0.182s] Searching alignments... [163.241s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [1.181s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.385s] Sorting trace points... [2.049s] Computing alignments... [69.886s] Deallocating buffers... [0.056s] Loading trace points... [0.056s] Sorting trace points... [2.193s] Computing alignments... [70.982s] Deallocating buffers... [0.048s] Loading trace points... [0.062s] Sorting trace points... [2.153s] Computing alignments... [69.737s] Deallocating buffers... [0.076s] Loading trace points... [0.056s] Sorting trace points... [2.126s] Computing alignments... [71.035s] Deallocating buffers... [0.058s] Loading trace points... [0.073s] Sorting trace points... [1.551s] Computing alignments... [68.431s] Deallocating buffers... [0.054s] Loading trace points... [0.093s] Sorting trace points... [1.795s] Computing alignments... [69.629s] Deallocating buffers... [0.059s] Loading trace points... [0.079s] Sorting trace points... [1.53s] Computing alignments... [66.7s] Deallocating buffers... [0.054s] Loading trace points... [0.08s] Sorting trace points... [1.864s] Computing alignments... [70.843s] Deallocating buffers... [0.055s] Loading trace points... [0.046s] Sorting trace points... [2.184s] Computing alignments... [71.818s] Deallocating buffers... [0.061s] Loading trace points... [0.066s] Sorting trace points... [1.732s] Computing alignments... [70.986s] Deallocating buffers... [0.087s] Loading trace points... [0.082s] Sorting trace points... [2.157s] Computing alignments... [69.933s] Deallocating buffers... [0.061s] Loading trace points... [0.073s] Sorting trace points... [1.634s] Computing alignments... [72.113s] Deallocating buffers... [0.055s] Loading trace points... [0.039s] Sorting trace points... [1.636s] Computing alignments... [68.613s] Deallocating buffers... [0.056s] Loading trace points... [0.062s] Sorting trace points... [2.172s] Computing alignments... [68.123s] Deallocating buffers... [0.047s] Loading trace points... [0.088s] Sorting trace points... [1.915s] Computing alignments... [69.402s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [1.949s] Computing alignments... [67.303s] Deallocating buffers... [0.055s] Loading trace points... [0s] [1159.59s] Deallocating reference... [0.08s] Loading reference sequences... [29.06s] Masking reference... [30.851s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.175s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.576s] Building query seed array... [1.781s] Computing hash join... [5.585s] Masking low complexity seeds... [0.197s] Searching alignments... [596.113s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.178s] Building query seed array... [2.274s] Computing hash join... [5.593s] Masking low complexity seeds... [0.199s] Searching alignments... [249.622s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.932s] Building query seed array... [2.247s] Computing hash join... [4.91s] Masking low complexity seeds... [0.181s] Searching alignments... [188.236s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.358s] Building query seed array... [1.906s] Computing hash join... [5.307s] Masking low complexity seeds... [0.202s] Searching alignments... [184.301s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.811s] Building query seed array... [1.667s] Computing hash join... [5.308s] Masking low complexity seeds... [0.179s] Searching alignments... [279.405s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.443s] Building query seed array... [1.895s] Computing hash join... [5.43s] Masking low complexity seeds... [0.176s] Searching alignments... [210.957s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.574s] Building query seed array... [2.034s] Computing hash join... [5.486s] Masking low complexity seeds... [0.181s] Searching alignments... [156.022s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.079s] Building query seed array... [1.8s] Computing hash join... [5.308s] Masking low complexity seeds... [0.192s] Searching alignments... [164.504s] Deallocating memory... [0s] Deallocating buffers... [1.087s] Clearing query masking... [1.178s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.242s] Sorting trace points... [2.179s] Computing alignments... [70.713s] Deallocating buffers... [0.074s] Loading trace points... [0.047s] Sorting trace points... [1.68s] Computing alignments... [71.553s] Deallocating buffers... [0.049s] Loading trace points... [0.064s] Sorting trace points... [1.975s] Computing alignments... [70.28s] Deallocating buffers... [0.057s] Loading trace points... [0.057s] Sorting trace points... [2.126s] Computing alignments... [70.786s] Deallocating buffers... [0.063s] Loading trace points... [0.089s] Sorting trace points... [1.654s] Computing alignments... [69.533s] Deallocating buffers... [0.043s] Loading trace points... [0.048s] Sorting trace points... [1.773s] Computing alignments... [70.201s] Deallocating buffers... [0.056s] Loading trace points... [0.061s] Sorting trace points... [2.06s] Computing alignments... [65.717s] Deallocating buffers... [0.049s] Loading trace points... [0.059s] Sorting trace points... [1.792s] Computing alignments... [71.146s] Deallocating buffers... [0.065s] Loading trace points... [0.069s] Sorting trace points... [2.206s] Computing alignments... [71.874s] Deallocating buffers... [0.062s] Loading trace points... [0.531s] Sorting trace points... [2.15s] Computing alignments... [71.144s] Deallocating buffers... [0.059s] Loading trace points... [0.083s] Sorting trace points... [2.08s] Computing alignments... [69.418s] Deallocating buffers... [0.073s] Loading trace points... [0.079s] Sorting trace points... [1.694s] Computing alignments... [73.607s] Deallocating buffers... [0.061s] Loading trace points... [0.122s] Sorting trace points... [1.914s] Computing alignments... [67.915s] Deallocating buffers... [0.105s] Loading trace points... [0.079s] Sorting trace points... [1.713s] Computing alignments... [68.783s] Deallocating buffers... [0.06s] Loading trace points... [0.499s] Sorting trace points... [1.595s] Computing alignments... [70.26s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [1.888s] Computing alignments... [67.071s] Deallocating buffers... [0.053s] Loading trace points... [0s] [1164.75s] Deallocating reference... [0.073s] Loading reference sequences... [29.054s] Masking reference... [30.853s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.035s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.367s] Building query seed array... [1.707s] Computing hash join... [5.094s] Masking low complexity seeds... [0.181s] Searching alignments... [598.763s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.255s] Building query seed array... [1.941s] Computing hash join... [5.574s] Masking low complexity seeds... [0.197s] Searching alignments... [248.559s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.061s] Building query seed array... [2.033s] Computing hash join... [5.422s] Masking low complexity seeds... [0.214s] Searching alignments... [184.114s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.337s] Building query seed array... [1.688s] Computing hash join... [4.851s] Masking low complexity seeds... [0.182s] Searching alignments... [186.112s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.722s] Building query seed array... [1.565s] Computing hash join... [4.632s] Masking low complexity seeds... [0.169s] Searching alignments... [284.077s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.248s] Building query seed array... [1.792s] Computing hash join... [4.716s] Masking low complexity seeds... [0.172s] Searching alignments... [213.299s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.018s] Building query seed array... [1.851s] Computing hash join... [5.367s] Masking low complexity seeds... [0.194s] Searching alignments... [156.076s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [1.628s] Computing hash join... [5.071s] Masking low complexity seeds... [0.183s] Searching alignments... [161.67s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [1.253s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.187s] Sorting trace points... [2.188s] Computing alignments... [68.639s] Deallocating buffers... [0.045s] Loading trace points... [0.071s] Sorting trace points... [1.632s] Computing alignments... [69.149s] Deallocating buffers... [0.05s] Loading trace points... [0.067s] Sorting trace points... [1.554s] Computing alignments... [68.467s] Deallocating buffers... [0.045s] Loading trace points... [0.002s] Sorting trace points... [1.827s] Computing alignments... [69.079s] Deallocating buffers... [0.048s] Loading trace points... [0.071s] Sorting trace points... [2.112s] Computing alignments... [67.334s] Deallocating buffers... [0.028s] Loading trace points... [0.068s] Sorting trace points... [1.879s] Computing alignments... [68.035s] Deallocating buffers... [0.032s] Loading trace points... [0.061s] Sorting trace points... [2.14s] Computing alignments... [64.808s] Deallocating buffers... [0.031s] Loading trace points... [0.043s] Sorting trace points... [1.736s] Computing alignments... [69.112s] Deallocating buffers... [0.055s] Loading trace points... [0.06s] Sorting trace points... [2.155s] Computing alignments... [69.572s] Deallocating buffers... [0.055s] Loading trace points... [0.069s] Sorting trace points... [2.271s] Computing alignments... [69.489s] Deallocating buffers... [0.047s] Loading trace points... [0.061s] Sorting trace points... [2.196s] Computing alignments... [68.471s] Deallocating buffers... [0.345s] Loading trace points... [0.078s] Sorting trace points... [2.123s] Computing alignments... [70.558s] Deallocating buffers... [0.062s] Loading trace points... [0.001s] Sorting trace points... [2.055s] Computing alignments... [67.241s] Deallocating buffers... [0.055s] Loading trace points... [0.066s] Sorting trace points... [1.898s] Computing alignments... [66.929s] Deallocating buffers... [0.046s] Loading trace points... [0.055s] Sorting trace points... [2.138s] Computing alignments... [68.473s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [2.057s] Computing alignments... [66.104s] Deallocating buffers... [0.053s] Loading trace points... [0s] [1136.51s] Deallocating reference... [0.082s] Loading reference sequences... [29.506s] Masking reference... [31.048s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.917s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.418s] Building query seed array... [1.755s] Computing hash join... [4.995s] Masking low complexity seeds... [0.183s] Searching alignments... [583.594s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.029s] Building query seed array... [1.957s] Computing hash join... [5.391s] Masking low complexity seeds... [0.187s] Searching alignments... [246.382s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.441s] Building query seed array... [2.055s] Computing hash join... [4.892s] Masking low complexity seeds... [0.19s] Searching alignments... [186.927s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.394s] Building query seed array... [1.677s] Computing hash join... [5.213s] Masking low complexity seeds... [0.182s] Searching alignments... [184.551s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.01s] Building query seed array... [1.554s] Computing hash join... [5.156s] Masking low complexity seeds... [0.181s] Searching alignments... [278.781s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.36s] Building query seed array... [1.781s] Computing hash join... [5.287s] Masking low complexity seeds... [0.179s] Searching alignments... [208.054s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.368s] Building query seed array... [1.9s] Computing hash join... [5.175s] Masking low complexity seeds... [0.18s] Searching alignments... [155.178s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.119s] Building query seed array... [1.636s] Computing hash join... [4.819s] Masking low complexity seeds... [0.175s] Searching alignments... [161.111s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [1.193s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.949s] Sorting trace points... [2.376s] Computing alignments... [72.855s] Deallocating buffers... [0.066s] Loading trace points... [0.081s] Sorting trace points... [2.068s] Computing alignments... [74.585s] Deallocating buffers... [0.044s] Loading trace points... [0.047s] Sorting trace points... [2.255s] Computing alignments... [73.158s] Deallocating buffers... [0.066s] Loading trace points... [0.098s] Sorting trace points... [1.819s] Computing alignments... [74.155s] Deallocating buffers... [0.057s] Loading trace points... [0.316s] Sorting trace points... [2.076s] Computing alignments... [71.829s] Deallocating buffers... [0.066s] Loading trace points... [0.078s] Sorting trace points... [2.265s] Computing alignments... [73.238s] Deallocating buffers... [0.454s] Loading trace points... [0.062s] Sorting trace points... [2.164s] Computing alignments... [69.015s] Deallocating buffers... [0.067s] Loading trace points... [0.052s] Sorting trace points... [1.86s] Computing alignments... [74.064s] Deallocating buffers... [0.063s] Loading trace points... [0.041s] Sorting trace points... [1.666s] Computing alignments... [74.59s] Deallocating buffers... [0.071s] Loading trace points... [0.081s] Sorting trace points... [1.587s] Computing alignments... [73.616s] Deallocating buffers... [0.074s] Loading trace points... [0.05s] Sorting trace points... [2.206s] Computing alignments... [72.104s] Deallocating buffers... [0.065s] Loading trace points... [0.066s] Sorting trace points... [2.009s] Computing alignments... [75.543s] Deallocating buffers... [0.069s] Loading trace points... [0.336s] Sorting trace points... [1.647s] Computing alignments... [70.953s] Deallocating buffers... [0.06s] Loading trace points... [0.053s] Sorting trace points... [1.671s] Computing alignments... [71.221s] Deallocating buffers... [0.064s] Loading trace points... [0.002s] Sorting trace points... [1.929s] Computing alignments... [73.174s] Deallocating buffers... [0.07s] Loading trace points... [0s] Sorting trace points... [1.622s] Computing alignments... [69.662s] Deallocating buffers... [0.081s] Loading trace points... [0s] [1209.85s] Deallocating reference... [0.1s] Loading reference sequences... [29.704s] Masking reference... [31.061s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.853s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.365s] Building query seed array... [1.794s] Computing hash join... [5.891s] Masking low complexity seeds... [0.19s] Searching alignments... [595.498s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.776s] Building query seed array... [2.257s] Computing hash join... [4.966s] Masking low complexity seeds... [0.193s] Searching alignments... [245.189s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.071s] Building query seed array... [2.216s] Computing hash join... [5.679s] Masking low complexity seeds... [0.188s] Searching alignments... [184.165s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.274s] Building query seed array... [1.849s] Computing hash join... [5.015s] Masking low complexity seeds... [0.179s] Searching alignments... [184.924s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.973s] Building query seed array... [1.747s] Computing hash join... [4.769s] Masking low complexity seeds... [0.179s] Searching alignments... [272.788s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.442s] Building query seed array... [1.955s] Computing hash join... [4.783s] Masking low complexity seeds... [0.172s] Searching alignments... [208.113s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.602s] Building query seed array... [2.117s] Computing hash join... [5.209s] Masking low complexity seeds... [0.195s] Searching alignments... [153.54s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.621s] Building query seed array... [1.827s] Computing hash join... [4.91s] Masking low complexity seeds... [0.177s] Searching alignments... [162.297s] Deallocating memory... [0s] Deallocating buffers... [1.256s] Clearing query masking... [1.203s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.084s] Sorting trace points... [2.184s] Computing alignments... [71.851s] Deallocating buffers... [0.038s] Loading trace points... [0.084s] Sorting trace points... [1.798s] Computing alignments... [72.597s] Deallocating buffers... [0.039s] Loading trace points... [0.112s] Sorting trace points... [2.184s] Computing alignments... [70.596s] Deallocating buffers... [0.049s] Loading trace points... [0.078s] Sorting trace points... [1.804s] Computing alignments... [72.801s] Deallocating buffers... [0.052s] Loading trace points... [0.084s] Sorting trace points... [2.128s] Computing alignments... [69.772s] Deallocating buffers... [0.057s] Loading trace points... [0.075s] Sorting trace points... [1.702s] Computing alignments... [70.847s] Deallocating buffers... [0.043s] Loading trace points... [0.06s] Sorting trace points... [1.574s] Computing alignments... [67.81s] Deallocating buffers... [0.039s] Loading trace points... [0.081s] Sorting trace points... [1.779s] Computing alignments... [71.207s] Deallocating buffers... [0.044s] Loading trace points... [0.129s] Sorting trace points... [1.674s] Computing alignments... [72.003s] Deallocating buffers... [0.046s] Loading trace points... [0.001s] Sorting trace points... [2.118s] Computing alignments... [71.221s] Deallocating buffers... [0.109s] Loading trace points... [0.104s] Sorting trace points... [2.224s] Computing alignments... [69.932s] Deallocating buffers... [0.039s] Loading trace points... [0.062s] Sorting trace points... [2.186s] Computing alignments... [73.502s] Deallocating buffers... [0.048s] Loading trace points... [0.092s] Sorting trace points... [1.965s] Computing alignments... [68.749s] Deallocating buffers... [0.048s] Loading trace points... [0.002s] Sorting trace points... [1.839s] Computing alignments... [69.615s] Deallocating buffers... [0.04s] Loading trace points... [0.072s] Sorting trace points... [2.121s] Computing alignments... [70.502s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [2.062s] Computing alignments... [68.061s] Deallocating buffers... [0.156s] Loading trace points... [0s] [1175.59s] Deallocating reference... [0.065s] Loading reference sequences... [30.084s] Masking reference... [31.159s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.882s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.358s] Building query seed array... [1.763s] Computing hash join... [6.118s] Masking low complexity seeds... [0.191s] Searching alignments... [592.037s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.712s] Building query seed array... [2.376s] Computing hash join... [5.007s] Masking low complexity seeds... [0.185s] Searching alignments... [249.079s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.606s] Building query seed array... [2.199s] Computing hash join... [4.89s] Masking low complexity seeds... [0.18s] Searching alignments... [184.561s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.403s] Building query seed array... [1.928s] Computing hash join... [5.566s] Masking low complexity seeds... [0.189s] Searching alignments... [188.886s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.847s] Building query seed array... [1.705s] Computing hash join... [4.83s] Masking low complexity seeds... [0.172s] Searching alignments... [277.193s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.367s] Building query seed array... [1.872s] Computing hash join... [5.31s] Masking low complexity seeds... [0.173s] Searching alignments... [211.824s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.729s] Building query seed array... [2.029s] Computing hash join... [5.002s] Masking low complexity seeds... [0.187s] Searching alignments... [156.36s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.417s] Building query seed array... [1.844s] Computing hash join... [5.492s] Masking low complexity seeds... [0.222s] Searching alignments... [162.459s] Deallocating memory... [0s] Deallocating buffers... [1.662s] Clearing query masking... [1.169s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.491s] Sorting trace points... [2.129s] Computing alignments... [71.481s] Deallocating buffers... [0.046s] Loading trace points... [0.049s] Sorting trace points... [1.698s] Computing alignments... [72.997s] Deallocating buffers... [0.047s] Loading trace points... [0.095s] Sorting trace points... [2.165s] Computing alignments... [70.436s] Deallocating buffers... [0.049s] Loading trace points... [0.081s] Sorting trace points... [2.181s] Computing alignments... [73.128s] Deallocating buffers... [0.038s] Loading trace points... [0.078s] Sorting trace points... [2.08s] Computing alignments... [69.794s] Deallocating buffers... [0.045s] Loading trace points... [0.054s] Sorting trace points... [1.767s] Computing alignments... [71.053s] Deallocating buffers... [0.145s] Loading trace points... [0.068s] Sorting trace points... [1.975s] Computing alignments... [67.854s] Deallocating buffers... [0.038s] Loading trace points... [0.101s] Sorting trace points... [2.193s] Computing alignments... [71.692s] Deallocating buffers... [0.045s] Loading trace points... [0.077s] Sorting trace points... [2.033s] Computing alignments... [72.346s] Deallocating buffers... [0.271s] Loading trace points... [0.002s] Sorting trace points... [2.149s] Computing alignments... [71.826s] Deallocating buffers... [0.053s] Loading trace points... [0.088s] Sorting trace points... [1.803s] Computing alignments... [70.664s] Deallocating buffers... [0.047s] Loading trace points... [0.076s] Sorting trace points... [2.088s] Computing alignments... [74.059s] Deallocating buffers... [0.049s] Loading trace points... [0.077s] Sorting trace points... [2.025s] Computing alignments... [69.36s] Deallocating buffers... [0.031s] Loading trace points... [0.001s] Sorting trace points... [1.604s] Computing alignments... [69.968s] Deallocating buffers... [0.029s] Loading trace points... [0.075s] Sorting trace points... [2.008s] Computing alignments... [71.521s] Deallocating buffers... [0.052s] Loading trace points... [0s] Sorting trace points... [1.502s] Computing alignments... [68.647s] Deallocating buffers... [0.04s] Loading trace points... [0s] [1182.62s] Deallocating reference... [0.066s] Loading reference sequences... [29.248s] Masking reference... [32.177s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.803s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.269s] Building query seed array... [1.721s] Computing hash join... [5.217s] Masking low complexity seeds... [0.182s] Searching alignments... [588.886s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.521s] Building query seed array... [1.969s] Computing hash join... [5.49s] Masking low complexity seeds... [0.188s] Searching alignments... [246.708s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.39s] Building query seed array... [1.995s] Computing hash join... [5.355s] Masking low complexity seeds... [0.186s] Searching alignments... [184.599s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.993s] Building query seed array... [1.695s] Computing hash join... [5.37s] Masking low complexity seeds... [0.195s] Searching alignments... [184.453s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.371s] Building query seed array... [1.52s] Computing hash join... [5.159s] Masking low complexity seeds... [0.179s] Searching alignments... [279.858s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.512s] Building query seed array... [1.777s] Computing hash join... [5.377s] Masking low complexity seeds... [0.185s] Searching alignments... [213.05s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.271s] Building query seed array... [1.928s] Computing hash join... [5.13s] Masking low complexity seeds... [0.183s] Searching alignments... [155.894s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.894s] Building query seed array... [1.575s] Computing hash join... [4.942s] Masking low complexity seeds... [0.172s] Searching alignments... [162.923s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [1.217s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.282s] Sorting trace points... [2.153s] Computing alignments... [67.991s] Deallocating buffers... [0.038s] Loading trace points... [0.001s] Sorting trace points... [1.937s] Computing alignments... [69.422s] Deallocating buffers... [0.04s] Loading trace points... [0.061s] Sorting trace points... [2.236s] Computing alignments... [67.778s] Deallocating buffers... [0.046s] Loading trace points... [0.051s] Sorting trace points... [2.29s] Computing alignments... [68.766s] Deallocating buffers... [0.286s] Loading trace points... [0.061s] Sorting trace points... [1.621s] Computing alignments... [66.892s] Deallocating buffers... [0.053s] Loading trace points... [0.048s] Sorting trace points... [1.592s] Computing alignments... [67.531s] Deallocating buffers... [0.05s] Loading trace points... [0.002s] Sorting trace points... [1.61s] Computing alignments... [64.589s] Deallocating buffers... [0.031s] Loading trace points... [0.081s] Sorting trace points... [2.15s] Computing alignments... [68.823s] Deallocating buffers... [0.047s] Loading trace points... [0.08s] Sorting trace points... [1.568s] Computing alignments... [69.434s] Deallocating buffers... [0.041s] Loading trace points... [0.086s] Sorting trace points... [2.169s] Computing alignments... [68.921s] Deallocating buffers... [0.124s] Loading trace points... [0.052s] Sorting trace points... [2.539s] Computing alignments... [67.964s] Deallocating buffers... [0.315s] Loading trace points... [0.048s] Sorting trace points... [1.858s] Computing alignments... [70.176s] Deallocating buffers... [0.049s] Loading trace points... [0.062s] Sorting trace points... [1.571s] Computing alignments... [66.118s] Deallocating buffers... [0.044s] Loading trace points... [0.073s] Sorting trace points... [2.188s] Computing alignments... [66.75s] Deallocating buffers... [0.044s] Loading trace points... [0.06s] Sorting trace points... [1.821s] Computing alignments... [68.242s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [2.041s] Computing alignments... [65.744s] Deallocating buffers... [0.046s] Loading trace points... [0s] [1129.93s] Deallocating reference... [0.091s] Loading reference sequences... [31.111s] Masking reference... [30.877s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.62s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.073s] Building query seed array... [1.765s] Computing hash join... [5.36s] Masking low complexity seeds... [0.193s] Searching alignments... [597.482s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.412s] Building query seed array... [2.198s] Computing hash join... [5.492s] Masking low complexity seeds... [0.195s] Searching alignments... [252.121s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.6s] Building query seed array... [2.248s] Computing hash join... [4.981s] Masking low complexity seeds... [0.19s] Searching alignments... [183.88s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [1.849s] Computing hash join... [5.031s] Masking low complexity seeds... [0.192s] Searching alignments... [185.889s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.998s] Building query seed array... [1.666s] Computing hash join... [5.33s] Masking low complexity seeds... [0.194s] Searching alignments... [280.975s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.97s] Building query seed array... [1.918s] Computing hash join... [5.182s] Masking low complexity seeds... [0.181s] Searching alignments... [214.203s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.283s] Building query seed array... [2.032s] Computing hash join... [4.716s] Masking low complexity seeds... [0.171s] Searching alignments... [157.239s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.954s] Building query seed array... [1.738s] Computing hash join... [4.932s] Masking low complexity seeds... [0.174s] Searching alignments... [163.842s] Deallocating memory... [0s] Deallocating buffers... [0.548s] Clearing query masking... [1.209s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.112s] Sorting trace points... [2.234s] Computing alignments... [69.498s] Deallocating buffers... [0.059s] Loading trace points... [0.051s] Sorting trace points... [2.359s] Computing alignments... [69.786s] Deallocating buffers... [0.205s] Loading trace points... [0.082s] Sorting trace points... [2.186s] Computing alignments... [68.901s] Deallocating buffers... [0.081s] Loading trace points... [0.085s] Sorting trace points... [2.171s] Computing alignments... [69.753s] Deallocating buffers... [0.35s] Loading trace points... [0.087s] Sorting trace points... [1.733s] Computing alignments... [67.793s] Deallocating buffers... [0.065s] Loading trace points... [0.066s] Sorting trace points... [2.382s] Computing alignments... [68.545s] Deallocating buffers... [0.347s] Loading trace points... [0.052s] Sorting trace points... [1.89s] Computing alignments... [65.116s] Deallocating buffers... [0.066s] Loading trace points... [0.066s] Sorting trace points... [1.788s] Computing alignments... [69.884s] Deallocating buffers... [0.065s] Loading trace points... [0.002s] Sorting trace points... [2.129s] Computing alignments... [70.209s] Deallocating buffers... [0.066s] Loading trace points... [0.061s] Sorting trace points... [2.002s] Computing alignments... [70.187s] Deallocating buffers... [0.063s] Loading trace points... [0.069s] Sorting trace points... [1.633s] Computing alignments... [68.199s] Deallocating buffers... [0.073s] Loading trace points... [0.052s] Sorting trace points... [1.671s] Computing alignments... [71.881s] Deallocating buffers... [0.063s] Loading trace points... [0.08s] Sorting trace points... [1.792s] Computing alignments... [68.031s] Deallocating buffers... [0.073s] Loading trace points... [0.066s] Sorting trace points... [2.14s] Computing alignments... [66.886s] Deallocating buffers... [0.067s] Loading trace points... [0.073s] Sorting trace points... [2.167s] Computing alignments... [69.021s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [2.106s] Computing alignments... [65.214s] Deallocating buffers... [0.057s] Loading trace points... [0s] [1145.15s] Deallocating reference... [0.094s] Loading reference sequences... [29.031s] Masking reference... [30.87s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.664s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.496s] Building query seed array... [1.814s] Computing hash join... [5.356s] Masking low complexity seeds... [0.194s] Searching alignments... [594.344s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.463s] Building query seed array... [2.102s] Computing hash join... [5.19s] Masking low complexity seeds... [0.195s] Searching alignments... [245.365s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.136s] Building query seed array... [2.045s] Computing hash join... [4.947s] Masking low complexity seeds... [0.19s] Searching alignments... [183.233s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.977s] Building query seed array... [1.804s] Computing hash join... [5.129s] Masking low complexity seeds... [0.19s] Searching alignments... [188.126s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.33s] Building query seed array... [1.6s] Computing hash join... [5.142s] Masking low complexity seeds... [0.178s] Searching alignments... [280.862s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.532s] Building query seed array... [1.825s] Computing hash join... [5.148s] Masking low complexity seeds... [0.178s] Searching alignments... [214.671s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.61s] Building query seed array... [1.977s] Computing hash join... [4.776s] Masking low complexity seeds... [0.176s] Searching alignments... [154.996s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.009s] Building query seed array... [1.686s] Computing hash join... [5.032s] Masking low complexity seeds... [0.174s] Searching alignments... [160.8s] Deallocating memory... [0s] Deallocating buffers... [0.261s] Clearing query masking... [1.224s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.238s] Sorting trace points... [2.237s] Computing alignments... [62.348s] Deallocating buffers... [0.037s] Loading trace points... [0.056s] Sorting trace points... [2.145s] Computing alignments... [62.785s] Deallocating buffers... [0.039s] Loading trace points... [0.075s] Sorting trace points... [1.939s] Computing alignments... [62.934s] Deallocating buffers... [0.045s] Loading trace points... [0.076s] Sorting trace points... [2.34s] Computing alignments... [63.779s] Deallocating buffers... [0.243s] Loading trace points... [0.088s] Sorting trace points... [2.143s] Computing alignments... [60.947s] Deallocating buffers... [0.065s] Loading trace points... [0.077s] Sorting trace points... [1.503s] Computing alignments... [61.521s] Deallocating buffers... [0.044s] Loading trace points... [0.091s] Sorting trace points... [2.143s] Computing alignments... [59.223s] Deallocating buffers... [0.137s] Loading trace points... [0.088s] Sorting trace points... [2.17s] Computing alignments... [62.757s] Deallocating buffers... [0.039s] Loading trace points... [0.086s] Sorting trace points... [2.158s] Computing alignments... [62.713s] Deallocating buffers... [0.042s] Loading trace points... [0.07s] Sorting trace points... [2.572s] Computing alignments... [62.871s] Deallocating buffers... [0.422s] Loading trace points... [0.075s] Sorting trace points... [2.071s] Computing alignments... [61.659s] Deallocating buffers... [0.045s] Loading trace points... [0.06s] Sorting trace points... [2.315s] Computing alignments... [63.789s] Deallocating buffers... [0.25s] Loading trace points... [0.064s] Sorting trace points... [2.149s] Computing alignments... [60.351s] Deallocating buffers... [0.032s] Loading trace points... [0.065s] Sorting trace points... [2.055s] Computing alignments... [61.471s] Deallocating buffers... [0.044s] Loading trace points... [0.105s] Sorting trace points... [2.165s] Computing alignments... [61.621s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [2.006s] Computing alignments... [59.743s] Deallocating buffers... [0.056s] Loading trace points... [0s] [1038.66s] Deallocating reference... [0.061s] Loading reference sequences... [29.515s] Masking reference... [30.899s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.013s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.391s] Building query seed array... [1.754s] Computing hash join... [5.275s] Masking low complexity seeds... [0.186s] Searching alignments... [592.653s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.335s] Building query seed array... [2.446s] Computing hash join... [5.122s] Masking low complexity seeds... [0.188s] Searching alignments... [248.589s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.165s] Building query seed array... [2.146s] Computing hash join... [5.321s] Masking low complexity seeds... [0.189s] Searching alignments... [188.091s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.585s] Building query seed array... [1.945s] Computing hash join... [4.749s] Masking low complexity seeds... [0.175s] Searching alignments... [185.82s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.791s] Building query seed array... [1.649s] Computing hash join... [5.21s] Masking low complexity seeds... [0.184s] Searching alignments... [282.311s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.336s] Building query seed array... [1.886s] Computing hash join... [4.943s] Masking low complexity seeds... [0.176s] Searching alignments... [220.194s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.458s] Building query seed array... [2.14s] Computing hash join... [5.144s] Masking low complexity seeds... [0.177s] Searching alignments... [155.522s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.597s] Building query seed array... [1.764s] Computing hash join... [5.199s] Masking low complexity seeds... [0.185s] Searching alignments... [163.778s] Deallocating memory... [0s] Deallocating buffers... [0.559s] Clearing query masking... [1.163s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.419s] Sorting trace points... [2.281s] Computing alignments... [75.618s] Deallocating buffers... [0.053s] Loading trace points... [0.054s] Sorting trace points... [1.743s] Computing alignments... [76.089s] Deallocating buffers... [0.056s] Loading trace points... [0.045s] Sorting trace points... [2.223s] Computing alignments... [74.219s] Deallocating buffers... [0.062s] Loading trace points... [0.093s] Sorting trace points... [2.117s] Computing alignments... [75.761s] Deallocating buffers... [0.228s] Loading trace points... [0.047s] Sorting trace points... [1.713s] Computing alignments... [74.048s] Deallocating buffers... [0.067s] Loading trace points... [0.06s] Sorting trace points... [1.594s] Computing alignments... [75.167s] Deallocating buffers... [0.048s] Loading trace points... [0.073s] Sorting trace points... [1.732s] Computing alignments... [70.939s] Deallocating buffers... [0.075s] Loading trace points... [0.069s] Sorting trace points... [1.652s] Computing alignments... [75.815s] Deallocating buffers... [0.057s] Loading trace points... [0.054s] Sorting trace points... [1.997s] Computing alignments... [76.645s] Deallocating buffers... [0.064s] Loading trace points... [0.078s] Sorting trace points... [2.128s] Computing alignments... [74.89s] Deallocating buffers... [0.059s] Loading trace points... [0.069s] Sorting trace points... [1.913s] Computing alignments... [74s] Deallocating buffers... [0.055s] Loading trace points... [0.087s] Sorting trace points... [2.307s] Computing alignments... [77.659s] Deallocating buffers... [0.319s] Loading trace points... [0.064s] Sorting trace points... [1.6s] Computing alignments... [72.763s] Deallocating buffers... [0.061s] Loading trace points... [0.067s] Sorting trace points... [1.602s] Computing alignments... [73.175s] Deallocating buffers... [0.055s] Loading trace points... [0.001s] Sorting trace points... [2.209s] Computing alignments... [73.721s] Deallocating buffers... [0.17s] Loading trace points... [0s] Sorting trace points... [1.695s] Computing alignments... [71.121s] Deallocating buffers... [0.144s] Loading trace points... [0s] [1236.12s] Deallocating reference... [0.061s] Loading reference sequences... [255.064s] Masking reference... [31.177s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.682s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.45s] Building query seed array... [1.738s] Computing hash join... [5.124s] Masking low complexity seeds... [0.187s] Searching alignments... [598.843s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.383s] Building query seed array... [1.999s] Computing hash join... [5.022s] Masking low complexity seeds... [0.187s] Searching alignments... [247.144s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.542s] Building query seed array... [2.011s] Computing hash join... [5.301s] Masking low complexity seeds... [0.188s] Searching alignments... [180.885s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.034s] Building query seed array... [1.706s] Computing hash join... [5.16s] Masking low complexity seeds... [0.181s] Searching alignments... [186.856s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.242s] Building query seed array... [1.549s] Computing hash join... [5.117s] Masking low complexity seeds... [0.179s] Searching alignments... [280.688s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.387s] Building query seed array... [1.763s] Computing hash join... [4.965s] Masking low complexity seeds... [0.172s] Searching alignments... [211.26s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.682s] Building query seed array... [1.948s] Computing hash join... [5.187s] Masking low complexity seeds... [0.192s] Searching alignments... [155.649s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.24s] Building query seed array... [1.609s] Computing hash join... [5.321s] Masking low complexity seeds... [0.182s] Searching alignments... [163.212s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [1.219s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.47s] Sorting trace points... [1.69s] Computing alignments... [72.537s] Deallocating buffers... [0.063s] Loading trace points... [0.063s] Sorting trace points... [1.648s] Computing alignments... [74.019s] Deallocating buffers... [0.057s] Loading trace points... [0.078s] Sorting trace points... [1.983s] Computing alignments... [72.697s] Deallocating buffers... [0.053s] Loading trace points... [0.041s] Sorting trace points... [2.232s] Computing alignments... [73.458s] Deallocating buffers... [0.047s] Loading trace points... [0.06s] Sorting trace points... [1.531s] Computing alignments... [70.822s] Deallocating buffers... [0.043s] Loading trace points... [0.001s] Sorting trace points... [1.795s] Computing alignments... [71.682s] Deallocating buffers... [0.042s] Loading trace points... [0.079s] Sorting trace points... [1.785s] Computing alignments... [68.723s] Deallocating buffers... [0.054s] Loading trace points... [0.059s] Sorting trace points... [2.022s] Computing alignments... [73.106s] Deallocating buffers... [0.058s] Loading trace points... [0.063s] Sorting trace points... [2.183s] Computing alignments... [73.537s] Deallocating buffers... [0.053s] Loading trace points... [0.915s] Sorting trace points... [1.942s] Computing alignments... [72.813s] Deallocating buffers... [0.064s] Loading trace points... [0.069s] Sorting trace points... [2.282s] Computing alignments... [71.892s] Deallocating buffers... [0.145s] Loading trace points... [0.082s] Sorting trace points... [2.394s] Computing alignments... [74.752s] Deallocating buffers... [0.119s] Loading trace points... [0.036s] Sorting trace points... [2.072s] Computing alignments... [70.838s] Deallocating buffers... [0.042s] Loading trace points... [0.253s] Sorting trace points... [1.834s] Computing alignments... [70.637s] Deallocating buffers... [0.061s] Loading trace points... [0.083s] Sorting trace points... [2.142s] Computing alignments... [72.481s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [2.101s] Computing alignments... [68.792s] Deallocating buffers... [0.045s] Loading trace points... [0s] [1198.88s] Deallocating reference... [0.065s] Loading reference sequences... [29.275s] Masking reference... [30.903s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [32.553s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.212s] Building query seed array... [1.763s] Computing hash join... [5s] Masking low complexity seeds... [0.185s] Searching alignments... [595.617s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.231s] Building query seed array... [2.02s] Computing hash join... [5.303s] Masking low complexity seeds... [0.196s] Searching alignments... [248.792s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.326s] Building query seed array... [2.039s] Computing hash join... [5.453s] Masking low complexity seeds... [0.196s] Searching alignments... [182.626s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.148s] Building query seed array... [1.718s] Computing hash join... [5.461s] Masking low complexity seeds... [0.195s] Searching alignments... [184.354s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.017s] Building query seed array... [1.57s] Computing hash join... [5.033s] Masking low complexity seeds... [0.179s] Searching alignments... [282.793s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.315s] Building query seed array... [1.786s] Computing hash join... [5.248s] Masking low complexity seeds... [0.176s] Searching alignments... [214.169s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.244s] Building query seed array... [1.886s] Computing hash join... [5.117s] Masking low complexity seeds... [0.179s] Searching alignments... [157.347s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.731s] Building query seed array... [1.539s] Computing hash join... [5.256s] Masking low complexity seeds... [0.18s] Searching alignments... [162.338s] Deallocating memory... [0s] Deallocating buffers... [0.154s] Clearing query masking... [1.348s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.405s] Sorting trace points... [1.699s] Computing alignments... [68.264s] Deallocating buffers... [0.04s] Loading trace points... [0.08s] Sorting trace points... [2.174s] Computing alignments... [68.617s] Deallocating buffers... [0.043s] Loading trace points... [0.076s] Sorting trace points... [2.348s] Computing alignments... [67.662s] Deallocating buffers... [0.315s] Loading trace points... [0.068s] Sorting trace points... [2.274s] Computing alignments... [69.14s] Deallocating buffers... [0.047s] Loading trace points... [0.062s] Sorting trace points... [1.773s] Computing alignments... [66.798s] Deallocating buffers... [0.048s] Loading trace points... [0.058s] Sorting trace points... [2.034s] Computing alignments... [67.159s] Deallocating buffers... [0.037s] Loading trace points... [0.065s] Sorting trace points... [2.106s] Computing alignments... [64.521s] Deallocating buffers... [0.044s] Loading trace points... [0.09s] Sorting trace points... [2.46s] Computing alignments... [68.75s] Deallocating buffers... [0.438s] Loading trace points... [0.407s] Sorting trace points... [1.672s] Computing alignments... [69.24s] Deallocating buffers... [0.046s] Loading trace points... [0.054s] Sorting trace points... [2.226s] Computing alignments... [68.599s] Deallocating buffers... [0.032s] Loading trace points... [0.078s] Sorting trace points... [2.159s] Computing alignments... [67.379s] Deallocating buffers... [0.053s] Loading trace points... [0.074s] Sorting trace points... [2.218s] Computing alignments... [69.753s] Deallocating buffers... [0.048s] Loading trace points... [0.069s] Sorting trace points... [2.078s] Computing alignments... [66.599s] Deallocating buffers... [0.038s] Loading trace points... [0.062s] Sorting trace points... [2.146s] Computing alignments... [66.463s] Deallocating buffers... [0.032s] Loading trace points... [0.065s] Sorting trace points... [2.11s] Computing alignments... [67.33s] Deallocating buffers... [0.032s] Loading trace points... [0s] Sorting trace points... [2.045s] Computing alignments... [65.384s] Deallocating buffers... [0.039s] Loading trace points... [0s] [1129.36s] Deallocating reference... [0.085s] Loading reference sequences... [23.576s] Masking reference... [25.014s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [27.306s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.459s] Building query seed array... [1.776s] Computing hash join... [4.065s] Masking low complexity seeds... [0.174s] Searching alignments... [475.335s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.07s] Building query seed array... [1.915s] Computing hash join... [4.518s] Masking low complexity seeds... [0.191s] Searching alignments... [196.351s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.002s] Building query seed array... [2.037s] Computing hash join... [3.955s] Masking low complexity seeds... [0.169s] Searching alignments... [148.375s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.367s] Building query seed array... [1.662s] Computing hash join... [3.912s] Masking low complexity seeds... [0.163s] Searching alignments... [151.643s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.226s] Building query seed array... [1.591s] Computing hash join... [3.861s] Masking low complexity seeds... [0.16s] Searching alignments... [219.358s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.045s] Building query seed array... [1.769s] Computing hash join... [4.034s] Masking low complexity seeds... [0.168s] Searching alignments... [168.839s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.707s] Building query seed array... [1.84s] Computing hash join... [3.81s] Masking low complexity seeds... [0.168s] Searching alignments... [125.161s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.311s] Building query seed array... [1.562s] Computing hash join... [4.218s] Masking low complexity seeds... [0.174s] Searching alignments... [131.499s] Deallocating memory... [0s] Deallocating buffers... [0.12s] Clearing query masking... [1.197s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.213s] Sorting trace points... [1.852s] Computing alignments... [53.263s] Deallocating buffers... [0.034s] Loading trace points... [0.082s] Sorting trace points... [1.327s] Computing alignments... [53.965s] Deallocating buffers... [0.034s] Loading trace points... [0.082s] Sorting trace points... [1.727s] Computing alignments... [53.181s] Deallocating buffers... [0.031s] Loading trace points... [0.049s] Sorting trace points... [1.526s] Computing alignments... [53.58s] Deallocating buffers... [0.033s] Loading trace points... [0.092s] Sorting trace points... [1.256s] Computing alignments... [51.939s] Deallocating buffers... [0.033s] Loading trace points... [0.045s] Sorting trace points... [1.465s] Computing alignments... [52.536s] Deallocating buffers... [0.032s] Loading trace points... [0.059s] Sorting trace points... [1.72s] Computing alignments... [50.513s] Deallocating buffers... [0.031s] Loading trace points... [0.05s] Sorting trace points... [1.758s] Computing alignments... [53.387s] Deallocating buffers... [0.032s] Loading trace points... [0.768s] Sorting trace points... [1.322s] Computing alignments... [53.62s] Deallocating buffers... [0.033s] Loading trace points... [0.059s] Sorting trace points... [1.685s] Computing alignments... [53.419s] Deallocating buffers... [0.031s] Loading trace points... [0.068s] Sorting trace points... [1.748s] Computing alignments... [52.578s] Deallocating buffers... [0.021s] Loading trace points... [0.071s] Sorting trace points... [1.782s] Computing alignments... [54.344s] Deallocating buffers... [0.037s] Loading trace points... [0.051s] Sorting trace points... [1.742s] Computing alignments... [51.386s] Deallocating buffers... [0.036s] Loading trace points... [0.079s] Sorting trace points... [1.278s] Computing alignments... [51.358s] Deallocating buffers... [0.033s] Loading trace points... [0.074s] Sorting trace points... [1.536s] Computing alignments... [52.269s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.674s] Computing alignments... [50.745s] Deallocating buffers... [0.021s] Loading trace points... [0s] [878.945s] Deallocating reference... [0.056s] Loading reference sequences... [0.071s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [4226.63s] [4226.63s] Deallocating queries... [0.054s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.88s] [3.641s] Closing the database... [0.009s] Cleaning up... [0s] Total time = 51783.7s Reported 4585888533 pairwise alignments, 4585888533 HSPs. 4203725 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-06.trimmed.R2.fastq.gz complete: CH05-06.trimmed.R2.blastx.meganized.daa Now MEGANizing CH05-06.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-06.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (333.3s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6,942.3s) Total reads: 4,203,725 With hits: 4,203,725 Alignments: 3,144,790,092 Assig. Taxonomy: 2,159,568 Assig. SEED: 96,206 Assig. EGGNOG: 22,823 Assig. GTDB: 188,468 Assig. EC: 383,292 Assig. INTERPRO2GO: 1,018,197 MinSupport set to: 2101 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,208 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.1s) Min-supp. changes: 3,802 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5.5s) Binning reads Syncing 100% (0.2s) Class. Taxonomy: 170 Class. SEED: 478 Class. EGGNOG: 1,637 Class. GTDB: 54 Class. EC: 2,339 Class. INTERPRO2GO: 8,436 Total time: 7,299s Peak memory: 31.1 of 195.3G MEGANization of CH05-06.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-07.trimmed.R1.fastq.gz... 5dd6cb8d07eca05c2b048db172318cc1 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-07.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-07.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.323s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.738s] Opening the output file... [0s] Loading query sequences... [128.09s] Masking queries... [37.213s] Algorithm: Double-indexed Building query histograms... [26.347s] Loading reference sequences... [31.478s] Masking reference... [31.118s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.008s] Building reference histograms... [32.801s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.296s] Building query seed array... [2.978s] Computing hash join... [6.941s] Masking low complexity seeds... [0.549s] Searching alignments... [175.885s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.749s] Building query seed array... [3.805s] Computing hash join... [6.475s] Masking low complexity seeds... [0.329s] Searching alignments... [77.395s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.745s] Building query seed array... [3.688s] Computing hash join... [6.111s] Masking low complexity seeds... [0.312s] Searching alignments... [62.664s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.04s] Building query seed array... [3.26s] Computing hash join... [6.001s] Masking low complexity seeds... [0.338s] Searching alignments... [60.895s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.053s] Building query seed array... [2.948s] Computing hash join... [5.868s] Masking low complexity seeds... [0.322s] Searching alignments... [82.13s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.821s] Building query seed array... [3.091s] Computing hash join... [5.79s] Masking low complexity seeds... [0.314s] Searching alignments... [69.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.224s] Building query seed array... [3.503s] Computing hash join... [5.517s] Masking low complexity seeds... [0.292s] Searching alignments... [56.178s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.901s] Building query seed array... [3.051s] Computing hash join... [5.165s] Masking low complexity seeds... [0.279s] Searching alignments... [56.255s] Deallocating memory... [0s] Deallocating buffers... [1.845s] Clearing query masking... [2.279s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.966s] Sorting trace points... [1.735s] Computing alignments... [53.142s] Deallocating buffers... [0.028s] Loading trace points... [0.153s] Sorting trace points... [0.973s] Computing alignments... [27.442s] Deallocating buffers... [0.015s] Loading trace points... [0.158s] Sorting trace points... [2.094s] Computing alignments... [55.009s] Deallocating buffers... [0.024s] Loading trace points... [0.134s] Sorting trace points... [2.096s] Computing alignments... [54.485s] Deallocating buffers... [0.041s] Loading trace points... [0.162s] Sorting trace points... [1.687s] Computing alignments... [54.187s] Deallocating buffers... [0.027s] Loading trace points... [0.063s] Sorting trace points... [1.973s] Computing alignments... [54.655s] Deallocating buffers... [0.024s] Loading trace points... [0.095s] Sorting trace points... [1.084s] Computing alignments... [28.827s] Deallocating buffers... [0.013s] Loading trace points... [0.135s] Sorting trace points... [1.964s] Computing alignments... [54.109s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.637s] Computing alignments... [54.31s] Deallocating buffers... [0.037s] Loading trace points... [0s] [464.738s] Deallocating reference... [0.062s] Loading reference sequences... [36.583s] Masking reference... [32.21s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.236s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.272s] Building query seed array... [3.041s] Computing hash join... [6.072s] Masking low complexity seeds... [0.287s] Searching alignments... [173.251s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.68s] Building query seed array... [3.853s] Computing hash join... [6.337s] Masking low complexity seeds... [0.288s] Searching alignments... [74.377s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.092s] Building query seed array... [3.913s] Computing hash join... [5.931s] Masking low complexity seeds... [0.322s] Searching alignments... [61.741s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.427s] Building query seed array... [3.013s] Computing hash join... [6.149s] Masking low complexity seeds... [0.309s] Searching alignments... [62.292s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.072s] Building query seed array... [3s] Computing hash join... [5.82s] Masking low complexity seeds... [0.294s] Searching alignments... [76.459s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.755s] Building query seed array... [3.342s] Computing hash join... [5.593s] Masking low complexity seeds... [0.278s] Searching alignments... [67.852s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.24s] Building query seed array... [3.502s] Computing hash join... [5.432s] Masking low complexity seeds... [0.286s] Searching alignments... [55.708s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.602s] Building query seed array... [2.93s] Computing hash join... [5.456s] Masking low complexity seeds... [0.273s] Searching alignments... [54.611s] Deallocating memory... [0s] Deallocating buffers... [1.396s] Clearing query masking... [1.98s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.599s] Sorting trace points... [1.913s] Computing alignments... [56.938s] Deallocating buffers... [0.049s] Loading trace points... [0.066s] Sorting trace points... [1.516s] Computing alignments... [58.486s] Deallocating buffers... [0.053s] Loading trace points... [0.113s] Sorting trace points... [1.695s] Computing alignments... [57.179s] Deallocating buffers... [0.051s] Loading trace points... [0.077s] Sorting trace points... [1.632s] Computing alignments... [57.68s] Deallocating buffers... [0.055s] Loading trace points... [0.074s] Sorting trace points... [2.066s] Computing alignments... [56.735s] Deallocating buffers... [0.032s] Loading trace points... [0.135s] Sorting trace points... [0.844s] Computing alignments... [29.522s] Deallocating buffers... [0.031s] Loading trace points... [0.138s] Sorting trace points... [2.137s] Computing alignments... [58.027s] Deallocating buffers... [0.048s] Loading trace points... [0.056s] Sorting trace points... [1.577s] Computing alignments... [57.194s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1s] Computing alignments... [27.759s] Deallocating buffers... [0.029s] Loading trace points... [0s] [486.726s] Deallocating reference... [0.085s] Loading reference sequences... [29.544s] Masking reference... [30.925s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.925s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.208s] Building query seed array... [2.994s] Computing hash join... [6.566s] Masking low complexity seeds... [0.303s] Searching alignments... [173.931s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.092s] Building query seed array... [3.679s] Computing hash join... [5.787s] Masking low complexity seeds... [0.345s] Searching alignments... [73.154s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.204s] Building query seed array... [3.657s] Computing hash join... [5.535s] Masking low complexity seeds... [0.302s] Searching alignments... [63.624s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.759s] Building query seed array... [3.075s] Computing hash join... [6.299s] Masking low complexity seeds... [0.316s] Searching alignments... [61.267s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.658s] Building query seed array... [2.749s] Computing hash join... [5.521s] Masking low complexity seeds... [0.311s] Searching alignments... [77.206s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.556s] Building query seed array... [3.284s] Computing hash join... [5.268s] Masking low complexity seeds... [0.273s] Searching alignments... [68.672s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.366s] Building query seed array... [3.311s] Computing hash join... [5.839s] Masking low complexity seeds... [0.284s] Searching alignments... [55.267s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.842s] Building query seed array... [2.91s] Computing hash join... [5.183s] Masking low complexity seeds... [0.293s] Searching alignments... [54.262s] Deallocating memory... [0s] Deallocating buffers... [1.622s] Clearing query masking... [2.032s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.423s] Sorting trace points... [2.067s] Computing alignments... [55.996s] Deallocating buffers... [0.039s] Loading trace points... [0.141s] Sorting trace points... [2.277s] Computing alignments... [57.898s] Deallocating buffers... [0.33s] Loading trace points... [0.069s] Sorting trace points... [1.753s] Computing alignments... [56.618s] Deallocating buffers... [0.028s] Loading trace points... [0.12s] Sorting trace points... [2.042s] Computing alignments... [56.863s] Deallocating buffers... [0.046s] Loading trace points... [0.063s] Sorting trace points... [1.962s] Computing alignments... [56.775s] Deallocating buffers... [0.247s] Loading trace points... [0.119s] Sorting trace points... [1.088s] Computing alignments... [29.214s] Deallocating buffers... [0.03s] Loading trace points... [0.15s] Sorting trace points... [1.669s] Computing alignments... [57.548s] Deallocating buffers... [0.04s] Loading trace points... [0.052s] Sorting trace points... [1.871s] Computing alignments... [56.515s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [0.964s] Computing alignments... [27.448s] Deallocating buffers... [0.013s] Loading trace points... [0s] [482.726s] Deallocating reference... [0.062s] Loading reference sequences... [29.319s] Masking reference... [30.934s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.009s] Building reference histograms... [33.45s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.436s] Building query seed array... [3.015s] Computing hash join... [6.369s] Masking low complexity seeds... [0.302s] Searching alignments... [173.839s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.211s] Building query seed array... [3.879s] Computing hash join... [5.491s] Masking low complexity seeds... [0.304s] Searching alignments... [73.763s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.42s] Building query seed array... [3.631s] Computing hash join... [6.082s] Masking low complexity seeds... [0.294s] Searching alignments... [62.393s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.786s] Building query seed array... [3.144s] Computing hash join... [6.342s] Masking low complexity seeds... [0.31s] Searching alignments... [61.568s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.197s] Building query seed array... [2.835s] Computing hash join... [5.905s] Masking low complexity seeds... [0.301s] Searching alignments... [77.289s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.196s] Building query seed array... [3.231s] Computing hash join... [6.056s] Masking low complexity seeds... [0.287s] Searching alignments... [68.69s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.848s] Building query seed array... [3.512s] Computing hash join... [5.952s] Masking low complexity seeds... [0.339s] Searching alignments... [56.269s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.536s] Building query seed array... [2.828s] Computing hash join... [5.414s] Masking low complexity seeds... [0.281s] Searching alignments... [55.732s] Deallocating memory... [0s] Deallocating buffers... [1.391s] Clearing query masking... [2.049s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [12.077s] Sorting trace points... [1.727s] Computing alignments... [57.887s] Deallocating buffers... [0.046s] Loading trace points... [0.132s] Sorting trace points... [1.909s] Computing alignments... [59.338s] Deallocating buffers... [0.044s] Loading trace points... [0.115s] Sorting trace points... [1.553s] Computing alignments... [58.536s] Deallocating buffers... [0.041s] Loading trace points... [1.065s] Sorting trace points... [2.067s] Computing alignments... [58.969s] Deallocating buffers... [0.036s] Loading trace points... [0.803s] Sorting trace points... [2.335s] Computing alignments... [57.941s] Deallocating buffers... [0.134s] Loading trace points... [0.118s] Sorting trace points... [1.052s] Computing alignments... [30.336s] Deallocating buffers... [0.028s] Loading trace points... [0.119s] Sorting trace points... [1.639s] Computing alignments... [59.409s] Deallocating buffers... [0.046s] Loading trace points... [0.078s] Sorting trace points... [1.72s] Computing alignments... [58.931s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [0.818s] Computing alignments... [28.274s] Deallocating buffers... [0.02s] Loading trace points... [0s] [499.627s] Deallocating reference... [0.081s] Loading reference sequences... [29.205s] Masking reference... [32.001s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.304s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.472s] Building query seed array... [3.152s] Computing hash join... [6.584s] Masking low complexity seeds... [0.31s] Searching alignments... [170.995s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.502s] Building query seed array... [3.881s] Computing hash join... [6.171s] Masking low complexity seeds... [0.307s] Searching alignments... [74.695s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.915s] Building query seed array... [3.811s] Computing hash join... [6.338s] Masking low complexity seeds... [0.306s] Searching alignments... [62.468s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.883s] Building query seed array... [3.258s] Computing hash join... [5.681s] Masking low complexity seeds... [0.288s] Searching alignments... [60.368s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.369s] Building query seed array... [2.962s] Computing hash join... [5.245s] Masking low complexity seeds... [0.283s] Searching alignments... [77.649s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.423s] Building query seed array... [3.259s] Computing hash join... [5.477s] Masking low complexity seeds... [0.275s] Searching alignments... [68.909s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.285s] Building query seed array... [3.557s] Computing hash join... [5.498s] Masking low complexity seeds... [0.287s] Searching alignments... [55.897s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.478s] Building query seed array... [2.998s] Computing hash join... [5.118s] Masking low complexity seeds... [0.31s] Searching alignments... [55.054s] Deallocating memory... [0.003s] Deallocating buffers... [1.944s] Clearing query masking... [2.045s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.706s] Sorting trace points... [1.72s] Computing alignments... [60.353s] Deallocating buffers... [0.073s] Loading trace points... [0.114s] Sorting trace points... [1.872s] Computing alignments... [62.061s] Deallocating buffers... [0.142s] Loading trace points... [0.134s] Sorting trace points... [1.824s] Computing alignments... [60.899s] Deallocating buffers... [0.072s] Loading trace points... [0.072s] Sorting trace points... [2.096s] Computing alignments... [60.867s] Deallocating buffers... [0.268s] Loading trace points... [0.075s] Sorting trace points... [1.957s] Computing alignments... [60.489s] Deallocating buffers... [0.047s] Loading trace points... [0.116s] Sorting trace points... [0.769s] Computing alignments... [31.597s] Deallocating buffers... [0.041s] Loading trace points... [0.168s] Sorting trace points... [1.739s] Computing alignments... [61.855s] Deallocating buffers... [0.067s] Loading trace points... [0.085s] Sorting trace points... [1.76s] Computing alignments... [60.861s] Deallocating buffers... [0.07s] Loading trace points... [0s] Sorting trace points... [1.039s] Computing alignments... [29.447s] Deallocating buffers... [0.046s] Loading trace points... [0s] [516.741s] Deallocating reference... [0.074s] Loading reference sequences... [30.068s] Masking reference... [30.917s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.679s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.428s] Building query seed array... [3.029s] Computing hash join... [6.001s] Masking low complexity seeds... [0.31s] Searching alignments... [174.93s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.76s] Building query seed array... [3.882s] Computing hash join... [6.171s] Masking low complexity seeds... [0.302s] Searching alignments... [76.326s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.578s] Building query seed array... [3.746s] Computing hash join... [5.659s] Masking low complexity seeds... [0.313s] Searching alignments... [60.711s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.581s] Building query seed array... [3.271s] Computing hash join... [5.493s] Masking low complexity seeds... [0.308s] Searching alignments... [61.52s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.337s] Building query seed array... [2.862s] Computing hash join... [5.443s] Masking low complexity seeds... [0.295s] Searching alignments... [76.218s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.418s] Building query seed array... [3.294s] Computing hash join... [5.531s] Masking low complexity seeds... [0.287s] Searching alignments... [71.106s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.511s] Building query seed array... [3.395s] Computing hash join... [5.995s] Masking low complexity seeds... [0.282s] Searching alignments... [56.845s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.932s] Building query seed array... [3.036s] Computing hash join... [5.787s] Masking low complexity seeds... [0.287s] Searching alignments... [55.187s] Deallocating memory... [0s] Deallocating buffers... [1.373s] Clearing query masking... [1.945s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.427s] Sorting trace points... [2.071s] Computing alignments... [52.659s] Deallocating buffers... [0.023s] Loading trace points... [0.161s] Sorting trace points... [1.807s] Computing alignments... [54.851s] Deallocating buffers... [0.028s] Loading trace points... [0.131s] Sorting trace points... [1.732s] Computing alignments... [53.325s] Deallocating buffers... [0.036s] Loading trace points... [0.164s] Sorting trace points... [1.982s] Computing alignments... [54.117s] Deallocating buffers... [0.023s] Loading trace points... [0.063s] Sorting trace points... [1.718s] Computing alignments... [52.769s] Deallocating buffers... [0.03s] Loading trace points... [0.086s] Sorting trace points... [1.028s] Computing alignments... [27.908s] Deallocating buffers... [0.02s] Loading trace points... [0.097s] Sorting trace points... [1.806s] Computing alignments... [54.642s] Deallocating buffers... [0.04s] Loading trace points... [0.099s] Sorting trace points... [1.783s] Computing alignments... [54.147s] Deallocating buffers... [0.081s] Loading trace points... [0s] Sorting trace points... [1.026s] Computing alignments... [26.755s] Deallocating buffers... [0.018s] Loading trace points... [0s] [458.866s] Deallocating reference... [0.072s] Loading reference sequences... [29.822s] Masking reference... [30.917s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.619s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.002s] Building query seed array... [2.93s] Computing hash join... [6.053s] Masking low complexity seeds... [0.318s] Searching alignments... [173.577s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.744s] Building query seed array... [3.987s] Computing hash join... [5.422s] Masking low complexity seeds... [0.294s] Searching alignments... [73.459s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.599s] Building query seed array... [3.639s] Computing hash join... [6.346s] Masking low complexity seeds... [0.312s] Searching alignments... [60.914s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.798s] Building query seed array... [3.172s] Computing hash join... [5.484s] Masking low complexity seeds... [0.295s] Searching alignments... [60.962s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.774s] Building query seed array... [2.968s] Computing hash join... [5.22s] Masking low complexity seeds... [0.311s] Searching alignments... [73.935s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.802s] Building query seed array... [3.317s] Computing hash join... [5.42s] Masking low complexity seeds... [0.287s] Searching alignments... [67.971s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.842s] Building query seed array... [3.441s] Computing hash join... [5.378s] Masking low complexity seeds... [0.291s] Searching alignments... [55.985s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.746s] Building query seed array... [2.99s] Computing hash join... [5.702s] Masking low complexity seeds... [0.32s] Searching alignments... [55.389s] Deallocating memory... [0s] Deallocating buffers... [2.139s] Clearing query masking... [1.978s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.368s] Sorting trace points... [2.08s] Computing alignments... [52.431s] Deallocating buffers... [0.029s] Loading trace points... [0.051s] Sorting trace points... [1.629s] Computing alignments... [54.773s] Deallocating buffers... [0.026s] Loading trace points... [0.109s] Sorting trace points... [1.956s] Computing alignments... [53.092s] Deallocating buffers... [0.023s] Loading trace points... [0.436s] Sorting trace points... [1.588s] Computing alignments... [54.112s] Deallocating buffers... [0.027s] Loading trace points... [0.049s] Sorting trace points... [2.021s] Computing alignments... [52.846s] Deallocating buffers... [0.038s] Loading trace points... [0.111s] Sorting trace points... [0.973s] Computing alignments... [28.123s] Deallocating buffers... [0.015s] Loading trace points... [0.132s] Sorting trace points... [1.835s] Computing alignments... [54.603s] Deallocating buffers... [0.037s] Loading trace points... [0.083s] Sorting trace points... [1.968s] Computing alignments... [54.006s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.024s] Computing alignments... [26.649s] Deallocating buffers... [0.019s] Loading trace points... [0s] [458.474s] Deallocating reference... [0.069s] Loading reference sequences... [30.175s] Masking reference... [30.975s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.066s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.472s] Building query seed array... [2.949s] Computing hash join... [6.438s] Masking low complexity seeds... [0.307s] Searching alignments... [171.081s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.884s] Building query seed array... [3.902s] Computing hash join... [6.457s] Masking low complexity seeds... [0.304s] Searching alignments... [76.494s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.793s] Building query seed array... [3.7s] Computing hash join... [6.17s] Masking low complexity seeds... [0.338s] Searching alignments... [63.662s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.619s] Building query seed array... [3.26s] Computing hash join... [6.164s] Masking low complexity seeds... [0.287s] Searching alignments... [59.807s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.251s] Building query seed array... [2.829s] Computing hash join... [6.011s] Masking low complexity seeds... [0.298s] Searching alignments... [77.117s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.34s] Building query seed array... [3.296s] Computing hash join... [6.219s] Masking low complexity seeds... [0.289s] Searching alignments... [70.111s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.541s] Building query seed array... [3.357s] Computing hash join... [6.062s] Masking low complexity seeds... [0.324s] Searching alignments... [56.101s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.268s] Building query seed array... [2.916s] Computing hash join... [6.326s] Masking low complexity seeds... [0.295s] Searching alignments... [54.636s] Deallocating memory... [0s] Deallocating buffers... [1.353s] Clearing query masking... [2.04s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.92s] Sorting trace points... [2.044s] Computing alignments... [51.132s] Deallocating buffers... [0.022s] Loading trace points... [0.118s] Sorting trace points... [1.478s] Computing alignments... [53.202s] Deallocating buffers... [0.038s] Loading trace points... [0.118s] Sorting trace points... [2.021s] Computing alignments... [51.7s] Deallocating buffers... [0.097s] Loading trace points... [0.167s] Sorting trace points... [2.226s] Computing alignments... [52.485s] Deallocating buffers... [0.241s] Loading trace points... [0.069s] Sorting trace points... [1.591s] Computing alignments... [51.322s] Deallocating buffers... [0.027s] Loading trace points... [0.049s] Sorting trace points... [0.817s] Computing alignments... [27.134s] Deallocating buffers... [0.013s] Loading trace points... [0.119s] Sorting trace points... [1.76s] Computing alignments... [52.983s] Deallocating buffers... [0.038s] Loading trace points... [0.092s] Sorting trace points... [2.08s] Computing alignments... [52.44s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.034s] Computing alignments... [26.153s] Deallocating buffers... [0.022s] Loading trace points... [0s] [445.98s] Deallocating reference... [0.091s] Loading reference sequences... [31.366s] Masking reference... [32.057s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.425s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.093s] Building query seed array... [2.973s] Computing hash join... [6.273s] Masking low complexity seeds... [0.303s] Searching alignments... [175.745s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.774s] Building query seed array... [4.118s] Computing hash join... [6.563s] Masking low complexity seeds... [0.302s] Searching alignments... [74.621s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.334s] Building query seed array... [3.66s] Computing hash join... [6.63s] Masking low complexity seeds... [0.309s] Searching alignments... [61.941s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.183s] Building query seed array... [3.251s] Computing hash join... [6.479s] Masking low complexity seeds... [0.3s] Searching alignments... [61.629s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.271s] Building query seed array... [2.898s] Computing hash join... [6.382s] Masking low complexity seeds... [0.288s] Searching alignments... [77.654s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.182s] Building query seed array... [3.398s] Computing hash join... [6.881s] Masking low complexity seeds... [0.326s] Searching alignments... [68.45s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.031s] Building query seed array... [3.423s] Computing hash join... [6.583s] Masking low complexity seeds... [0.282s] Searching alignments... [55.831s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.237s] Building query seed array... [2.95s] Computing hash join... [6.589s] Masking low complexity seeds... [0.29s] Searching alignments... [54.287s] Deallocating memory... [0s] Deallocating buffers... [1.201s] Clearing query masking... [2.09s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.564s] Sorting trace points... [2.102s] Computing alignments... [58.428s] Deallocating buffers... [0.056s] Loading trace points... [0.217s] Sorting trace points... [2.359s] Computing alignments... [60.059s] Deallocating buffers... [0.439s] Loading trace points... [0.125s] Sorting trace points... [1.671s] Computing alignments... [59.425s] Deallocating buffers... [0.061s] Loading trace points... [0.168s] Sorting trace points... [1.726s] Computing alignments... [59.506s] Deallocating buffers... [0.054s] Loading trace points... [0.055s] Sorting trace points... [1.593s] Computing alignments... [58.968s] Deallocating buffers... [0.048s] Loading trace points... [0.051s] Sorting trace points... [1.045s] Computing alignments... [30.699s] Deallocating buffers... [0.031s] Loading trace points... [0.253s] Sorting trace points... [1.707s] Computing alignments... [60.266s] Deallocating buffers... [0.062s] Loading trace points... [0.09s] Sorting trace points... [1.58s] Computing alignments... [59.08s] Deallocating buffers... [0.065s] Loading trace points... [0s] Sorting trace points... [1.029s] Computing alignments... [28.269s] Deallocating buffers... [0.027s] Loading trace points... [0s] [503.081s] Deallocating reference... [0.066s] Loading reference sequences... [29.751s] Masking reference... [30.93s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.215s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.345s] Building query seed array... [2.876s] Computing hash join... [6.516s] Masking low complexity seeds... [0.294s] Searching alignments... [176.166s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.253s] Building query seed array... [4.122s] Computing hash join... [6.815s] Masking low complexity seeds... [0.311s] Searching alignments... [75.092s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.394s] Building query seed array... [3.61s] Computing hash join... [6.753s] Masking low complexity seeds... [0.302s] Searching alignments... [63.188s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.266s] Building query seed array... [3.105s] Computing hash join... [6.706s] Masking low complexity seeds... [0.306s] Searching alignments... [62.185s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.014s] Building query seed array... [2.776s] Computing hash join... [6.378s] Masking low complexity seeds... [0.284s] Searching alignments... [75.399s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.085s] Building query seed array... [3.192s] Computing hash join... [6.253s] Masking low complexity seeds... [0.275s] Searching alignments... [68.022s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.667s] Building query seed array... [3.519s] Computing hash join... [6.511s] Masking low complexity seeds... [0.318s] Searching alignments... [55.613s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.315s] Building query seed array... [2.981s] Computing hash join... [6.442s] Masking low complexity seeds... [0.286s] Searching alignments... [53.951s] Deallocating memory... [0s] Deallocating buffers... [0.895s] Clearing query masking... [2.146s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.575s] Sorting trace points... [1.692s] Computing alignments... [50.858s] Deallocating buffers... [0.026s] Loading trace points... [0.054s] Sorting trace points... [1.992s] Computing alignments... [52.618s] Deallocating buffers... [0.029s] Loading trace points... [0.188s] Sorting trace points... [1.599s] Computing alignments... [51.777s] Deallocating buffers... [0.025s] Loading trace points... [0.202s] Sorting trace points... [1.954s] Computing alignments... [52.205s] Deallocating buffers... [0.033s] Loading trace points... [0.058s] Sorting trace points... [1.85s] Computing alignments... [50.833s] Deallocating buffers... [0.028s] Loading trace points... [0.168s] Sorting trace points... [1.048s] Computing alignments... [26.66s] Deallocating buffers... [0.033s] Loading trace points... [0.105s] Sorting trace points... [2.089s] Computing alignments... [52.521s] Deallocating buffers... [0.024s] Loading trace points... [0.075s] Sorting trace points... [1.876s] Computing alignments... [51.457s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [0.999s] Computing alignments... [25.541s] Deallocating buffers... [0.012s] Loading trace points... [0s] [442.529s] Deallocating reference... [0.065s] Loading reference sequences... [30.409s] Masking reference... [31.209s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.9s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.331s] Building query seed array... [2.994s] Computing hash join... [6.125s] Masking low complexity seeds... [0.313s] Searching alignments... [174.983s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.39s] Building query seed array... [4.012s] Computing hash join... [6.397s] Masking low complexity seeds... [0.301s] Searching alignments... [75.21s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.27s] Building query seed array... [3.938s] Computing hash join... [5.841s] Masking low complexity seeds... [0.306s] Searching alignments... [63.931s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.394s] Building query seed array... [3.231s] Computing hash join... [5.705s] Masking low complexity seeds... [0.305s] Searching alignments... [62.431s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.605s] Building query seed array... [2.942s] Computing hash join... [5.789s] Masking low complexity seeds... [0.306s] Searching alignments... [79.627s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.469s] Building query seed array... [3.295s] Computing hash join... [5.885s] Masking low complexity seeds... [0.294s] Searching alignments... [70.95s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.57s] Building query seed array... [3.525s] Computing hash join... [5.724s] Masking low complexity seeds... [0.292s] Searching alignments... [56.283s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.477s] Building query seed array... [3.025s] Computing hash join... [5.889s] Masking low complexity seeds... [0.284s] Searching alignments... [55.658s] Deallocating memory... [0s] Deallocating buffers... [1.701s] Clearing query masking... [2.074s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.382s] Sorting trace points... [2.129s] Computing alignments... [59.849s] Deallocating buffers... [0.041s] Loading trace points... [0.122s] Sorting trace points... [1.77s] Computing alignments... [61.42s] Deallocating buffers... [0.04s] Loading trace points... [0.182s] Sorting trace points... [1.672s] Computing alignments... [60.162s] Deallocating buffers... [0.043s] Loading trace points... [0.059s] Sorting trace points... [2.049s] Computing alignments... [60.783s] Deallocating buffers... [0.055s] Loading trace points... [0.059s] Sorting trace points... [1.551s] Computing alignments... [59.901s] Deallocating buffers... [0.058s] Loading trace points... [0.154s] Sorting trace points... [1.067s] Computing alignments... [31.356s] Deallocating buffers... [0.027s] Loading trace points... [0.209s] Sorting trace points... [2.093s] Computing alignments... [61.109s] Deallocating buffers... [0.032s] Loading trace points... [0.076s] Sorting trace points... [1.567s] Computing alignments... [60.824s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [0.998s] Computing alignments... [29.271s] Deallocating buffers... [0.025s] Loading trace points... [0s] [512.395s] Deallocating reference... [0.11s] Loading reference sequences... [29.93s] Masking reference... [31.894s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.788s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.298s] Building query seed array... [3.08s] Computing hash join... [6.69s] Masking low complexity seeds... [0.298s] Searching alignments... [170.814s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.715s] Building query seed array... [4.085s] Computing hash join... [6.702s] Masking low complexity seeds... [0.301s] Searching alignments... [75.52s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.585s] Building query seed array... [3.833s] Computing hash join... [6.747s] Masking low complexity seeds... [0.3s] Searching alignments... [63.67s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.108s] Building query seed array... [3.274s] Computing hash join... [6.587s] Masking low complexity seeds... [0.292s] Searching alignments... [61.776s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.142s] Building query seed array... [2.783s] Computing hash join... [6.459s] Masking low complexity seeds... [0.286s] Searching alignments... [78.751s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.177s] Building query seed array... [3.326s] Computing hash join... [6.664s] Masking low complexity seeds... [0.292s] Searching alignments... [69.948s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.309s] Building query seed array... [3.498s] Computing hash join... [6.496s] Masking low complexity seeds... [0.282s] Searching alignments... [56.097s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.019s] Building query seed array... [2.788s] Computing hash join... [6.454s] Masking low complexity seeds... [0.282s] Searching alignments... [55.608s] Deallocating memory... [0s] Deallocating buffers... [1.097s] Clearing query masking... [2.146s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.497s] Sorting trace points... [1.791s] Computing alignments... [59.418s] Deallocating buffers... [0.087s] Loading trace points... [0.175s] Sorting trace points... [1.013s] Computing alignments... [31.493s] Deallocating buffers... [0.06s] Loading trace points... [0.178s] Sorting trace points... [1.81s] Computing alignments... [60.318s] Deallocating buffers... [0.051s] Loading trace points... [0.128s] Sorting trace points... [1.634s] Computing alignments... [59.84s] Deallocating buffers... [0.063s] Loading trace points... [0.291s] Sorting trace points... [1.827s] Computing alignments... [60.989s] Deallocating buffers... [0.069s] Loading trace points... [0.112s] Sorting trace points... [1.823s] Computing alignments... [61.188s] Deallocating buffers... [0.083s] Loading trace points... [0.136s] Sorting trace points... [1.095s] Computing alignments... [32.353s] Deallocating buffers... [0.044s] Loading trace points... [0.142s] Sorting trace points... [1.73s] Computing alignments... [60.847s] Deallocating buffers... [0.071s] Loading trace points... [0s] Sorting trace points... [2.265s] Computing alignments... [58.881s] Deallocating buffers... [0.242s] Loading trace points... [0s] [514.11s] Deallocating reference... [0.074s] Loading reference sequences... [29.07s] Masking reference... [32.113s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.532s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.292s] Building query seed array... [3.035s] Computing hash join... [5.929s] Masking low complexity seeds... [0.322s] Searching alignments... [175.905s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.756s] Building query seed array... [4.056s] Computing hash join... [6.139s] Masking low complexity seeds... [0.319s] Searching alignments... [73.786s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.389s] Building query seed array... [3.726s] Computing hash join... [6.363s] Masking low complexity seeds... [0.35s] Searching alignments... [61.616s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.018s] Building query seed array... [3.218s] Computing hash join... [6.173s] Masking low complexity seeds... [0.306s] Searching alignments... [62.981s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.236s] Building query seed array... [2.894s] Computing hash join... [5.759s] Masking low complexity seeds... [0.271s] Searching alignments... [76.301s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.437s] Building query seed array... [3.238s] Computing hash join... [5.712s] Masking low complexity seeds... [0.322s] Searching alignments... [69.892s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.13s] Building query seed array... [3.484s] Computing hash join... [6.073s] Masking low complexity seeds... [0.352s] Searching alignments... [54.844s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.042s] Building query seed array... [2.849s] Computing hash join... [5.861s] Masking low complexity seeds... [0.28s] Searching alignments... [55.259s] Deallocating memory... [0s] Deallocating buffers... [1.505s] Clearing query masking... [2.003s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.746s] Sorting trace points... [1.92s] Computing alignments... [57.711s] Deallocating buffers... [0.035s] Loading trace points... [0.1s] Sorting trace points... [1.681s] Computing alignments... [59.144s] Deallocating buffers... [0.039s] Loading trace points... [0.112s] Sorting trace points... [1.934s] Computing alignments... [57.891s] Deallocating buffers... [0.082s] Loading trace points... [0.071s] Sorting trace points... [1.677s] Computing alignments... [58.247s] Deallocating buffers... [0.026s] Loading trace points... [0.065s] Sorting trace points... [1.621s] Computing alignments... [57.884s] Deallocating buffers... [0.026s] Loading trace points... [0.115s] Sorting trace points... [1.059s] Computing alignments... [30.242s] Deallocating buffers... [0.022s] Loading trace points... [0.737s] Sorting trace points... [2.136s] Computing alignments... [59.017s] Deallocating buffers... [0.028s] Loading trace points... [0.622s] Sorting trace points... [1.673s] Computing alignments... [58.458s] Deallocating buffers... [0.038s] Loading trace points... [0s] Sorting trace points... [0.994s] Computing alignments... [28.189s] Deallocating buffers... [0.018s] Loading trace points... [0s] [495.586s] Deallocating reference... [0.082s] Loading reference sequences... [23.502s] Masking reference... [25.046s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.008s] Building reference histograms... [26.647s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.386s] Building query seed array... [3.005s] Computing hash join... [5.189s] Masking low complexity seeds... [0.291s] Searching alignments... [142.274s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.598s] Building query seed array... [3.803s] Computing hash join... [4.733s] Masking low complexity seeds... [0.3s] Searching alignments... [59.175s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.955s] Building query seed array... [3.731s] Computing hash join... [4.729s] Masking low complexity seeds... [0.286s] Searching alignments... [50.912s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.621s] Building query seed array... [3.125s] Computing hash join... [4.427s] Masking low complexity seeds... [0.275s] Searching alignments... [50.055s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.587s] Building query seed array... [2.873s] Computing hash join... [4.457s] Masking low complexity seeds... [0.255s] Searching alignments... [65.405s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.082s] Building query seed array... [3.3s] Computing hash join... [4.319s] Masking low complexity seeds... [0.265s] Searching alignments... [56.915s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.476s] Building query seed array... [3.412s] Computing hash join... [4.432s] Masking low complexity seeds... [0.258s] Searching alignments... [46.204s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.697s] Building query seed array... [2.928s] Computing hash join... [4.346s] Masking low complexity seeds... [0.26s] Searching alignments... [44.773s] Deallocating memory... [0s] Deallocating buffers... [1.229s] Clearing query masking... [2.047s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.612s] Sorting trace points... [1.686s] Computing alignments... [45.092s] Deallocating buffers... [0.028s] Loading trace points... [0.153s] Sorting trace points... [1.51s] Computing alignments... [46.283s] Deallocating buffers... [0.03s] Loading trace points... [0.143s] Sorting trace points... [1.667s] Computing alignments... [46.015s] Deallocating buffers... [0.025s] Loading trace points... [0.114s] Sorting trace points... [1.403s] Computing alignments... [46.313s] Deallocating buffers... [0.03s] Loading trace points... [0.149s] Sorting trace points... [1.341s] Computing alignments... [45.205s] Deallocating buffers... [0.022s] Loading trace points... [0.156s] Sorting trace points... [1.712s] Computing alignments... [47.256s] Deallocating buffers... [0.04s] Loading trace points... [0.178s] Sorting trace points... [1.633s] Computing alignments... [45.154s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.599s] Computing alignments... [45.014s] Deallocating buffers... [0.032s] Loading trace points... [0s] [389.851s] Deallocating reference... [0.057s] Loading reference sequences... [0.076s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1761.93s] [1761.93s] Deallocating queries... [0.079s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.883s] [3.888s] Closing the database... [0s] Cleaning up... [0s] Total time = 21070.8s Reported 1623145927 pairwise alignments, 1623145927 HSPs. 4887125 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-07.trimmed.R1.fastq.gz complete: CH05-07.trimmed.R1.blastx.meganized.daa Now MEGANizing CH05-07.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-07.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (271.3s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2,867.6s) Total reads: 4,887,125 With hits: 4,887,125 Alignments: 1,374,383,695 Assig. Taxonomy: 2,204,450 Assig. SEED: 72,634 Assig. EGGNOG: 22,005 Assig. GTDB: 152,976 Assig. EC: 296,566 Assig. INTERPRO2GO: 912,278 MinSupport set to: 2443 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 4,615 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.6s) Min-supp. changes: 3,042 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5.1s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 165 Class. SEED: 483 Class. EGGNOG: 1,560 Class. GTDB: 39 Class. EC: 2,206 Class. INTERPRO2GO: 8,608 Total time: 3,163s Peak memory: 30.5 of 195.3G MEGANization of CH05-07.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-07.trimmed.R2.fastq.gz... e6ae3d5914e23f4257923b8ba0b01bd4 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-07.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-07.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.291s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.752s] Opening the output file... [0s] Loading query sequences... [127.057s] Masking queries... [37.142s] Algorithm: Double-indexed Building query histograms... [32.614s] Loading reference sequences... [29.275s] Masking reference... [30.847s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.93s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.976s] Building query seed array... [3.014s] Computing hash join... [6.672s] Masking low complexity seeds... [0.581s] Searching alignments... [191.277s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.11s] Building query seed array... [3.794s] Computing hash join... [5.895s] Masking low complexity seeds... [0.327s] Searching alignments... [80.219s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.29s] Building query seed array... [3.831s] Computing hash join... [5.713s] Masking low complexity seeds... [0.382s] Searching alignments... [64.843s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.755s] Building query seed array... [3.261s] Computing hash join... [5.533s] Masking low complexity seeds... [0.415s] Searching alignments... [65.27s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.351s] Building query seed array... [2.917s] Computing hash join... [6.2s] Masking low complexity seeds... [0.31s] Searching alignments... [81.73s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.072s] Building query seed array... [3.26s] Computing hash join... [5.353s] Masking low complexity seeds... [0.296s] Searching alignments... [72.551s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.081s] Building query seed array... [3.611s] Computing hash join... [5.304s] Masking low complexity seeds... [0.317s] Searching alignments... [57.186s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.355s] Building query seed array... [2.969s] Computing hash join... [5.598s] Masking low complexity seeds... [0.304s] Searching alignments... [59.513s] Deallocating memory... [0s] Deallocating buffers... [1.791s] Clearing query masking... [2.163s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.657s] Sorting trace points... [2.091s] Computing alignments... [54.31s] Deallocating buffers... [0.024s] Loading trace points... [0.055s] Sorting trace points... [0.916s] Computing alignments... [28.009s] Deallocating buffers... [0.014s] Loading trace points... [0.103s] Sorting trace points... [1.065s] Computing alignments... [28.666s] Deallocating buffers... [0.013s] Loading trace points... [0.047s] Sorting trace points... [2.033s] Computing alignments... [54.708s] Deallocating buffers... [0.035s] Loading trace points... [0.052s] Sorting trace points... [0.833s] Computing alignments... [27.122s] Deallocating buffers... [0.014s] Loading trace points... [0.148s] Sorting trace points... [0.855s] Computing alignments... [28.402s] Deallocating buffers... [0.02s] Loading trace points... [0.051s] Sorting trace points... [2.036s] Computing alignments... [54.48s] Deallocating buffers... [0.023s] Loading trace points... [0.047s] Sorting trace points... [0.775s] Computing alignments... [28.008s] Deallocating buffers... [0.013s] Loading trace points... [1.107s] Sorting trace points... [0.946s] Computing alignments... [28.493s] Deallocating buffers... [0.015s] Loading trace points... [0.167s] Sorting trace points... [2.046s] Computing alignments... [53.636s] Deallocating buffers... [0.035s] Loading trace points... [0s] Sorting trace points... [1.667s] Computing alignments... [53.648s] Deallocating buffers... [0.039s] Loading trace points... [0s] [468.688s] Deallocating reference... [0.058s] Loading reference sequences... [29.235s] Masking reference... [31.565s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.976s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.045s] Building query seed array... [2.953s] Computing hash join... [6.451s] Masking low complexity seeds... [0.433s] Searching alignments... [185.404s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.491s] Building query seed array... [3.838s] Computing hash join... [6.009s] Masking low complexity seeds... [0.367s] Searching alignments... [76.987s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.058s] Building query seed array... [3.621s] Computing hash join... [5.804s] Masking low complexity seeds... [0.347s] Searching alignments... [63.603s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.752s] Building query seed array... [3.034s] Computing hash join... [5.644s] Masking low complexity seeds... [0.41s] Searching alignments... [63.916s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.45s] Building query seed array... [2.829s] Computing hash join... [5.328s] Masking low complexity seeds... [0.324s] Searching alignments... [85.253s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.442s] Building query seed array... [3.216s] Computing hash join... [5.671s] Masking low complexity seeds... [0.347s] Searching alignments... [72.798s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.319s] Building query seed array... [3.455s] Computing hash join... [5.358s] Masking low complexity seeds... [0.309s] Searching alignments... [57.856s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.475s] Building query seed array... [2.919s] Computing hash join... [5.336s] Masking low complexity seeds... [0.329s] Searching alignments... [59.243s] Deallocating memory... [0s] Deallocating buffers... [1.605s] Clearing query masking... [2.015s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.968s] Sorting trace points... [2.036s] Computing alignments... [57.758s] Deallocating buffers... [0.036s] Loading trace points... [0.085s] Sorting trace points... [0.919s] Computing alignments... [29.701s] Deallocating buffers... [0.028s] Loading trace points... [0.152s] Sorting trace points... [2.043s] Computing alignments... [59.32s] Deallocating buffers... [0.047s] Loading trace points... [0.137s] Sorting trace points... [2.058s] Computing alignments... [58.04s] Deallocating buffers... [0.045s] Loading trace points... [0.097s] Sorting trace points... [1.77s] Computing alignments... [58.944s] Deallocating buffers... [0.039s] Loading trace points... [0.058s] Sorting trace points... [2.167s] Computing alignments... [58.628s] Deallocating buffers... [0.245s] Loading trace points... [0.058s] Sorting trace points... [1.775s] Computing alignments... [57.811s] Deallocating buffers... [0.048s] Loading trace points... [0.078s] Sorting trace points... [1.83s] Computing alignments... [57.071s] Deallocating buffers... [0.043s] Loading trace points... [0s] Sorting trace points... [0.97s] Computing alignments... [27.932s] Deallocating buffers... [0.029s] Loading trace points... [0s] [493.234s] Deallocating reference... [0.075s] Loading reference sequences... [29.356s] Masking reference... [30.957s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.505s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.487s] Building query seed array... [3.027s] Computing hash join... [6.093s] Masking low complexity seeds... [0.334s] Searching alignments... [182.054s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.141s] Building query seed array... [4.085s] Computing hash join... [5.809s] Masking low complexity seeds... [0.33s] Searching alignments... [76.206s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.82s] Building query seed array... [3.753s] Computing hash join... [5.449s] Masking low complexity seeds... [0.34s] Searching alignments... [64.423s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.845s] Building query seed array... [3.324s] Computing hash join... [5.532s] Masking low complexity seeds... [0.327s] Searching alignments... [61.893s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.82s] Building query seed array... [2.918s] Computing hash join... [5.676s] Masking low complexity seeds... [0.384s] Searching alignments... [82.502s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.784s] Building query seed array... [3.306s] Computing hash join... [5.523s] Masking low complexity seeds... [0.364s] Searching alignments... [72.136s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.543s] Building query seed array... [3.421s] Computing hash join... [5.562s] Masking low complexity seeds... [0.327s] Searching alignments... [57.227s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.39s] Building query seed array... [3.051s] Computing hash join... [5.493s] Masking low complexity seeds... [0.355s] Searching alignments... [58.33s] Deallocating memory... [0s] Deallocating buffers... [1.439s] Clearing query masking... [1.998s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.769s] Sorting trace points... [2.065s] Computing alignments... [57.213s] Deallocating buffers... [0.047s] Loading trace points... [0.156s] Sorting trace points... [0.827s] Computing alignments... [29.567s] Deallocating buffers... [0.03s] Loading trace points... [0.199s] Sorting trace points... [1.728s] Computing alignments... [58.84s] Deallocating buffers... [0.028s] Loading trace points... [0.146s] Sorting trace points... [1.691s] Computing alignments... [57.834s] Deallocating buffers... [0.056s] Loading trace points... [0.151s] Sorting trace points... [2.077s] Computing alignments... [57.529s] Deallocating buffers... [0.058s] Loading trace points... [0.126s] Sorting trace points... [1.684s] Computing alignments... [58.328s] Deallocating buffers... [0.044s] Loading trace points... [0.137s] Sorting trace points... [1.74s] Computing alignments... [56.972s] Deallocating buffers... [0.04s] Loading trace points... [0.076s] Sorting trace points... [1.617s] Computing alignments... [56.691s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [0.806s] Computing alignments... [27.71s] Deallocating buffers... [0.017s] Loading trace points... [0s] [487.21s] Deallocating reference... [0.069s] Loading reference sequences... [30.275s] Masking reference... [31.577s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.915s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.344s] Building query seed array... [2.841s] Computing hash join... [5.884s] Masking low complexity seeds... [0.335s] Searching alignments... [183.995s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.092s] Building query seed array... [3.69s] Computing hash join... [6.362s] Masking low complexity seeds... [0.337s] Searching alignments... [79.45s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.26s] Building query seed array... [3.654s] Computing hash join... [6.368s] Masking low complexity seeds... [0.35s] Searching alignments... [64.954s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.079s] Building query seed array... [3.162s] Computing hash join... [6.463s] Masking low complexity seeds... [0.335s] Searching alignments... [63.372s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.831s] Building query seed array... [2.86s] Computing hash join... [6.11s] Masking low complexity seeds... [0.312s] Searching alignments... [83.66s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.339s] Building query seed array... [3.15s] Computing hash join... [6.469s] Masking low complexity seeds... [0.399s] Searching alignments... [71.881s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.207s] Building query seed array... [3.332s] Computing hash join... [6.691s] Masking low complexity seeds... [0.313s] Searching alignments... [58.38s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.123s] Building query seed array... [2.831s] Computing hash join... [6.444s] Masking low complexity seeds... [0.369s] Searching alignments... [57.698s] Deallocating memory... [0s] Deallocating buffers... [0.918s] Clearing query masking... [2.064s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.575s] Sorting trace points... [2.115s] Computing alignments... [58.959s] Deallocating buffers... [0.036s] Loading trace points... [0.05s] Sorting trace points... [0.996s] Computing alignments... [30.43s] Deallocating buffers... [0.025s] Loading trace points... [0.075s] Sorting trace points... [0.926s] Computing alignments... [31.659s] Deallocating buffers... [0.021s] Loading trace points... [0.002s] Sorting trace points... [1.795s] Computing alignments... [59.402s] Deallocating buffers... [0.046s] Loading trace points... [0.153s] Sorting trace points... [0.829s] Computing alignments... [30.125s] Deallocating buffers... [0.031s] Loading trace points... [0.88s] Sorting trace points... [1.788s] Computing alignments... [59.548s] Deallocating buffers... [0.03s] Loading trace points... [1.277s] Sorting trace points... [2.147s] Computing alignments... [59.605s] Deallocating buffers... [0.049s] Loading trace points... [0.118s] Sorting trace points... [2.022s] Computing alignments... [59.287s] Deallocating buffers... [0.045s] Loading trace points... [0.072s] Sorting trace points... [1.674s] Computing alignments... [59.502s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.029s] Computing alignments... [28.765s] Deallocating buffers... [0.018s] Loading trace points... [0s] [507.342s] Deallocating reference... [0.064s] Loading reference sequences... [29.072s] Masking reference... [30.916s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.975s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.238s] Building query seed array... [3.017s] Computing hash join... [6.254s] Masking low complexity seeds... [0.346s] Searching alignments... [183.88s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.603s] Building query seed array... [3.858s] Computing hash join... [6.23s] Masking low complexity seeds... [0.387s] Searching alignments... [78.21s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.527s] Building query seed array... [3.717s] Computing hash join... [5.995s] Masking low complexity seeds... [0.319s] Searching alignments... [64.043s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.355s] Building query seed array... [3.237s] Computing hash join... [5.868s] Masking low complexity seeds... [0.354s] Searching alignments... [63.711s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.967s] Building query seed array... [2.883s] Computing hash join... [5.757s] Masking low complexity seeds... [0.33s] Searching alignments... [84.35s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.07s] Building query seed array... [3.184s] Computing hash join... [5.789s] Masking low complexity seeds... [0.316s] Searching alignments... [73.258s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.625s] Building query seed array... [3.344s] Computing hash join... [5.907s] Masking low complexity seeds... [0.314s] Searching alignments... [57.214s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.385s] Building query seed array... [2.959s] Computing hash join... [5.665s] Masking low complexity seeds... [0.333s] Searching alignments... [56.332s] Deallocating memory... [0s] Deallocating buffers... [1.319s] Clearing query masking... [2.091s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.723s] Sorting trace points... [2.093s] Computing alignments... [60.579s] Deallocating buffers... [0.059s] Loading trace points... [0.002s] Sorting trace points... [1.047s] Computing alignments... [31.343s] Deallocating buffers... [0.037s] Loading trace points... [0.177s] Sorting trace points... [0.878s] Computing alignments... [32.666s] Deallocating buffers... [0.035s] Loading trace points... [0.092s] Sorting trace points... [1.662s] Computing alignments... [62.107s] Deallocating buffers... [0.05s] Loading trace points... [0.209s] Sorting trace points... [1.055s] Computing alignments... [30.789s] Deallocating buffers... [0.038s] Loading trace points... [0.158s] Sorting trace points... [1.967s] Computing alignments... [61.857s] Deallocating buffers... [0.05s] Loading trace points... [0.131s] Sorting trace points... [2.134s] Computing alignments... [62.215s] Deallocating buffers... [0.037s] Loading trace points... [0.13s] Sorting trace points... [1.582s] Computing alignments... [61.137s] Deallocating buffers... [0.052s] Loading trace points... [0.069s] Sorting trace points... [2.057s] Computing alignments... [61.073s] Deallocating buffers... [0.063s] Loading trace points... [0s] Sorting trace points... [1.074s] Computing alignments... [29.577s] Deallocating buffers... [0.023s] Loading trace points... [0s] [521.249s] Deallocating reference... [0.057s] Loading reference sequences... [29.905s] Masking reference... [31.02s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.292s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.47s] Building query seed array... [3.023s] Computing hash join... [6.042s] Masking low complexity seeds... [0.339s] Searching alignments... [183.86s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.579s] Building query seed array... [3.707s] Computing hash join... [6.356s] Masking low complexity seeds... [0.361s] Searching alignments... [79.942s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.532s] Building query seed array... [3.734s] Computing hash join... [6.509s] Masking low complexity seeds... [0.395s] Searching alignments... [64.882s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.096s] Building query seed array... [3.032s] Computing hash join... [6.281s] Masking low complexity seeds... [0.326s] Searching alignments... [62.749s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.215s] Building query seed array... [2.892s] Computing hash join... [6.263s] Masking low complexity seeds... [0.309s] Searching alignments... [81.335s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.18s] Building query seed array... [3.225s] Computing hash join... [6.519s] Masking low complexity seeds... [0.307s] Searching alignments... [75.602s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.957s] Building query seed array... [3.449s] Computing hash join... [6.332s] Masking low complexity seeds... [0.325s] Searching alignments... [57.37s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.866s] Building query seed array... [2.928s] Computing hash join... [6.308s] Masking low complexity seeds... [0.303s] Searching alignments... [57.048s] Deallocating memory... [0s] Deallocating buffers... [0.729s] Clearing query masking... [2.078s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.714s] Sorting trace points... [1.754s] Computing alignments... [53.974s] Deallocating buffers... [0.041s] Loading trace points... [0.221s] Sorting trace points... [0.804s] Computing alignments... [28.55s] Deallocating buffers... [0.02s] Loading trace points... [0.172s] Sorting trace points... [2.153s] Computing alignments... [54.698s] Deallocating buffers... [0.029s] Loading trace points... [0.151s] Sorting trace points... [1.997s] Computing alignments... [54.704s] Deallocating buffers... [0.035s] Loading trace points... [0.077s] Sorting trace points... [1.682s] Computing alignments... [54.599s] Deallocating buffers... [0.039s] Loading trace points... [0.092s] Sorting trace points... [2.049s] Computing alignments... [55.035s] Deallocating buffers... [0.036s] Loading trace points... [0.138s] Sorting trace points... [2.109s] Computing alignments... [54.437s] Deallocating buffers... [0.03s] Loading trace points... [0.069s] Sorting trace points... [1.6s] Computing alignments... [54.04s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [1.009s] Computing alignments... [26.141s] Deallocating buffers... [0.018s] Loading trace points... [0s] [464.484s] Deallocating reference... [0.071s] Loading reference sequences... [30.56s] Masking reference... [31.47s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [33.462s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.274s] Building query seed array... [3.099s] Computing hash join... [6.108s] Masking low complexity seeds... [0.335s] Searching alignments... [186.921s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.928s] Building query seed array... [3.863s] Computing hash join... [5.902s] Masking low complexity seeds... [0.35s] Searching alignments... [79.071s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.664s] Building query seed array... [3.673s] Computing hash join... [5.433s] Masking low complexity seeds... [0.359s] Searching alignments... [63.574s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.019s] Building query seed array... [3.235s] Computing hash join... [5.856s] Masking low complexity seeds... [0.342s] Searching alignments... [63.223s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.387s] Building query seed array... [2.954s] Computing hash join... [5.598s] Masking low complexity seeds... [0.331s] Searching alignments... [80.196s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.999s] Building query seed array... [3.328s] Computing hash join... [5.309s] Masking low complexity seeds... [0.327s] Searching alignments... [72.29s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.417s] Building query seed array... [3.281s] Computing hash join... [6.018s] Masking low complexity seeds... [0.306s] Searching alignments... [56.864s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.89s] Building query seed array... [2.867s] Computing hash join... [6.069s] Masking low complexity seeds... [0.329s] Searching alignments... [57.866s] Deallocating memory... [0s] Deallocating buffers... [1.661s] Clearing query masking... [2.043s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.67s] Sorting trace points... [1.828s] Computing alignments... [53.852s] Deallocating buffers... [0.047s] Loading trace points... [0.168s] Sorting trace points... [1.018s] Computing alignments... [28.396s] Deallocating buffers... [0.018s] Loading trace points... [0.15s] Sorting trace points... [1.667s] Computing alignments... [54.887s] Deallocating buffers... [0.027s] Loading trace points... [0.148s] Sorting trace points... [1.841s] Computing alignments... [54.654s] Deallocating buffers... [0.025s] Loading trace points... [0.066s] Sorting trace points... [1.91s] Computing alignments... [54.511s] Deallocating buffers... [0.028s] Loading trace points... [0.055s] Sorting trace points... [1.962s] Computing alignments... [55.358s] Deallocating buffers... [0.148s] Loading trace points... [0.063s] Sorting trace points... [2.011s] Computing alignments... [54.846s] Deallocating buffers... [0.034s] Loading trace points... [0.073s] Sorting trace points... [2.093s] Computing alignments... [53.76s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [0.993s] Computing alignments... [26.088s] Deallocating buffers... [0.018s] Loading trace points... [0s] [464.676s] Deallocating reference... [0.082s] Loading reference sequences... [30.819s] Masking reference... [30.937s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.296s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.212s] Building query seed array... [2.969s] Computing hash join... [5.951s] Masking low complexity seeds... [0.33s] Searching alignments... [181.065s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.1s] Building query seed array... [3.885s] Computing hash join... [5.824s] Masking low complexity seeds... [0.343s] Searching alignments... [77.761s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.863s] Building query seed array... [3.695s] Computing hash join... [5.841s] Masking low complexity seeds... [0.342s] Searching alignments... [64.415s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.557s] Building query seed array... [3.178s] Computing hash join... [5.593s] Masking low complexity seeds... [0.347s] Searching alignments... [63.876s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.188s] Building query seed array... [2.835s] Computing hash join... [5.323s] Masking low complexity seeds... [0.314s] Searching alignments... [81.313s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.855s] Building query seed array... [3.316s] Computing hash join... [5.457s] Masking low complexity seeds... [0.344s] Searching alignments... [74.251s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.939s] Building query seed array... [3.487s] Computing hash join... [5.536s] Masking low complexity seeds... [0.381s] Searching alignments... [57.519s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.281s] Building query seed array... [2.905s] Computing hash join... [5.801s] Masking low complexity seeds... [0.319s] Searching alignments... [56.655s] Deallocating memory... [0s] Deallocating buffers... [1.67s] Clearing query masking... [2.053s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.318s] Sorting trace points... [1.882s] Computing alignments... [53.24s] Deallocating buffers... [0.028s] Loading trace points... [0.194s] Sorting trace points... [1.031s] Computing alignments... [27.517s] Deallocating buffers... [0.015s] Loading trace points... [0.145s] Sorting trace points... [1.576s] Computing alignments... [53.664s] Deallocating buffers... [0.027s] Loading trace points... [0.154s] Sorting trace points... [2.05s] Computing alignments... [53.015s] Deallocating buffers... [0.048s] Loading trace points... [0.22s] Sorting trace points... [1.663s] Computing alignments... [53.306s] Deallocating buffers... [0.03s] Loading trace points... [0.128s] Sorting trace points... [2.118s] Computing alignments... [53.712s] Deallocating buffers... [0.043s] Loading trace points... [1.034s] Sorting trace points... [2.521s] Computing alignments... [52.841s] Deallocating buffers... [0.18s] Loading trace points... [0.059s] Sorting trace points... [1.937s] Computing alignments... [52.397s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [0.96s] Computing alignments... [25.557s] Deallocating buffers... [0.02s] Loading trace points... [0s] [454.828s] Deallocating reference... [0.106s] Loading reference sequences... [30.986s] Masking reference... [30.882s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.277s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.33s] Building query seed array... [2.951s] Computing hash join... [6.53s] Masking low complexity seeds... [0.544s] Searching alignments... [182.695s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.712s] Building query seed array... [3.877s] Computing hash join... [6.007s] Masking low complexity seeds... [0.333s] Searching alignments... [76.467s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.006s] Building query seed array... [3.793s] Computing hash join... [6.11s] Masking low complexity seeds... [0.356s] Searching alignments... [64.234s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.861s] Building query seed array... [3.065s] Computing hash join... [5.793s] Masking low complexity seeds... [0.408s] Searching alignments... [64.93s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.044s] Building query seed array... [2.93s] Computing hash join... [6.132s] Masking low complexity seeds... [0.36s] Searching alignments... [80.463s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.285s] Building query seed array... [3.146s] Computing hash join... [6.012s] Masking low complexity seeds... [0.38s] Searching alignments... [75.826s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.841s] Building query seed array... [3.326s] Computing hash join... [5.999s] Masking low complexity seeds... [0.32s] Searching alignments... [57.765s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.769s] Building query seed array... [2.977s] Computing hash join... [6.179s] Masking low complexity seeds... [0.382s] Searching alignments... [59.438s] Deallocating memory... [0s] Deallocating buffers... [1.853s] Clearing query masking... [1.981s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.404s] Sorting trace points... [2.103s] Computing alignments... [59.305s] Deallocating buffers... [0.047s] Loading trace points... [0.17s] Sorting trace points... [1.032s] Computing alignments... [31.136s] Deallocating buffers... [0.042s] Loading trace points... [0.161s] Sorting trace points... [1.665s] Computing alignments... [61.56s] Deallocating buffers... [0.068s] Loading trace points... [0.186s] Sorting trace points... [1.908s] Computing alignments... [60.415s] Deallocating buffers... [0.072s] Loading trace points... [0.182s] Sorting trace points... [2.478s] Computing alignments... [60.49s] Deallocating buffers... [0.328s] Loading trace points... [0.162s] Sorting trace points... [1.735s] Computing alignments... [60.721s] Deallocating buffers... [0.066s] Loading trace points... [0.24s] Sorting trace points... [2.134s] Computing alignments... [59.603s] Deallocating buffers... [0.053s] Loading trace points... [0.07s] Sorting trace points... [1.768s] Computing alignments... [60.549s] Deallocating buffers... [0.175s] Loading trace points... [0s] Sorting trace points... [0.956s] Computing alignments... [28.857s] Deallocating buffers... [0.034s] Loading trace points... [0s] [512.149s] Deallocating reference... [0.086s] Loading reference sequences... [29.346s] Masking reference... [30.929s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.394s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.58s] Building query seed array... [3.035s] Computing hash join... [6.399s] Masking low complexity seeds... [0.334s] Searching alignments... [185.915s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.176s] Building query seed array... [4.022s] Computing hash join... [6.101s] Masking low complexity seeds... [0.338s] Searching alignments... [78.729s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.577s] Building query seed array... [3.754s] Computing hash join... [5.326s] Masking low complexity seeds... [0.371s] Searching alignments... [64.91s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.857s] Building query seed array... [3.32s] Computing hash join... [5.422s] Masking low complexity seeds... [0.349s] Searching alignments... [63.22s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.116s] Building query seed array... [2.98s] Computing hash join... [5.324s] Masking low complexity seeds... [0.336s] Searching alignments... [81.909s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.968s] Building query seed array... [3.172s] Computing hash join... [5.523s] Masking low complexity seeds... [0.3s] Searching alignments... [74.678s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.973s] Building query seed array... [3.443s] Computing hash join... [5.603s] Masking low complexity seeds... [0.332s] Searching alignments... [57.515s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.135s] Building query seed array... [3.019s] Computing hash join... [5.171s] Masking low complexity seeds... [0.33s] Searching alignments... [57.004s] Deallocating memory... [0s] Deallocating buffers... [2.176s] Clearing query masking... [2s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [12.317s] Sorting trace points... [1.813s] Computing alignments... [51.871s] Deallocating buffers... [0.03s] Loading trace points... [0.989s] Sorting trace points... [1.059s] Computing alignments... [26.8s] Deallocating buffers... [0.012s] Loading trace points... [0.226s] Sorting trace points... [1.673s] Computing alignments... [52.891s] Deallocating buffers... [0.027s] Loading trace points... [0.167s] Sorting trace points... [1.753s] Computing alignments... [51.863s] Deallocating buffers... [0.025s] Loading trace points... [0.076s] Sorting trace points... [1.71s] Computing alignments... [51.951s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.976s] Computing alignments... [52.215s] Deallocating buffers... [0.12s] Loading trace points... [0.051s] Sorting trace points... [2.105s] Computing alignments... [52.083s] Deallocating buffers... [0.024s] Loading trace points... [0.947s] Sorting trace points... [1.701s] Computing alignments... [50.924s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [0.951s] Computing alignments... [24.753s] Deallocating buffers... [0.014s] Loading trace points... [0s] [445.57s] Deallocating reference... [0.056s] Loading reference sequences... [31.475s] Masking reference... [31.557s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.006s] Building reference histograms... [32.654s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.531s] Building query seed array... [2.996s] Computing hash join... [6.519s] Masking low complexity seeds... [0.346s] Searching alignments... [183.491s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.575s] Building query seed array... [4.081s] Computing hash join... [6.317s] Masking low complexity seeds... [0.333s] Searching alignments... [77.855s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.126s] Building query seed array... [3.693s] Computing hash join... [6.353s] Masking low complexity seeds... [0.324s] Searching alignments... [63.548s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.005s] Building query seed array... [3.217s] Computing hash join... [6.634s] Masking low complexity seeds... [0.333s] Searching alignments... [64.808s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.973s] Building query seed array... [2.978s] Computing hash join... [6.425s] Masking low complexity seeds... [0.33s] Searching alignments... [83.182s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.632s] Building query seed array... [3.286s] Computing hash join... [6.767s] Masking low complexity seeds... [0.37s] Searching alignments... [72.417s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.426s] Building query seed array... [3.323s] Computing hash join... [6.821s] Masking low complexity seeds... [0.332s] Searching alignments... [58.314s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.05s] Building query seed array... [2.857s] Computing hash join... [6.639s] Masking low complexity seeds... [0.307s] Searching alignments... [58.399s] Deallocating memory... [0s] Deallocating buffers... [1.123s] Clearing query masking... [2.166s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [12.486s] Sorting trace points... [2.115s] Computing alignments... [61.011s] Deallocating buffers... [0.043s] Loading trace points... [0.001s] Sorting trace points... [1.062s] Computing alignments... [31.391s] Deallocating buffers... [0.023s] Loading trace points... [0.276s] Sorting trace points... [1.085s] Computing alignments... [31.707s] Deallocating buffers... [0.019s] Loading trace points... [0.234s] Sorting trace points... [1.767s] Computing alignments... [61.603s] Deallocating buffers... [0.046s] Loading trace points... [0.197s] Sorting trace points... [2.096s] Computing alignments... [61.868s] Deallocating buffers... [0.112s] Loading trace points... [0.048s] Sorting trace points... [1.687s] Computing alignments... [60.139s] Deallocating buffers... [0.05s] Loading trace points... [0.122s] Sorting trace points... [0.997s] Computing alignments... [32.197s] Deallocating buffers... [0.026s] Loading trace points... [0.394s] Sorting trace points... [2.08s] Computing alignments... [60.698s] Deallocating buffers... [0.037s] Loading trace points... [0.11s] Sorting trace points... [1.519s] Computing alignments... [60.201s] Deallocating buffers... [0.045s] Loading trace points... [0s] Sorting trace points... [0.981s] Computing alignments... [29.447s] Deallocating buffers... [0.018s] Loading trace points... [0s] [520.275s] Deallocating reference... [0.068s] Loading reference sequences... [30.831s] Masking reference... [30.9s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.336s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.278s] Building query seed array... [3.007s] Computing hash join... [6.634s] Masking low complexity seeds... [0.647s] Searching alignments... [183.007s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.461s] Building query seed array... [4.009s] Computing hash join... [5.737s] Masking low complexity seeds... [0.363s] Searching alignments... [79.829s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.694s] Building query seed array... [3.645s] Computing hash join... [5.801s] Masking low complexity seeds... [0.359s] Searching alignments... [64.739s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.925s] Building query seed array... [3.306s] Computing hash join... [5.831s] Masking low complexity seeds... [0.361s] Searching alignments... [62.875s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.712s] Building query seed array... [2.933s] Computing hash join... [5.204s] Masking low complexity seeds... [0.315s] Searching alignments... [83.874s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.875s] Building query seed array... [3.354s] Computing hash join... [5.48s] Masking low complexity seeds... [0.345s] Searching alignments... [72.078s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.18s] Building query seed array... [3.501s] Computing hash join... [6.304s] Masking low complexity seeds... [0.374s] Searching alignments... [58.422s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.959s] Building query seed array... [2.819s] Computing hash join... [5.418s] Masking low complexity seeds... [0.315s] Searching alignments... [57.885s] Deallocating memory... [0s] Deallocating buffers... [2.364s] Clearing query masking... [1.967s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.798s] Sorting trace points... [1.507s] Computing alignments... [60.603s] Deallocating buffers... [0.09s] Loading trace points... [0.065s] Sorting trace points... [1.068s] Computing alignments... [31.141s] Deallocating buffers... [0.042s] Loading trace points... [0.094s] Sorting trace points... [1.565s] Computing alignments... [32.063s] Deallocating buffers... [0.045s] Loading trace points... [0.056s] Sorting trace points... [2.081s] Computing alignments... [61.659s] Deallocating buffers... [0.069s] Loading trace points... [0.034s] Sorting trace points... [0.824s] Computing alignments... [30.653s] Deallocating buffers... [0.027s] Loading trace points... [0.178s] Sorting trace points... [1.075s] Computing alignments... [32.846s] Deallocating buffers... [0.047s] Loading trace points... [0.052s] Sorting trace points... [2.003s] Computing alignments... [60.005s] Deallocating buffers... [0.064s] Loading trace points... [0.074s] Sorting trace points... [1.052s] Computing alignments... [31.821s] Deallocating buffers... [0.052s] Loading trace points... [0.19s] Sorting trace points... [1.074s] Computing alignments... [31.033s] Deallocating buffers... [0.042s] Loading trace points... [0.168s] Sorting trace points... [2.062s] Computing alignments... [60.194s] Deallocating buffers... [0.073s] Loading trace points... [0s] Sorting trace points... [2.065s] Computing alignments... [59.645s] Deallocating buffers... [0.209s] Loading trace points... [0s] [521.748s] Deallocating reference... [0.073s] Loading reference sequences... [36.016s] Masking reference... [30.915s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.791s] Building reference histograms... [33.07s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.407s] Building query seed array... [2.993s] Computing hash join... [6.668s] Masking low complexity seeds... [0.658s] Searching alignments... [186.973s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.642s] Building query seed array... [3.79s] Computing hash join... [6.64s] Masking low complexity seeds... [0.396s] Searching alignments... [80.437s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.607s] Building query seed array... [3.763s] Computing hash join... [6.208s] Masking low complexity seeds... [0.398s] Searching alignments... [64.477s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.573s] Building query seed array... [3.313s] Computing hash join... [5.686s] Masking low complexity seeds... [0.403s] Searching alignments... [64.284s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.433s] Building query seed array... [2.764s] Computing hash join... [6.107s] Masking low complexity seeds... [0.314s] Searching alignments... [80.611s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.708s] Building query seed array... [3.415s] Computing hash join... [6.116s] Masking low complexity seeds... [0.334s] Searching alignments... [72.501s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.237s] Building query seed array... [3.291s] Computing hash join... [5.339s] Masking low complexity seeds... [0.343s] Searching alignments... [57.388s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.576s] Building query seed array... [3.009s] Computing hash join... [5.781s] Masking low complexity seeds... [0.367s] Searching alignments... [57.146s] Deallocating memory... [0s] Deallocating buffers... [1.985s] Clearing query masking... [1.919s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.501s] Sorting trace points... [2.108s] Computing alignments... [58.185s] Deallocating buffers... [0.041s] Loading trace points... [0.132s] Sorting trace points... [0.832s] Computing alignments... [30.547s] Deallocating buffers... [0.02s] Loading trace points... [0.208s] Sorting trace points... [2.072s] Computing alignments... [59.867s] Deallocating buffers... [0.024s] Loading trace points... [0.152s] Sorting trace points... [2.026s] Computing alignments... [59.446s] Deallocating buffers... [0.298s] Loading trace points... [0.132s] Sorting trace points... [2.046s] Computing alignments... [59.312s] Deallocating buffers... [0.035s] Loading trace points... [0.119s] Sorting trace points... [2.036s] Computing alignments... [59.945s] Deallocating buffers... [0.361s] Loading trace points... [0.117s] Sorting trace points... [1.97s] Computing alignments... [58.66s] Deallocating buffers... [0.049s] Loading trace points... [0.075s] Sorting trace points... [2.244s] Computing alignments... [58.698s] Deallocating buffers... [0.291s] Loading trace points... [0s] Sorting trace points... [0.98s] Computing alignments... [28.364s] Deallocating buffers... [0.018s] Loading trace points... [0s] [503.129s] Deallocating reference... [0.07s] Loading reference sequences... [23.477s] Masking reference... [25.793s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.601s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.288s] Building query seed array... [3.008s] Computing hash join... [4.84s] Masking low complexity seeds... [0.31s] Searching alignments... [145.939s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.097s] Building query seed array... [3.925s] Computing hash join... [5.178s] Masking low complexity seeds... [0.341s] Searching alignments... [63.359s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.576s] Building query seed array... [3.738s] Computing hash join... [4.525s] Masking low complexity seeds... [0.31s] Searching alignments... [52.857s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.447s] Building query seed array... [3.399s] Computing hash join... [4.701s] Masking low complexity seeds... [0.304s] Searching alignments... [52.019s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.517s] Building query seed array... [2.875s] Computing hash join... [4.286s] Masking low complexity seeds... [0.281s] Searching alignments... [63.421s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.935s] Building query seed array... [3.172s] Computing hash join... [4.238s] Masking low complexity seeds... [0.277s] Searching alignments... [60.173s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.965s] Building query seed array... [3.553s] Computing hash join... [4.454s] Masking low complexity seeds... [0.28s] Searching alignments... [46.955s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.328s] Building query seed array... [2.997s] Computing hash join... [4.705s] Masking low complexity seeds... [0.394s] Searching alignments... [48.122s] Deallocating memory... [0s] Deallocating buffers... [0.868s] Clearing query masking... [2.123s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.252s] Sorting trace points... [1.48s] Computing alignments... [45.975s] Deallocating buffers... [0.032s] Loading trace points... [0.072s] Sorting trace points... [1.776s] Computing alignments... [47.41s] Deallocating buffers... [0.26s] Loading trace points... [0.124s] Sorting trace points... [1.718s] Computing alignments... [46.323s] Deallocating buffers... [0.024s] Loading trace points... [0.172s] Sorting trace points... [1.726s] Computing alignments... [47.104s] Deallocating buffers... [0.034s] Loading trace points... [0.163s] Sorting trace points... [1.518s] Computing alignments... [45.682s] Deallocating buffers... [0.03s] Loading trace points... [0.158s] Sorting trace points... [1.73s] Computing alignments... [46.758s] Deallocating buffers... [0.033s] Loading trace points... [0.107s] Sorting trace points... [1.517s] Computing alignments... [44.886s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.457s] Computing alignments... [45.371s] Deallocating buffers... [0.032s] Loading trace points... [0s] [394.061s] Deallocating reference... [0.07s] Loading reference sequences... [0.128s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1775.62s] [1775.62s] Deallocating queries... [0.093s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.786s] [3.51s] Closing the database... [0s] Cleaning up... [0s] Total time = 21609.3s Reported 1644583000 pairwise alignments, 1644583000 HSPs. 4963230 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-07.trimmed.R2.fastq.gz complete: CH05-07.trimmed.R2.blastx.meganized.daa Now MEGANizing CH05-07.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-07.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (263.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.9s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2,908.3s) Total reads: 4,963,230 With hits: 4,963,230 Alignments: 1,400,113,427 Assig. Taxonomy: 2,206,699 Assig. SEED: 72,827 Assig. EGGNOG: 22,072 Assig. GTDB: 154,403 Assig. EC: 297,272 Assig. INTERPRO2GO: 913,577 MinSupport set to: 2481 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 4,528 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7.9s) Min-supp. changes: 2,983 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.7s) Binning reads Syncing 100% (0.2s) Class. Taxonomy: 160 Class. SEED: 483 Class. EGGNOG: 1,552 Class. GTDB: 40 Class. EC: 2,208 Class. INTERPRO2GO: 8,581 Total time: 3,195s Peak memory: 37.8 of 195.3G MEGANization of CH05-07.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-09.trimmed.R1.fastq.gz... 04597236430dbab6e15d13cd315d0851 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-09.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-09.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.329s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.753s] Opening the output file... [0s] Loading query sequences... [112.89s] Masking queries... [29.309s] Algorithm: Double-indexed Building query histograms... [22.748s] Loading reference sequences... [31.187s] Masking reference... [31.081s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.537s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.692s] Building query seed array... [2.596s] Computing hash join... [5.895s] Masking low complexity seeds... [0.222s] Searching alignments... [752.669s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.56s] Building query seed array... [2.816s] Computing hash join... [5.851s] Masking low complexity seeds... [0.214s] Searching alignments... [333.291s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.368s] Building query seed array... [3.041s] Computing hash join... [5.772s] Masking low complexity seeds... [0.216s] Searching alignments... [237.844s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.19s] Building query seed array... [2.476s] Computing hash join... [5.992s] Masking low complexity seeds... [0.236s] Searching alignments... [249.356s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.058s] Building query seed array... [2.326s] Computing hash join... [5.619s] Masking low complexity seeds... [0.217s] Searching alignments... [350.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.245s] Building query seed array... [2.666s] Computing hash join... [5.714s] Masking low complexity seeds... [0.207s] Searching alignments... [274.51s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.374s] Building query seed array... [2.767s] Computing hash join... [5.829s] Masking low complexity seeds... [0.219s] Searching alignments... [200.973s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.85s] Building query seed array... [2.344s] Computing hash join... [5.837s] Masking low complexity seeds... [0.206s] Searching alignments... [204.492s] Deallocating memory... [0s] Deallocating buffers... [0.15s] Clearing query masking... [1.894s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.871s] Sorting trace points... [3.345s] Computing alignments... [87.261s] Deallocating buffers... [0.04s] Loading trace points... [0.061s] Sorting trace points... [3.986s] Computing alignments... [88.482s] Deallocating buffers... [0.688s] Loading trace points... [0.082s] Sorting trace points... [3.307s] Computing alignments... [89.103s] Deallocating buffers... [0.05s] Loading trace points... [0.095s] Sorting trace points... [4.052s] Computing alignments... [92.934s] Deallocating buffers... [0.469s] Loading trace points... [0.052s] Sorting trace points... [3.292s] Computing alignments... [88.469s] Deallocating buffers... [0.152s] Loading trace points... [0.054s] Sorting trace points... [4.097s] Computing alignments... [88.791s] Deallocating buffers... [0.529s] Loading trace points... [0.051s] Sorting trace points... [3.498s] Computing alignments... [89.199s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [3.574s] Computing alignments... [93.438s] Deallocating buffers... [0.311s] Loading trace points... [0.099s] Sorting trace points... [2.561s] Computing alignments... [89.873s] Deallocating buffers... [0.049s] Loading trace points... [0.053s] Sorting trace points... [3.156s] Computing alignments... [90.432s] Deallocating buffers... [0.421s] Loading trace points... [0.077s] Sorting trace points... [2.595s] Computing alignments... [91.346s] Deallocating buffers... [0.045s] Loading trace points... [0.055s] Sorting trace points... [4.108s] Computing alignments... [92.33s] Deallocating buffers... [0.688s] Loading trace points... [0.062s] Sorting trace points... [2.596s] Computing alignments... [89.107s] Deallocating buffers... [0.044s] Loading trace points... [0.097s] Sorting trace points... [3.758s] Computing alignments... [90.979s] Deallocating buffers... [0.204s] Loading trace points... [0.093s] Sorting trace points... [2.928s] Computing alignments... [89.79s] Deallocating buffers... [0.061s] Loading trace points... [0s] Sorting trace points... [3.704s] Computing alignments... [90.974s] Deallocating buffers... [0.527s] Loading trace points... [0s] [1519.3s] Deallocating reference... [0.063s] Loading reference sequences... [29.247s] Masking reference... [30.968s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.661s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.462s] Building query seed array... [2.581s] Computing hash join... [5.616s] Masking low complexity seeds... [0.214s] Searching alignments... [743.024s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.373s] Building query seed array... [3.097s] Computing hash join... [5.37s] Masking low complexity seeds... [0.207s] Searching alignments... [331.255s] Deallocating memory... [0.004s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.603s] Building query seed array... [3.254s] Computing hash join... [5.484s] Masking low complexity seeds... [0.218s] Searching alignments... [238.721s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.714s] Building query seed array... [2.592s] Computing hash join... [5.682s] Masking low complexity seeds... [0.257s] Searching alignments... [247.666s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.682s] Building query seed array... [2.408s] Computing hash join... [5.467s] Masking low complexity seeds... [0.206s] Searching alignments... [351.068s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.274s] Building query seed array... [2.695s] Computing hash join... [5.527s] Masking low complexity seeds... [0.205s] Searching alignments... [269.244s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.403s] Building query seed array... [2.935s] Computing hash join... [5.467s] Masking low complexity seeds... [0.202s] Searching alignments... [198.568s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.399s] Building query seed array... [2.527s] Computing hash join... [5.436s] Masking low complexity seeds... [0.204s] Searching alignments... [205.44s] Deallocating memory... [0s] Deallocating buffers... [0.558s] Clearing query masking... [1.742s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.051s] Sorting trace points... [3.443s] Computing alignments... [94.402s] Deallocating buffers... [0.178s] Loading trace points... [0.003s] Sorting trace points... [3.955s] Computing alignments... [95.803s] Deallocating buffers... [0.526s] Loading trace points... [0.068s] Sorting trace points... [3.683s] Computing alignments... [94.753s] Deallocating buffers... [0.366s] Loading trace points... [0.062s] Sorting trace points... [3.757s] Computing alignments... [99.281s] Deallocating buffers... [0.066s] Loading trace points... [0.107s] Sorting trace points... [2.572s] Computing alignments... [94.563s] Deallocating buffers... [0.138s] Loading trace points... [0.064s] Sorting trace points... [3.237s] Computing alignments... [95.385s] Deallocating buffers... [0.466s] Loading trace points... [0.051s] Sorting trace points... [2.542s] Computing alignments... [94.909s] Deallocating buffers... [0.119s] Loading trace points... [0.045s] Sorting trace points... [4.021s] Computing alignments... [100.024s] Deallocating buffers... [0.561s] Loading trace points... [0.053s] Sorting trace points... [3.799s] Computing alignments... [95.646s] Deallocating buffers... [0.437s] Loading trace points... [0.079s] Sorting trace points... [3.47s] Computing alignments... [96.003s] Deallocating buffers... [0.051s] Loading trace points... [0.047s] Sorting trace points... [2.523s] Computing alignments... [97.834s] Deallocating buffers... [0.048s] Loading trace points... [0.061s] Sorting trace points... [3.709s] Computing alignments... [98.503s] Deallocating buffers... [0.201s] Loading trace points... [0.002s] Sorting trace points... [3.845s] Computing alignments... [95.783s] Deallocating buffers... [0.424s] Loading trace points... [0.067s] Sorting trace points... [2.663s] Computing alignments... [96.827s] Deallocating buffers... [0.084s] Loading trace points... [0.1s] Sorting trace points... [3.966s] Computing alignments... [96.785s] Deallocating buffers... [0.648s] Loading trace points... [0s] Sorting trace points... [2.845s] Computing alignments... [98.523s] Deallocating buffers... [0.3s] Loading trace points... [0s] [1621.66s] Deallocating reference... [0.065s] Loading reference sequences... [30.369s] Masking reference... [30.857s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.794s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.546s] Building query seed array... [2.595s] Computing hash join... [6.262s] Masking low complexity seeds... [0.224s] Searching alignments... [751.402s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.783s] Building query seed array... [2.954s] Computing hash join... [6.297s] Masking low complexity seeds... [0.223s] Searching alignments... [335.53s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.215s] Building query seed array... [2.958s] Computing hash join... [6.387s] Masking low complexity seeds... [0.229s] Searching alignments... [240.657s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.964s] Building query seed array... [2.453s] Computing hash join... [6.163s] Masking low complexity seeds... [0.211s] Searching alignments... [247.376s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.087s] Building query seed array... [2.267s] Computing hash join... [6.309s] Masking low complexity seeds... [0.212s] Searching alignments... [358.208s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.199s] Building query seed array... [2.606s] Computing hash join... [6.19s] Masking low complexity seeds... [0.219s] Searching alignments... [268.938s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.083s] Building query seed array... [2.782s] Computing hash join... [6.173s] Masking low complexity seeds... [0.221s] Searching alignments... [200.791s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.964s] Building query seed array... [2.325s] Computing hash join... [6.084s] Masking low complexity seeds... [0.206s] Searching alignments... [201.471s] Deallocating memory... [0s] Deallocating buffers... [0.165s] Clearing query masking... [1.933s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.936s] Sorting trace points... [3.3s] Computing alignments... [92.574s] Deallocating buffers... [0.06s] Loading trace points... [0.077s] Sorting trace points... [2.982s] Computing alignments... [93.525s] Deallocating buffers... [0.043s] Loading trace points... [0s] Sorting trace points... [3.529s] Computing alignments... [94.133s] Deallocating buffers... [0.446s] Loading trace points... [0.089s] Sorting trace points... [3.991s] Computing alignments... [97.312s] Deallocating buffers... [0.428s] Loading trace points... [0.052s] Sorting trace points... [3.452s] Computing alignments... [93.952s] Deallocating buffers... [0.076s] Loading trace points... [0.098s] Sorting trace points... [3.426s] Computing alignments... [93.816s] Deallocating buffers... [0.339s] Loading trace points... [0.116s] Sorting trace points... [3.383s] Computing alignments... [93.582s] Deallocating buffers... [0.063s] Loading trace points... [0.182s] Sorting trace points... [3.971s] Computing alignments... [97.532s] Deallocating buffers... [0.403s] Loading trace points... [0.059s] Sorting trace points... [3.45s] Computing alignments... [94.057s] Deallocating buffers... [0.308s] Loading trace points... [0.081s] Sorting trace points... [3.55s] Computing alignments... [93.929s] Deallocating buffers... [0.261s] Loading trace points... [0.118s] Sorting trace points... [2.539s] Computing alignments... [95.962s] Deallocating buffers... [0.068s] Loading trace points... [0.055s] Sorting trace points... [3.396s] Computing alignments... [96.509s] Deallocating buffers... [0.499s] Loading trace points... [0.326s] Sorting trace points... [2.582s] Computing alignments... [94.161s] Deallocating buffers... [0.082s] Loading trace points... [0.083s] Sorting trace points... [2.689s] Computing alignments... [95.076s] Deallocating buffers... [0.069s] Loading trace points... [0.043s] Sorting trace points... [3.538s] Computing alignments... [94.206s] Deallocating buffers... [0.334s] Loading trace points... [0s] Sorting trace points... [4.08s] Computing alignments... [96.71s] Deallocating buffers... [0.71s] Loading trace points... [0s] [1593.65s] Deallocating reference... [0.066s] Loading reference sequences... [29.229s] Masking reference... [30.9s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.2s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.241s] Building query seed array... [2.74s] Computing hash join... [5.787s] Masking low complexity seeds... [0.22s] Searching alignments... [762.192s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.992s] Building query seed array... [3.026s] Computing hash join... [6.336s] Masking low complexity seeds... [0.238s] Searching alignments... [331.853s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.697s] Building query seed array... [3.055s] Computing hash join... [6.147s] Masking low complexity seeds... [0.231s] Searching alignments... [240.485s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.182s] Building query seed array... [2.593s] Computing hash join... [6.308s] Masking low complexity seeds... [0.234s] Searching alignments... [248.136s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.164s] Building query seed array... [2.414s] Computing hash join... [6.119s] Masking low complexity seeds... [0.212s] Searching alignments... [352.037s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.332s] Building query seed array... [2.716s] Computing hash join... [6.09s] Masking low complexity seeds... [0.21s] Searching alignments... [273.066s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.249s] Building query seed array... [2.838s] Computing hash join... [6.097s] Masking low complexity seeds... [0.203s] Searching alignments... [199.987s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.946s] Building query seed array... [2.407s] Computing hash join... [6.273s] Masking low complexity seeds... [0.214s] Searching alignments... [207.307s] Deallocating memory... [0s] Deallocating buffers... [0.31s] Clearing query masking... [1.946s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.937s] Sorting trace points... [3.4s] Computing alignments... [96.838s] Deallocating buffers... [0.059s] Loading trace points... [0.062s] Sorting trace points... [3.367s] Computing alignments... [97.856s] Deallocating buffers... [0.44s] Loading trace points... [0.001s] Sorting trace points... [3.68s] Computing alignments... [97.522s] Deallocating buffers... [0.38s] Loading trace points... [0.055s] Sorting trace points... [4.232s] Computing alignments... [101.848s] Deallocating buffers... [0.652s] Loading trace points... [0.05s] Sorting trace points... [3.398s] Computing alignments... [97.015s] Deallocating buffers... [0.074s] Loading trace points... [0.099s] Sorting trace points... [2.554s] Computing alignments... [98.876s] Deallocating buffers... [0.084s] Loading trace points... [0.758s] Sorting trace points... [3.659s] Computing alignments... [97.124s] Deallocating buffers... [0.23s] Loading trace points... [0.073s] Sorting trace points... [3.097s] Computing alignments... [102.772s] Deallocating buffers... [0.237s] Loading trace points... [0.077s] Sorting trace points... [3.106s] Computing alignments... [98.453s] Deallocating buffers... [0.411s] Loading trace points... [0.049s] Sorting trace points... [3.306s] Computing alignments... [98.227s] Deallocating buffers... [0.327s] Loading trace points... [0.066s] Sorting trace points... [3.544s] Computing alignments... [100.955s] Deallocating buffers... [0.144s] Loading trace points... [0.057s] Sorting trace points... [3.195s] Computing alignments... [101.086s] Deallocating buffers... [0.295s] Loading trace points... [0.055s] Sorting trace points... [3.922s] Computing alignments... [98.251s] Deallocating buffers... [0.638s] Loading trace points... [0.113s] Sorting trace points... [2.583s] Computing alignments... [99.422s] Deallocating buffers... [0.074s] Loading trace points... [0.041s] Sorting trace points... [3.338s] Computing alignments... [98.974s] Deallocating buffers... [0.472s] Loading trace points... [0s] Sorting trace points... [3.625s] Computing alignments... [101.21s] Deallocating buffers... [0.137s] Loading trace points... [0s] [1663.72s] Deallocating reference... [0.067s] Loading reference sequences... [241.128s] Masking reference... [30.878s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.939s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.994s] Building query seed array... [2.649s] Computing hash join... [5.585s] Masking low complexity seeds... [0.225s] Searching alignments... [743.539s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.292s] Building query seed array... [3.195s] Computing hash join... [5.442s] Masking low complexity seeds... [0.214s] Searching alignments... [337.021s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.706s] Building query seed array... [3.333s] Computing hash join... [5.986s] Masking low complexity seeds... [0.225s] Searching alignments... [238.942s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.105s] Building query seed array... [2.74s] Computing hash join... [5.547s] Masking low complexity seeds... [0.217s] Searching alignments... [249.997s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.396s] Building query seed array... [2.644s] Computing hash join... [5.533s] Masking low complexity seeds... [0.218s] Searching alignments... [356.277s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.3s] Building query seed array... [2.852s] Computing hash join... [5.588s] Masking low complexity seeds... [0.215s] Searching alignments... [272.717s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.185s] Building query seed array... [3.041s] Computing hash join... [5.437s] Masking low complexity seeds... [0.217s] Searching alignments... [202.071s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.016s] Building query seed array... [2.62s] Computing hash join... [5.396s] Masking low complexity seeds... [0.216s] Searching alignments... [203.85s] Deallocating memory... [0s] Deallocating buffers... [0.8s] Clearing query masking... [1.781s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.969s] Sorting trace points... [3.45s] Computing alignments... [102.851s] Deallocating buffers... [0.098s] Loading trace points... [0.068s] Sorting trace points... [3.104s] Computing alignments... [103.921s] Deallocating buffers... [0.375s] Loading trace points... [0.087s] Sorting trace points... [2.728s] Computing alignments... [103.436s] Deallocating buffers... [0.119s] Loading trace points... [0.08s] Sorting trace points... [2.868s] Computing alignments... [108.514s] Deallocating buffers... [0.326s] Loading trace points... [0.044s] Sorting trace points... [3.287s] Computing alignments... [104.196s] Deallocating buffers... [0.126s] Loading trace points... [0.072s] Sorting trace points... [3.072s] Computing alignments... [105.787s] Deallocating buffers... [0.193s] Loading trace points... [0.07s] Sorting trace points... [3.725s] Computing alignments... [104.637s] Deallocating buffers... [0.588s] Loading trace points... [0.055s] Sorting trace points... [3.979s] Computing alignments... [108.538s] Deallocating buffers... [0.486s] Loading trace points... [0.055s] Sorting trace points... [3.147s] Computing alignments... [104.688s] Deallocating buffers... [0.112s] Loading trace points... [0.051s] Sorting trace points... [3.099s] Computing alignments... [104.643s] Deallocating buffers... [0.232s] Loading trace points... [0.087s] Sorting trace points... [3.365s] Computing alignments... [107.408s] Deallocating buffers... [0.195s] Loading trace points... [0.001s] Sorting trace points... [3.604s] Computing alignments... [107.214s] Deallocating buffers... [0.309s] Loading trace points... [0.044s] Sorting trace points... [2.826s] Computing alignments... [104.053s] Deallocating buffers... [0.103s] Loading trace points... [0.072s] Sorting trace points... [3.829s] Computing alignments... [105.3s] Deallocating buffers... [0.49s] Loading trace points... [0.041s] Sorting trace points... [3.436s] Computing alignments... [105.233s] Deallocating buffers... [0.108s] Loading trace points... [0s] Sorting trace points... [3.864s] Computing alignments... [107.984s] Deallocating buffers... [0.476s] Loading trace points... [0s] [1764.02s] Deallocating reference... [0.067s] Loading reference sequences... [253.117s] Masking reference... [30.892s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.858s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.085s] Building query seed array... [2.592s] Computing hash join... [6.097s] Masking low complexity seeds... [0.229s] Searching alignments... [742.46s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.252s] Building query seed array... [2.845s] Computing hash join... [6.158s] Masking low complexity seeds... [0.214s] Searching alignments... [333.935s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.159s] Building query seed array... [3.022s] Computing hash join... [6.443s] Masking low complexity seeds... [0.224s] Searching alignments... [238.894s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.034s] Building query seed array... [2.454s] Computing hash join... [6.121s] Masking low complexity seeds... [0.218s] Searching alignments... [245.887s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.082s] Building query seed array... [2.394s] Computing hash join... [6.288s] Masking low complexity seeds... [0.211s] Searching alignments... [353.626s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.083s] Building query seed array... [2.616s] Computing hash join... [6.358s] Masking low complexity seeds... [0.223s] Searching alignments... [269.074s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.309s] Building query seed array... [2.77s] Computing hash join... [6.267s] Masking low complexity seeds... [0.214s] Searching alignments... [199.22s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.035s] Building query seed array... [2.322s] Computing hash join... [6.158s] Masking low complexity seeds... [0.201s] Searching alignments... [202.971s] Deallocating memory... [0s] Deallocating buffers... [0.13s] Clearing query masking... [1.875s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.862s] Sorting trace points... [3.467s] Computing alignments... [86.477s] Deallocating buffers... [0.063s] Loading trace points... [0.127s] Sorting trace points... [3.139s] Computing alignments... [87.575s] Deallocating buffers... [0.35s] Loading trace points... [0.057s] Sorting trace points... [3.979s] Computing alignments... [88.314s] Deallocating buffers... [0.628s] Loading trace points... [0.091s] Sorting trace points... [2.728s] Computing alignments... [92.377s] Deallocating buffers... [0.068s] Loading trace points... [0.055s] Sorting trace points... [3.401s] Computing alignments... [87.107s] Deallocating buffers... [0.196s] Loading trace points... [0.069s] Sorting trace points... [4.047s] Computing alignments... [87.666s] Deallocating buffers... [0.392s] Loading trace points... [0.059s] Sorting trace points... [3.361s] Computing alignments... [89.229s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [3.795s] Computing alignments... [93.113s] Deallocating buffers... [0.443s] Loading trace points... [0.108s] Sorting trace points... [3.758s] Computing alignments... [89.054s] Deallocating buffers... [0.295s] Loading trace points... [0.096s] Sorting trace points... [3.431s] Computing alignments... [89.556s] Deallocating buffers... [0.07s] Loading trace points... [0.098s] Sorting trace points... [3.365s] Computing alignments... [90.465s] Deallocating buffers... [0.287s] Loading trace points... [0.068s] Sorting trace points... [3.469s] Computing alignments... [91.625s] Deallocating buffers... [0.067s] Loading trace points... [0.087s] Sorting trace points... [3.295s] Computing alignments... [88.538s] Deallocating buffers... [0.298s] Loading trace points... [0.112s] Sorting trace points... [3.556s] Computing alignments... [89.976s] Deallocating buffers... [0.061s] Loading trace points... [0.405s] Sorting trace points... [3.212s] Computing alignments... [89.364s] Deallocating buffers... [0.294s] Loading trace points... [0s] Sorting trace points... [3.29s] Computing alignments... [90.594s] Deallocating buffers... [0.438s] Loading trace points... [0s] [1509.75s] Deallocating reference... [0.065s] Loading reference sequences... [29.246s] Masking reference... [30.867s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.866s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.19s] Building query seed array... [2.622s] Computing hash join... [5.654s] Masking low complexity seeds... [0.232s] Searching alignments... [747.212s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.755s] Building query seed array... [3.359s] Computing hash join... [5.661s] Masking low complexity seeds... [0.224s] Searching alignments... [335.148s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.453s] Building query seed array... [3.124s] Computing hash join... [5.982s] Masking low complexity seeds... [0.244s] Searching alignments... [241.153s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.229s] Building query seed array... [2.618s] Computing hash join... [5.601s] Masking low complexity seeds... [0.23s] Searching alignments... [245.661s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.777s] Building query seed array... [2.498s] Computing hash join... [5.493s] Masking low complexity seeds... [0.219s] Searching alignments... [346.458s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.487s] Building query seed array... [2.81s] Computing hash join... [5.64s] Masking low complexity seeds... [0.197s] Searching alignments... [266.217s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.708s] Building query seed array... [3.078s] Computing hash join... [5.567s] Masking low complexity seeds... [0.201s] Searching alignments... [199.501s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.32s] Building query seed array... [2.565s] Computing hash join... [5.662s] Masking low complexity seeds... [0.22s] Searching alignments... [208.982s] Deallocating memory... [0s] Deallocating buffers... [0.725s] Clearing query masking... [1.706s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.84s] Sorting trace points... [3.342s] Computing alignments... [84.932s] Deallocating buffers... [0.039s] Loading trace points... [0.081s] Sorting trace points... [3.416s] Computing alignments... [86.709s] Deallocating buffers... [0.08s] Loading trace points... [0.049s] Sorting trace points... [3.381s] Computing alignments... [87.811s] Deallocating buffers... [0.561s] Loading trace points... [0.077s] Sorting trace points... [2.62s] Computing alignments... [91.321s] Deallocating buffers... [0.068s] Loading trace points... [0.051s] Sorting trace points... [3.314s] Computing alignments... [86.631s] Deallocating buffers... [0.185s] Loading trace points... [0.054s] Sorting trace points... [3.8s] Computing alignments... [86.914s] Deallocating buffers... [0.287s] Loading trace points... [1.003s] Sorting trace points... [3.46s] Computing alignments... [88.226s] Deallocating buffers... [0.214s] Loading trace points... [0s] Sorting trace points... [3.382s] Computing alignments... [92.313s] Deallocating buffers... [0.13s] Loading trace points... [0.079s] Sorting trace points... [3.303s] Computing alignments... [89.128s] Deallocating buffers... [0.13s] Loading trace points... [0.056s] Sorting trace points... [3.216s] Computing alignments... [89.478s] Deallocating buffers... [0.559s] Loading trace points... [0.074s] Sorting trace points... [3.279s] Computing alignments... [89.709s] Deallocating buffers... [0.408s] Loading trace points... [0.058s] Sorting trace points... [2.982s] Computing alignments... [90.618s] Deallocating buffers... [0.26s] Loading trace points... [0.059s] Sorting trace points... [3.773s] Computing alignments... [87.527s] Deallocating buffers... [0.572s] Loading trace points... [0.08s] Sorting trace points... [3.37s] Computing alignments... [89.257s] Deallocating buffers... [0.061s] Loading trace points... [0.056s] Sorting trace points... [3.912s] Computing alignments... [88.355s] Deallocating buffers... [0.511s] Loading trace points... [0s] Sorting trace points... [2.835s] Computing alignments... [89.38s] Deallocating buffers... [0.049s] Loading trace points... [0s] [1494.56s] Deallocating reference... [0.074s] Loading reference sequences... [29.956s] Masking reference... [30.846s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.545s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.424s] Building query seed array... [2.757s] Computing hash join... [5.889s] Masking low complexity seeds... [0.227s] Searching alignments... [744.893s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.366s] Building query seed array... [3.317s] Computing hash join... [5.684s] Masking low complexity seeds... [0.237s] Searching alignments... [331.24s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.57s] Building query seed array... [3.224s] Computing hash join... [5.548s] Masking low complexity seeds... [0.212s] Searching alignments... [241.522s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.371s] Building query seed array... [2.666s] Computing hash join... [5.126s] Masking low complexity seeds... [0.23s] Searching alignments... [245.285s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.275s] Building query seed array... [2.574s] Computing hash join... [5.565s] Masking low complexity seeds... [0.229s] Searching alignments... [348.035s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.656s] Building query seed array... [2.832s] Computing hash join... [5.293s] Masking low complexity seeds... [0.205s] Searching alignments... [271.569s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.806s] Building query seed array... [2.962s] Computing hash join... [5.895s] Masking low complexity seeds... [0.225s] Searching alignments... [200.217s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.167s] Building query seed array... [2.576s] Computing hash join... [5.624s] Masking low complexity seeds... [0.216s] Searching alignments... [204.56s] Deallocating memory... [0s] Deallocating buffers... [1.756s] Clearing query masking... [1.785s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [16.839s] Sorting trace points... [3.303s] Computing alignments... [82.765s] Deallocating buffers... [0.039s] Loading trace points... [0.07s] Sorting trace points... [4.102s] Computing alignments... [84.282s] Deallocating buffers... [0.404s] Loading trace points... [0.079s] Sorting trace points... [4.224s] Computing alignments... [84.865s] Deallocating buffers... [0.831s] Loading trace points... [0.061s] Sorting trace points... [2.546s] Computing alignments... [88.197s] Deallocating buffers... [0.047s] Loading trace points... [0.058s] Sorting trace points... [3.556s] Computing alignments... [84.204s] Deallocating buffers... [0.192s] Loading trace points... [0.093s] Sorting trace points... [3.888s] Computing alignments... [84.427s] Deallocating buffers... [0.372s] Loading trace points... [0.081s] Sorting trace points... [4.008s] Computing alignments... [85.166s] Deallocating buffers... [0.644s] Loading trace points... [0.06s] Sorting trace points... [3.344s] Computing alignments... [89.286s] Deallocating buffers... [0.076s] Loading trace points... [0.069s] Sorting trace points... [3.442s] Computing alignments... [85.852s] Deallocating buffers... [0.38s] Loading trace points... [0.088s] Sorting trace points... [3.679s] Computing alignments... [86.107s] Deallocating buffers... [0.115s] Loading trace points... [0.058s] Sorting trace points... [3.768s] Computing alignments... [86.494s] Deallocating buffers... [0.383s] Loading trace points... [0s] Sorting trace points... [4.344s] Computing alignments... [87.62s] Deallocating buffers... [0.877s] Loading trace points... [0.053s] Sorting trace points... [3.813s] Computing alignments... [84.852s] Deallocating buffers... [0.457s] Loading trace points... [0.064s] Sorting trace points... [3.398s] Computing alignments... [86.727s] Deallocating buffers... [0.05s] Loading trace points... [0.001s] Sorting trace points... [2.915s] Computing alignments... [86.351s] Deallocating buffers... [0.326s] Loading trace points... [0s] Sorting trace points... [4.044s] Computing alignments... [86.743s] Deallocating buffers... [0.791s] Loading trace points... [0s] [1456.84s] Deallocating reference... [0.066s] Loading reference sequences... [30.821s] Masking reference... [31.375s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.998s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.141s] Building query seed array... [2.51s] Computing hash join... [6.871s] Masking low complexity seeds... [0.365s] Searching alignments... [752.816s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.587s] Building query seed array... [3.326s] Computing hash join... [5.579s] Masking low complexity seeds... [0.214s] Searching alignments... [335.881s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.04s] Building query seed array... [3.306s] Computing hash join... [5.626s] Masking low complexity seeds... [0.211s] Searching alignments... [240.272s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.208s] Building query seed array... [2.771s] Computing hash join... [5.493s] Masking low complexity seeds... [0.263s] Searching alignments... [249.601s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.725s] Building query seed array... [2.553s] Computing hash join... [6.114s] Masking low complexity seeds... [0.241s] Searching alignments... [350.19s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.322s] Building query seed array... [2.818s] Computing hash join... [5.668s] Masking low complexity seeds... [0.222s] Searching alignments... [271.877s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.444s] Building query seed array... [3.027s] Computing hash join... [5.861s] Masking low complexity seeds... [0.245s] Searching alignments... [200.673s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.819s] Building query seed array... [2.465s] Computing hash join... [5.715s] Masking low complexity seeds... [0.216s] Searching alignments... [207.098s] Deallocating memory... [0s] Deallocating buffers... [2.438s] Clearing query masking... [1.784s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [17.002s] Sorting trace points... [3.291s] Computing alignments... [99.61s] Deallocating buffers... [0.136s] Loading trace points... [0.137s] Sorting trace points... [3.513s] Computing alignments... [101.379s] Deallocating buffers... [0.436s] Loading trace points... [0.793s] Sorting trace points... [2.944s] Computing alignments... [100.271s] Deallocating buffers... [0.428s] Loading trace points... [0.097s] Sorting trace points... [2.578s] Computing alignments... [103.994s] Deallocating buffers... [0.114s] Loading trace points... [0.094s] Sorting trace points... [3.274s] Computing alignments... [100.361s] Deallocating buffers... [0.274s] Loading trace points... [0.043s] Sorting trace points... [2.902s] Computing alignments... [101.068s] Deallocating buffers... [0.239s] Loading trace points... [0.041s] Sorting trace points... [3.805s] Computing alignments... [99.488s] Deallocating buffers... [0.715s] Loading trace points... [0.196s] Sorting trace points... [3.587s] Computing alignments... [104.825s] Deallocating buffers... [0.099s] Loading trace points... [0.09s] Sorting trace points... [3.371s] Computing alignments... [100.823s] Deallocating buffers... [0.407s] Loading trace points... [0.093s] Sorting trace points... [3.337s] Computing alignments... [100.982s] Deallocating buffers... [0.607s] Loading trace points... [0.639s] Sorting trace points... [3.027s] Computing alignments... [102.648s] Deallocating buffers... [0.162s] Loading trace points... [0.08s] Sorting trace points... [4.166s] Computing alignments... [103.105s] Deallocating buffers... [0.759s] Loading trace points... [0.072s] Sorting trace points... [3.026s] Computing alignments... [100.783s] Deallocating buffers... [0.113s] Loading trace points... [0.117s] Sorting trace points... [3.127s] Computing alignments... [101.426s] Deallocating buffers... [0.4s] Loading trace points... [0.074s] Sorting trace points... [3.284s] Computing alignments... [101.089s] Deallocating buffers... [0.507s] Loading trace points... [0s] Sorting trace points... [3.18s] Computing alignments... [103.937s] Deallocating buffers... [0.435s] Loading trace points... [0s] [1703.77s] Deallocating reference... [0.076s] Loading reference sequences... [29.095s] Masking reference... [30.861s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.923s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.427s] Building query seed array... [2.647s] Computing hash join... [6.36s] Masking low complexity seeds... [0.311s] Searching alignments... [749.037s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.656s] Building query seed array... [3.1s] Computing hash join... [6.224s] Masking low complexity seeds... [0.216s] Searching alignments... [335.041s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.632s] Building query seed array... [3.135s] Computing hash join... [6.389s] Masking low complexity seeds... [0.22s] Searching alignments... [238.711s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.37s] Building query seed array... [2.701s] Computing hash join... [6.281s] Masking low complexity seeds... [0.216s] Searching alignments... [248.782s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.244s] Building query seed array... [2.432s] Computing hash join... [6.16s] Masking low complexity seeds... [0.205s] Searching alignments... [355.826s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.959s] Building query seed array... [2.686s] Computing hash join... [6.178s] Masking low complexity seeds... [0.212s] Searching alignments... [275.619s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.109s] Building query seed array... [2.92s] Computing hash join... [6.277s] Masking low complexity seeds... [0.216s] Searching alignments... [201.364s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.084s] Building query seed array... [2.486s] Computing hash join... [6.18s] Masking low complexity seeds... [0.207s] Searching alignments... [203.363s] Deallocating memory... [0s] Deallocating buffers... [0.499s] Clearing query masking... [1.915s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.384s] Sorting trace points... [3.252s] Computing alignments... [80.302s] Deallocating buffers... [0.047s] Loading trace points... [0.079s] Sorting trace points... [3.44s] Computing alignments... [81.845s] Deallocating buffers... [0.104s] Loading trace points... [0.065s] Sorting trace points... [3.405s] Computing alignments... [83.101s] Deallocating buffers... [0.184s] Loading trace points... [0.066s] Sorting trace points... [4.146s] Computing alignments... [86.458s] Deallocating buffers... [0.646s] Loading trace points... [0.079s] Sorting trace points... [3.33s] Computing alignments... [82.175s] Deallocating buffers... [0.05s] Loading trace points... [0.063s] Sorting trace points... [3.98s] Computing alignments... [83.119s] Deallocating buffers... [0.566s] Loading trace points... [0.057s] Sorting trace points... [4.262s] Computing alignments... [83.146s] Deallocating buffers... [0.733s] Loading trace points... [0.076s] Sorting trace points... [3.534s] Computing alignments... [86.334s] Deallocating buffers... [0.05s] Loading trace points... [0.063s] Sorting trace points... [3.996s] Computing alignments... [83.413s] Deallocating buffers... [0.638s] Loading trace points... [0.108s] Sorting trace points... [3.369s] Computing alignments... [83.966s] Deallocating buffers... [0.05s] Loading trace points... [0.088s] Sorting trace points... [4.064s] Computing alignments... [84.756s] Deallocating buffers... [0.445s] Loading trace points... [0.063s] Sorting trace points... [3.57s] Computing alignments... [85.557s] Deallocating buffers... [0.042s] Loading trace points... [0.066s] Sorting trace points... [2.957s] Computing alignments... [83.208s] Deallocating buffers... [0.223s] Loading trace points... [0.097s] Sorting trace points... [3.457s] Computing alignments... [84.524s] Deallocating buffers... [0.163s] Loading trace points... [0.045s] Sorting trace points... [2.466s] Computing alignments... [83.842s] Deallocating buffers... [0.105s] Loading trace points... [0s] Sorting trace points... [3.472s] Computing alignments... [84.027s] Deallocating buffers... [0.171s] Loading trace points... [0s] [1419.27s] Deallocating reference... [0.071s] Loading reference sequences... [29.144s] Masking reference... [32.131s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.933s] Allocating buffers... [0.001s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.357s] Building query seed array... [2.575s] Computing hash join... [6.361s] Masking low complexity seeds... [0.229s] Searching alignments... [747.464s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.201s] Building query seed array... [3.282s] Computing hash join... [6.201s] Masking low complexity seeds... [0.214s] Searching alignments... [334.729s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.158s] Building query seed array... [3.157s] Computing hash join... [6.287s] Masking low complexity seeds... [0.218s] Searching alignments... [239.124s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.853s] Building query seed array... [2.684s] Computing hash join... [6.41s] Masking low complexity seeds... [0.225s] Searching alignments... [247.57s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.807s] Building query seed array... [2.411s] Computing hash join... [6.283s] Masking low complexity seeds... [0.223s] Searching alignments... [355.718s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.197s] Building query seed array... [2.774s] Computing hash join... [6.261s] Masking low complexity seeds... [0.216s] Searching alignments... [276.559s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.236s] Building query seed array... [2.853s] Computing hash join... [6.087s] Masking low complexity seeds... [0.223s] Searching alignments... [201.396s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.506s] Building query seed array... [2.513s] Computing hash join... [6.227s] Masking low complexity seeds... [0.212s] Searching alignments... [201.616s] Deallocating memory... [0.009s] Deallocating buffers... [0.604s] Clearing query masking... [1.938s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [17.074s] Sorting trace points... [3.419s] Computing alignments... [100.828s] Deallocating buffers... [0.064s] Loading trace points... [0.061s] Sorting trace points... [2.745s] Computing alignments... [103.444s] Deallocating buffers... [0.31s] Loading trace points... [0.087s] Sorting trace points... [3.325s] Computing alignments... [103.256s] Deallocating buffers... [0.37s] Loading trace points... [0.082s] Sorting trace points... [2.712s] Computing alignments... [107.546s] Deallocating buffers... [0.074s] Loading trace points... [0.056s] Sorting trace points... [2.96s] Computing alignments... [101.836s] Deallocating buffers... [0.243s] Loading trace points... [0.096s] Sorting trace points... [3.589s] Computing alignments... [104.172s] Deallocating buffers... [0.341s] Loading trace points... [0.107s] Sorting trace points... [3.251s] Computing alignments... [102.58s] Deallocating buffers... [0.268s] Loading trace points... [0.094s] Sorting trace points... [3.335s] Computing alignments... [108.186s] Deallocating buffers... [0.458s] Loading trace points... [0.059s] Sorting trace points... [3.873s] Computing alignments... [103.521s] Deallocating buffers... [0.495s] Loading trace points... [0.081s] Sorting trace points... [3.003s] Computing alignments... [103.628s] Deallocating buffers... [0.315s] Loading trace points... [0.073s] Sorting trace points... [2.96s] Computing alignments... [105.574s] Deallocating buffers... [0.162s] Loading trace points... [0.124s] Sorting trace points... [3.993s] Computing alignments... [106.712s] Deallocating buffers... [0.595s] Loading trace points... [0.1s] Sorting trace points... [3.127s] Computing alignments... [104.036s] Deallocating buffers... [0.418s] Loading trace points... [0.057s] Sorting trace points... [3.433s] Computing alignments... [103.951s] Deallocating buffers... [0.074s] Loading trace points... [0.003s] Sorting trace points... [3.544s] Computing alignments... [103.682s] Deallocating buffers... [0.432s] Loading trace points... [0s] Sorting trace points... [4.118s] Computing alignments... [106.309s] Deallocating buffers... [0.438s] Loading trace points... [0s] [1746.08s] Deallocating reference... [0.063s] Loading reference sequences... [250.378s] Masking reference... [31.155s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.7s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.008s] Building query seed array... [2.558s] Computing hash join... [5.788s] Masking low complexity seeds... [0.223s] Searching alignments... [749.545s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.469s] Building query seed array... [3.434s] Computing hash join... [6.136s] Masking low complexity seeds... [0.226s] Searching alignments... [335.809s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.522s] Building query seed array... [3.404s] Computing hash join... [6.144s] Masking low complexity seeds... [0.216s] Searching alignments... [239.102s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.913s] Building query seed array... [2.722s] Computing hash join... [6.067s] Masking low complexity seeds... [0.22s] Searching alignments... [252.36s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.652s] Building query seed array... [2.528s] Computing hash join... [5.918s] Masking low complexity seeds... [0.207s] Searching alignments... [359.102s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.271s] Building query seed array... [2.83s] Computing hash join... [6.199s] Masking low complexity seeds... [0.247s] Searching alignments... [271.211s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.537s] Building query seed array... [3.048s] Computing hash join... [6.407s] Masking low complexity seeds... [0.247s] Searching alignments... [202.02s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.811s] Building query seed array... [2.522s] Computing hash join... [6.263s] Masking low complexity seeds... [0.211s] Searching alignments... [204.806s] Deallocating memory... [0s] Deallocating buffers... [0.844s] Clearing query masking... [1.875s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.161s] Sorting trace points... [3.561s] Computing alignments... [101.151s] Deallocating buffers... [0.103s] Loading trace points... [0.107s] Sorting trace points... [3.395s] Computing alignments... [102.635s] Deallocating buffers... [0.518s] Loading trace points... [0.083s] Sorting trace points... [3.419s] Computing alignments... [101.379s] Deallocating buffers... [0.059s] Loading trace points... [0.085s] Sorting trace points... [2.928s] Computing alignments... [105.602s] Deallocating buffers... [0.327s] Loading trace points... [0.094s] Sorting trace points... [3.519s] Computing alignments... [101.457s] Deallocating buffers... [0.138s] Loading trace points... [0.077s] Sorting trace points... [4.308s] Computing alignments... [102.901s] Deallocating buffers... [0.561s] Loading trace points... [0.054s] Sorting trace points... [3.466s] Computing alignments... [101.464s] Deallocating buffers... [0.387s] Loading trace points... [0.041s] Sorting trace points... [3.676s] Computing alignments... [106.333s] Deallocating buffers... [0.107s] Loading trace points... [0.1s] Sorting trace points... [3.434s] Computing alignments... [102.099s] Deallocating buffers... [0.288s] Loading trace points... [0.001s] Sorting trace points... [4.023s] Computing alignments... [102.114s] Deallocating buffers... [0.21s] Loading trace points... [0.006s] Sorting trace points... [3.227s] Computing alignments... [104.545s] Deallocating buffers... [0.382s] Loading trace points... [0.102s] Sorting trace points... [3.216s] Computing alignments... [105.278s] Deallocating buffers... [0.519s] Loading trace points... [0.081s] Sorting trace points... [3.885s] Computing alignments... [102.534s] Deallocating buffers... [0.534s] Loading trace points... [0.001s] Sorting trace points... [3.231s] Computing alignments... [103.761s] Deallocating buffers... [0.284s] Loading trace points... [0.123s] Sorting trace points... [3.349s] Computing alignments... [102.785s] Deallocating buffers... [0.195s] Loading trace points... [0s] Sorting trace points... [3.856s] Computing alignments... [105.579s] Deallocating buffers... [0.439s] Loading trace points... [0s] [1731.43s] Deallocating reference... [0.069s] Loading reference sequences... [29.283s] Masking reference... [30.844s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.553s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.51s] Building query seed array... [2.634s] Computing hash join... [5.882s] Masking low complexity seeds... [0.231s] Searching alignments... [749.699s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.037s] Building query seed array... [3.218s] Computing hash join... [6.08s] Masking low complexity seeds... [0.216s] Searching alignments... [340.777s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.511s] Building query seed array... [3.283s] Computing hash join... [6.367s] Masking low complexity seeds... [0.225s] Searching alignments... [239.483s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.006s] Building query seed array... [2.728s] Computing hash join... [6.27s] Masking low complexity seeds... [0.235s] Searching alignments... [252.068s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.171s] Building query seed array... [2.457s] Computing hash join... [6.211s] Masking low complexity seeds... [0.263s] Searching alignments... [351.049s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.828s] Building query seed array... [2.697s] Computing hash join... [6.068s] Masking low complexity seeds... [0.204s] Searching alignments... [274.597s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.237s] Building query seed array... [2.986s] Computing hash join... [6.26s] Masking low complexity seeds... [0.244s] Searching alignments... [201.36s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.686s] Building query seed array... [2.501s] Computing hash join... [6.212s] Masking low complexity seeds... [0.218s] Searching alignments... [203.414s] Deallocating memory... [0s] Deallocating buffers... [0.623s] Clearing query masking... [1.812s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.103s] Sorting trace points... [3.133s] Computing alignments... [97.077s] Deallocating buffers... [0.07s] Loading trace points... [0.087s] Sorting trace points... [3.665s] Computing alignments... [98.663s] Deallocating buffers... [0.422s] Loading trace points... [0.046s] Sorting trace points... [3.437s] Computing alignments... [98.021s] Deallocating buffers... [0.04s] Loading trace points... [0.059s] Sorting trace points... [3.752s] Computing alignments... [102.459s] Deallocating buffers... [0.363s] Loading trace points... [0.062s] Sorting trace points... [3.474s] Computing alignments... [98.478s] Deallocating buffers... [0.164s] Loading trace points... [0.05s] Sorting trace points... [4.116s] Computing alignments... [98.447s] Deallocating buffers... [0.425s] Loading trace points... [0.04s] Sorting trace points... [2.908s] Computing alignments... [97.985s] Deallocating buffers... [0.073s] Loading trace points... [0.095s] Sorting trace points... [3.161s] Computing alignments... [102.518s] Deallocating buffers... [0.247s] Loading trace points... [0.076s] Sorting trace points... [3.728s] Computing alignments... [98.342s] Deallocating buffers... [0.325s] Loading trace points... [0.453s] Sorting trace points... [3.274s] Computing alignments... [98.541s] Deallocating buffers... [0.22s] Loading trace points... [0.076s] Sorting trace points... [2.965s] Computing alignments... [100.795s] Deallocating buffers... [0.42s] Loading trace points... [0.065s] Sorting trace points... [3.128s] Computing alignments... [101.541s] Deallocating buffers... [0.29s] Loading trace points... [0.061s] Sorting trace points... [4.115s] Computing alignments... [98.759s] Deallocating buffers... [0.755s] Loading trace points... [0.144s] Sorting trace points... [2.887s] Computing alignments... [99.857s] Deallocating buffers... [0.31s] Loading trace points... [0.058s] Sorting trace points... [3.657s] Computing alignments... [99.373s] Deallocating buffers... [0.242s] Loading trace points... [0s] Sorting trace points... [2.807s] Computing alignments... [101.572s] Deallocating buffers... [0.167s] Loading trace points... [0s] [1669.75s] Deallocating reference... [0.071s] Loading reference sequences... [24.13s] Masking reference... [25.026s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.005s] Building reference histograms... [26.161s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.37s] Building query seed array... [2.517s] Computing hash join... [4.237s] Masking low complexity seeds... [0.202s] Searching alignments... [600.861s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.95s] Building query seed array... [2.925s] Computing hash join... [4.745s] Masking low complexity seeds... [0.208s] Searching alignments... [270.917s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.639s] Building query seed array... [2.866s] Computing hash join... [4.699s] Masking low complexity seeds... [0.211s] Searching alignments... [193.236s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.213s] Building query seed array... [2.522s] Computing hash join... [4.224s] Masking low complexity seeds... [0.199s] Searching alignments... [199.489s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.247s] Building query seed array... [2.29s] Computing hash join... [4.145s] Masking low complexity seeds... [0.196s] Searching alignments... [278.202s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.93s] Building query seed array... [2.631s] Computing hash join... [4.595s] Masking low complexity seeds... [0.196s] Searching alignments... [219.572s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.588s] Building query seed array... [2.783s] Computing hash join... [4.179s] Masking low complexity seeds... [0.204s] Searching alignments... [162.56s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.35s] Building query seed array... [2.342s] Computing hash join... [4.175s] Masking low complexity seeds... [0.194s] Searching alignments... [161.676s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [1.758s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.814s] Sorting trace points... [2.802s] Computing alignments... [74.598s] Deallocating buffers... [0.064s] Loading trace points... [0.104s] Sorting trace points... [2.768s] Computing alignments... [75.414s] Deallocating buffers... [0.033s] Loading trace points... [0.05s] Sorting trace points... [2.711s] Computing alignments... [75.908s] Deallocating buffers... [0.045s] Loading trace points... [0.048s] Sorting trace points... [2.988s] Computing alignments... [79.049s] Deallocating buffers... [0.237s] Loading trace points... [0.068s] Sorting trace points... [2.673s] Computing alignments... [75.147s] Deallocating buffers... [0.067s] Loading trace points... [0.063s] Sorting trace points... [3.025s] Computing alignments... [76.354s] Deallocating buffers... [0.279s] Loading trace points... [0.05s] Sorting trace points... [2.607s] Computing alignments... [76.011s] Deallocating buffers... [0.142s] Loading trace points... [0.092s] Sorting trace points... [2.758s] Computing alignments... [79.928s] Deallocating buffers... [0.068s] Loading trace points... [0.096s] Sorting trace points... [2.28s] Computing alignments... [75.7s] Deallocating buffers... [0.052s] Loading trace points... [0.089s] Sorting trace points... [2.772s] Computing alignments... [75.791s] Deallocating buffers... [0.062s] Loading trace points... [0.057s] Sorting trace points... [2.737s] Computing alignments... [78.017s] Deallocating buffers... [0.181s] Loading trace points... [0.093s] Sorting trace points... [3.182s] Computing alignments... [78.488s] Deallocating buffers... [0.269s] Loading trace points... [0.054s] Sorting trace points... [2.724s] Computing alignments... [75.772s] Deallocating buffers... [0.039s] Loading trace points... [0.061s] Sorting trace points... [2.305s] Computing alignments... [76.841s] Deallocating buffers... [0.059s] Loading trace points... [0.067s] Sorting trace points... [2.7s] Computing alignments... [76.099s] Deallocating buffers... [0.064s] Loading trace points... [0s] Sorting trace points... [3.1s] Computing alignments... [78.05s] Deallocating buffers... [0.251s] Loading trace points... [0s] [1288.1s] Deallocating reference... [0.056s] Loading reference sequences... [0.078s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [5713.91s] [5713.91s] Deallocating queries... [0.091s] Loading query sequences... [0.027s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.862s] [3.673s] Closing the database... [0s] Cleaning up... [0s] Total time = 68220.7s Reported 6127161153 pairwise alignments, 6127161153 HSPs. 6539025 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-09.trimmed.R1.fastq.gz complete: CH05-09.trimmed.R1.blastx.meganized.daa Now MEGANizing CH05-09.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-09.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (312.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.9s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10,389.6s) Total reads: 6,539,025 With hits: 6,539,025 Alignments: 4,703,296,727 Assig. Taxonomy: 3,294,054 Assig. SEED: 87,604 Assig. EGGNOG: 22,252 Assig. GTDB: 199,935 Assig. EC: 550,333 Assig. INTERPRO2GO: 1,591,145 MinSupport set to: 3269 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,353 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (20.6s) Min-supp. changes: 3,342 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.8s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 160 Class. SEED: 477 Class. EGGNOG: 1,485 Class. GTDB: 45 Class. EC: 2,255 Class. INTERPRO2GO: 8,714 Total time: 10,740s Peak memory: 32.8 of 195.3G MEGANization of CH05-09.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-09.trimmed.R2.fastq.gz... f2974a7c13265d97c50c4553af697b83 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-09.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-09.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.326s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.736s] Opening the output file... [0s] Loading query sequences... [111.873s] Masking queries... [29.494s] Algorithm: Double-indexed Building query histograms... [24.589s] Loading reference sequences... [29.78s] Masking reference... [30.905s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.039s] Building reference histograms... [32.432s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.806s] Building query seed array... [2.601s] Computing hash join... [6.102s] Masking low complexity seeds... [0.222s] Searching alignments... [779.237s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.687s] Building query seed array... [3.256s] Computing hash join... [5.516s] Masking low complexity seeds... [0.214s] Searching alignments... [350.309s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.884s] Building query seed array... [3.191s] Computing hash join... [5.928s] Masking low complexity seeds... [0.211s] Searching alignments... [246.806s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.504s] Building query seed array... [2.839s] Computing hash join... [5.513s] Masking low complexity seeds... [0.226s] Searching alignments... [257.065s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.9s] Building query seed array... [2.384s] Computing hash join... [5.259s] Masking low complexity seeds... [0.228s] Searching alignments... [373.743s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.614s] Building query seed array... [2.759s] Computing hash join... [5.397s] Masking low complexity seeds... [0.222s] Searching alignments... [285.69s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.444s] Building query seed array... [2.935s] Computing hash join... [5.123s] Masking low complexity seeds... [0.238s] Searching alignments... [210.618s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.396s] Building query seed array... [2.577s] Computing hash join... [5.203s] Masking low complexity seeds... [0.211s] Searching alignments... [219.183s] Deallocating memory... [0s] Deallocating buffers... [0.93s] Clearing query masking... [1.744s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [17.556s] Sorting trace points... [3.532s] Computing alignments... [88.816s] Deallocating buffers... [0.117s] Loading trace points... [0.056s] Sorting trace points... [3.652s] Computing alignments... [90.525s] Deallocating buffers... [0.2s] Loading trace points... [0.043s] Sorting trace points... [3.958s] Computing alignments... [90.66s] Deallocating buffers... [0.598s] Loading trace points... [0.088s] Sorting trace points... [2.787s] Computing alignments... [94.008s] Deallocating buffers... [0.046s] Loading trace points... [0.079s] Sorting trace points... [2.715s] Computing alignments... [90.92s] Deallocating buffers... [0.111s] Loading trace points... [0.074s] Sorting trace points... [3.611s] Computing alignments... [91.545s] Deallocating buffers... [0.453s] Loading trace points... [0.002s] Sorting trace points... [3.877s] Computing alignments... [90.012s] Deallocating buffers... [0.381s] Loading trace points... [0.067s] Sorting trace points... [4.035s] Computing alignments... [93.204s] Deallocating buffers... [0.487s] Loading trace points... [0.142s] Sorting trace points... [4.152s] Computing alignments... [91.173s] Deallocating buffers... [0.377s] Loading trace points... [0.056s] Sorting trace points... [3.107s] Computing alignments... [91.951s] Deallocating buffers... [0.227s] Loading trace points... [0.121s] Sorting trace points... [3.664s] Computing alignments... [93.599s] Deallocating buffers... [0.308s] Loading trace points... [0.063s] Sorting trace points... [3.96s] Computing alignments... [91.936s] Deallocating buffers... [0.462s] Loading trace points... [0.093s] Sorting trace points... [3.762s] Computing alignments... [89.943s] Deallocating buffers... [0.239s] Loading trace points... [0.082s] Sorting trace points... [3.925s] Computing alignments... [91.027s] Deallocating buffers... [0.238s] Loading trace points... [0.109s] Sorting trace points... [4.275s] Computing alignments... [90.195s] Deallocating buffers... [0.726s] Loading trace points... [0s] Sorting trace points... [2.585s] Computing alignments... [89.12s] Deallocating buffers... [0.046s] Loading trace points... [0s] [1539.99s] Deallocating reference... [0.056s] Loading reference sequences... [34.669s] Masking reference... [30.979s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.364s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.318s] Building query seed array... [2.649s] Computing hash join... [5.699s] Masking low complexity seeds... [0.23s] Searching alignments... [771.753s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.43s] Building query seed array... [3.613s] Computing hash join... [5.772s] Masking low complexity seeds... [0.217s] Searching alignments... [345.977s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.608s] Building query seed array... [3.118s] Computing hash join... [5.917s] Masking low complexity seeds... [0.224s] Searching alignments... [247.134s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.19s] Building query seed array... [2.805s] Computing hash join... [5.351s] Masking low complexity seeds... [0.222s] Searching alignments... [250.575s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.362s] Building query seed array... [2.662s] Computing hash join... [4.98s] Masking low complexity seeds... [0.207s] Searching alignments... [372.235s] Deallocating memory... [0.002s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.025s] Building query seed array... [2.902s] Computing hash join... [5.632s] Masking low complexity seeds... [0.225s] Searching alignments... [279.406s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.462s] Building query seed array... [2.958s] Computing hash join... [5.045s] Masking low complexity seeds... [0.2s] Searching alignments... [203.347s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.522s] Building query seed array... [2.663s] Computing hash join... [5.438s] Masking low complexity seeds... [0.234s] Searching alignments... [212.002s] Deallocating memory... [0s] Deallocating buffers... [1.836s] Clearing query masking... [1.772s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [17.418s] Sorting trace points... [3.571s] Computing alignments... [94.316s] Deallocating buffers... [0.051s] Loading trace points... [0.048s] Sorting trace points... [4.124s] Computing alignments... [97.523s] Deallocating buffers... [0.857s] Loading trace points... [0.049s] Sorting trace points... [3.93s] Computing alignments... [97.504s] Deallocating buffers... [0.157s] Loading trace points... [0.057s] Sorting trace points... [4.406s] Computing alignments... [101.135s] Deallocating buffers... [0.888s] Loading trace points... [0.05s] Sorting trace points... [3.396s] Computing alignments... [98.953s] Deallocating buffers... [0.07s] Loading trace points... [0.05s] Sorting trace points... [3.544s] Computing alignments... [98.911s] Deallocating buffers... [0.449s] Loading trace points... [0.088s] Sorting trace points... [3.233s] Computing alignments... [96.983s] Deallocating buffers... [0.313s] Loading trace points... [0.103s] Sorting trace points... [3.622s] Computing alignments... [99.727s] Deallocating buffers... [0.135s] Loading trace points... [0.08s] Sorting trace points... [3.693s] Computing alignments... [98.007s] Deallocating buffers... [0.613s] Loading trace points... [0.062s] Sorting trace points... [3.045s] Computing alignments... [98.802s] Deallocating buffers... [0.108s] Loading trace points... [0.035s] Sorting trace points... [3.696s] Computing alignments... [100.368s] Deallocating buffers... [0.197s] Loading trace points... [0.079s] Sorting trace points... [4.088s] Computing alignments... [98.22s] Deallocating buffers... [0.725s] Loading trace points... [0.065s] Sorting trace points... [2.946s] Computing alignments... [97.079s] Deallocating buffers... [0.082s] Loading trace points... [0.607s] Sorting trace points... [3.229s] Computing alignments... [97.395s] Deallocating buffers... [0.304s] Loading trace points... [0.046s] Sorting trace points... [3.228s] Computing alignments... [96.843s] Deallocating buffers... [0.433s] Loading trace points... [0s] Sorting trace points... [3.353s] Computing alignments... [96.428s] Deallocating buffers... [0.139s] Loading trace points... [0s] [1649.81s] Deallocating reference... [0.061s] Loading reference sequences... [29.01s] Masking reference... [30.899s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.278s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.655s] Building query seed array... [2.672s] Computing hash join... [5.728s] Masking low complexity seeds... [0.228s] Searching alignments... [800.337s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.934s] Building query seed array... [3.485s] Computing hash join... [5.219s] Masking low complexity seeds... [0.207s] Searching alignments... [348.65s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.846s] Building query seed array... [3.352s] Computing hash join... [5.05s] Masking low complexity seeds... [0.219s] Searching alignments... [249.277s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.41s] Building query seed array... [2.686s] Computing hash join... [5.364s] Masking low complexity seeds... [0.221s] Searching alignments... [250.992s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.243s] Building query seed array... [2.493s] Computing hash join... [5.189s] Masking low complexity seeds... [0.212s] Searching alignments... [368.059s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.512s] Building query seed array... [2.912s] Computing hash join... [5.411s] Masking low complexity seeds... [0.21s] Searching alignments... [279.962s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.384s] Building query seed array... [2.954s] Computing hash join... [5.647s] Masking low complexity seeds... [0.2s] Searching alignments... [206.649s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.221s] Building query seed array... [2.593s] Computing hash join... [5.415s] Masking low complexity seeds... [0.207s] Searching alignments... [220.169s] Deallocating memory... [0s] Deallocating buffers... [1s] Clearing query masking... [1.896s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [18.331s] Sorting trace points... [3.301s] Computing alignments... [92.273s] Deallocating buffers... [0.05s] Loading trace points... [0.062s] Sorting trace points... [2.901s] Computing alignments... [95.852s] Deallocating buffers... [0.379s] Loading trace points... [0.076s] Sorting trace points... [3.511s] Computing alignments... [95.77s] Deallocating buffers... [0.381s] Loading trace points... [0.06s] Sorting trace points... [4.254s] Computing alignments... [98.995s] Deallocating buffers... [0.671s] Loading trace points... [0.079s] Sorting trace points... [3.467s] Computing alignments... [95.78s] Deallocating buffers... [0.062s] Loading trace points... [0.092s] Sorting trace points... [3.927s] Computing alignments... [97.361s] Deallocating buffers... [0.666s] Loading trace points... [0.073s] Sorting trace points... [3.642s] Computing alignments... [95.482s] Deallocating buffers... [0.121s] Loading trace points... [0.069s] Sorting trace points... [3.366s] Computing alignments... [98.121s] Deallocating buffers... [0.196s] Loading trace points... [0.072s] Sorting trace points... [3.359s] Computing alignments... [95.025s] Deallocating buffers... [0.55s] Loading trace points... [0.096s] Sorting trace points... [3.507s] Computing alignments... [96.148s] Deallocating buffers... [0.241s] Loading trace points... [0.065s] Sorting trace points... [3.505s] Computing alignments... [98.103s] Deallocating buffers... [0.211s] Loading trace points... [0.086s] Sorting trace points... [4.001s] Computing alignments... [95.167s] Deallocating buffers... [0.366s] Loading trace points... [0.082s] Sorting trace points... [3.394s] Computing alignments... [94.765s] Deallocating buffers... [0.099s] Loading trace points... [0.046s] Sorting trace points... [3.306s] Computing alignments... [95.278s] Deallocating buffers... [0.239s] Loading trace points... [0.071s] Sorting trace points... [2.948s] Computing alignments... [94.594s] Deallocating buffers... [0.352s] Loading trace points... [0s] Sorting trace points... [2.422s] Computing alignments... [94.024s] Deallocating buffers... [0.045s] Loading trace points... [0s] [1611.67s] Deallocating reference... [0.058s] Loading reference sequences... [29.334s] Masking reference... [30.877s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.416s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.421s] Building query seed array... [2.664s] Computing hash join... [5.722s] Masking low complexity seeds... [0.219s] Searching alignments... [785.839s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.099s] Building query seed array... [3.513s] Computing hash join... [5.452s] Masking low complexity seeds... [0.238s] Searching alignments... [347.983s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.967s] Building query seed array... [3.202s] Computing hash join... [5.691s] Masking low complexity seeds... [0.272s] Searching alignments... [252.531s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.611s] Building query seed array... [2.753s] Computing hash join... [5.065s] Masking low complexity seeds... [0.211s] Searching alignments... [255.22s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.641s] Building query seed array... [2.497s] Computing hash join... [5.43s] Masking low complexity seeds... [0.21s] Searching alignments... [369.561s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.406s] Building query seed array... [2.87s] Computing hash join... [5.746s] Masking low complexity seeds... [0.217s] Searching alignments... [283.705s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.524s] Building query seed array... [2.948s] Computing hash join... [5.861s] Masking low complexity seeds... [0.205s] Searching alignments... [207.587s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.784s] Building query seed array... [2.639s] Computing hash join... [5.802s] Masking low complexity seeds... [0.206s] Searching alignments... [218.271s] Deallocating memory... [0s] Deallocating buffers... [1.589s] Clearing query masking... [1.719s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.446s] Sorting trace points... [3.563s] Computing alignments... [95.056s] Deallocating buffers... [0.041s] Loading trace points... [0.069s] Sorting trace points... [3.673s] Computing alignments... [99.461s] Deallocating buffers... [0.63s] Loading trace points... [0.823s] Sorting trace points... [3.382s] Computing alignments... [99.087s] Deallocating buffers... [0.087s] Loading trace points... [0.062s] Sorting trace points... [3.322s] Computing alignments... [103.751s] Deallocating buffers... [0.4s] Loading trace points... [0.08s] Sorting trace points... [2.645s] Computing alignments... [100.995s] Deallocating buffers... [0.118s] Loading trace points... [0.064s] Sorting trace points... [3.289s] Computing alignments... [101.617s] Deallocating buffers... [0.237s] Loading trace points... [0.16s] Sorting trace points... [3.613s] Computing alignments... [99.524s] Deallocating buffers... [0.402s] Loading trace points... [0.048s] Sorting trace points... [3.826s] Computing alignments... [101.922s] Deallocating buffers... [0.334s] Loading trace points... [0.072s] Sorting trace points... [3.855s] Computing alignments... [99.635s] Deallocating buffers... [0.629s] Loading trace points... [0.076s] Sorting trace points... [3.411s] Computing alignments... [101.597s] Deallocating buffers... [0.1s] Loading trace points... [0.077s] Sorting trace points... [3.952s] Computing alignments... [102.652s] Deallocating buffers... [0.265s] Loading trace points... [0.053s] Sorting trace points... [3.073s] Computing alignments... [100.437s] Deallocating buffers... [0.291s] Loading trace points... [0.072s] Sorting trace points... [2.581s] Computing alignments... [99.504s] Deallocating buffers... [0.066s] Loading trace points... [0.052s] Sorting trace points... [2.683s] Computing alignments... [100.096s] Deallocating buffers... [0.176s] Loading trace points... [0.052s] Sorting trace points... [4.126s] Computing alignments... [99.38s] Deallocating buffers... [0.485s] Loading trace points... [0s] Sorting trace points... [2.877s] Computing alignments... [98.686s] Deallocating buffers... [0.207s] Loading trace points... [0s] [1681.05s] Deallocating reference... [0.065s] Loading reference sequences... [249.297s] Masking reference... [30.882s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.488s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.359s] Building query seed array... [2.634s] Computing hash join... [6.117s] Masking low complexity seeds... [0.225s] Searching alignments... [771.633s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.224s] Building query seed array... [3.259s] Computing hash join... [6.166s] Masking low complexity seeds... [0.216s] Searching alignments... [351.746s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.279s] Building query seed array... [3.515s] Computing hash join... [5.306s] Masking low complexity seeds... [0.224s] Searching alignments... [245.835s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.308s] Building query seed array... [2.7s] Computing hash join... [5.342s] Masking low complexity seeds... [0.243s] Searching alignments... [258.651s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.263s] Building query seed array... [2.547s] Computing hash join... [5.073s] Masking low complexity seeds... [0.209s] Searching alignments... [372.145s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.997s] Building query seed array... [2.964s] Computing hash join... [5.076s] Masking low complexity seeds... [0.193s] Searching alignments... [282.696s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.096s] Building query seed array... [2.917s] Computing hash join... [6.035s] Masking low complexity seeds... [0.213s] Searching alignments... [206.232s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.603s] Building query seed array... [2.568s] Computing hash join... [4.953s] Masking low complexity seeds... [0.228s] Searching alignments... [217.753s] Deallocating memory... [0s] Deallocating buffers... [1.919s] Clearing query masking... [1.678s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.433s] Sorting trace points... [3.653s] Computing alignments... [102.229s] Deallocating buffers... [0.093s] Loading trace points... [0.071s] Sorting trace points... [2.965s] Computing alignments... [105.948s] Deallocating buffers... [0.291s] Loading trace points... [0.141s] Sorting trace points... [3.539s] Computing alignments... [106.242s] Deallocating buffers... [0.5s] Loading trace points... [0.064s] Sorting trace points... [3.08s] Computing alignments... [109.836s] Deallocating buffers... [0.121s] Loading trace points... [0.067s] Sorting trace points... [3.736s] Computing alignments... [106.9s] Deallocating buffers... [0.423s] Loading trace points... [0.059s] Sorting trace points... [3.15s] Computing alignments... [108.659s] Deallocating buffers... [0.348s] Loading trace points... [0.068s] Sorting trace points... [3.654s] Computing alignments... [107.217s] Deallocating buffers... [0.33s] Loading trace points... [0.05s] Sorting trace points... [2.918s] Computing alignments... [109.45s] Deallocating buffers... [0.296s] Loading trace points... [0.058s] Sorting trace points... [3.245s] Computing alignments... [105.373s] Deallocating buffers... [0.279s] Loading trace points... [0.108s] Sorting trace points... [2.499s] Computing alignments... [107.851s] Deallocating buffers... [0.1s] Loading trace points... [0.081s] Sorting trace points... [2.712s] Computing alignments... [109.132s] Deallocating buffers... [0.22s] Loading trace points... [0.041s] Sorting trace points... [2.724s] Computing alignments... [106.695s] Deallocating buffers... [0.134s] Loading trace points... [0.087s] Sorting trace points... [3.415s] Computing alignments... [105.965s] Deallocating buffers... [0.306s] Loading trace points... [0.077s] Sorting trace points... [3.225s] Computing alignments... [106.038s] Deallocating buffers... [0.206s] Loading trace points... [0.06s] Sorting trace points... [2.966s] Computing alignments... [105.844s] Deallocating buffers... [0.283s] Loading trace points... [0s] Sorting trace points... [3.443s] Computing alignments... [104.606s] Deallocating buffers... [0.381s] Loading trace points... [0s] [1781.85s] Deallocating reference... [0.063s] Loading reference sequences... [248.99s] Masking reference... [31.565s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.143s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.271s] Building query seed array... [2.627s] Computing hash join... [5.671s] Masking low complexity seeds... [0.226s] Searching alignments... [777.902s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.572s] Building query seed array... [3.24s] Computing hash join... [5.59s] Masking low complexity seeds... [0.219s] Searching alignments... [340.56s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.076s] Building query seed array... [3.227s] Computing hash join... [5.362s] Masking low complexity seeds... [0.214s] Searching alignments... [243.761s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.166s] Building query seed array... [2.801s] Computing hash join... [5.362s] Masking low complexity seeds... [0.208s] Searching alignments... [255.598s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.798s] Building query seed array... [2.455s] Computing hash join... [5.351s] Masking low complexity seeds... [0.247s] Searching alignments... [364.126s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.488s] Building query seed array... [2.893s] Computing hash join... [5.479s] Masking low complexity seeds... [0.247s] Searching alignments... [281.462s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.367s] Building query seed array... [2.965s] Computing hash join... [5.78s] Masking low complexity seeds... [0.228s] Searching alignments... [206.241s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.901s] Building query seed array... [2.599s] Computing hash join... [5.504s] Masking low complexity seeds... [0.222s] Searching alignments... [218.281s] Deallocating memory... [0s] Deallocating buffers... [0.812s] Clearing query masking... [1.685s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [18.916s] Sorting trace points... [2.579s] Computing alignments... [88.566s] Deallocating buffers... [0.067s] Loading trace points... [0.002s] Sorting trace points... [3.738s] Computing alignments... [90.624s] Deallocating buffers... [0.261s] Loading trace points... [0.054s] Sorting trace points... [3.291s] Computing alignments... [90.612s] Deallocating buffers... [0.095s] Loading trace points... [0.083s] Sorting trace points... [4.24s] Computing alignments... [92.611s] Deallocating buffers... [0.705s] Loading trace points... [0.059s] Sorting trace points... [3.645s] Computing alignments... [88.975s] Deallocating buffers... [0.184s] Loading trace points... [0.071s] Sorting trace points... [4.015s] Computing alignments... [90.441s] Deallocating buffers... [0.744s] Loading trace points... [0.001s] Sorting trace points... [3.402s] Computing alignments... [88.988s] Deallocating buffers... [0.117s] Loading trace points... [0.086s] Sorting trace points... [4.183s] Computing alignments... [92.543s] Deallocating buffers... [0.641s] Loading trace points... [0.067s] Sorting trace points... [3.486s] Computing alignments... [89.959s] Deallocating buffers... [0.107s] Loading trace points... [0.061s] Sorting trace points... [3.593s] Computing alignments... [89.798s] Deallocating buffers... [0.537s] Loading trace points... [0.086s] Sorting trace points... [3.068s] Computing alignments... [91.334s] Deallocating buffers... [0.064s] Loading trace points... [0.069s] Sorting trace points... [4.118s] Computing alignments... [91.832s] Deallocating buffers... [0.656s] Loading trace points... [0.058s] Sorting trace points... [2.945s] Computing alignments... [89.687s] Deallocating buffers... [0.052s] Loading trace points... [0.09s] Sorting trace points... [3.703s] Computing alignments... [89.902s] Deallocating buffers... [0.257s] Loading trace points... [0.079s] Sorting trace points... [4.111s] Computing alignments... [89.118s] Deallocating buffers... [0.568s] Loading trace points... [0s] Sorting trace points... [2.927s] Computing alignments... [88.325s] Deallocating buffers... [0.103s] Loading trace points... [0s] [1525.41s] Deallocating reference... [0.065s] Loading reference sequences... [29.715s] Masking reference... [30.922s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.317s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.405s] Building query seed array... [2.7s] Computing hash join... [6.445s] Masking low complexity seeds... [0.36s] Searching alignments... [771.81s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.934s] Building query seed array... [3.492s] Computing hash join... [5.881s] Masking low complexity seeds... [0.234s] Searching alignments... [348.917s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.393s] Building query seed array... [3.144s] Computing hash join... [5.095s] Masking low complexity seeds... [0.237s] Searching alignments... [245.546s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.71s] Building query seed array... [2.687s] Computing hash join... [5.487s] Masking low complexity seeds... [0.223s] Searching alignments... [253.85s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.691s] Building query seed array... [2.555s] Computing hash join... [5.201s] Masking low complexity seeds... [0.232s] Searching alignments... [369.858s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.242s] Building query seed array... [2.848s] Computing hash join... [5.555s] Masking low complexity seeds... [0.22s] Searching alignments... [284.23s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.548s] Building query seed array... [2.909s] Computing hash join... [5.252s] Masking low complexity seeds... [0.245s] Searching alignments... [207.066s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.383s] Building query seed array... [2.547s] Computing hash join... [5.108s] Masking low complexity seeds... [0.224s] Searching alignments... [216.3s] Deallocating memory... [0s] Deallocating buffers... [1.788s] Clearing query masking... [1.753s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.068s] Sorting trace points... [3.659s] Computing alignments... [88.323s] Deallocating buffers... [0.371s] Loading trace points... [0.048s] Sorting trace points... [3.456s] Computing alignments... [89.796s] Deallocating buffers... [0.04s] Loading trace points... [0.043s] Sorting trace points... [3.494s] Computing alignments... [90.546s] Deallocating buffers... [0.632s] Loading trace points... [0s] Sorting trace points... [2.787s] Computing alignments... [92.361s] Deallocating buffers... [0.049s] Loading trace points... [0.061s] Sorting trace points... [4.26s] Computing alignments... [88.911s] Deallocating buffers... [0.698s] Loading trace points... [0.098s] Sorting trace points... [3.824s] Computing alignments... [90.496s] Deallocating buffers... [0.335s] Loading trace points... [0.002s] Sorting trace points... [4.075s] Computing alignments... [88.7s] Deallocating buffers... [0.261s] Loading trace points... [0.06s] Sorting trace points... [3.734s] Computing alignments... [91.763s] Deallocating buffers... [0.098s] Loading trace points... [0.086s] Sorting trace points... [4.225s] Computing alignments... [89.943s] Deallocating buffers... [0.782s] Loading trace points... [0.072s] Sorting trace points... [3.478s] Computing alignments... [90.483s] Deallocating buffers... [0.174s] Loading trace points... [0.077s] Sorting trace points... [3.579s] Computing alignments... [91.514s] Deallocating buffers... [0.151s] Loading trace points... [0.069s] Sorting trace points... [4.333s] Computing alignments... [91.42s] Deallocating buffers... [0.788s] Loading trace points... [0.065s] Sorting trace points... [2.733s] Computing alignments... [88.936s] Deallocating buffers... [0.076s] Loading trace points... [0.081s] Sorting trace points... [4.053s] Computing alignments... [89.983s] Deallocating buffers... [0.453s] Loading trace points... [0.091s] Sorting trace points... [3.118s] Computing alignments... [88.889s] Deallocating buffers... [0.064s] Loading trace points... [0s] Sorting trace points... [3.877s] Computing alignments... [88.246s] Deallocating buffers... [0.715s] Loading trace points... [0s] [1523.74s] Deallocating reference... [0.066s] Loading reference sequences... [29.918s] Masking reference... [30.888s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.485s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.392s] Building query seed array... [2.663s] Computing hash join... [5.798s] Masking low complexity seeds... [0.227s] Searching alignments... [783.066s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.504s] Building query seed array... [3.243s] Computing hash join... [5.572s] Masking low complexity seeds... [0.228s] Searching alignments... [343.243s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.958s] Building query seed array... [3.387s] Computing hash join... [5.849s] Masking low complexity seeds... [0.272s] Searching alignments... [244.245s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.543s] Building query seed array... [2.699s] Computing hash join... [5.76s] Masking low complexity seeds... [0.303s] Searching alignments... [253.284s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.038s] Building query seed array... [2.468s] Computing hash join... [5.36s] Masking low complexity seeds... [0.218s] Searching alignments... [367.415s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.192s] Building query seed array... [2.783s] Computing hash join... [5.245s] Masking low complexity seeds... [0.218s] Searching alignments... [277.065s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.997s] Building query seed array... [3.117s] Computing hash join... [5.542s] Masking low complexity seeds... [0.249s] Searching alignments... [207.935s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.994s] Building query seed array... [2.567s] Computing hash join... [5.57s] Masking low complexity seeds... [0.222s] Searching alignments... [214.895s] Deallocating memory... [0s] Deallocating buffers... [1.122s] Clearing query masking... [1.777s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.347s] Sorting trace points... [3.42s] Computing alignments... [84.957s] Deallocating buffers... [0.039s] Loading trace points... [0.065s] Sorting trace points... [3.401s] Computing alignments... [86.579s] Deallocating buffers... [0.173s] Loading trace points... [0.068s] Sorting trace points... [4.266s] Computing alignments... [86.508s] Deallocating buffers... [0.733s] Loading trace points... [0.534s] Sorting trace points... [3.869s] Computing alignments... [89.185s] Deallocating buffers... [0.152s] Loading trace points... [0.061s] Sorting trace points... [2.969s] Computing alignments... [85.893s] Deallocating buffers... [0.157s] Loading trace points... [0.077s] Sorting trace points... [3.628s] Computing alignments... [86.259s] Deallocating buffers... [0.256s] Loading trace points... [0.06s] Sorting trace points... [3.469s] Computing alignments... [84.973s] Deallocating buffers... [0.041s] Loading trace points... [0.326s] Sorting trace points... [3.298s] Computing alignments... [88.202s] Deallocating buffers... [0.415s] Loading trace points... [0.052s] Sorting trace points... [4.056s] Computing alignments... [86.729s] Deallocating buffers... [0.673s] Loading trace points... [0.091s] Sorting trace points... [4.037s] Computing alignments... [86.866s] Deallocating buffers... [0.102s] Loading trace points... [0.055s] Sorting trace points... [4.301s] Computing alignments... [88.678s] Deallocating buffers... [0.86s] Loading trace points... [0.045s] Sorting trace points... [2.743s] Computing alignments... [88.088s] Deallocating buffers... [0.046s] Loading trace points... [0.225s] Sorting trace points... [4.072s] Computing alignments... [85.922s] Deallocating buffers... [0.577s] Loading trace points... [0.049s] Sorting trace points... [2.989s] Computing alignments... [86.346s] Deallocating buffers... [0.048s] Loading trace points... [0.048s] Sorting trace points... [3.371s] Computing alignments... [85.655s] Deallocating buffers... [0.24s] Loading trace points... [0s] Sorting trace points... [3.031s] Computing alignments... [85.113s] Deallocating buffers... [0.043s] Loading trace points... [0s] [1466.78s] Deallocating reference... [0.066s] Loading reference sequences... [29.13s] Masking reference... [30.901s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.716s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.243s] Building query seed array... [2.678s] Computing hash join... [5.777s] Masking low complexity seeds... [0.236s] Searching alignments... [781.28s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.435s] Building query seed array... [3.592s] Computing hash join... [5.455s] Masking low complexity seeds... [0.26s] Searching alignments... [349.037s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.432s] Building query seed array... [3.279s] Computing hash join... [5.619s] Masking low complexity seeds... [0.227s] Searching alignments... [246.409s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.322s] Building query seed array... [2.766s] Computing hash join... [5.593s] Masking low complexity seeds... [0.225s] Searching alignments... [258.066s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.006s] Building query seed array... [2.458s] Computing hash join... [5.481s] Masking low complexity seeds... [0.208s] Searching alignments... [368.716s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.892s] Building query seed array... [2.868s] Computing hash join... [5.462s] Masking low complexity seeds... [0.247s] Searching alignments... [280.956s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.821s] Building query seed array... [2.919s] Computing hash join... [5.723s] Masking low complexity seeds... [0.206s] Searching alignments... [208.067s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.322s] Building query seed array... [2.539s] Computing hash join... [5.602s] Masking low complexity seeds... [0.209s] Searching alignments... [219.323s] Deallocating memory... [0s] Deallocating buffers... [1.179s] Clearing query masking... [1.803s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.806s] Sorting trace points... [3.465s] Computing alignments... [98.028s] Deallocating buffers... [0.269s] Loading trace points... [0s] Sorting trace points... [3.254s] Computing alignments... [102.52s] Deallocating buffers... [0.127s] Loading trace points... [0.04s] Sorting trace points... [4.005s] Computing alignments... [101.835s] Deallocating buffers... [0.259s] Loading trace points... [0.075s] Sorting trace points... [3.934s] Computing alignments... [105.255s] Deallocating buffers... [0.786s] Loading trace points... [0.099s] Sorting trace points... [3.514s] Computing alignments... [102.962s] Deallocating buffers... [0.31s] Loading trace points... [0.085s] Sorting trace points... [2.929s] Computing alignments... [104.618s] Deallocating buffers... [0.248s] Loading trace points... [0.091s] Sorting trace points... [3.383s] Computing alignments... [103.897s] Deallocating buffers... [0.161s] Loading trace points... [0.073s] Sorting trace points... [3.936s] Computing alignments... [104.428s] Deallocating buffers... [0.656s] Loading trace points... [0.078s] Sorting trace points... [2.988s] Computing alignments... [101.029s] Deallocating buffers... [0.094s] Loading trace points... [0.054s] Sorting trace points... [2.798s] Computing alignments... [103.567s] Deallocating buffers... [0.272s] Loading trace points... [0.083s] Sorting trace points... [4.003s] Computing alignments... [105.116s] Deallocating buffers... [0.336s] Loading trace points... [0.081s] Sorting trace points... [2.954s] Computing alignments... [102.021s] Deallocating buffers... [0.148s] Loading trace points... [0.072s] Sorting trace points... [3.418s] Computing alignments... [101.763s] Deallocating buffers... [0.173s] Loading trace points... [0.061s] Sorting trace points... [3.852s] Computing alignments... [102.073s] Deallocating buffers... [0.415s] Loading trace points... [0.092s] Sorting trace points... [3.699s] Computing alignments... [100.311s] Deallocating buffers... [0.168s] Loading trace points... [0s] Sorting trace points... [3.071s] Computing alignments... [100.3s] Deallocating buffers... [0.122s] Loading trace points... [0s] [1718.44s] Deallocating reference... [0.068s] Loading reference sequences... [31.104s] Masking reference... [30.878s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.822s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.639s] Building query seed array... [2.646s] Computing hash join... [5.759s] Masking low complexity seeds... [0.215s] Searching alignments... [782.849s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.796s] Building query seed array... [3.572s] Computing hash join... [6.003s] Masking low complexity seeds... [0.234s] Searching alignments... [348.169s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.251s] Building query seed array... [3.115s] Computing hash join... [5.746s] Masking low complexity seeds... [0.256s] Searching alignments... [245.544s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.349s] Building query seed array... [2.719s] Computing hash join... [5.503s] Masking low complexity seeds... [0.225s] Searching alignments... [253.786s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.24s] Building query seed array... [2.548s] Computing hash join... [4.992s] Masking low complexity seeds... [0.206s] Searching alignments... [366.268s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.913s] Building query seed array... [2.864s] Computing hash join... [5.603s] Masking low complexity seeds... [0.252s] Searching alignments... [280.77s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.941s] Building query seed array... [3.038s] Computing hash join... [6.003s] Masking low complexity seeds... [0.21s] Searching alignments... [205.77s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.617s] Building query seed array... [2.393s] Computing hash join... [5.89s] Masking low complexity seeds... [0.249s] Searching alignments... [216.038s] Deallocating memory... [0s] Deallocating buffers... [1.661s] Clearing query masking... [1.797s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.145s] Sorting trace points... [3.542s] Computing alignments... [83.068s] Deallocating buffers... [0.383s] Loading trace points... [0.115s] Sorting trace points... [3.517s] Computing alignments... [84.376s] Deallocating buffers... [0.041s] Loading trace points... [0.052s] Sorting trace points... [3.513s] Computing alignments... [84.749s] Deallocating buffers... [0.228s] Loading trace points... [0.077s] Sorting trace points... [4.382s] Computing alignments... [87.781s] Deallocating buffers... [0.833s] Loading trace points... [0.095s] Sorting trace points... [3.22s] Computing alignments... [84.326s] Deallocating buffers... [0.044s] Loading trace points... [0.108s] Sorting trace points... [3.739s] Computing alignments... [84.667s] Deallocating buffers... [0.32s] Loading trace points... [0.068s] Sorting trace points... [4.188s] Computing alignments... [83.812s] Deallocating buffers... [0.735s] Loading trace points... [0.089s] Sorting trace points... [3.057s] Computing alignments... [86.575s] Deallocating buffers... [0.045s] Loading trace points... [0.058s] Sorting trace points... [3.893s] Computing alignments... [84.376s] Deallocating buffers... [0.493s] Loading trace points... [0.065s] Sorting trace points... [4.207s] Computing alignments... [85.243s] Deallocating buffers... [0.663s] Loading trace points... [0.089s] Sorting trace points... [2.6s] Computing alignments... [86.311s] Deallocating buffers... [0.046s] Loading trace points... [0.062s] Sorting trace points... [4.049s] Computing alignments... [85.861s] Deallocating buffers... [0.608s] Loading trace points... [0.047s] Sorting trace points... [3.894s] Computing alignments... [83.927s] Deallocating buffers... [0.475s] Loading trace points... [0.075s] Sorting trace points... [2.791s] Computing alignments... [84.814s] Deallocating buffers... [0.044s] Loading trace points... [0.056s] Sorting trace points... [3.969s] Computing alignments... [84.148s] Deallocating buffers... [0.645s] Loading trace points... [0s] Sorting trace points... [3.369s] Computing alignments... [83.221s] Deallocating buffers... [0.05s] Loading trace points... [0s] [1440.22s] Deallocating reference... [0.055s] Loading reference sequences... [28.985s] Masking reference... [30.874s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.608s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.561s] Building query seed array... [2.607s] Computing hash join... [6.235s] Masking low complexity seeds... [0.224s] Searching alignments... [773.155s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.682s] Building query seed array... [3.205s] Computing hash join... [6.573s] Masking low complexity seeds... [0.222s] Searching alignments... [352.7s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.463s] Building query seed array... [3.118s] Computing hash join... [6.653s] Masking low complexity seeds... [0.223s] Searching alignments... [247.483s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.066s] Building query seed array... [2.603s] Computing hash join... [6.312s] Masking low complexity seeds... [0.225s] Searching alignments... [256.993s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.308s] Building query seed array... [2.369s] Computing hash join... [6.297s] Masking low complexity seeds... [0.22s] Searching alignments... [378.34s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.441s] Building query seed array... [2.703s] Computing hash join... [6.453s] Masking low complexity seeds... [0.219s] Searching alignments... [281.817s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.361s] Building query seed array... [2.973s] Computing hash join... [6.526s] Masking low complexity seeds... [0.212s] Searching alignments... [205.758s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.08s] Building query seed array... [2.486s] Computing hash join... [6.368s] Masking low complexity seeds... [0.205s] Searching alignments... [217.24s] Deallocating memory... [0s] Deallocating buffers... [0.802s] Clearing query masking... [2.096s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.302s] Sorting trace points... [3.631s] Computing alignments... [101.934s] Deallocating buffers... [0.342s] Loading trace points... [0.086s] Sorting trace points... [3.817s] Computing alignments... [104.75s] Deallocating buffers... [0.722s] Loading trace points... [0.07s] Sorting trace points... [2.543s] Computing alignments... [105.122s] Deallocating buffers... [0.075s] Loading trace points... [0.075s] Sorting trace points... [2.93s] Computing alignments... [109.352s] Deallocating buffers... [0.313s] Loading trace points... [0.06s] Sorting trace points... [3.596s] Computing alignments... [105.053s] Deallocating buffers... [0.38s] Loading trace points... [0.08s] Sorting trace points... [3.767s] Computing alignments... [107.193s] Deallocating buffers... [0.59s] Loading trace points... [0.108s] Sorting trace points... [3.911s] Computing alignments... [104.906s] Deallocating buffers... [0.269s] Loading trace points... [0.051s] Sorting trace points... [4.091s] Computing alignments... [107.974s] Deallocating buffers... [0.765s] Loading trace points... [0.054s] Sorting trace points... [3.322s] Computing alignments... [104.34s] Deallocating buffers... [0.084s] Loading trace points... [0.108s] Sorting trace points... [3.264s] Computing alignments... [105.075s] Deallocating buffers... [0.298s] Loading trace points... [0.063s] Sorting trace points... [3.155s] Computing alignments... [107.874s] Deallocating buffers... [0.169s] Loading trace points... [0.002s] Sorting trace points... [3.298s] Computing alignments... [105.646s] Deallocating buffers... [0.549s] Loading trace points... [0.096s] Sorting trace points... [2.915s] Computing alignments... [104.333s] Deallocating buffers... [0.067s] Loading trace points... [0.048s] Sorting trace points... [2.7s] Computing alignments... [104.67s] Deallocating buffers... [0.273s] Loading trace points... [0.06s] Sorting trace points... [2.662s] Computing alignments... [103.191s] Deallocating buffers... [0.244s] Loading trace points... [0s] Sorting trace points... [3.685s] Computing alignments... [103.837s] Deallocating buffers... [0.449s] Loading trace points... [0s] [1763.52s] Deallocating reference... [0.062s] Loading reference sequences... [246.895s] Masking reference... [31.063s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.231s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.066s] Building query seed array... [2.577s] Computing hash join... [5.798s] Masking low complexity seeds... [0.222s] Searching alignments... [779.655s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.179s] Building query seed array... [3.535s] Computing hash join... [5.362s] Masking low complexity seeds... [0.224s] Searching alignments... [344.963s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.674s] Building query seed array... [3.156s] Computing hash join... [5.755s] Masking low complexity seeds... [0.217s] Searching alignments... [249.042s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.416s] Building query seed array... [2.798s] Computing hash join... [5.512s] Masking low complexity seeds... [0.229s] Searching alignments... [255.699s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.494s] Building query seed array... [2.644s] Computing hash join... [5.07s] Masking low complexity seeds... [0.219s] Searching alignments... [368.022s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.695s] Building query seed array... [2.925s] Computing hash join... [5.191s] Masking low complexity seeds... [0.219s] Searching alignments... [283.557s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.754s] Building query seed array... [3.031s] Computing hash join... [5.61s] Masking low complexity seeds... [0.207s] Searching alignments... [206.16s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.316s] Building query seed array... [2.578s] Computing hash join... [5.49s] Masking low complexity seeds... [0.213s] Searching alignments... [217.359s] Deallocating memory... [0s] Deallocating buffers... [1.57s] Clearing query masking... [1.797s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.565s] Sorting trace points... [3.524s] Computing alignments... [99.529s] Deallocating buffers... [0.19s] Loading trace points... [0.06s] Sorting trace points... [4.27s] Computing alignments... [104.002s] Deallocating buffers... [0.864s] Loading trace points... [0.064s] Sorting trace points... [2.876s] Computing alignments... [104.365s] Deallocating buffers... [0.092s] Loading trace points... [0.037s] Sorting trace points... [3.45s] Computing alignments... [107.733s] Deallocating buffers... [0.556s] Loading trace points... [0.092s] Sorting trace points... [3.261s] Computing alignments... [105.255s] Deallocating buffers... [0.212s] Loading trace points... [0.001s] Sorting trace points... [2.99s] Computing alignments... [105.608s] Deallocating buffers... [0.339s] Loading trace points... [0.039s] Sorting trace points... [3.438s] Computing alignments... [104.015s] Deallocating buffers... [0.498s] Loading trace points... [0.074s] Sorting trace points... [3.523s] Computing alignments... [106.663s] Deallocating buffers... [0.399s] Loading trace points... [0s] Sorting trace points... [3.012s] Computing alignments... [103.142s] Deallocating buffers... [0.098s] Loading trace points... [0.075s] Sorting trace points... [3.085s] Computing alignments... [105.595s] Deallocating buffers... [0.363s] Loading trace points... [0.093s] Sorting trace points... [3.627s] Computing alignments... [106.694s] Deallocating buffers... [0.495s] Loading trace points... [0.08s] Sorting trace points... [2.817s] Computing alignments... [103.955s] Deallocating buffers... [0.208s] Loading trace points... [0.069s] Sorting trace points... [3.625s] Computing alignments... [103.741s] Deallocating buffers... [0.276s] Loading trace points... [0.593s] Sorting trace points... [2.975s] Computing alignments... [102.969s] Deallocating buffers... [0.159s] Loading trace points... [0.09s] Sorting trace points... [4.022s] Computing alignments... [103.017s] Deallocating buffers... [0.771s] Loading trace points... [0s] Sorting trace points... [3.615s] Computing alignments... [102.203s] Deallocating buffers... [0.376s] Loading trace points... [0s] [1747.56s] Deallocating reference... [0.067s] Loading reference sequences... [28.908s] Masking reference... [31.54s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.728s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.443s] Building query seed array... [2.68s] Computing hash join... [5.655s] Masking low complexity seeds... [0.212s] Searching alignments... [779.168s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.139s] Building query seed array... [3.359s] Computing hash join... [5.302s] Masking low complexity seeds... [0.22s] Searching alignments... [346.419s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.283s] Building query seed array... [3.248s] Computing hash join... [5.199s] Masking low complexity seeds... [0.212s] Searching alignments... [244.419s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.875s] Building query seed array... [2.853s] Computing hash join... [5.618s] Masking low complexity seeds... [0.224s] Searching alignments... [257.116s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.174s] Building query seed array... [2.567s] Computing hash join... [5.577s] Masking low complexity seeds... [0.234s] Searching alignments... [371.918s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.573s] Building query seed array... [2.762s] Computing hash join... [5.404s] Masking low complexity seeds... [0.218s] Searching alignments... [281.413s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.523s] Building query seed array... [3.007s] Computing hash join... [5.315s] Masking low complexity seeds... [0.202s] Searching alignments... [205.905s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.69s] Building query seed array... [2.644s] Computing hash join... [5.214s] Masking low complexity seeds... [0.207s] Searching alignments... [212.419s] Deallocating memory... [0s] Deallocating buffers... [1.21s] Clearing query masking... [1.716s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.872s] Sorting trace points... [3.424s] Computing alignments... [96.5s] Deallocating buffers... [0.267s] Loading trace points... [0.001s] Sorting trace points... [3.702s] Computing alignments... [100.128s] Deallocating buffers... [0.57s] Loading trace points... [0.051s] Sorting trace points... [3.623s] Computing alignments... [100.28s] Deallocating buffers... [0.234s] Loading trace points... [0.08s] Sorting trace points... [3.957s] Computing alignments... [103.581s] Deallocating buffers... [0.398s] Loading trace points... [0.099s] Sorting trace points... [3.739s] Computing alignments... [100.643s] Deallocating buffers... [0.294s] Loading trace points... [0.074s] Sorting trace points... [3.591s] Computing alignments... [102.129s] Deallocating buffers... [0.491s] Loading trace points... [0.091s] Sorting trace points... [3.367s] Computing alignments... [98.814s] Deallocating buffers... [0.041s] Loading trace points... [0.077s] Sorting trace points... [4.013s] Computing alignments... [102.072s] Deallocating buffers... [0.564s] Loading trace points... [0.169s] Sorting trace points... [3.156s] Computing alignments... [99.646s] Deallocating buffers... [0.206s] Loading trace points... [0.078s] Sorting trace points... [4.078s] Computing alignments... [100.824s] Deallocating buffers... [0.808s] Loading trace points... [0.081s] Sorting trace points... [3.01s] Computing alignments... [102.766s] Deallocating buffers... [0.064s] Loading trace points... [0.085s] Sorting trace points... [3.312s] Computing alignments... [100.309s] Deallocating buffers... [0.304s] Loading trace points... [0.046s] Sorting trace points... [3.617s] Computing alignments... [99.537s] Deallocating buffers... [0.25s] Loading trace points... [0.072s] Sorting trace points... [3.914s] Computing alignments... [99.991s] Deallocating buffers... [0.548s] Loading trace points... [0.074s] Sorting trace points... [2.832s] Computing alignments... [98.862s] Deallocating buffers... [0.086s] Loading trace points... [0s] Sorting trace points... [3.236s] Computing alignments... [99.046s] Deallocating buffers... [0.415s] Loading trace points... [0s] [1686.32s] Deallocating reference... [0.072s] Loading reference sequences... [24.53s] Masking reference... [25.023s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.006s] Building reference histograms... [26.934s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.594s] Building query seed array... [2.649s] Computing hash join... [5.072s] Masking low complexity seeds... [0.206s] Searching alignments... [632.18s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.684s] Building query seed array... [3.258s] Computing hash join... [4.406s] Masking low complexity seeds... [0.199s] Searching alignments... [276.966s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.337s] Building query seed array... [3.22s] Computing hash join... [4.379s] Masking low complexity seeds... [0.231s] Searching alignments... [198.228s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.599s] Building query seed array... [2.712s] Computing hash join... [4.776s] Masking low complexity seeds... [0.218s] Searching alignments... [204.696s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.383s] Building query seed array... [2.473s] Computing hash join... [4.179s] Masking low complexity seeds... [0.187s] Searching alignments... [293.6s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.454s] Building query seed array... [2.925s] Computing hash join... [4.186s] Masking low complexity seeds... [0.215s] Searching alignments... [227.478s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.835s] Building query seed array... [2.854s] Computing hash join... [4.101s] Masking low complexity seeds... [0.193s] Searching alignments... [166.997s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.698s] Building query seed array... [2.634s] Computing hash join... [4.477s] Masking low complexity seeds... [0.202s] Searching alignments... [173.195s] Deallocating memory... [0s] Deallocating buffers... [1.184s] Clearing query masking... [1.751s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.408s] Sorting trace points... [2.79s] Computing alignments... [73.912s] Deallocating buffers... [0.049s] Loading trace points... [0.089s] Sorting trace points... [2.857s] Computing alignments... [76.659s] Deallocating buffers... [0.041s] Loading trace points... [0.046s] Sorting trace points... [3.216s] Computing alignments... [76.851s] Deallocating buffers... [0.535s] Loading trace points... [0.1s] Sorting trace points... [2.18s] Computing alignments... [80.783s] Deallocating buffers... [0.07s] Loading trace points... [0.079s] Sorting trace points... [2.391s] Computing alignments... [77.651s] Deallocating buffers... [0.035s] Loading trace points... [0.08s] Sorting trace points... [2.615s] Computing alignments... [78.856s] Deallocating buffers... [0.057s] Loading trace points... [0.043s] Sorting trace points... [2.816s] Computing alignments... [77.041s] Deallocating buffers... [0.217s] Loading trace points... [0.05s] Sorting trace points... [3.069s] Computing alignments... [78.727s] Deallocating buffers... [0.16s] Loading trace points... [0.069s] Sorting trace points... [3.333s] Computing alignments... [77.222s] Deallocating buffers... [0.56s] Loading trace points... [0.069s] Sorting trace points... [2.568s] Computing alignments... [78.702s] Deallocating buffers... [0.056s] Loading trace points... [0.001s] Sorting trace points... [2.277s] Computing alignments... [79.221s] Deallocating buffers... [0.058s] Loading trace points... [0.07s] Sorting trace points... [2.813s] Computing alignments... [78.081s] Deallocating buffers... [0.315s] Loading trace points... [0.094s] Sorting trace points... [2.968s] Computing alignments... [76.892s] Deallocating buffers... [0.273s] Loading trace points... [0.059s] Sorting trace points... [2.018s] Computing alignments... [77.538s] Deallocating buffers... [0.059s] Loading trace points... [0.059s] Sorting trace points... [2.651s] Computing alignments... [76.469s] Deallocating buffers... [0.113s] Loading trace points... [0s] Sorting trace points... [2.813s] Computing alignments... [76.045s] Deallocating buffers... [0.049s] Loading trace points... [0s] [1302.14s] Deallocating reference... [0.056s] Loading reference sequences... [0.08s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [5807.31s] [5807.31s] Deallocating queries... [0.065s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.099s] [3.893s] Closing the database... [0s] Cleaning up... [0s] Total time = 70012.4s Reported 6235153401 pairwise alignments, 6235153401 HSPs. 6624320 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-09.trimmed.R2.fastq.gz complete: CH05-09.trimmed.R2.blastx.meganized.daa Now MEGANizing CH05-09.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-09.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (306.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10,566.9s) Total reads: 6,624,320 With hits: 6,624,320 Alignments: 4,803,324,498 Assig. Taxonomy: 3,302,564 Assig. SEED: 87,726 Assig. EGGNOG: 22,206 Assig. GTDB: 202,274 Assig. EC: 554,187 Assig. INTERPRO2GO: 1,593,613 MinSupport set to: 3312 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 5,103 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (18.1s) Min-supp. changes: 3,261 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.9s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 162 Class. SEED: 480 Class. EGGNOG: 1,476 Class. GTDB: 43 Class. EC: 2,270 Class. INTERPRO2GO: 8,668 Total time: 10,909s Peak memory: 38 of 195.3G MEGANization of CH05-09.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-14.trimmed.R1.fastq.gz... 09e1b20e15fc8cac3d9e611ee40324e4 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-14.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-14.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.355s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.775s] Opening the output file... [0s] Loading query sequences... [112.62s] Masking queries... [29.711s] Algorithm: Double-indexed Building query histograms... [24.205s] Loading reference sequences... [29.171s] Masking reference... [32.067s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.321s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.586s] Building query seed array... [2.703s] Computing hash join... [6.325s] Masking low complexity seeds... [0.369s] Searching alignments... [1096.2s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.725s] Building query seed array... [3.515s] Computing hash join... [6.205s] Masking low complexity seeds... [0.254s] Searching alignments... [471.886s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.721s] Building query seed array... [3.453s] Computing hash join... [5.368s] Masking low complexity seeds... [0.247s] Searching alignments... [346.889s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.664s] Building query seed array... [2.968s] Computing hash join... [5.325s] Masking low complexity seeds... [0.257s] Searching alignments... [354.86s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.31s] Building query seed array... [2.571s] Computing hash join... [5.025s] Masking low complexity seeds... [0.261s] Searching alignments... [516.377s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.319s] Building query seed array... [2.832s] Computing hash join... [5.05s] Masking low complexity seeds... [0.253s] Searching alignments... [386.832s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.963s] Building query seed array... [3.19s] Computing hash join... [5.445s] Masking low complexity seeds... [0.267s] Searching alignments... [287.453s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.16s] Building query seed array... [2.652s] Computing hash join... [5.454s] Masking low complexity seeds... [0.237s] Searching alignments... [294.004s] Deallocating memory... [0s] Deallocating buffers... [1.704s] Clearing query masking... [1.643s] Opening temporary output file... [0.028s] Computing alignments... Loading trace points... [21.802s] Sorting trace points... [4.371s] Computing alignments... [111.568s] Deallocating buffers... [0.051s] Loading trace points... [0.049s] Sorting trace points... [4.663s] Computing alignments... [113.776s] Deallocating buffers... [0.635s] Loading trace points... [0.057s] Sorting trace points... [3.652s] Computing alignments... [113.809s] Deallocating buffers... [0.262s] Loading trace points... [0.076s] Sorting trace points... [4.108s] Computing alignments... [119.295s] Deallocating buffers... [0.659s] Loading trace points... [0.082s] Sorting trace points... [4.11s] Computing alignments... [112.457s] Deallocating buffers... [0.083s] Loading trace points... [0.048s] Sorting trace points... [3.962s] Computing alignments... [113.533s] Deallocating buffers... [0.393s] Loading trace points... [0.074s] Sorting trace points... [4.7s] Computing alignments... [114.705s] Deallocating buffers... [0.264s] Loading trace points... [0.043s] Sorting trace points... [3.78s] Computing alignments... [117.903s] Deallocating buffers... [0.418s] Loading trace points... [0.066s] Sorting trace points... [5.261s] Computing alignments... [114.162s] Deallocating buffers... [1.001s] Loading trace points... [0.083s] Sorting trace points... [4.29s] Computing alignments... [114.454s] Deallocating buffers... [0.064s] Loading trace points... [0.063s] Sorting trace points... [4.445s] Computing alignments... [115.704s] Deallocating buffers... [0.573s] Loading trace points... [0.086s] Sorting trace points... [4.811s] Computing alignments... [119.006s] Deallocating buffers... [0.532s] Loading trace points... [0.05s] Sorting trace points... [4.757s] Computing alignments... [114.519s] Deallocating buffers... [0.369s] Loading trace points... [0.064s] Sorting trace points... [4.66s] Computing alignments... [115.074s] Deallocating buffers... [0.309s] Loading trace points... [0.122s] Sorting trace points... [5.159s] Computing alignments... [116.194s] Deallocating buffers... [0.435s] Loading trace points... [0s] Sorting trace points... [3.953s] Computing alignments... [117.647s] Deallocating buffers... [0.149s] Loading trace points... [0s] [1943.6s] Deallocating reference... [0.06s] Loading reference sequences... [30.316s] Masking reference... [30.927s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.359s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.272s] Building query seed array... [2.633s] Computing hash join... [5.744s] Masking low complexity seeds... [0.256s] Searching alignments... [1077.7s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.72s] Building query seed array... [3.244s] Computing hash join... [5.866s] Masking low complexity seeds... [0.258s] Searching alignments... [463.787s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.078s] Building query seed array... [3.168s] Computing hash join... [5.959s] Masking low complexity seeds... [0.243s] Searching alignments... [344.497s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.239s] Building query seed array... [2.739s] Computing hash join... [5.85s] Masking low complexity seeds... [0.245s] Searching alignments... [355.766s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.081s] Building query seed array... [2.443s] Computing hash join... [5.734s] Masking low complexity seeds... [0.244s] Searching alignments... [508.072s] Deallocating memory... [0.005s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.734s] Building query seed array... [2.735s] Computing hash join... [5.833s] Masking low complexity seeds... [0.254s] Searching alignments... [379.269s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.197s] Building query seed array... [2.836s] Computing hash join... [5.869s] Masking low complexity seeds... [0.276s] Searching alignments... [284.75s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.832s] Building query seed array... [2.476s] Computing hash join... [5.754s] Masking low complexity seeds... [0.249s] Searching alignments... [291.6s] Deallocating memory... [0s] Deallocating buffers... [0.396s] Clearing query masking... [1.752s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [21.857s] Sorting trace points... [4.748s] Computing alignments... [122.326s] Deallocating buffers... [0.284s] Loading trace points... [0.086s] Sorting trace points... [4.999s] Computing alignments... [124.163s] Deallocating buffers... [0.508s] Loading trace points... [0.06s] Sorting trace points... [4.393s] Computing alignments... [122.804s] Deallocating buffers... [0.699s] Loading trace points... [0.06s] Sorting trace points... [4.063s] Computing alignments... [129.25s] Deallocating buffers... [0.202s] Loading trace points... [0.056s] Sorting trace points... [4.444s] Computing alignments... [120.264s] Deallocating buffers... [0.596s] Loading trace points... [0.052s] Sorting trace points... [3.403s] Computing alignments... [123.064s] Deallocating buffers... [0.237s] Loading trace points... [0.067s] Sorting trace points... [4.551s] Computing alignments... [123.964s] Deallocating buffers... [0.554s] Loading trace points... [0.073s] Sorting trace points... [4.263s] Computing alignments... [128.725s] Deallocating buffers... [0.522s] Loading trace points... [0.047s] Sorting trace points... [3.904s] Computing alignments... [122.451s] Deallocating buffers... [0.272s] Loading trace points... [0.599s] Sorting trace points... [4.405s] Computing alignments... [123.377s] Deallocating buffers... [0.423s] Loading trace points... [0.059s] Sorting trace points... [4.351s] Computing alignments... [124.725s] Deallocating buffers... [0.465s] Loading trace points... [0.086s] Sorting trace points... [4.198s] Computing alignments... [131.329s] Deallocating buffers... [0.598s] Loading trace points... [0.043s] Sorting trace points... [3.479s] Computing alignments... [123.892s] Deallocating buffers... [0.17s] Loading trace points... [0s] Sorting trace points... [5.183s] Computing alignments... [126.159s] Deallocating buffers... [0.748s] Loading trace points... [0.07s] Sorting trace points... [4.026s] Computing alignments... [124.834s] Deallocating buffers... [0.182s] Loading trace points... [0s] Sorting trace points... [4.91s] Computing alignments... [128.458s] Deallocating buffers... [0.537s] Loading trace points... [0s] [2099.44s] Deallocating reference... [0.064s] Loading reference sequences... [29.106s] Masking reference... [30.892s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.541s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.042s] Building query seed array... [2.62s] Computing hash join... [5.623s] Masking low complexity seeds... [0.255s] Searching alignments... [1086.95s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.914s] Building query seed array... [3.6s] Computing hash join... [5.656s] Masking low complexity seeds... [0.249s] Searching alignments... [468.177s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.33s] Building query seed array... [3.375s] Computing hash join... [5.414s] Masking low complexity seeds... [0.249s] Searching alignments... [349.105s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.035s] Building query seed array... [2.724s] Computing hash join... [5.303s] Masking low complexity seeds... [0.247s] Searching alignments... [353.025s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.965s] Building query seed array... [2.465s] Computing hash join... [5.273s] Masking low complexity seeds... [0.288s] Searching alignments... [515.785s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.178s] Building query seed array... [2.958s] Computing hash join... [5.537s] Masking low complexity seeds... [0.239s] Searching alignments... [387.678s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.533s] Building query seed array... [3.143s] Computing hash join... [5.438s] Masking low complexity seeds... [0.282s] Searching alignments... [285.935s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.938s] Building query seed array... [2.679s] Computing hash join... [5.539s] Masking low complexity seeds... [0.254s] Searching alignments... [299.494s] Deallocating memory... [0s] Deallocating buffers... [0.759s] Clearing query masking... [1.717s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [21.733s] Sorting trace points... [4.238s] Computing alignments... [118.201s] Deallocating buffers... [0.217s] Loading trace points... [0.072s] Sorting trace points... [4.886s] Computing alignments... [120.62s] Deallocating buffers... [0.759s] Loading trace points... [0.107s] Sorting trace points... [4.508s] Computing alignments... [121.299s] Deallocating buffers... [0.453s] Loading trace points... [0.072s] Sorting trace points... [5.635s] Computing alignments... [126.349s] Deallocating buffers... [1.087s] Loading trace points... [0.067s] Sorting trace points... [3.66s] Computing alignments... [116.942s] Deallocating buffers... [0.082s] Loading trace points... [0.072s] Sorting trace points... [5.083s] Computing alignments... [120.164s] Deallocating buffers... [0.716s] Loading trace points... [0.102s] Sorting trace points... [4.692s] Computing alignments... [120.83s] Deallocating buffers... [0.422s] Loading trace points... [0.08s] Sorting trace points... [5.692s] Computing alignments... [125.329s] Deallocating buffers... [1.076s] Loading trace points... [0.093s] Sorting trace points... [5.19s] Computing alignments... [119.54s] Deallocating buffers... [0.541s] Loading trace points... [0.105s] Sorting trace points... [3.994s] Computing alignments... [120.033s] Deallocating buffers... [0.611s] Loading trace points... [0.071s] Sorting trace points... [4.834s] Computing alignments... [122.649s] Deallocating buffers... [0.46s] Loading trace points... [0.078s] Sorting trace points... [4.696s] Computing alignments... [126.023s] Deallocating buffers... [0.528s] Loading trace points... [0.067s] Sorting trace points... [5.119s] Computing alignments... [120.951s] Deallocating buffers... [0.83s] Loading trace points... [0.092s] Sorting trace points... [5.218s] Computing alignments... [121.164s] Deallocating buffers... [0.706s] Loading trace points... [0.16s] Sorting trace points... [4.315s] Computing alignments... [121.384s] Deallocating buffers... [0.654s] Loading trace points... [0s] Sorting trace points... [4.64s] Computing alignments... [124.906s] Deallocating buffers... [0.397s] Loading trace points... [0s] [2056.47s] Deallocating reference... [0.069s] Loading reference sequences... [29.02s] Masking reference... [30.882s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.984s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.005s] Building query seed array... [2.769s] Computing hash join... [6.175s] Masking low complexity seeds... [0.262s] Searching alignments... [1097.89s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.464s] Building query seed array... [3.106s] Computing hash join... [6.217s] Masking low complexity seeds... [0.259s] Searching alignments... [468.269s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.195s] Building query seed array... [3.135s] Computing hash join... [6.189s] Masking low complexity seeds... [0.252s] Searching alignments... [346.164s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.812s] Building query seed array... [2.552s] Computing hash join... [6.181s] Masking low complexity seeds... [0.257s] Searching alignments... [357.856s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.144s] Building query seed array... [2.399s] Computing hash join... [6.25s] Masking low complexity seeds... [0.237s] Searching alignments... [508.58s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.435s] Building query seed array... [2.843s] Computing hash join... [6.472s] Masking low complexity seeds... [0.255s] Searching alignments... [383.937s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.431s] Building query seed array... [2.848s] Computing hash join... [6.255s] Masking low complexity seeds... [0.254s] Searching alignments... [286.173s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.867s] Building query seed array... [2.386s] Computing hash join... [6.102s] Masking low complexity seeds... [0.238s] Searching alignments... [295.707s] Deallocating memory... [0s] Deallocating buffers... [0.286s] Clearing query masking... [1.801s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.053s] Sorting trace points... [4.142s] Computing alignments... [125.994s] Deallocating buffers... [0.21s] Loading trace points... [0.09s] Sorting trace points... [4.464s] Computing alignments... [128.915s] Deallocating buffers... [0.733s] Loading trace points... [0.077s] Sorting trace points... [4.459s] Computing alignments... [127.241s] Deallocating buffers... [0.35s] Loading trace points... [0.983s] Sorting trace points... [5.313s] Computing alignments... [133.627s] Deallocating buffers... [0.422s] Loading trace points... [0.055s] Sorting trace points... [4.272s] Computing alignments... [125.428s] Deallocating buffers... [0.46s] Loading trace points... [0.084s] Sorting trace points... [4.16s] Computing alignments... [127.272s] Deallocating buffers... [0.399s] Loading trace points... [0.002s] Sorting trace points... [5.08s] Computing alignments... [127.779s] Deallocating buffers... [0.593s] Loading trace points... [0.095s] Sorting trace points... [4.901s] Computing alignments... [133.364s] Deallocating buffers... [0.409s] Loading trace points... [0.103s] Sorting trace points... [3.959s] Computing alignments... [127.526s] Deallocating buffers... [0.602s] Loading trace points... [0.047s] Sorting trace points... [4.77s] Computing alignments... [128.11s] Deallocating buffers... [0.276s] Loading trace points... [0.001s] Sorting trace points... [5.116s] Computing alignments... [128.566s] Deallocating buffers... [0.588s] Loading trace points... [0.047s] Sorting trace points... [5.094s] Computing alignments... [133.944s] Deallocating buffers... [0.826s] Loading trace points... [0.053s] Sorting trace points... [3.566s] Computing alignments... [128.074s] Deallocating buffers... [0.245s] Loading trace points... [0.08s] Sorting trace points... [4.513s] Computing alignments... [128.616s] Deallocating buffers... [0.497s] Loading trace points... [0.049s] Sorting trace points... [4.124s] Computing alignments... [128.329s] Deallocating buffers... [0.385s] Loading trace points... [0s] Sorting trace points... [4.86s] Computing alignments... [132.537s] Deallocating buffers... [0.326s] Loading trace points... [0s] [2170.3s] Deallocating reference... [0.065s] Loading reference sequences... [250.784s] Masking reference... [31.017s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.653s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.07s] Building query seed array... [2.631s] Computing hash join... [5.506s] Masking low complexity seeds... [0.254s] Searching alignments... [1079.33s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.745s] Building query seed array... [3.455s] Computing hash join... [5.739s] Masking low complexity seeds... [0.28s] Searching alignments... [464.198s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.786s] Building query seed array... [3.242s] Computing hash join... [5.762s] Masking low complexity seeds... [0.31s] Searching alignments... [348.936s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.516s] Building query seed array... [2.755s] Computing hash join... [5.634s] Masking low complexity seeds... [0.26s] Searching alignments... [355.683s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.053s] Building query seed array... [2.477s] Computing hash join... [5.574s] Masking low complexity seeds... [0.245s] Searching alignments... [509.696s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.452s] Building query seed array... [2.897s] Computing hash join... [5.59s] Masking low complexity seeds... [0.322s] Searching alignments... [385.68s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.328s] Building query seed array... [3.212s] Computing hash join... [5.484s] Masking low complexity seeds... [0.244s] Searching alignments... [281.54s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.078s] Building query seed array... [2.658s] Computing hash join... [5.573s] Masking low complexity seeds... [0.249s] Searching alignments... [294.497s] Deallocating memory... [0s] Deallocating buffers... [0.735s] Clearing query masking... [1.711s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.063s] Sorting trace points... [4.494s] Computing alignments... [134.321s] Deallocating buffers... [0.388s] Loading trace points... [0.053s] Sorting trace points... [4.229s] Computing alignments... [136.708s] Deallocating buffers... [0.429s] Loading trace points... [0.055s] Sorting trace points... [4.629s] Computing alignments... [136.112s] Deallocating buffers... [0.738s] Loading trace points... [0.062s] Sorting trace points... [3.707s] Computing alignments... [142.002s] Deallocating buffers... [0.474s] Loading trace points... [0.003s] Sorting trace points... [4.614s] Computing alignments... [132.433s] Deallocating buffers... [0.551s] Loading trace points... [0.068s] Sorting trace points... [3.344s] Computing alignments... [135.909s] Deallocating buffers... [0.089s] Loading trace points... [0.067s] Sorting trace points... [4.375s] Computing alignments... [135.957s] Deallocating buffers... [0.579s] Loading trace points... [0.434s] Sorting trace points... [4.153s] Computing alignments... [142.161s] Deallocating buffers... [0.219s] Loading trace points... [0.068s] Sorting trace points... [5.649s] Computing alignments... [134.293s] Deallocating buffers... [0.452s] Loading trace points... [0.061s] Sorting trace points... [4.523s] Computing alignments... [135.244s] Deallocating buffers... [0.322s] Loading trace points... [0.073s] Sorting trace points... [4.072s] Computing alignments... [137.417s] Deallocating buffers... [0.345s] Loading trace points... [0.054s] Sorting trace points... [4.583s] Computing alignments... [142.813s] Deallocating buffers... [0.49s] Loading trace points... [0.1s] Sorting trace points... [4.347s] Computing alignments... [136.197s] Deallocating buffers... [0.331s] Loading trace points... [0.063s] Sorting trace points... [4.852s] Computing alignments... [135.799s] Deallocating buffers... [0.437s] Loading trace points... [0.078s] Sorting trace points... [4.33s] Computing alignments... [136.973s] Deallocating buffers... [0.582s] Loading trace points... [0s] Sorting trace points... [3.855s] Computing alignments... [141.666s] Deallocating buffers... [0.488s] Loading trace points... [0s] [2296.08s] Deallocating reference... [0.067s] Loading reference sequences... [258.076s] Masking reference... [31.111s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.674s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.433s] Building query seed array... [2.542s] Computing hash join... [6.002s] Masking low complexity seeds... [0.258s] Searching alignments... [1081.01s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.324s] Building query seed array... [2.99s] Computing hash join... [6.419s] Masking low complexity seeds... [0.254s] Searching alignments... [459.761s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.942s] Building query seed array... [3.063s] Computing hash join... [6.454s] Masking low complexity seeds... [0.259s] Searching alignments... [341.79s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.946s] Building query seed array... [2.508s] Computing hash join... [6.319s] Masking low complexity seeds... [0.254s] Searching alignments... [351.527s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.103s] Building query seed array... [2.388s] Computing hash join... [6.149s] Masking low complexity seeds... [0.239s] Searching alignments... [505.9s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.988s] Building query seed array... [2.622s] Computing hash join... [6.313s] Masking low complexity seeds... [0.24s] Searching alignments... [382.805s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.987s] Building query seed array... [2.782s] Computing hash join... [6.315s] Masking low complexity seeds... [0.245s] Searching alignments... [285.252s] Deallocating memory... [0.01s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.083s] Building query seed array... [2.419s] Computing hash join... [6.271s] Masking low complexity seeds... [0.24s] Searching alignments... [292.555s] Deallocating memory... [0s] Deallocating buffers... [0.149s] Clearing query masking... [1.91s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [21.355s] Sorting trace points... [4.441s] Computing alignments... [108.875s] Deallocating buffers... [0.05s] Loading trace points... [0.083s] Sorting trace points... [4.746s] Computing alignments... [111.334s] Deallocating buffers... [0.829s] Loading trace points... [0.081s] Sorting trace points... [5.283s] Computing alignments... [111.997s] Deallocating buffers... [0.669s] Loading trace points... [0.045s] Sorting trace points... [4.691s] Computing alignments... [117.93s] Deallocating buffers... [0.401s] Loading trace points... [0.071s] Sorting trace points... [3.778s] Computing alignments... [110.867s] Deallocating buffers... [0.288s] Loading trace points... [0.103s] Sorting trace points... [4.496s] Computing alignments... [111.68s] Deallocating buffers... [0.246s] Loading trace points... [0.094s] Sorting trace points... [3.805s] Computing alignments... [113.056s] Deallocating buffers... [0.298s] Loading trace points... [0.065s] Sorting trace points... [5.088s] Computing alignments... [116.466s] Deallocating buffers... [0.345s] Loading trace points... [0.072s] Sorting trace points... [4.73s] Computing alignments... [112.632s] Deallocating buffers... [0.695s] Loading trace points... [0.051s] Sorting trace points... [4.793s] Computing alignments... [113.265s] Deallocating buffers... [0.203s] Loading trace points... [0.079s] Sorting trace points... [5.294s] Computing alignments... [114.748s] Deallocating buffers... [0.707s] Loading trace points... [0.051s] Sorting trace points... [4.867s] Computing alignments... [117.904s] Deallocating buffers... [0.249s] Loading trace points... [0.078s] Sorting trace points... [4.441s] Computing alignments... [112.561s] Deallocating buffers... [0.581s] Loading trace points... [0.092s] Sorting trace points... [4.253s] Computing alignments... [112.714s] Deallocating buffers... [0.134s] Loading trace points... [0.069s] Sorting trace points... [4.921s] Computing alignments... [114.159s] Deallocating buffers... [0.713s] Loading trace points... [0s] Sorting trace points... [3.761s] Computing alignments... [115.4s] Deallocating buffers... [0.375s] Loading trace points... [0s] [1918.33s] Deallocating reference... [0.065s] Loading reference sequences... [29.334s] Masking reference... [30.881s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.05s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.311s] Building query seed array... [2.567s] Computing hash join... [6.1s] Masking low complexity seeds... [0.253s] Searching alignments... [1078.51s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.608s] Building query seed array... [3.512s] Computing hash join... [5.855s] Masking low complexity seeds... [0.27s] Searching alignments... [468.253s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.52s] Building query seed array... [3.431s] Computing hash join... [6.057s] Masking low complexity seeds... [0.263s] Searching alignments... [339.373s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.391s] Building query seed array... [2.952s] Computing hash join... [5.498s] Masking low complexity seeds... [0.302s] Searching alignments... [351.889s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.363s] Building query seed array... [2.557s] Computing hash join... [5.807s] Masking low complexity seeds... [0.263s] Searching alignments... [509.208s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.393s] Building query seed array... [2.918s] Computing hash join... [5.086s] Masking low complexity seeds... [0.247s] Searching alignments... [385.343s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.284s] Building query seed array... [3.209s] Computing hash join... [5.535s] Masking low complexity seeds... [0.241s] Searching alignments... [284.553s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.664s] Building query seed array... [2.634s] Computing hash join... [5.727s] Masking low complexity seeds... [0.25s] Searching alignments... [295.058s] Deallocating memory... [0s] Deallocating buffers... [1.913s] Clearing query masking... [1.745s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [21.318s] Sorting trace points... [4.338s] Computing alignments... [110.128s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [4.854s] Computing alignments... [113.004s] Deallocating buffers... [0.598s] Loading trace points... [0s] Sorting trace points... [4.802s] Computing alignments... [113.063s] Deallocating buffers... [0.269s] Loading trace points... [0.039s] Sorting trace points... [4.782s] Computing alignments... [119.215s] Deallocating buffers... [0.645s] Loading trace points... [0.075s] Sorting trace points... [4.263s] Computing alignments... [112.45s] Deallocating buffers... [0.7s] Loading trace points... [0.096s] Sorting trace points... [4.275s] Computing alignments... [112.902s] Deallocating buffers... [0.069s] Loading trace points... [0.069s] Sorting trace points... [5.021s] Computing alignments... [114.071s] Deallocating buffers... [0.731s] Loading trace points... [0.064s] Sorting trace points... [4.671s] Computing alignments... [116.833s] Deallocating buffers... [0.11s] Loading trace points... [0.108s] Sorting trace points... [3.883s] Computing alignments... [113.025s] Deallocating buffers... [0.596s] Loading trace points... [0.075s] Sorting trace points... [5.121s] Computing alignments... [114.298s] Deallocating buffers... [1.046s] Loading trace points... [0.04s] Sorting trace points... [4.558s] Computing alignments... [115.323s] Deallocating buffers... [0.065s] Loading trace points... [0.082s] Sorting trace points... [4.387s] Computing alignments... [118.479s] Deallocating buffers... [0.728s] Loading trace points... [0.046s] Sorting trace points... [4.314s] Computing alignments... [113.351s] Deallocating buffers... [0.079s] Loading trace points... [0.097s] Sorting trace points... [4.204s] Computing alignments... [114.1s] Deallocating buffers... [0.557s] Loading trace points... [0.071s] Sorting trace points... [5.047s] Computing alignments... [115.321s] Deallocating buffers... [0.159s] Loading trace points... [0s] Sorting trace points... [4.048s] Computing alignments... [115.972s] Deallocating buffers... [0.608s] Loading trace points... [0s] [1933.48s] Deallocating reference... [0.074s] Loading reference sequences... [29.138s] Masking reference... [30.929s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.304s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.367s] Building query seed array... [2.805s] Computing hash join... [5.739s] Masking low complexity seeds... [0.257s] Searching alignments... [1083.21s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.59s] Building query seed array... [3.215s] Computing hash join... [5.945s] Masking low complexity seeds... [0.241s] Searching alignments... [465.243s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.051s] Building query seed array... [3.46s] Computing hash join... [5.715s] Masking low complexity seeds... [0.252s] Searching alignments... [346.441s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.284s] Building query seed array... [2.647s] Computing hash join... [5.815s] Masking low complexity seeds... [0.254s] Searching alignments... [354.527s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.012s] Building query seed array... [2.527s] Computing hash join... [5.636s] Masking low complexity seeds... [0.258s] Searching alignments... [507.337s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.091s] Building query seed array... [2.749s] Computing hash join... [5.932s] Masking low complexity seeds... [0.258s] Searching alignments... [379.865s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.246s] Building query seed array... [3.015s] Computing hash join... [5.913s] Masking low complexity seeds... [0.242s] Searching alignments... [280.207s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.967s] Building query seed array... [2.512s] Computing hash join... [5.947s] Masking low complexity seeds... [0.24s] Searching alignments... [295.935s] Deallocating memory... [0s] Deallocating buffers... [0.828s] Clearing query masking... [1.719s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.124s] Sorting trace points... [4.325s] Computing alignments... [107.388s] Deallocating buffers... [0.268s] Loading trace points... [0.058s] Sorting trace points... [5.024s] Computing alignments... [108.696s] Deallocating buffers... [0.425s] Loading trace points... [0.057s] Sorting trace points... [5.149s] Computing alignments... [109.186s] Deallocating buffers... [0.891s] Loading trace points... [0.525s] Sorting trace points... [4.607s] Computing alignments... [114.405s] Deallocating buffers... [0.302s] Loading trace points... [0.785s] Sorting trace points... [5.042s] Computing alignments... [107.533s] Deallocating buffers... [0.781s] Loading trace points... [0.07s] Sorting trace points... [3.765s] Computing alignments... [108.261s] Deallocating buffers... [0.345s] Loading trace points... [0.082s] Sorting trace points... [4.44s] Computing alignments... [109.134s] Deallocating buffers... [0.337s] Loading trace points... [0.051s] Sorting trace points... [4.484s] Computing alignments... [112.718s] Deallocating buffers... [0.507s] Loading trace points... [0.051s] Sorting trace points... [3.834s] Computing alignments... [108.458s] Deallocating buffers... [0.32s] Loading trace points... [0.08s] Sorting trace points... [5.202s] Computing alignments... [109.215s] Deallocating buffers... [0.934s] Loading trace points... [0.069s] Sorting trace points... [4.294s] Computing alignments... [110.028s] Deallocating buffers... [0.139s] Loading trace points... [0.001s] Sorting trace points... [5.08s] Computing alignments... [113.172s] Deallocating buffers... [0.743s] Loading trace points... [0.081s] Sorting trace points... [5.299s] Computing alignments... [108.648s] Deallocating buffers... [0.904s] Loading trace points... [0.066s] Sorting trace points... [4.3s] Computing alignments... [108.938s] Deallocating buffers... [0.064s] Loading trace points... [0.077s] Sorting trace points... [4.862s] Computing alignments... [110.101s] Deallocating buffers... [0.699s] Loading trace points... [0s] Sorting trace points... [4.58s] Computing alignments... [110.901s] Deallocating buffers... [0.207s] Loading trace points... [0s] [1863.23s] Deallocating reference... [0.061s] Loading reference sequences... [30.197s] Masking reference... [31.536s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.426s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.886s] Building query seed array... [2.63s] Computing hash join... [6.082s] Masking low complexity seeds... [0.269s] Searching alignments... [1099.62s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.87s] Building query seed array... [3.305s] Computing hash join... [5.763s] Masking low complexity seeds... [0.266s] Searching alignments... [470.976s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.674s] Building query seed array... [3.466s] Computing hash join... [5.725s] Masking low complexity seeds... [0.27s] Searching alignments... [350.376s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.128s] Building query seed array... [2.695s] Computing hash join... [5.629s] Masking low complexity seeds... [0.274s] Searching alignments... [351.533s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.244s] Building query seed array... [2.524s] Computing hash join... [5.402s] Masking low complexity seeds... [0.256s] Searching alignments... [522.266s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.603s] Building query seed array... [2.927s] Computing hash join... [6.015s] Masking low complexity seeds... [0.271s] Searching alignments... [387.8s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.937s] Building query seed array... [3.003s] Computing hash join... [5.9s] Masking low complexity seeds... [0.244s] Searching alignments... [286.171s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.201s] Building query seed array... [2.569s] Computing hash join... [5.564s] Masking low complexity seeds... [0.245s] Searching alignments... [295.657s] Deallocating memory... [0s] Deallocating buffers... [1.519s] Clearing query masking... [1.713s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [21.673s] Sorting trace points... [4.589s] Computing alignments... [128.315s] Deallocating buffers... [0.247s] Loading trace points... [0.049s] Sorting trace points... [4.881s] Computing alignments... [129.812s] Deallocating buffers... [0.711s] Loading trace points... [0.072s] Sorting trace points... [4.283s] Computing alignments... [130.84s] Deallocating buffers... [0.548s] Loading trace points... [0.121s] Sorting trace points... [4.181s] Computing alignments... [136.841s] Deallocating buffers... [0.486s] Loading trace points... [0.057s] Sorting trace points... [4.573s] Computing alignments... [127.197s] Deallocating buffers... [0.632s] Loading trace points... [0.035s] Sorting trace points... [4.509s] Computing alignments... [129.571s] Deallocating buffers... [0.62s] Loading trace points... [0.052s] Sorting trace points... [3.503s] Computing alignments... [130.532s] Deallocating buffers... [0.097s] Loading trace points... [0.096s] Sorting trace points... [4.91s] Computing alignments... [136.331s] Deallocating buffers... [0.705s] Loading trace points... [0.041s] Sorting trace points... [4.022s] Computing alignments... [129.673s] Deallocating buffers... [0.239s] Loading trace points... [0.059s] Sorting trace points... [4.358s] Computing alignments... [130.541s] Deallocating buffers... [0.555s] Loading trace points... [0.043s] Sorting trace points... [3.837s] Computing alignments... [132.099s] Deallocating buffers... [0.233s] Loading trace points... [0.067s] Sorting trace points... [4.644s] Computing alignments... [137.203s] Deallocating buffers... [0.624s] Loading trace points... [0.045s] Sorting trace points... [3.965s] Computing alignments... [131.091s] Deallocating buffers... [0.213s] Loading trace points... [0.002s] Sorting trace points... [4.171s] Computing alignments... [131.114s] Deallocating buffers... [0.511s] Loading trace points... [0.06s] Sorting trace points... [4.872s] Computing alignments... [131.24s] Deallocating buffers... [0.706s] Loading trace points... [0s] Sorting trace points... [4.966s] Computing alignments... [135.583s] Deallocating buffers... [0.412s] Loading trace points... [0s] [2208.4s] Deallocating reference... [0.063s] Loading reference sequences... [29.31s] Masking reference... [30.933s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.727s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.202s] Building query seed array... [2.663s] Computing hash join... [5.616s] Masking low complexity seeds... [0.255s] Searching alignments... [1092.98s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.548s] Building query seed array... [3.318s] Computing hash join... [5.547s] Masking low complexity seeds... [0.244s] Searching alignments... [463.856s] Deallocating memory... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.635s] Building query seed array... [3.509s] Computing hash join... [6.009s] Masking low complexity seeds... [0.259s] Searching alignments... [342.149s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.916s] Building query seed array... [2.743s] Computing hash join... [5.602s] Masking low complexity seeds... [0.247s] Searching alignments... [350.685s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.207s] Building query seed array... [2.621s] Computing hash join... [5.355s] Masking low complexity seeds... [0.242s] Searching alignments... [507.246s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.295s] Building query seed array... [2.914s] Computing hash join... [5.573s] Masking low complexity seeds... [0.247s] Searching alignments... [384.771s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.798s] Building query seed array... [3.137s] Computing hash join... [5.83s] Masking low complexity seeds... [0.238s] Searching alignments... [283.2s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.154s] Building query seed array... [2.722s] Computing hash join... [5.876s] Masking low complexity seeds... [0.308s] Searching alignments... [294.003s] Deallocating memory... [0s] Deallocating buffers... [0.803s] Clearing query masking... [1.723s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [21.988s] Sorting trace points... [4.494s] Computing alignments... [104.228s] Deallocating buffers... [0.258s] Loading trace points... [0.069s] Sorting trace points... [4.515s] Computing alignments... [105.452s] Deallocating buffers... [0.617s] Loading trace points... [0.068s] Sorting trace points... [4.211s] Computing alignments... [105.595s] Deallocating buffers... [0.608s] Loading trace points... [0.04s] Sorting trace points... [5.311s] Computing alignments... [110.703s] Deallocating buffers... [0.92s] Loading trace points... [0.055s] Sorting trace points... [4.158s] Computing alignments... [104.013s] Deallocating buffers... [0.305s] Loading trace points... [0.064s] Sorting trace points... [4.663s] Computing alignments... [104.748s] Deallocating buffers... [0.59s] Loading trace points... [0.105s] Sorting trace points... [4.488s] Computing alignments... [106.132s] Deallocating buffers... [0.588s] Loading trace points... [0.084s] Sorting trace points... [5.53s] Computing alignments... [109.048s] Deallocating buffers... [0.143s] Loading trace points... [0.082s] Sorting trace points... [4.437s] Computing alignments... [105.999s] Deallocating buffers... [0.589s] Loading trace points... [0.06s] Sorting trace points... [4.566s] Computing alignments... [106.759s] Deallocating buffers... [0.451s] Loading trace points... [0.07s] Sorting trace points... [4.837s] Computing alignments... [107.582s] Deallocating buffers... [0.551s] Loading trace points... [0.06s] Sorting trace points... [5.686s] Computing alignments... [110.146s] Deallocating buffers... [0.367s] Loading trace points... [0.884s] Sorting trace points... [4.942s] Computing alignments... [105.728s] Deallocating buffers... [0.715s] Loading trace points... [0.084s] Sorting trace points... [4.177s] Computing alignments... [106.867s] Deallocating buffers... [0.352s] Loading trace points... [0.074s] Sorting trace points... [4.694s] Computing alignments... [107.73s] Deallocating buffers... [0.475s] Loading trace points... [0s] Sorting trace points... [4.231s] Computing alignments... [108.809s] Deallocating buffers... [0.418s] Loading trace points... [0s] [1816.36s] Deallocating reference... [0.065s] Loading reference sequences... [30.456s] Masking reference... [31.259s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.605s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.104s] Building query seed array... [2.624s] Computing hash join... [5.63s] Masking low complexity seeds... [0.288s] Searching alignments... [1084.81s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.159s] Building query seed array... [3.605s] Computing hash join... [6.152s] Masking low complexity seeds... [0.262s] Searching alignments... [467.662s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.276s] Building query seed array... [3.59s] Computing hash join... [5.693s] Masking low complexity seeds... [0.247s] Searching alignments... [345.047s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.201s] Building query seed array... [2.8s] Computing hash join... [5.809s] Masking low complexity seeds... [0.256s] Searching alignments... [357.772s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.213s] Building query seed array... [2.547s] Computing hash join... [5.668s] Masking low complexity seeds... [0.304s] Searching alignments... [508.092s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.072s] Building query seed array... [2.964s] Computing hash join... [5.703s] Masking low complexity seeds... [0.307s] Searching alignments... [384.507s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.441s] Building query seed array... [3.234s] Computing hash join... [5.678s] Masking low complexity seeds... [0.234s] Searching alignments... [285.414s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.998s] Building query seed array... [2.497s] Computing hash join... [5.814s] Masking low complexity seeds... [0.271s] Searching alignments... [296.413s] Deallocating memory... [0s] Deallocating buffers... [0.795s] Clearing query masking... [1.75s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.383s] Sorting trace points... [4.53s] Computing alignments... [132.171s] Deallocating buffers... [0.39s] Loading trace points... [0.06s] Sorting trace points... [4.856s] Computing alignments... [135.094s] Deallocating buffers... [0.912s] Loading trace points... [0.208s] Sorting trace points... [5.002s] Computing alignments... [136.256s] Deallocating buffers... [0.635s] Loading trace points... [0.069s] Sorting trace points... [6.564s] Computing alignments... [142.317s] Deallocating buffers... [1.204s] Loading trace points... [0.078s] Sorting trace points... [4.843s] Computing alignments... [132.443s] Deallocating buffers... [0.577s] Loading trace points... [0.065s] Sorting trace points... [5.423s] Computing alignments... [134.603s] Deallocating buffers... [1.047s] Loading trace points... [0.082s] Sorting trace points... [5.785s] Computing alignments... [135.139s] Deallocating buffers... [0.806s] Loading trace points... [0.074s] Sorting trace points... [5.06s] Computing alignments... [140.932s] Deallocating buffers... [0.939s] Loading trace points... [0.061s] Sorting trace points... [4.741s] Computing alignments... [133.67s] Deallocating buffers... [0.685s] Loading trace points... [0.074s] Sorting trace points... [4.92s] Computing alignments... [133.742s] Deallocating buffers... [0.229s] Loading trace points... [0.083s] Sorting trace points... [5.216s] Computing alignments... [136.45s] Deallocating buffers... [0.881s] Loading trace points... [0.041s] Sorting trace points... [5.031s] Computing alignments... [140.791s] Deallocating buffers... [0.801s] Loading trace points... [0.085s] Sorting trace points... [6.077s] Computing alignments... [135.089s] Deallocating buffers... [1.2s] Loading trace points... [0.102s] Sorting trace points... [5.045s] Computing alignments... [135.142s] Deallocating buffers... [0.85s] Loading trace points... [0.067s] Sorting trace points... [4.054s] Computing alignments... [134.985s] Deallocating buffers... [0.223s] Loading trace points... [0s] Sorting trace points... [4.666s] Computing alignments... [139.548s] Deallocating buffers... [0.756s] Loading trace points... [0s] [2296.41s] Deallocating reference... [0.075s] Loading reference sequences... [251.073s] Masking reference... [31.175s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.618s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.075s] Building query seed array... [2.696s] Computing hash join... [5.931s] Masking low complexity seeds... [0.248s] Searching alignments... [1092.82s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.319s] Building query seed array... [3.293s] Computing hash join... [6.15s] Masking low complexity seeds... [0.249s] Searching alignments... [465.109s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.289s] Building query seed array... [3.246s] Computing hash join... [6.886s] Masking low complexity seeds... [0.267s] Searching alignments... [350.002s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.237s] Building query seed array... [2.669s] Computing hash join... [6.442s] Masking low complexity seeds... [0.253s] Searching alignments... [354.603s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.862s] Building query seed array... [2.542s] Computing hash join... [6.238s] Masking low complexity seeds... [0.235s] Searching alignments... [505.779s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.897s] Building query seed array... [2.887s] Computing hash join... [6.38s] Masking low complexity seeds... [0.266s] Searching alignments... [386.206s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.328s] Building query seed array... [3.066s] Computing hash join... [6.62s] Masking low complexity seeds... [0.257s] Searching alignments... [284.032s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.847s] Building query seed array... [2.53s] Computing hash join... [6.427s] Masking low complexity seeds... [0.296s] Searching alignments... [297.822s] Deallocating memory... [0s] Deallocating buffers... [0.613s] Clearing query masking... [1.992s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.02s] Sorting trace points... [4.3s] Computing alignments... [131.493s] Deallocating buffers... [0.191s] Loading trace points... [0.054s] Sorting trace points... [4.318s] Computing alignments... [132.955s] Deallocating buffers... [0.714s] Loading trace points... [0.056s] Sorting trace points... [4.255s] Computing alignments... [134.702s] Deallocating buffers... [0.435s] Loading trace points... [0.054s] Sorting trace points... [5.229s] Computing alignments... [138.853s] Deallocating buffers... [0.467s] Loading trace points... [0.081s] Sorting trace points... [4.434s] Computing alignments... [129.574s] Deallocating buffers... [0.443s] Loading trace points... [0.05s] Sorting trace points... [3.649s] Computing alignments... [132.978s] Deallocating buffers... [0.306s] Loading trace points... [0.05s] Sorting trace points... [4.48s] Computing alignments... [131.519s] Deallocating buffers... [0.492s] Loading trace points... [0.001s] Sorting trace points... [5.341s] Computing alignments... [139.195s] Deallocating buffers... [0.526s] Loading trace points... [0.053s] Sorting trace points... [3.781s] Computing alignments... [131.908s] Deallocating buffers... [0.384s] Loading trace points... [0.075s] Sorting trace points... [4.791s] Computing alignments... [132.852s] Deallocating buffers... [0.556s] Loading trace points... [0.055s] Sorting trace points... [4.228s] Computing alignments... [134.308s] Deallocating buffers... [0.338s] Loading trace points... [0.095s] Sorting trace points... [4.818s] Computing alignments... [140.623s] Deallocating buffers... [0.54s] Loading trace points... [0.057s] Sorting trace points... [3.999s] Computing alignments... [134.118s] Deallocating buffers... [0.362s] Loading trace points... [0.038s] Sorting trace points... [4.202s] Computing alignments... [133.307s] Deallocating buffers... [0.622s] Loading trace points... [0.073s] Sorting trace points... [4.068s] Computing alignments... [133.526s] Deallocating buffers... [0.34s] Loading trace points... [0s] Sorting trace points... [4.179s] Computing alignments... [139.714s] Deallocating buffers... [0.683s] Loading trace points... [0s] [2252.05s] Deallocating reference... [0.073s] Loading reference sequences... [31.197s] Masking reference... [30.886s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [33.09s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.33s] Building query seed array... [2.67s] Computing hash join... [5.788s] Masking low complexity seeds... [0.263s] Searching alignments... [1096.12s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.278s] Building query seed array... [3.606s] Computing hash join... [5.732s] Masking low complexity seeds... [0.247s] Searching alignments... [466.235s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.67s] Building query seed array... [3.446s] Computing hash join... [5.778s] Masking low complexity seeds... [0.253s] Searching alignments... [349.297s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.205s] Building query seed array... [2.782s] Computing hash join... [5.794s] Masking low complexity seeds... [0.254s] Searching alignments... [354.366s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.016s] Building query seed array... [2.562s] Computing hash join... [5.585s] Masking low complexity seeds... [0.238s] Searching alignments... [508.47s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.398s] Building query seed array... [2.923s] Computing hash join... [5.574s] Masking low complexity seeds... [0.246s] Searching alignments... [384.227s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.017s] Building query seed array... [3.115s] Computing hash join... [5.878s] Masking low complexity seeds... [0.284s] Searching alignments... [287.495s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.061s] Building query seed array... [2.621s] Computing hash join... [5.537s] Masking low complexity seeds... [0.239s] Searching alignments... [295.279s] Deallocating memory... [0s] Deallocating buffers... [0.809s] Clearing query masking... [1.767s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [21.49s] Sorting trace points... [4.284s] Computing alignments... [126.28s] Deallocating buffers... [0.162s] Loading trace points... [0.079s] Sorting trace points... [4.78s] Computing alignments... [128.693s] Deallocating buffers... [0.671s] Loading trace points... [0.047s] Sorting trace points... [3.623s] Computing alignments... [129.232s] Deallocating buffers... [0.135s] Loading trace points... [0.071s] Sorting trace points... [4.552s] Computing alignments... [135.227s] Deallocating buffers... [0.649s] Loading trace points... [0.066s] Sorting trace points... [4.639s] Computing alignments... [124.958s] Deallocating buffers... [0.796s] Loading trace points... [0.132s] Sorting trace points... [3.89s] Computing alignments... [128.171s] Deallocating buffers... [0.076s] Loading trace points... [0.069s] Sorting trace points... [4.382s] Computing alignments... [127.628s] Deallocating buffers... [0.721s] Loading trace points... [0.103s] Sorting trace points... [4.763s] Computing alignments... [133.47s] Deallocating buffers... [0.804s] Loading trace points... [0.001s] Sorting trace points... [5.358s] Computing alignments... [127.444s] Deallocating buffers... [0.916s] Loading trace points... [0.053s] Sorting trace points... [4.57s] Computing alignments... [128.169s] Deallocating buffers... [0.27s] Loading trace points... [0.047s] Sorting trace points... [3.551s] Computing alignments... [129.898s] Deallocating buffers... [0.524s] Loading trace points... [0.059s] Sorting trace points... [4.546s] Computing alignments... [133.96s] Deallocating buffers... [0.411s] Loading trace points... [0.086s] Sorting trace points... [4.608s] Computing alignments... [128.876s] Deallocating buffers... [0.59s] Loading trace points... [0.081s] Sorting trace points... [5.05s] Computing alignments... [128.792s] Deallocating buffers... [0.409s] Loading trace points... [0.106s] Sorting trace points... [4.971s] Computing alignments... [129.534s] Deallocating buffers... [0.743s] Loading trace points... [0s] Sorting trace points... [4.744s] Computing alignments... [133.108s] Deallocating buffers... [0.869s] Loading trace points... [0s] [2177.12s] Deallocating reference... [0.072s] Loading reference sequences... [23.211s] Masking reference... [26.077s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.005s] Building reference histograms... [25.947s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.172s] Building query seed array... [2.638s] Computing hash join... [4.96s] Masking low complexity seeds... [0.241s] Searching alignments... [869.922s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.54s] Building query seed array... [3.605s] Computing hash join... [4.798s] Masking low complexity seeds... [0.252s] Searching alignments... [375.801s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.402s] Building query seed array... [3.301s] Computing hash join... [5.176s] Masking low complexity seeds... [0.271s] Searching alignments... [279.173s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.739s] Building query seed array... [2.748s] Computing hash join... [4.411s] Masking low complexity seeds... [0.233s] Searching alignments... [283.224s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.438s] Building query seed array... [2.551s] Computing hash join... [4.773s] Masking low complexity seeds... [0.234s] Searching alignments... [410.935s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.019s] Building query seed array... [2.881s] Computing hash join... [4.083s] Masking low complexity seeds... [0.225s] Searching alignments... [304.898s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.152s] Building query seed array... [3.132s] Computing hash join... [4.63s] Masking low complexity seeds... [0.227s] Searching alignments... [228.703s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.127s] Building query seed array... [2.582s] Computing hash join... [4.698s] Masking low complexity seeds... [0.24s] Searching alignments... [234.503s] Deallocating memory... [0.005s] Deallocating buffers... [0.946s] Clearing query masking... [1.889s] Opening temporary output file... [0.022s] Computing alignments... Loading trace points... [17.52s] Sorting trace points... [3.489s] Computing alignments... [96.54s] Deallocating buffers... [0.066s] Loading trace points... [0.105s] Sorting trace points... [4.054s] Computing alignments... [98.405s] Deallocating buffers... [0.668s] Loading trace points... [0.048s] Sorting trace points... [3.188s] Computing alignments... [98.794s] Deallocating buffers... [0.05s] Loading trace points... [0.057s] Sorting trace points... [3.78s] Computing alignments... [103.869s] Deallocating buffers... [0.453s] Loading trace points... [0.075s] Sorting trace points... [3.141s] Computing alignments... [95.67s] Deallocating buffers... [0.23s] Loading trace points... [0.093s] Sorting trace points... [3.797s] Computing alignments... [98.162s] Deallocating buffers... [0.232s] Loading trace points... [0.078s] Sorting trace points... [3.94s] Computing alignments... [98.546s] Deallocating buffers... [0.352s] Loading trace points... [0.087s] Sorting trace points... [3.592s] Computing alignments... [103.329s] Deallocating buffers... [0.548s] Loading trace points... [0.091s] Sorting trace points... [4.047s] Computing alignments... [98.326s] Deallocating buffers... [0.44s] Loading trace points... [0.092s] Sorting trace points... [3.682s] Computing alignments... [97.939s] Deallocating buffers... [0.664s] Loading trace points... [0.063s] Sorting trace points... [3.649s] Computing alignments... [99.661s] Deallocating buffers... [0.051s] Loading trace points... [0.065s] Sorting trace points... [3.433s] Computing alignments... [102.252s] Deallocating buffers... [0.335s] Loading trace points... [0.09s] Sorting trace points... [3.475s] Computing alignments... [98.234s] Deallocating buffers... [0.042s] Loading trace points... [0.048s] Sorting trace points... [3.669s] Computing alignments... [98.395s] Deallocating buffers... [0.454s] Loading trace points... [0.041s] Sorting trace points... [2.954s] Computing alignments... [98.789s] Deallocating buffers... [0.166s] Loading trace points... [0s] Sorting trace points... [3.771s] Computing alignments... [101.598s] Deallocating buffers... [0.178s] Loading trace points... [0s] [1669.81s] Deallocating reference... [0.062s] Loading reference sequences... [0.097s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [6593.58s] [6593.58s] Deallocating queries... [0.098s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.836s] [3.614s] Closing the database... [0s] Cleaning up... [0s] Total time = 91217.5s Reported 7436281666 pairwise alignments, 7436281666 HSPs. 6231795 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-14.trimmed.R1.fastq.gz complete: CH05-14.trimmed.R1.blastx.meganized.daa Now MEGANizing CH05-14.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-14.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (315.5s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12,255.8s) Total reads: 6,231,795 With hits: 6,231,795 Alignments: 5,591,469,812 Assig. Taxonomy: 4,008,477 Assig. SEED: 97,253 Assig. EGGNOG: 18,059 Assig. GTDB: 200,182 Assig. EC: 698,684 Assig. INTERPRO2GO: 1,890,005 MinSupport set to: 3115 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 5,239 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (25.8s) Min-supp. changes: 3,296 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7.0s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 163 Class. SEED: 480 Class. EGGNOG: 1,464 Class. GTDB: 46 Class. EC: 2,267 Class. INTERPRO2GO: 8,673 Total time: 12,614s Peak memory: 37 of 195.3G MEGANization of CH05-14.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-14.trimmed.R2.fastq.gz... c04e143e37de32e2560e9f7a5f302550 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-14.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-14.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.291s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.868s] Opening the output file... [0s] Loading query sequences... [115.13s] Masking queries... [29.463s] Algorithm: Double-indexed Building query histograms... [26.326s] Loading reference sequences... [28.851s] Masking reference... [32.103s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.5s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.351s] Building query seed array... [2.62s] Computing hash join... [6.876s] Masking low complexity seeds... [0.257s] Searching alignments... [1145.28s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.678s] Building query seed array... [3.485s] Computing hash join... [5.589s] Masking low complexity seeds... [0.267s] Searching alignments... [483.285s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.675s] Building query seed array... [3.254s] Computing hash join... [5.447s] Masking low complexity seeds... [0.25s] Searching alignments... [357.352s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.705s] Building query seed array... [2.797s] Computing hash join... [5.64s] Masking low complexity seeds... [0.256s] Searching alignments... [360.468s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.506s] Building query seed array... [2.667s] Computing hash join... [5.443s] Masking low complexity seeds... [0.252s] Searching alignments... [543.451s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.779s] Building query seed array... [2.82s] Computing hash join... [4.938s] Masking low complexity seeds... [0.257s] Searching alignments... [407.4s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.02s] Building query seed array... [3.069s] Computing hash join... [5.661s] Masking low complexity seeds... [0.259s] Searching alignments... [301.546s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.399s] Building query seed array... [2.694s] Computing hash join... [5.675s] Masking low complexity seeds... [0.24s] Searching alignments... [315.661s] Deallocating memory... [0s] Deallocating buffers... [1.631s] Clearing query masking... [1.696s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.08s] Sorting trace points... [4.457s] Computing alignments... [115.446s] Deallocating buffers... [0.054s] Loading trace points... [0.056s] Sorting trace points... [5.193s] Computing alignments... [117.603s] Deallocating buffers... [0.684s] Loading trace points... [0.07s] Sorting trace points... [4.367s] Computing alignments... [115.831s] Deallocating buffers... [0.73s] Loading trace points... [0.078s] Sorting trace points... [4.131s] Computing alignments... [119.529s] Deallocating buffers... [0.057s] Loading trace points... [0.067s] Sorting trace points... [5.093s] Computing alignments... [116.15s] Deallocating buffers... [0.794s] Loading trace points... [0.094s] Sorting trace points... [4.933s] Computing alignments... [115.023s] Deallocating buffers... [0.697s] Loading trace points... [0.049s] Sorting trace points... [6.155s] Computing alignments... [116.836s] Deallocating buffers... [1.028s] Loading trace points... [0.052s] Sorting trace points... [6.3s] Computing alignments... [118.285s] Deallocating buffers... [0.868s] Loading trace points... [0.062s] Sorting trace points... [5.434s] Computing alignments... [115.398s] Deallocating buffers... [0.964s] Loading trace points... [0.065s] Sorting trace points... [4.395s] Computing alignments... [116.494s] Deallocating buffers... [0.078s] Loading trace points... [0.668s] Sorting trace points... [5.023s] Computing alignments... [117.266s] Deallocating buffers... [0.619s] Loading trace points... [0.075s] Sorting trace points... [4.9s] Computing alignments... [119.05s] Deallocating buffers... [0.143s] Loading trace points... [0.066s] Sorting trace points... [5.349s] Computing alignments... [116.474s] Deallocating buffers... [0.848s] Loading trace points... [0.07s] Sorting trace points... [4.912s] Computing alignments... [117.321s] Deallocating buffers... [0.713s] Loading trace points... [0.001s] Sorting trace points... [4.356s] Computing alignments... [114.866s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [3.696s] Computing alignments... [114.125s] Deallocating buffers... [0.451s] Loading trace points... [0s] [1976.87s] Deallocating reference... [0.06s] Loading reference sequences... [33.877s] Masking reference... [30.85s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.007s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.138s] Building query seed array... [2.7s] Computing hash join... [5.681s] Masking low complexity seeds... [0.256s] Searching alignments... [1131.52s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.666s] Building query seed array... [3.545s] Computing hash join... [5.642s] Masking low complexity seeds... [0.247s] Searching alignments... [477.257s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.612s] Building query seed array... [3.323s] Computing hash join... [5.64s] Masking low complexity seeds... [0.256s] Searching alignments... [354.717s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.926s] Building query seed array... [2.653s] Computing hash join... [5.666s] Masking low complexity seeds... [0.257s] Searching alignments... [355.71s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.083s] Building query seed array... [2.7s] Computing hash join... [5.478s] Masking low complexity seeds... [0.249s] Searching alignments... [531.92s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.817s] Building query seed array... [2.908s] Computing hash join... [5.744s] Masking low complexity seeds... [0.248s] Searching alignments... [398.38s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.629s] Building query seed array... [3.11s] Computing hash join... [5.384s] Masking low complexity seeds... [0.237s] Searching alignments... [295.863s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.896s] Building query seed array... [2.562s] Computing hash join... [5.315s] Masking low complexity seeds... [0.229s] Searching alignments... [310.451s] Deallocating memory... [0s] Deallocating buffers... [0.695s] Clearing query masking... [1.689s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.639s] Sorting trace points... [4.433s] Computing alignments... [126.153s] Deallocating buffers... [0.442s] Loading trace points... [0.078s] Sorting trace points... [4.623s] Computing alignments... [128.953s] Deallocating buffers... [0.282s] Loading trace points... [0.067s] Sorting trace points... [4.793s] Computing alignments... [127.306s] Deallocating buffers... [0.328s] Loading trace points... [0.074s] Sorting trace points... [5.589s] Computing alignments... [131.823s] Deallocating buffers... [0.393s] Loading trace points... [0.064s] Sorting trace points... [3.939s] Computing alignments... [125.993s] Deallocating buffers... [0.368s] Loading trace points... [0.111s] Sorting trace points... [5.44s] Computing alignments... [125.905s] Deallocating buffers... [0.909s] Loading trace points... [0.073s] Sorting trace points... [4.798s] Computing alignments... [125.873s] Deallocating buffers... [0.199s] Loading trace points... [0.107s] Sorting trace points... [5.208s] Computing alignments... [128.938s] Deallocating buffers... [0.685s] Loading trace points... [0.079s] Sorting trace points... [3.911s] Computing alignments... [126.205s] Deallocating buffers... [0.56s] Loading trace points... [0.052s] Sorting trace points... [4.532s] Computing alignments... [127.151s] Deallocating buffers... [0.336s] Loading trace points... [0.071s] Sorting trace points... [3.509s] Computing alignments... [127.608s] Deallocating buffers... [0.23s] Loading trace points... [0.061s] Sorting trace points... [5.529s] Computing alignments... [129.662s] Deallocating buffers... [1.115s] Loading trace points... [0.046s] Sorting trace points... [4.129s] Computing alignments... [124.344s] Deallocating buffers... [0.08s] Loading trace points... [0.09s] Sorting trace points... [4.734s] Computing alignments... [127.159s] Deallocating buffers... [0.656s] Loading trace points... [0.073s] Sorting trace points... [3.99s] Computing alignments... [123.272s] Deallocating buffers... [0.339s] Loading trace points... [0s] Sorting trace points... [4.47s] Computing alignments... [123.145s] Deallocating buffers... [0.71s] Loading trace points... [0s] [2134.56s] Deallocating reference... [0.088s] Loading reference sequences... [29.172s] Masking reference... [30.889s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.563s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.026s] Building query seed array... [2.636s] Computing hash join... [5.578s] Masking low complexity seeds... [0.25s] Searching alignments... [1148.74s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.404s] Building query seed array... [3.563s] Computing hash join... [5.485s] Masking low complexity seeds... [0.249s] Searching alignments... [485.598s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.241s] Building query seed array... [3.34s] Computing hash join... [5.536s] Masking low complexity seeds... [0.245s] Searching alignments... [357.612s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.094s] Building query seed array... [2.747s] Computing hash join... [5.399s] Masking low complexity seeds... [0.247s] Searching alignments... [358.03s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.971s] Building query seed array... [2.555s] Computing hash join... [5.496s] Masking low complexity seeds... [0.238s] Searching alignments... [539s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.357s] Building query seed array... [2.953s] Computing hash join... [5.491s] Masking low complexity seeds... [0.238s] Searching alignments... [402.574s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.707s] Building query seed array... [3.08s] Computing hash join... [5.392s] Masking low complexity seeds... [0.236s] Searching alignments... [296.441s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.807s] Building query seed array... [2.619s] Computing hash join... [5.354s] Masking low complexity seeds... [0.231s] Searching alignments... [314.106s] Deallocating memory... [0s] Deallocating buffers... [0.735s] Clearing query masking... [1.707s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [21.961s] Sorting trace points... [4.421s] Computing alignments... [121.272s] Deallocating buffers... [0.076s] Loading trace points... [0.048s] Sorting trace points... [4.347s] Computing alignments... [125.379s] Deallocating buffers... [0.549s] Loading trace points... [0.058s] Sorting trace points... [4.353s] Computing alignments... [123.382s] Deallocating buffers... [0.66s] Loading trace points... [0.067s] Sorting trace points... [3.781s] Computing alignments... [127.77s] Deallocating buffers... [0.201s] Loading trace points... [0.076s] Sorting trace points... [4.134s] Computing alignments... [122.64s] Deallocating buffers... [0.72s] Loading trace points... [0.06s] Sorting trace points... [3.505s] Computing alignments... [122.576s] Deallocating buffers... [0.079s] Loading trace points... [0.062s] Sorting trace points... [5.112s] Computing alignments... [121.606s] Deallocating buffers... [0.843s] Loading trace points... [0.507s] Sorting trace points... [4.041s] Computing alignments... [126.636s] Deallocating buffers... [0.367s] Loading trace points... [0.001s] Sorting trace points... [4.733s] Computing alignments... [123.082s] Deallocating buffers... [0.719s] Loading trace points... [0.08s] Sorting trace points... [3.645s] Computing alignments... [123.743s] Deallocating buffers... [0.207s] Loading trace points... [0.051s] Sorting trace points... [4.287s] Computing alignments... [124.944s] Deallocating buffers... [0.574s] Loading trace points... [0.001s] Sorting trace points... [5.021s] Computing alignments... [125.259s] Deallocating buffers... [0.71s] Loading trace points... [0.082s] Sorting trace points... [4.016s] Computing alignments... [120.958s] Deallocating buffers... [0.08s] Loading trace points... [0.08s] Sorting trace points... [3.961s] Computing alignments... [124.529s] Deallocating buffers... [0.599s] Loading trace points... [0.059s] Sorting trace points... [4.81s] Computing alignments... [120.97s] Deallocating buffers... [0.764s] Loading trace points... [0s] Sorting trace points... [3.557s] Computing alignments... [119.466s] Deallocating buffers... [0.448s] Loading trace points... [0.01s] [2072.82s] Deallocating reference... [0.093s] Loading reference sequences... [29.431s] Masking reference... [30.89s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.868s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.24s] Building query seed array... [2.74s] Computing hash join... [5.709s] Masking low complexity seeds... [0.258s] Searching alignments... [1139.63s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.55s] Building query seed array... [3.522s] Computing hash join... [5.781s] Masking low complexity seeds... [0.253s] Searching alignments... [479.522s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.904s] Building query seed array... [3.27s] Computing hash join... [5.529s] Masking low complexity seeds... [0.238s] Searching alignments... [355.729s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.984s] Building query seed array... [2.806s] Computing hash join... [5.437s] Masking low complexity seeds... [0.277s] Searching alignments... [363.399s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.97s] Building query seed array... [2.638s] Computing hash join... [5.548s] Masking low complexity seeds... [0.231s] Searching alignments... [541.44s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.169s] Building query seed array... [2.985s] Computing hash join... [5.309s] Masking low complexity seeds... [0.273s] Searching alignments... [401.825s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.45s] Building query seed array... [3.042s] Computing hash join... [5.699s] Masking low complexity seeds... [0.239s] Searching alignments... [299.771s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.245s] Building query seed array... [2.71s] Computing hash join... [5.496s] Masking low complexity seeds... [0.238s] Searching alignments... [316.252s] Deallocating memory... [0s] Deallocating buffers... [0.87s] Clearing query masking... [1.654s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.156s] Sorting trace points... [4.485s] Computing alignments... [129.726s] Deallocating buffers... [0.168s] Loading trace points... [0.066s] Sorting trace points... [5.348s] Computing alignments... [134.343s] Deallocating buffers... [0.665s] Loading trace points... [0.047s] Sorting trace points... [3.975s] Computing alignments... [131.575s] Deallocating buffers... [0.536s] Loading trace points... [0.064s] Sorting trace points... [5.396s] Computing alignments... [135.658s] Deallocating buffers... [0.904s] Loading trace points... [0.045s] Sorting trace points... [4.524s] Computing alignments... [130.406s] Deallocating buffers... [0.65s] Loading trace points... [0.063s] Sorting trace points... [4.189s] Computing alignments... [131.103s] Deallocating buffers... [0.226s] Loading trace points... [0.089s] Sorting trace points... [5.121s] Computing alignments... [129.945s] Deallocating buffers... [0.601s] Loading trace points... [0.049s] Sorting trace points... [5.529s] Computing alignments... [134.46s] Deallocating buffers... [0.983s] Loading trace points... [0.067s] Sorting trace points... [5.667s] Computing alignments... [130.643s] Deallocating buffers... [0.932s] Loading trace points... [0.054s] Sorting trace points... [4.092s] Computing alignments... [131.885s] Deallocating buffers... [0.254s] Loading trace points... [0.076s] Sorting trace points... [4.994s] Computing alignments... [133.228s] Deallocating buffers... [0.798s] Loading trace points... [0.054s] Sorting trace points... [5.303s] Computing alignments... [133.224s] Deallocating buffers... [0.926s] Loading trace points... [0.047s] Sorting trace points... [5.001s] Computing alignments... [129.278s] Deallocating buffers... [0.838s] Loading trace points... [0.072s] Sorting trace points... [3.949s] Computing alignments... [131.953s] Deallocating buffers... [0.082s] Loading trace points... [0.093s] Sorting trace points... [4.938s] Computing alignments... [128.441s] Deallocating buffers... [0.739s] Loading trace points... [0s] Sorting trace points... [4.407s] Computing alignments... [126.129s] Deallocating buffers... [0.078s] Loading trace points... [0s] [2211.49s] Deallocating reference... [0.074s] Loading reference sequences... [245.419s] Masking reference... [30.896s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.766s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.402s] Building query seed array... [2.627s] Computing hash join... [5.936s] Masking low complexity seeds... [0.252s] Searching alignments... [1125.32s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.217s] Building query seed array... [3.134s] Computing hash join... [6.297s] Masking low complexity seeds... [0.257s] Searching alignments... [478.799s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.607s] Building query seed array... [3.166s] Computing hash join... [6.243s] Masking low complexity seeds... [0.253s] Searching alignments... [352.733s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.057s] Building query seed array... [2.611s] Computing hash join... [6.347s] Masking low complexity seeds... [0.248s] Searching alignments... [359.385s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.085s] Building query seed array... [2.39s] Computing hash join... [6.102s] Masking low complexity seeds... [0.239s] Searching alignments... [535.249s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.471s] Building query seed array... [2.753s] Computing hash join... [6.156s] Masking low complexity seeds... [0.275s] Searching alignments... [402.432s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.117s] Building query seed array... [2.901s] Computing hash join... [6.268s] Masking low complexity seeds... [0.26s] Searching alignments... [295.144s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.034s] Building query seed array... [2.469s] Computing hash join... [6.411s] Masking low complexity seeds... [0.27s] Searching alignments... [306.674s] Deallocating memory... [0s] Deallocating buffers... [0.327s] Clearing query masking... [1.842s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [22.232s] Sorting trace points... [4.391s] Computing alignments... [137.888s] Deallocating buffers... [0.22s] Loading trace points... [0.044s] Sorting trace points... [5.16s] Computing alignments... [141.665s] Deallocating buffers... [0.669s] Loading trace points... [0.049s] Sorting trace points... [4.361s] Computing alignments... [140.211s] Deallocating buffers... [0.163s] Loading trace points... [0.059s] Sorting trace points... [4.717s] Computing alignments... [145.27s] Deallocating buffers... [0.54s] Loading trace points... [0.067s] Sorting trace points... [4.17s] Computing alignments... [139.837s] Deallocating buffers... [0.361s] Loading trace points... [0.069s] Sorting trace points... [4.082s] Computing alignments... [140.5s] Deallocating buffers... [0.476s] Loading trace points... [0.07s] Sorting trace points... [3.834s] Computing alignments... [138.366s] Deallocating buffers... [0.364s] Loading trace points... [0.078s] Sorting trace points... [4.118s] Computing alignments... [144.058s] Deallocating buffers... [0.434s] Loading trace points... [0.103s] Sorting trace points... [4.073s] Computing alignments... [139.652s] Deallocating buffers... [0.378s] Loading trace points... [0.076s] Sorting trace points... [4.322s] Computing alignments... [141.498s] Deallocating buffers... [0.56s] Loading trace points... [0.07s] Sorting trace points... [4.837s] Computing alignments... [141.122s] Deallocating buffers... [0.569s] Loading trace points... [0.1s] Sorting trace points... [3.717s] Computing alignments... [142.17s] Deallocating buffers... [0.167s] Loading trace points... [0.078s] Sorting trace points... [4.389s] Computing alignments... [136.995s] Deallocating buffers... [0.584s] Loading trace points... [0.08s] Sorting trace points... [3.811s] Computing alignments... [141.119s] Deallocating buffers... [0.13s] Loading trace points... [0.055s] Sorting trace points... [4.224s] Computing alignments... [136.788s] Deallocating buffers... [0.525s] Loading trace points... [0s] Sorting trace points... [4.073s] Computing alignments... [136.108s] Deallocating buffers... [0.219s] Loading trace points... [0s] [2341.24s] Deallocating reference... [0.067s] Loading reference sequences... [256.186s] Masking reference... [31.776s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.286s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.537s] Building query seed array... [2.728s] Computing hash join... [6.127s] Masking low complexity seeds... [0.243s] Searching alignments... [1133.25s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.837s] Building query seed array... [3.455s] Computing hash join... [6.333s] Masking low complexity seeds... [0.27s] Searching alignments... [480.471s] Deallocating memory... [0.006s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.365s] Building query seed array... [3.477s] Computing hash join... [5.206s] Masking low complexity seeds... [0.261s] Searching alignments... [359.286s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.303s] Building query seed array... [2.705s] Computing hash join... [5.71s] Masking low complexity seeds... [0.257s] Searching alignments... [357.795s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.666s] Building query seed array... [2.506s] Computing hash join... [5.169s] Masking low complexity seeds... [0.26s] Searching alignments... [539.862s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.032s] Building query seed array... [3.025s] Computing hash join... [5.929s] Masking low complexity seeds... [0.243s] Searching alignments... [403.985s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.539s] Building query seed array... [2.947s] Computing hash join... [5.956s] Masking low complexity seeds... [0.299s] Searching alignments... [297.576s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.684s] Building query seed array... [2.603s] Computing hash join... [5.714s] Masking low complexity seeds... [0.264s] Searching alignments... [313.409s] Deallocating memory... [0s] Deallocating buffers... [1.948s] Clearing query masking... [1.677s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [21.916s] Sorting trace points... [4.206s] Computing alignments... [113.313s] Deallocating buffers... [0.051s] Loading trace points... [0.068s] Sorting trace points... [5.255s] Computing alignments... [116.134s] Deallocating buffers... [0.888s] Loading trace points... [0.055s] Sorting trace points... [5.535s] Computing alignments... [115.095s] Deallocating buffers... [1.051s] Loading trace points... [0.091s] Sorting trace points... [5.823s] Computing alignments... [117.967s] Deallocating buffers... [0.962s] Loading trace points... [0.057s] Sorting trace points... [6.014s] Computing alignments... [114.825s] Deallocating buffers... [1.135s] Loading trace points... [0.091s] Sorting trace points... [4.378s] Computing alignments... [113.361s] Deallocating buffers... [0.052s] Loading trace points... [0.086s] Sorting trace points... [5.009s] Computing alignments... [115.574s] Deallocating buffers... [0.86s] Loading trace points... [0.089s] Sorting trace points... [4.714s] Computing alignments... [116.195s] Deallocating buffers... [0.077s] Loading trace points... [0.086s] Sorting trace points... [5.377s] Computing alignments... [114.182s] Deallocating buffers... [1.033s] Loading trace points... [0.039s] Sorting trace points... [4.47s] Computing alignments... [114.023s] Deallocating buffers... [0.077s] Loading trace points... [0.101s] Sorting trace points... [4.438s] Computing alignments... [114.94s] Deallocating buffers... [0.648s] Loading trace points... [0.082s] Sorting trace points... [5.71s] Computing alignments... [117.303s] Deallocating buffers... [1.136s] Loading trace points... [0.075s] Sorting trace points... [3.891s] Computing alignments... [114.88s] Deallocating buffers... [0.373s] Loading trace points... [0.056s] Sorting trace points... [6.045s] Computing alignments... [114.699s] Deallocating buffers... [1.208s] Loading trace points... [0.101s] Sorting trace points... [4.285s] Computing alignments... [114.271s] Deallocating buffers... [0.064s] Loading trace points... [0s] Sorting trace points... [3.992s] Computing alignments... [112.54s] Deallocating buffers... [0.637s] Loading trace points... [0s] [1951.88s] Deallocating reference... [0.079s] Loading reference sequences... [29.151s] Masking reference... [30.931s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.534s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.294s] Building query seed array... [2.604s] Computing hash join... [6.477s] Masking low complexity seeds... [0.252s] Searching alignments... [1130.3s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.227s] Building query seed array... [3.12s] Computing hash join... [6.624s] Masking low complexity seeds... [0.261s] Searching alignments... [477.064s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.055s] Building query seed array... [3.111s] Computing hash join... [6.426s] Masking low complexity seeds... [0.252s] Searching alignments... [358.783s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.038s] Building query seed array... [2.663s] Computing hash join... [6.314s] Masking low complexity seeds... [0.245s] Searching alignments... [359.834s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.33s] Building query seed array... [2.492s] Computing hash join... [6.358s] Masking low complexity seeds... [0.247s] Searching alignments... [532.078s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.412s] Building query seed array... [2.771s] Computing hash join... [6.502s] Masking low complexity seeds... [0.238s] Searching alignments... [396.97s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.152s] Building query seed array... [2.803s] Computing hash join... [6.256s] Masking low complexity seeds... [0.233s] Searching alignments... [297.31s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.829s] Building query seed array... [2.384s] Computing hash join... [6.429s] Masking low complexity seeds... [0.258s] Searching alignments... [306.913s] Deallocating memory... [0s] Deallocating buffers... [0.268s] Clearing query masking... [1.915s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.284s] Sorting trace points... [4.535s] Computing alignments... [114.379s] Deallocating buffers... [0.202s] Loading trace points... [0.091s] Sorting trace points... [5.437s] Computing alignments... [115.646s] Deallocating buffers... [0.509s] Loading trace points... [0.064s] Sorting trace points... [4.576s] Computing alignments... [115.336s] Deallocating buffers... [0.76s] Loading trace points... [0.095s] Sorting trace points... [5.188s] Computing alignments... [119.395s] Deallocating buffers... [0.404s] Loading trace points... [0.048s] Sorting trace points... [3.937s] Computing alignments... [115.148s] Deallocating buffers... [0.327s] Loading trace points... [0.073s] Sorting trace points... [4.599s] Computing alignments... [114.026s] Deallocating buffers... [0.377s] Loading trace points... [0.114s] Sorting trace points... [4.238s] Computing alignments... [115.459s] Deallocating buffers... [0.449s] Loading trace points... [0.094s] Sorting trace points... [5.509s] Computing alignments... [117.491s] Deallocating buffers... [0.924s] Loading trace points... [0.067s] Sorting trace points... [5.703s] Computing alignments... [115.042s] Deallocating buffers... [0.899s] Loading trace points... [0.075s] Sorting trace points... [4.556s] Computing alignments... [115.392s] Deallocating buffers... [0.08s] Loading trace points... [0.109s] Sorting trace points... [3.937s] Computing alignments... [116.584s] Deallocating buffers... [0.575s] Loading trace points... [0.068s] Sorting trace points... [4.638s] Computing alignments... [118.758s] Deallocating buffers... [0.863s] Loading trace points... [0.052s] Sorting trace points... [3.893s] Computing alignments... [115.842s] Deallocating buffers... [0.105s] Loading trace points... [0.054s] Sorting trace points... [4.251s] Computing alignments... [116.63s] Deallocating buffers... [0.697s] Loading trace points... [0.086s] Sorting trace points... [3.766s] Computing alignments... [114.514s] Deallocating buffers... [0.388s] Loading trace points... [0s] Sorting trace points... [4.717s] Computing alignments... [112.941s] Deallocating buffers... [0.466s] Loading trace points... [0s] [1957.69s] Deallocating reference... [0.068s] Loading reference sequences... [30.232s] Masking reference... [31.26s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.966s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.255s] Building query seed array... [2.719s] Computing hash join... [6.049s] Masking low complexity seeds... [0.255s] Searching alignments... [1128.76s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [14.121s] Building query seed array... [3.632s] Computing hash join... [6.124s] Masking low complexity seeds... [0.278s] Searching alignments... [481.66s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.184s] Building query seed array... [3.375s] Computing hash join... [6.405s] Masking low complexity seeds... [0.272s] Searching alignments... [356.127s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.837s] Building query seed array... [2.952s] Computing hash join... [5.254s] Masking low complexity seeds... [0.293s] Searching alignments... [354.981s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.608s] Building query seed array... [2.514s] Computing hash join... [5.64s] Masking low complexity seeds... [0.254s] Searching alignments... [530.468s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.072s] Building query seed array... [2.881s] Computing hash join... [5.405s] Masking low complexity seeds... [0.243s] Searching alignments... [400.471s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.644s] Building query seed array... [3.164s] Computing hash join... [5.518s] Masking low complexity seeds... [0.269s] Searching alignments... [296.069s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.633s] Building query seed array... [2.662s] Computing hash join... [6.125s] Masking low complexity seeds... [0.296s] Searching alignments... [309.728s] Deallocating memory... [0s] Deallocating buffers... [2.511s] Clearing query masking... [1.749s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [21.722s] Sorting trace points... [4.512s] Computing alignments... [109.516s] Deallocating buffers... [0.051s] Loading trace points... [0.074s] Sorting trace points... [4.344s] Computing alignments... [111.742s] Deallocating buffers... [0.853s] Loading trace points... [0.115s] Sorting trace points... [5.451s] Computing alignments... [111.251s] Deallocating buffers... [1.085s] Loading trace points... [0.043s] Sorting trace points... [4.288s] Computing alignments... [114.569s] Deallocating buffers... [0.074s] Loading trace points... [0.086s] Sorting trace points... [5.043s] Computing alignments... [110.751s] Deallocating buffers... [0.867s] Loading trace points... [0s] Sorting trace points... [3.639s] Computing alignments... [109.888s] Deallocating buffers... [0.279s] Loading trace points... [0.064s] Sorting trace points... [5.632s] Computing alignments... [111.02s] Deallocating buffers... [1.007s] Loading trace points... [0.088s] Sorting trace points... [4.733s] Computing alignments... [112.306s] Deallocating buffers... [0.364s] Loading trace points... [0.07s] Sorting trace points... [4.977s] Computing alignments... [109.405s] Deallocating buffers... [0.596s] Loading trace points... [0.133s] Sorting trace points... [3.547s] Computing alignments... [111.193s] Deallocating buffers... [0.337s] Loading trace points... [0.046s] Sorting trace points... [3.88s] Computing alignments... [111.455s] Deallocating buffers... [0.591s] Loading trace points... [0.056s] Sorting trace points... [4.336s] Computing alignments... [113.62s] Deallocating buffers... [0.599s] Loading trace points... [0.061s] Sorting trace points... [4.731s] Computing alignments... [110.94s] Deallocating buffers... [0.399s] Loading trace points... [0.07s] Sorting trace points... [4.628s] Computing alignments... [111.483s] Deallocating buffers... [0.651s] Loading trace points... [0.04s] Sorting trace points... [5.029s] Computing alignments... [109.924s] Deallocating buffers... [0.938s] Loading trace points... [0s] Sorting trace points... [4.664s] Computing alignments... [108.956s] Deallocating buffers... [0.736s] Loading trace points... [0s] [1883.73s] Deallocating reference... [0.062s] Loading reference sequences... [31.631s] Masking reference... [30.878s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.236s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.537s] Building query seed array... [2.693s] Computing hash join... [6.496s] Masking low complexity seeds... [0.429s] Searching alignments... [1140.94s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.118s] Building query seed array... [3.507s] Computing hash join... [5.445s] Masking low complexity seeds... [0.246s] Searching alignments... [478.317s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.95s] Building query seed array... [3.393s] Computing hash join... [6.223s] Masking low complexity seeds... [0.258s] Searching alignments... [353.279s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.455s] Building query seed array... [2.766s] Computing hash join... [5.394s] Masking low complexity seeds... [0.27s] Searching alignments... [357.55s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.093s] Building query seed array... [2.525s] Computing hash join... [5.512s] Masking low complexity seeds... [0.279s] Searching alignments... [544.382s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.111s] Building query seed array... [2.923s] Computing hash join... [5.379s] Masking low complexity seeds... [0.271s] Searching alignments... [407.517s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.867s] Building query seed array... [3.016s] Computing hash join... [6.21s] Masking low complexity seeds... [0.246s] Searching alignments... [300.22s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.474s] Building query seed array... [2.698s] Computing hash join... [5.433s] Masking low complexity seeds... [0.243s] Searching alignments... [313.718s] Deallocating memory... [0s] Deallocating buffers... [2.225s] Clearing query masking... [1.684s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [22.637s] Sorting trace points... [4.562s] Computing alignments... [130.722s] Deallocating buffers... [0.198s] Loading trace points... [0.091s] Sorting trace points... [5.646s] Computing alignments... [135.221s] Deallocating buffers... [0.781s] Loading trace points... [0.591s] Sorting trace points... [4.432s] Computing alignments... [132.855s] Deallocating buffers... [0.351s] Loading trace points... [0.06s] Sorting trace points... [4.511s] Computing alignments... [139.737s] Deallocating buffers... [0.605s] Loading trace points... [0.069s] Sorting trace points... [5.101s] Computing alignments... [132.806s] Deallocating buffers... [0.895s] Loading trace points... [0.463s] Sorting trace points... [3.753s] Computing alignments... [133.457s] Deallocating buffers... [0.104s] Loading trace points... [0.058s] Sorting trace points... [4.63s] Computing alignments... [132.373s] Deallocating buffers... [0.704s] Loading trace points... [0.067s] Sorting trace points... [3.963s] Computing alignments... [137.14s] Deallocating buffers... [0.29s] Loading trace points... [0.056s] Sorting trace points... [4.494s] Computing alignments... [133.526s] Deallocating buffers... [0.626s] Loading trace points... [0.058s] Sorting trace points... [4.321s] Computing alignments... [134.998s] Deallocating buffers... [0.452s] Loading trace points... [0.08s] Sorting trace points... [3.977s] Computing alignments... [134.839s] Deallocating buffers... [0.491s] Loading trace points... [0.049s] Sorting trace points... [4.211s] Computing alignments... [135.629s] Deallocating buffers... [0.397s] Loading trace points... [0.067s] Sorting trace points... [4.307s] Computing alignments... [130.576s] Deallocating buffers... [0.397s] Loading trace points... [0.093s] Sorting trace points... [4.334s] Computing alignments... [135.244s] Deallocating buffers... [0.593s] Loading trace points... [0.084s] Sorting trace points... [4.155s] Computing alignments... [130.403s] Deallocating buffers... [0.465s] Loading trace points... [0s] Sorting trace points... [4.154s] Computing alignments... [129.18s] Deallocating buffers... [0.437s] Loading trace points... [0s] [2242.53s] Deallocating reference... [0.063s] Loading reference sequences... [32.743s] Masking reference... [31.901s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.209s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.082s] Building query seed array... [2.684s] Computing hash join... [5.986s] Masking low complexity seeds... [0.256s] Searching alignments... [1132.1s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.511s] Building query seed array... [3.601s] Computing hash join... [5.459s] Masking low complexity seeds... [0.243s] Searching alignments... [483.317s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.17s] Building query seed array... [3.366s] Computing hash join... [5.477s] Masking low complexity seeds... [0.336s] Searching alignments... [350.917s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.542s] Building query seed array... [2.882s] Computing hash join... [5.768s] Masking low complexity seeds... [0.272s] Searching alignments... [357.987s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.612s] Building query seed array... [2.496s] Computing hash join... [5.328s] Masking low complexity seeds... [0.257s] Searching alignments... [535.956s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.669s] Building query seed array... [3.079s] Computing hash join... [5.098s] Masking low complexity seeds... [0.24s] Searching alignments... [404.831s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.993s] Building query seed array... [2.997s] Computing hash join... [5.965s] Masking low complexity seeds... [0.321s] Searching alignments... [297.392s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.748s] Building query seed array... [2.696s] Computing hash join... [5.538s] Masking low complexity seeds... [0.255s] Searching alignments... [309.714s] Deallocating memory... [0s] Deallocating buffers... [1.656s] Clearing query masking... [1.719s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [21.859s] Sorting trace points... [4.546s] Computing alignments... [106.981s] Deallocating buffers... [0.051s] Loading trace points... [0.053s] Sorting trace points... [5.182s] Computing alignments... [108.913s] Deallocating buffers... [0.968s] Loading trace points... [0.064s] Sorting trace points... [3.997s] Computing alignments... [107.272s] Deallocating buffers... [0.062s] Loading trace points... [0.069s] Sorting trace points... [4.976s] Computing alignments... [110.756s] Deallocating buffers... [0.706s] Loading trace points... [0.06s] Sorting trace points... [4.175s] Computing alignments... [106.582s] Deallocating buffers... [0.46s] Loading trace points... [0.07s] Sorting trace points... [4.936s] Computing alignments... [107.171s] Deallocating buffers... [0.432s] Loading trace points... [0.393s] Sorting trace points... [4.806s] Computing alignments... [108.143s] Deallocating buffers... [0.634s] Loading trace points... [0.044s] Sorting trace points... [4.293s] Computing alignments... [108.971s] Deallocating buffers... [0.164s] Loading trace points... [0.044s] Sorting trace points... [5.349s] Computing alignments... [106.614s] Deallocating buffers... [0.867s] Loading trace points... [0.045s] Sorting trace points... [3.316s] Computing alignments... [107.848s] Deallocating buffers... [0.174s] Loading trace points... [0.114s] Sorting trace points... [5.045s] Computing alignments... [108.464s] Deallocating buffers... [0.508s] Loading trace points... [0.051s] Sorting trace points... [3.955s] Computing alignments... [110.957s] Deallocating buffers... [0.219s] Loading trace points... [0.058s] Sorting trace points... [4.416s] Computing alignments... [107.882s] Deallocating buffers... [0.438s] Loading trace points... [0.048s] Sorting trace points... [5.548s] Computing alignments... [109.345s] Deallocating buffers... [0.926s] Loading trace points... [0.07s] Sorting trace points... [5.972s] Computing alignments... [106.96s] Deallocating buffers... [1.102s] Loading trace points... [0s] Sorting trace points... [3.206s] Computing alignments... [106.065s] Deallocating buffers... [0.055s] Loading trace points... [0s] [1833.63s] Deallocating reference... [0.067s] Loading reference sequences... [29.072s] Masking reference... [30.888s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.655s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.325s] Building query seed array... [2.629s] Computing hash join... [5.796s] Masking low complexity seeds... [0.263s] Searching alignments... [1146.42s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.415s] Building query seed array... [3.518s] Computing hash join... [6.34s] Masking low complexity seeds... [0.247s] Searching alignments... [479.802s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.568s] Building query seed array... [3.468s] Computing hash join... [6.247s] Masking low complexity seeds... [0.259s] Searching alignments... [353.23s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.985s] Building query seed array... [2.722s] Computing hash join... [6.011s] Masking low complexity seeds... [0.258s] Searching alignments... [361.101s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.091s] Building query seed array... [2.64s] Computing hash join... [5.745s] Masking low complexity seeds... [0.249s] Searching alignments... [536.2s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.837s] Building query seed array... [2.939s] Computing hash join... [6.36s] Masking low complexity seeds... [0.272s] Searching alignments... [403.695s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.493s] Building query seed array... [3s] Computing hash join... [6.056s] Masking low complexity seeds... [0.284s] Searching alignments... [297.061s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.032s] Building query seed array... [2.641s] Computing hash join... [5.926s] Masking low complexity seeds... [0.251s] Searching alignments... [310.758s] Deallocating memory... [0s] Deallocating buffers... [0.753s] Clearing query masking... [1.983s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.834s] Sorting trace points... [4.625s] Computing alignments... [137.493s] Deallocating buffers... [0.462s] Loading trace points... [0.001s] Sorting trace points... [4.981s] Computing alignments... [140.546s] Deallocating buffers... [0.454s] Loading trace points... [0.001s] Sorting trace points... [4.782s] Computing alignments... [138.047s] Deallocating buffers... [0.895s] Loading trace points... [0.071s] Sorting trace points... [3.471s] Computing alignments... [142.733s] Deallocating buffers... [0.115s] Loading trace points... [0.163s] Sorting trace points... [5.249s] Computing alignments... [137.465s] Deallocating buffers... [0.808s] Loading trace points... [0.055s] Sorting trace points... [3.399s] Computing alignments... [136.76s] Deallocating buffers... [0.09s] Loading trace points... [0.081s] Sorting trace points... [4.853s] Computing alignments... [137.07s] Deallocating buffers... [0.735s] Loading trace points... [0.073s] Sorting trace points... [3.743s] Computing alignments... [141.096s] Deallocating buffers... [0.299s] Loading trace points... [0.078s] Sorting trace points... [4.695s] Computing alignments... [136.831s] Deallocating buffers... [0.918s] Loading trace points... [0.847s] Sorting trace points... [4.924s] Computing alignments... [137.644s] Deallocating buffers... [0.541s] Loading trace points... [0.078s] Sorting trace points... [5.619s] Computing alignments... [139.457s] Deallocating buffers... [1.177s] Loading trace points... [0.112s] Sorting trace points... [4.246s] Computing alignments... [140.175s] Deallocating buffers... [0.091s] Loading trace points... [0.08s] Sorting trace points... [4.83s] Computing alignments... [134.637s] Deallocating buffers... [0.782s] Loading trace points... [0.072s] Sorting trace points... [4.263s] Computing alignments... [138.652s] Deallocating buffers... [0.105s] Loading trace points... [0.609s] Sorting trace points... [4.997s] Computing alignments... [135.501s] Deallocating buffers... [0.732s] Loading trace points... [0s] Sorting trace points... [5.336s] Computing alignments... [134.35s] Deallocating buffers... [0.979s] Loading trace points... [0s] [2316.91s] Deallocating reference... [0.073s] Loading reference sequences... [246.975s] Masking reference... [30.936s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.186s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.165s] Building query seed array... [2.637s] Computing hash join... [5.826s] Masking low complexity seeds... [0.248s] Searching alignments... [1133.14s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.796s] Building query seed array... [3.516s] Computing hash join... [6.287s] Masking low complexity seeds... [0.254s] Searching alignments... [480.422s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.002s] Building query seed array... [3.351s] Computing hash join... [6.183s] Masking low complexity seeds... [0.252s] Searching alignments... [354.469s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.935s] Building query seed array... [2.753s] Computing hash join... [6.235s] Masking low complexity seeds... [0.259s] Searching alignments... [358.553s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.399s] Building query seed array... [2.569s] Computing hash join... [6.135s] Masking low complexity seeds... [0.248s] Searching alignments... [541.183s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.607s] Building query seed array... [2.939s] Computing hash join... [6.618s] Masking low complexity seeds... [0.271s] Searching alignments... [404.781s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.053s] Building query seed array... [2.985s] Computing hash join... [6.332s] Masking low complexity seeds... [0.245s] Searching alignments... [297.103s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.784s] Building query seed array... [2.697s] Computing hash join... [6.29s] Masking low complexity seeds... [0.245s] Searching alignments... [313.291s] Deallocating memory... [0s] Deallocating buffers... [0.674s] Clearing query masking... [1.802s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.986s] Sorting trace points... [4.39s] Computing alignments... [135.838s] Deallocating buffers... [0.501s] Loading trace points... [0.06s] Sorting trace points... [5.416s] Computing alignments... [140.575s] Deallocating buffers... [0.598s] Loading trace points... [0.064s] Sorting trace points... [4.943s] Computing alignments... [136.214s] Deallocating buffers... [0.749s] Loading trace points... [0.078s] Sorting trace points... [4.812s] Computing alignments... [142.353s] Deallocating buffers... [0.315s] Loading trace points... [0.067s] Sorting trace points... [4.681s] Computing alignments... [137.522s] Deallocating buffers... [0.611s] Loading trace points... [0.082s] Sorting trace points... [4.364s] Computing alignments... [136.971s] Deallocating buffers... [0.302s] Loading trace points... [0.061s] Sorting trace points... [4.503s] Computing alignments... [135.281s] Deallocating buffers... [0.547s] Loading trace points... [0.052s] Sorting trace points... [4.388s] Computing alignments... [140.457s] Deallocating buffers... [0.388s] Loading trace points... [0.05s] Sorting trace points... [4.327s] Computing alignments... [136.623s] Deallocating buffers... [0.502s] Loading trace points... [0.07s] Sorting trace points... [4.157s] Computing alignments... [137.916s] Deallocating buffers... [0.363s] Loading trace points... [0.003s] Sorting trace points... [4.314s] Computing alignments... [138.527s] Deallocating buffers... [0.564s] Loading trace points... [0.075s] Sorting trace points... [4.793s] Computing alignments... [138.87s] Deallocating buffers... [0.695s] Loading trace points... [0.06s] Sorting trace points... [4.47s] Computing alignments... [133.5s] Deallocating buffers... [0.365s] Loading trace points... [0.062s] Sorting trace points... [4.855s] Computing alignments... [137.64s] Deallocating buffers... [0.466s] Loading trace points... [0s] Sorting trace points... [4.487s] Computing alignments... [133.681s] Deallocating buffers... [0.402s] Loading trace points... [0s] Sorting trace points... [3.923s] Computing alignments... [132.578s] Deallocating buffers... [0.566s] Loading trace points... [0s] [2299.21s] Deallocating reference... [0.07s] Loading reference sequences... [29.141s] Masking reference... [30.92s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.78s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.507s] Building query seed array... [2.698s] Computing hash join... [5.829s] Masking low complexity seeds... [0.253s] Searching alignments... [1141.7s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.67s] Building query seed array... [3.439s] Computing hash join... [6.752s] Masking low complexity seeds... [0.277s] Searching alignments... [475.818s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.767s] Building query seed array... [3.348s] Computing hash join... [5.989s] Masking low complexity seeds... [0.244s] Searching alignments... [354.102s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.979s] Building query seed array... [2.72s] Computing hash join... [6.497s] Masking low complexity seeds... [0.27s] Searching alignments... [357.412s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.37s] Building query seed array... [2.474s] Computing hash join... [6.227s] Masking low complexity seeds... [0.248s] Searching alignments... [532.077s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.316s] Building query seed array... [2.885s] Computing hash join... [6.073s] Masking low complexity seeds... [0.271s] Searching alignments... [408.601s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.673s] Building query seed array... [2.954s] Computing hash join... [6.276s] Masking low complexity seeds... [0.244s] Searching alignments... [299.37s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.792s] Building query seed array... [2.603s] Computing hash join... [6.218s] Masking low complexity seeds... [0.262s] Searching alignments... [315.031s] Deallocating memory... [0s] Deallocating buffers... [0.649s] Clearing query masking... [1.777s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [22.739s] Sorting trace points... [4.918s] Computing alignments... [129.942s] Deallocating buffers... [0.415s] Loading trace points... [0.087s] Sorting trace points... [4.888s] Computing alignments... [133.258s] Deallocating buffers... [0.801s] Loading trace points... [0.06s] Sorting trace points... [3.453s] Computing alignments... [131.615s] Deallocating buffers... [0.193s] Loading trace points... [0.083s] Sorting trace points... [5.193s] Computing alignments... [136.59s] Deallocating buffers... [0.86s] Loading trace points... [0.063s] Sorting trace points... [5.079s] Computing alignments... [132.203s] Deallocating buffers... [0.948s] Loading trace points... [0.061s] Sorting trace points... [4.091s] Computing alignments... [131.771s] Deallocating buffers... [0.412s] Loading trace points... [0.002s] Sorting trace points... [4.106s] Computing alignments... [130.968s] Deallocating buffers... [0.368s] Loading trace points... [0.074s] Sorting trace points... [5.389s] Computing alignments... [134.303s] Deallocating buffers... [0.798s] Loading trace points... [0.054s] Sorting trace points... [4.426s] Computing alignments... [131.283s] Deallocating buffers... [0.47s] Loading trace points... [0.05s] Sorting trace points... [4.518s] Computing alignments... [132.394s] Deallocating buffers... [0.751s] Loading trace points... [0.101s] Sorting trace points... [4.384s] Computing alignments... [133.157s] Deallocating buffers... [0.536s] Loading trace points... [0.062s] Sorting trace points... [4.777s] Computing alignments... [133.606s] Deallocating buffers... [0.307s] Loading trace points... [0.062s] Sorting trace points... [5.09s] Computing alignments... [128.897s] Deallocating buffers... [0.79s] Loading trace points... [0.053s] Sorting trace points... [3.56s] Computing alignments... [132.264s] Deallocating buffers... [0.094s] Loading trace points... [0.071s] Sorting trace points... [4.82s] Computing alignments... [128.878s] Deallocating buffers... [0.732s] Loading trace points... [0s] Sorting trace points... [4.234s] Computing alignments... [128.053s] Deallocating buffers... [0.166s] Loading trace points... [0s] [2214.53s] Deallocating reference... [0.081s] Loading reference sequences... [29.552s] Masking reference... [25.061s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.008s] Building reference histograms... [26.47s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.319s] Building query seed array... [2.607s] Computing hash join... [4.408s] Masking low complexity seeds... [0.232s] Searching alignments... [914.559s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.76s] Building query seed array... [2.941s] Computing hash join... [4.863s] Masking low complexity seeds... [0.234s] Searching alignments... [384.863s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.91s] Building query seed array... [3.17s] Computing hash join... [4.628s] Masking low complexity seeds... [0.244s] Searching alignments... [286.92s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.174s] Building query seed array... [2.553s] Computing hash join... [4.558s] Masking low complexity seeds... [0.235s] Searching alignments... [285.574s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.359s] Building query seed array... [2.368s] Computing hash join... [4.417s] Masking low complexity seeds... [0.224s] Searching alignments... [425.958s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.048s] Building query seed array... [2.65s] Computing hash join... [4.271s] Masking low complexity seeds... [0.219s] Searching alignments... [324.541s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.989s] Building query seed array... [2.709s] Computing hash join... [4.637s] Masking low complexity seeds... [0.218s] Searching alignments... [239.04s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.399s] Building query seed array... [2.364s] Computing hash join... [4.549s] Masking low complexity seeds... [0.218s] Searching alignments... [250.742s] Deallocating memory... [0s] Deallocating buffers... [0.113s] Clearing query masking... [1.714s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.811s] Sorting trace points... [3.69s] Computing alignments... [99.072s] Deallocating buffers... [0.071s] Loading trace points... [0.043s] Sorting trace points... [3.115s] Computing alignments... [102.792s] Deallocating buffers... [0.427s] Loading trace points... [0s] Sorting trace points... [3.5s] Computing alignments... [100.921s] Deallocating buffers... [0.075s] Loading trace points... [0.065s] Sorting trace points... [3.671s] Computing alignments... [104.563s] Deallocating buffers... [0.213s] Loading trace points... [0s] Sorting trace points... [3.507s] Computing alignments... [99.885s] Deallocating buffers... [0.488s] Loading trace points... [0.094s] Sorting trace points... [3.488s] Computing alignments... [100.427s] Deallocating buffers... [0.052s] Loading trace points... [0.095s] Sorting trace points... [3.282s] Computing alignments... [101.442s] Deallocating buffers... [0.228s] Loading trace points... [0.078s] Sorting trace points... [3.599s] Computing alignments... [103.6s] Deallocating buffers... [0.064s] Loading trace points... [0.086s] Sorting trace points... [2.91s] Computing alignments... [100.25s] Deallocating buffers... [0.176s] Loading trace points... [0.074s] Sorting trace points... [4.021s] Computing alignments... [101.302s] Deallocating buffers... [0.66s] Loading trace points... [0.045s] Sorting trace points... [2.662s] Computing alignments... [101.624s] Deallocating buffers... [0.066s] Loading trace points... [0.101s] Sorting trace points... [3.862s] Computing alignments... [102.627s] Deallocating buffers... [0.169s] Loading trace points... [0.079s] Sorting trace points... [2.78s] Computing alignments... [99.659s] Deallocating buffers... [0.153s] Loading trace points... [0.066s] Sorting trace points... [3.451s] Computing alignments... [101.849s] Deallocating buffers... [0.514s] Loading trace points... [0.07s] Sorting trace points... [2.552s] Computing alignments... [98.852s] Deallocating buffers... [0.088s] Loading trace points... [0s] Sorting trace points... [3.155s] Computing alignments... [98.109s] Deallocating buffers... [0.32s] Loading trace points... [0s] [1692.81s] Deallocating reference... [0.05s] Loading reference sequences... [0.099s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [6631.88s] [6631.88s] Deallocating queries... [0.098s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.595s] [4.486s] Closing the database... [0s] Cleaning up... [0s] Total time = 93801.3s Reported 7481255252 pairwise alignments, 7481255252 HSPs. 6269570 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-14.trimmed.R2.fastq.gz complete: CH05-14.trimmed.R2.blastx.meganized.daa Now MEGANizing CH05-14.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-14.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (310.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.0s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12,342.1s) Total reads: 6,269,570 With hits: 6,269,570 Alignments: 5,662,547,380 Assig. Taxonomy: 4,016,352 Assig. SEED: 97,554 Assig. EGGNOG: 18,306 Assig. GTDB: 201,658 Assig. EC: 704,018 Assig. INTERPRO2GO: 1,892,103 MinSupport set to: 3134 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,033 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (26.8s) Min-supp. changes: 3,170 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7.2s) Binning reads Syncing 100% (0.2s) Class. Taxonomy: 160 Class. SEED: 472 Class. EGGNOG: 1,478 Class. GTDB: 45 Class. EC: 2,264 Class. INTERPRO2GO: 8,613 Total time: 12,696s Peak memory: 39.2 of 195.3G MEGANization of CH05-14.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-21.trimmed.R1.fastq.gz... cf43b32531f9ff98c15779d457ea29cf /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-21.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-21.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.289s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.737s] Opening the output file... [0s] Loading query sequences... [92.968s] Masking queries... [23.442s] Algorithm: Double-indexed Building query histograms... [18.805s] Loading reference sequences... [29.085s] Masking reference... [31.922s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.199s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.517s] Building query seed array... [2.197s] Computing hash join... [6.103s] Masking low complexity seeds... [0.157s] Searching alignments... [1045.53s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.925s] Building query seed array... [2.987s] Computing hash join... [4.876s] Masking low complexity seeds... [0.151s] Searching alignments... [435.56s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.363s] Building query seed array... [2.736s] Computing hash join... [4.793s] Masking low complexity seeds... [0.151s] Searching alignments... [318.855s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.49s] Building query seed array... [2.413s] Computing hash join... [5.151s] Masking low complexity seeds... [0.181s] Searching alignments... [318.367s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.439s] Building query seed array... [2.176s] Computing hash join... [4.703s] Masking low complexity seeds... [0.148s] Searching alignments... [480.163s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.432s] Building query seed array... [2.317s] Computing hash join... [4.696s] Masking low complexity seeds... [0.156s] Searching alignments... [376.225s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.764s] Building query seed array... [2.439s] Computing hash join... [5.737s] Masking low complexity seeds... [0.197s] Searching alignments... [267.299s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.34s] Building query seed array... [2.115s] Computing hash join... [5.177s] Masking low complexity seeds... [0.149s] Searching alignments... [277.952s] Deallocating memory... [0s] Deallocating buffers... [1.468s] Clearing query masking... [1.489s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [18.679s] Sorting trace points... [2.5s] Computing alignments... [110.116s] Deallocating buffers... [0.083s] Loading trace points... [0.06s] Sorting trace points... [3.845s] Computing alignments... [111.941s] Deallocating buffers... [0.706s] Loading trace points... [0.081s] Sorting trace points... [4.092s] Computing alignments... [112.31s] Deallocating buffers... [0.419s] Loading trace points... [0.051s] Sorting trace points... [3.71s] Computing alignments... [114.912s] Deallocating buffers... [0.081s] Loading trace points... [0.43s] Sorting trace points... [2.958s] Computing alignments... [112.107s] Deallocating buffers... [0.073s] Loading trace points... [0.104s] Sorting trace points... [3.66s] Computing alignments... [111.451s] Deallocating buffers... [0.065s] Loading trace points... [0.095s] Sorting trace points... [3.662s] Computing alignments... [111.469s] Deallocating buffers... [0.42s] Loading trace points... [0.083s] Sorting trace points... [3.474s] Computing alignments... [116.225s] Deallocating buffers... [0.066s] Loading trace points... [0.082s] Sorting trace points... [4.022s] Computing alignments... [111.639s] Deallocating buffers... [0.405s] Loading trace points... [0.073s] Sorting trace points... [3.458s] Computing alignments... [113.552s] Deallocating buffers... [0.073s] Loading trace points... [0.081s] Sorting trace points... [4.044s] Computing alignments... [114.078s] Deallocating buffers... [0.425s] Loading trace points... [0.088s] Sorting trace points... [3.837s] Computing alignments... [115.347s] Deallocating buffers... [0.108s] Loading trace points... [0.088s] Sorting trace points... [3.794s] Computing alignments... [113.919s] Deallocating buffers... [0.476s] Loading trace points... [0.108s] Sorting trace points... [3.628s] Computing alignments... [114.227s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [4.016s] Computing alignments... [112.013s] Deallocating buffers... [0.375s] Loading trace points... [0s] Sorting trace points... [4.476s] Computing alignments... [113.513s] Deallocating buffers... [0.878s] Loading trace points... [0s] [1892.98s] Deallocating reference... [0.066s] Loading reference sequences... [33.425s] Masking reference... [31.523s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.289s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.414s] Building query seed array... [2.303s] Computing hash join... [5.736s] Masking low complexity seeds... [0.183s] Searching alignments... [1021.07s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.347s] Building query seed array... [2.789s] Computing hash join... [5.232s] Masking low complexity seeds... [0.166s] Searching alignments... [427.069s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.533s] Building query seed array... [2.656s] Computing hash join... [5.919s] Masking low complexity seeds... [0.177s] Searching alignments... [307.542s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.757s] Building query seed array... [2.262s] Computing hash join... [4.912s] Masking low complexity seeds... [0.145s] Searching alignments... [317.048s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.133s] Building query seed array... [2.08s] Computing hash join... [4.999s] Masking low complexity seeds... [0.157s] Searching alignments... [484.967s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.546s] Building query seed array... [2.251s] Computing hash join... [5.001s] Masking low complexity seeds... [0.175s] Searching alignments... [378.225s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.838s] Building query seed array... [2.412s] Computing hash join... [4.881s] Masking low complexity seeds... [0.147s] Searching alignments... [261.113s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.332s] Building query seed array... [2.155s] Computing hash join... [5.27s] Masking low complexity seeds... [0.162s] Searching alignments... [276.707s] Deallocating memory... [0s] Deallocating buffers... [1.119s] Clearing query masking... [1.535s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.811s] Sorting trace points... [3.583s] Computing alignments... [114.971s] Deallocating buffers... [0.137s] Loading trace points... [0.047s] Sorting trace points... [3.275s] Computing alignments... [116.827s] Deallocating buffers... [0.106s] Loading trace points... [0.055s] Sorting trace points... [3.31s] Computing alignments... [116.963s] Deallocating buffers... [0.594s] Loading trace points... [0.042s] Sorting trace points... [3.546s] Computing alignments... [120.393s] Deallocating buffers... [0.296s] Loading trace points... [0.07s] Sorting trace points... [3.383s] Computing alignments... [116.786s] Deallocating buffers... [0.176s] Loading trace points... [0.088s] Sorting trace points... [2.943s] Computing alignments... [115.755s] Deallocating buffers... [0.185s] Loading trace points... [0.089s] Sorting trace points... [3.142s] Computing alignments... [116.453s] Deallocating buffers... [0.1s] Loading trace points... [0.404s] Sorting trace points... [2.787s] Computing alignments... [123.56s] Deallocating buffers... [0.097s] Loading trace points... [0.07s] Sorting trace points... [3.337s] Computing alignments... [115.939s] Deallocating buffers... [0.469s] Loading trace points... [0.074s] Sorting trace points... [3.564s] Computing alignments... [118.604s] Deallocating buffers... [0.434s] Loading trace points... [0.078s] Sorting trace points... [3.552s] Computing alignments... [118.522s] Deallocating buffers... [0.094s] Loading trace points... [0.075s] Sorting trace points... [3.745s] Computing alignments... [121.892s] Deallocating buffers... [0.323s] Loading trace points... [0.067s] Sorting trace points... [3.237s] Computing alignments... [117.863s] Deallocating buffers... [0.249s] Loading trace points... [0.054s] Sorting trace points... [4.001s] Computing alignments... [118.867s] Deallocating buffers... [0.44s] Loading trace points... [0.002s] Sorting trace points... [3.317s] Computing alignments... [117.314s] Deallocating buffers... [0.252s] Loading trace points... [0s] Sorting trace points... [3.263s] Computing alignments... [118.5s] Deallocating buffers... [0.473s] Loading trace points... [0s] [1966.8s] Deallocating reference... [0.068s] Loading reference sequences... [29.354s] Masking reference... [30.871s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.792s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.164s] Building query seed array... [2.14s] Computing hash join... [5.318s] Masking low complexity seeds... [0.156s] Searching alignments... [1036.49s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.714s] Building query seed array... [2.628s] Computing hash join... [5.383s] Masking low complexity seeds... [0.174s] Searching alignments... [429.552s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.155s] Building query seed array... [2.563s] Computing hash join... [5.346s] Masking low complexity seeds... [0.172s] Searching alignments... [314.419s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.061s] Building query seed array... [2.189s] Computing hash join... [5.163s] Masking low complexity seeds... [0.167s] Searching alignments... [322.266s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.073s] Building query seed array... [1.945s] Computing hash join... [4.86s] Masking low complexity seeds... [0.152s] Searching alignments... [483.716s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.166s] Building query seed array... [2.192s] Computing hash join... [5.171s] Masking low complexity seeds... [0.15s] Searching alignments... [370.564s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.023s] Building query seed array... [2.308s] Computing hash join... [4.856s] Masking low complexity seeds... [0.147s] Searching alignments... [266.525s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.481s] Building query seed array... [1.965s] Computing hash join... [5.014s] Masking low complexity seeds... [0.144s] Searching alignments... [274.176s] Deallocating memory... [0s] Deallocating buffers... [0.249s] Clearing query masking... [1.534s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.815s] Sorting trace points... [3.585s] Computing alignments... [114.344s] Deallocating buffers... [0.11s] Loading trace points... [0.089s] Sorting trace points... [3.159s] Computing alignments... [117.688s] Deallocating buffers... [0.211s] Loading trace points... [0.096s] Sorting trace points... [3.702s] Computing alignments... [117.349s] Deallocating buffers... [0.644s] Loading trace points... [0.083s] Sorting trace points... [3.581s] Computing alignments... [120.653s] Deallocating buffers... [0.285s] Loading trace points... [0.085s] Sorting trace points... [3.066s] Computing alignments... [119.588s] Deallocating buffers... [0.483s] Loading trace points... [0.114s] Sorting trace points... [3.615s] Computing alignments... [116.775s] Deallocating buffers... [0.127s] Loading trace points... [0.068s] Sorting trace points... [3.94s] Computing alignments... [117.453s] Deallocating buffers... [0.456s] Loading trace points... [0.069s] Sorting trace points... [3.129s] Computing alignments... [124.936s] Deallocating buffers... [0.126s] Loading trace points... [0.067s] Sorting trace points... [3.975s] Computing alignments... [116.267s] Deallocating buffers... [0.779s] Loading trace points... [0.049s] Sorting trace points... [2.786s] Computing alignments... [119.244s] Deallocating buffers... [0.116s] Loading trace points... [0.001s] Sorting trace points... [2.836s] Computing alignments... [118.72s] Deallocating buffers... [0.236s] Loading trace points... [0.062s] Sorting trace points... [3.678s] Computing alignments... [121.763s] Deallocating buffers... [0.1s] Loading trace points... [0.053s] Sorting trace points... [3.426s] Computing alignments... [119.587s] Deallocating buffers... [0.277s] Loading trace points... [0.043s] Sorting trace points... [3.66s] Computing alignments... [120.01s] Deallocating buffers... [0.39s] Loading trace points... [0.072s] Sorting trace points... [2.619s] Computing alignments... [117.732s] Deallocating buffers... [0.107s] Loading trace points... [0s] Sorting trace points... [3.363s] Computing alignments... [119.582s] Deallocating buffers... [0.683s] Loading trace points... [0s] [1979.86s] Deallocating reference... [0.069s] Loading reference sequences... [28.93s] Masking reference... [30.911s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.082s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.325s] Building query seed array... [2.124s] Computing hash join... [5.125s] Masking low complexity seeds... [0.156s] Searching alignments... [1040.92s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.604s] Building query seed array... [2.388s] Computing hash join... [5.452s] Masking low complexity seeds... [0.16s] Searching alignments... [439.219s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.411s] Building query seed array... [2.494s] Computing hash join... [5.295s] Masking low complexity seeds... [0.163s] Searching alignments... [318.653s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.013s] Building query seed array... [2.061s] Computing hash join... [5.18s] Masking low complexity seeds... [0.16s] Searching alignments... [326.448s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.854s] Building query seed array... [1.882s] Computing hash join... [5.052s] Masking low complexity seeds... [0.161s] Searching alignments... [481.164s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.911s] Building query seed array... [2.163s] Computing hash join... [5.181s] Masking low complexity seeds... [0.144s] Searching alignments... [375.113s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.31s] Building query seed array... [2.261s] Computing hash join... [5.132s] Masking low complexity seeds... [0.15s] Searching alignments... [270.704s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.238s] Building query seed array... [2.039s] Computing hash join... [5.203s] Masking low complexity seeds... [0.158s] Searching alignments... [278.792s] Deallocating memory... [0s] Deallocating buffers... [0.149s] Clearing query masking... [1.509s] Opening temporary output file... [0.029s] Computing alignments... Loading trace points... [17.858s] Sorting trace points... [3.618s] Computing alignments... [112.659s] Deallocating buffers... [0.091s] Loading trace points... [0.069s] Sorting trace points... [4.062s] Computing alignments... [113.532s] Deallocating buffers... [0.627s] Loading trace points... [0.063s] Sorting trace points... [2.61s] Computing alignments... [114.313s] Deallocating buffers... [0.062s] Loading trace points... [0.714s] Sorting trace points... [3.474s] Computing alignments... [116.476s] Deallocating buffers... [0.182s] Loading trace points... [0.002s] Sorting trace points... [3.783s] Computing alignments... [114.192s] Deallocating buffers... [0.301s] Loading trace points... [0.088s] Sorting trace points... [4.043s] Computing alignments... [113.813s] Deallocating buffers... [0.394s] Loading trace points... [0.069s] Sorting trace points... [3.594s] Computing alignments... [114.165s] Deallocating buffers... [0.051s] Loading trace points... [0.084s] Sorting trace points... [3.778s] Computing alignments... [120.758s] Deallocating buffers... [0.196s] Loading trace points... [0.781s] Sorting trace points... [4.43s] Computing alignments... [113.873s] Deallocating buffers... [0.898s] Loading trace points... [0.742s] Sorting trace points... [3.603s] Computing alignments... [116.45s] Deallocating buffers... [0.075s] Loading trace points... [0.882s] Sorting trace points... [2.866s] Computing alignments... [116.312s] Deallocating buffers... [0.359s] Loading trace points... [0.79s] Sorting trace points... [4.089s] Computing alignments... [118.526s] Deallocating buffers... [0.536s] Loading trace points... [0.077s] Sorting trace points... [3.69s] Computing alignments... [115.673s] Deallocating buffers... [0.094s] Loading trace points... [0.056s] Sorting trace points... [3.455s] Computing alignments... [116.565s] Deallocating buffers... [0.391s] Loading trace points... [0.067s] Sorting trace points... [3.732s] Computing alignments... [113.949s] Deallocating buffers... [0.148s] Loading trace points... [0s] Sorting trace points... [2.966s] Computing alignments... [115.02s] Deallocating buffers... [0.246s] Loading trace points... [0s] [1931.16s] Deallocating reference... [0.07s] Loading reference sequences... [254.428s] Masking reference... [31.161s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.849s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.182s] Building query seed array... [2.153s] Computing hash join... [5.67s] Masking low complexity seeds... [0.159s] Searching alignments... [1034.24s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.833s] Building query seed array... [3.027s] Computing hash join... [5.512s] Masking low complexity seeds... [0.159s] Searching alignments... [434.677s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.949s] Building query seed array... [2.763s] Computing hash join... [5.662s] Masking low complexity seeds... [0.163s] Searching alignments... [316.256s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.693s] Building query seed array... [2.392s] Computing hash join... [4.841s] Masking low complexity seeds... [0.164s] Searching alignments... [323.369s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.246s] Building query seed array... [2.033s] Computing hash join... [4.85s] Masking low complexity seeds... [0.143s] Searching alignments... [469.935s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.931s] Building query seed array... [2.48s] Computing hash join... [5.145s] Masking low complexity seeds... [0.149s] Searching alignments... [375.904s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.604s] Building query seed array... [2.564s] Computing hash join... [5.481s] Masking low complexity seeds... [0.165s] Searching alignments... [265.799s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.44s] Building query seed array... [2.116s] Computing hash join... [5.511s] Masking low complexity seeds... [0.166s] Searching alignments... [273.177s] Deallocating memory... [0s] Deallocating buffers... [1.245s] Clearing query masking... [1.478s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [18.165s] Sorting trace points... [3.473s] Computing alignments... [120.942s] Deallocating buffers... [0.145s] Loading trace points... [0.06s] Sorting trace points... [3.525s] Computing alignments... [125.412s] Deallocating buffers... [0.138s] Loading trace points... [0.082s] Sorting trace points... [3.853s] Computing alignments... [123.62s] Deallocating buffers... [0.78s] Loading trace points... [0.109s] Sorting trace points... [2.83s] Computing alignments... [126.204s] Deallocating buffers... [0.103s] Loading trace points... [0.054s] Sorting trace points... [3.101s] Computing alignments... [126.319s] Deallocating buffers... [0.414s] Loading trace points... [0.044s] Sorting trace points... [2.969s] Computing alignments... [122.787s] Deallocating buffers... [0.117s] Loading trace points... [0.058s] Sorting trace points... [2.668s] Computing alignments... [122.219s] Deallocating buffers... [0.139s] Loading trace points... [0.072s] Sorting trace points... [3.178s] Computing alignments... [132.779s] Deallocating buffers... [0.375s] Loading trace points... [0.061s] Sorting trace points... [2.563s] Computing alignments... [122.173s] Deallocating buffers... [0.102s] Loading trace points... [0.058s] Sorting trace points... [2.976s] Computing alignments... [127.801s] Deallocating buffers... [0.107s] Loading trace points... [0.055s] Sorting trace points... [2.942s] Computing alignments... [127.124s] Deallocating buffers... [0.135s] Loading trace points... [0.071s] Sorting trace points... [3.07s] Computing alignments... [127.267s] Deallocating buffers... [0.209s] Loading trace points... [0.047s] Sorting trace points... [2.932s] Computing alignments... [124.423s] Deallocating buffers... [0.185s] Loading trace points... [0.071s] Sorting trace points... [2.697s] Computing alignments... [125.809s] Deallocating buffers... [0.103s] Loading trace points... [0.079s] Sorting trace points... [3.309s] Computing alignments... [122.732s] Deallocating buffers... [0.386s] Loading trace points... [0s] Sorting trace points... [2.87s] Computing alignments... [124.411s] Deallocating buffers... [0.225s] Loading trace points... [0s] [2073.86s] Deallocating reference... [0.08s] Loading reference sequences... [259.346s] Masking reference... [30.912s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.086s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.288s] Building query seed array... [2.2s] Computing hash join... [5.531s] Masking low complexity seeds... [0.158s] Searching alignments... [1022.15s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.48s] Building query seed array... [2.964s] Computing hash join... [4.978s] Masking low complexity seeds... [0.149s] Searching alignments... [429.198s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.818s] Building query seed array... [2.653s] Computing hash join... [4.828s] Masking low complexity seeds... [0.143s] Searching alignments... [312.52s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.112s] Building query seed array... [2.25s] Computing hash join... [5.373s] Masking low complexity seeds... [0.158s] Searching alignments... [322.368s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.478s] Building query seed array... [2.114s] Computing hash join... [4.689s] Masking low complexity seeds... [0.137s] Searching alignments... [472.679s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.589s] Building query seed array... [2.496s] Computing hash join... [5.306s] Masking low complexity seeds... [0.152s] Searching alignments... [372.404s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.553s] Building query seed array... [2.497s] Computing hash join... [5.241s] Masking low complexity seeds... [0.143s] Searching alignments... [266.816s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.285s] Building query seed array... [2.2s] Computing hash join... [4.896s] Masking low complexity seeds... [0.155s] Searching alignments... [277.013s] Deallocating memory... [0s] Deallocating buffers... [0.932s] Clearing query masking... [1.426s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.97s] Sorting trace points... [3.707s] Computing alignments... [118.531s] Deallocating buffers... [0.042s] Loading trace points... [0.082s] Sorting trace points... [2.842s] Computing alignments... [120.103s] Deallocating buffers... [0.258s] Loading trace points... [0.072s] Sorting trace points... [3.393s] Computing alignments... [119.889s] Deallocating buffers... [0.085s] Loading trace points... [0.082s] Sorting trace points... [2.756s] Computing alignments... [125.093s] Deallocating buffers... [0.061s] Loading trace points... [0.05s] Sorting trace points... [3.667s] Computing alignments... [121.803s] Deallocating buffers... [0.531s] Loading trace points... [0.061s] Sorting trace points... [3.286s] Computing alignments... [119.388s] Deallocating buffers... [0.053s] Loading trace points... [0.071s] Sorting trace points... [4.037s] Computing alignments... [119.764s] Deallocating buffers... [0.403s] Loading trace points... [0.073s] Sorting trace points... [3.579s] Computing alignments... [127.541s] Deallocating buffers... [0.279s] Loading trace points... [0.077s] Sorting trace points... [3.549s] Computing alignments... [119.356s] Deallocating buffers... [0.201s] Loading trace points... [0.086s] Sorting trace points... [3.132s] Computing alignments... [123.626s] Deallocating buffers... [0.129s] Loading trace points... [0.072s] Sorting trace points... [4.081s] Computing alignments... [122.558s] Deallocating buffers... [0.406s] Loading trace points... [0.721s] Sorting trace points... [3.877s] Computing alignments... [125.688s] Deallocating buffers... [0.244s] Loading trace points... [0.109s] Sorting trace points... [2.736s] Computing alignments... [122.69s] Deallocating buffers... [0.092s] Loading trace points... [0.062s] Sorting trace points... [4.567s] Computing alignments... [120.9s] Deallocating buffers... [0.865s] Loading trace points... [0.102s] Sorting trace points... [2.771s] Computing alignments... [119.373s] Deallocating buffers... [0.076s] Loading trace points... [0s] Sorting trace points... [3.633s] Computing alignments... [121.171s] Deallocating buffers... [0.091s] Loading trace points... [0s] [2026.74s] Deallocating reference... [0.073s] Loading reference sequences... [30.236s] Masking reference... [31.006s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.01s] Building reference histograms... [32.629s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.213s] Building query seed array... [2.233s] Computing hash join... [5.849s] Masking low complexity seeds... [0.159s] Searching alignments... [1032.68s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.199s] Building query seed array... [2.87s] Computing hash join... [5.885s] Masking low complexity seeds... [0.164s] Searching alignments... [435.482s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.376s] Building query seed array... [2.64s] Computing hash join... [5.983s] Masking low complexity seeds... [0.168s] Searching alignments... [315.026s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.095s] Building query seed array... [2.346s] Computing hash join... [4.939s] Masking low complexity seeds... [0.156s] Searching alignments... [319.591s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.583s] Building query seed array... [2.125s] Computing hash join... [4.833s] Masking low complexity seeds... [0.157s] Searching alignments... [480.99s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.657s] Building query seed array... [2.344s] Computing hash join... [5.429s] Masking low complexity seeds... [0.145s] Searching alignments... [366.848s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.032s] Building query seed array... [2.506s] Computing hash join... [4.943s] Masking low complexity seeds... [0.151s] Searching alignments... [266.614s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.846s] Building query seed array... [2.137s] Computing hash join... [5.49s] Masking low complexity seeds... [0.15s] Searching alignments... [271.983s] Deallocating memory... [0s] Deallocating buffers... [2.02s] Clearing query masking... [1.473s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [19.239s] Sorting trace points... [2.889s] Computing alignments... [116.996s] Deallocating buffers... [0.224s] Loading trace points... [0s] Sorting trace points... [4.424s] Computing alignments... [118.57s] Deallocating buffers... [0.992s] Loading trace points... [0.063s] Sorting trace points... [3.625s] Computing alignments... [119.224s] Deallocating buffers... [0.354s] Loading trace points... [0s] Sorting trace points... [3.665s] Computing alignments... [124.065s] Deallocating buffers... [0.077s] Loading trace points... [0.045s] Sorting trace points... [2.464s] Computing alignments... [120.934s] Deallocating buffers... [0.079s] Loading trace points... [0.076s] Sorting trace points... [3.605s] Computing alignments... [118.786s] Deallocating buffers... [0.167s] Loading trace points... [0.074s] Sorting trace points... [3.72s] Computing alignments... [119.43s] Deallocating buffers... [0.31s] Loading trace points... [0.077s] Sorting trace points... [3.44s] Computing alignments... [126.423s] Deallocating buffers... [0.251s] Loading trace points... [0.07s] Sorting trace points... [3.619s] Computing alignments... [118.932s] Deallocating buffers... [0.124s] Loading trace points... [0.064s] Sorting trace points... [2.833s] Computing alignments... [122.273s] Deallocating buffers... [0.204s] Loading trace points... [0.46s] Sorting trace points... [3.142s] Computing alignments... [120.798s] Deallocating buffers... [0.088s] Loading trace points... [0.07s] Sorting trace points... [3.847s] Computing alignments... [124.423s] Deallocating buffers... [0.628s] Loading trace points... [0.07s] Sorting trace points... [3.665s] Computing alignments... [120.353s] Deallocating buffers... [0.506s] Loading trace points... [0.068s] Sorting trace points... [3.122s] Computing alignments... [121.543s] Deallocating buffers... [0.066s] Loading trace points... [0.11s] Sorting trace points... [3.077s] Computing alignments... [119.386s] Deallocating buffers... [0.408s] Loading trace points... [0s] Sorting trace points... [3.27s] Computing alignments... [120.601s] Deallocating buffers... [0.453s] Loading trace points... [0s] [2012.71s] Deallocating reference... [0.06s] Loading reference sequences... [29.203s] Masking reference... [32.074s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.739s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.988s] Building query seed array... [2.152s] Computing hash join... [6.278s] Masking low complexity seeds... [0.159s] Searching alignments... [1020.9s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.904s] Building query seed array... [2.962s] Computing hash join... [5.761s] Masking low complexity seeds... [0.177s] Searching alignments... [439.487s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.894s] Building query seed array... [2.637s] Computing hash join... [4.97s] Masking low complexity seeds... [0.158s] Searching alignments... [317.873s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.755s] Building query seed array... [2.367s] Computing hash join... [4.693s] Masking low complexity seeds... [0.161s] Searching alignments... [319.677s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.871s] Building query seed array... [2.094s] Computing hash join... [5.181s] Masking low complexity seeds... [0.136s] Searching alignments... [477.857s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.614s] Building query seed array... [2.374s] Computing hash join... [4.841s] Masking low complexity seeds... [0.165s] Searching alignments... [379.117s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.922s] Building query seed array... [2.479s] Computing hash join... [5.718s] Masking low complexity seeds... [0.174s] Searching alignments... [263.187s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.673s] Building query seed array... [2.134s] Computing hash join... [5.22s] Masking low complexity seeds... [0.183s] Searching alignments... [274.576s] Deallocating memory... [0s] Deallocating buffers... [2.172s] Clearing query masking... [1.451s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.687s] Sorting trace points... [3.544s] Computing alignments... [110.515s] Deallocating buffers... [0.062s] Loading trace points... [0.059s] Sorting trace points... [3.243s] Computing alignments... [113.035s] Deallocating buffers... [0.185s] Loading trace points... [0.084s] Sorting trace points... [3.472s] Computing alignments... [113.289s] Deallocating buffers... [0.469s] Loading trace points... [0.08s] Sorting trace points... [3.996s] Computing alignments... [117.629s] Deallocating buffers... [0.461s] Loading trace points... [0.067s] Sorting trace points... [4.016s] Computing alignments... [113.571s] Deallocating buffers... [0.318s] Loading trace points... [0.067s] Sorting trace points... [3.657s] Computing alignments... [113.136s] Deallocating buffers... [0.461s] Loading trace points... [0.087s] Sorting trace points... [2.671s] Computing alignments... [112.966s] Deallocating buffers... [0.078s] Loading trace points... [0.042s] Sorting trace points... [3.929s] Computing alignments... [119.601s] Deallocating buffers... [0.511s] Loading trace points... [0.081s] Sorting trace points... [3.948s] Computing alignments... [112.028s] Deallocating buffers... [0.564s] Loading trace points... [0.82s] Sorting trace points... [4.113s] Computing alignments... [115.198s] Deallocating buffers... [0.691s] Loading trace points... [0.55s] Sorting trace points... [2.775s] Computing alignments... [114.958s] Deallocating buffers... [0.067s] Loading trace points... [0.085s] Sorting trace points... [3.883s] Computing alignments... [116.304s] Deallocating buffers... [0.495s] Loading trace points... [0.064s] Sorting trace points... [2.962s] Computing alignments... [114.882s] Deallocating buffers... [0.215s] Loading trace points... [0.065s] Sorting trace points... [4.067s] Computing alignments... [114.819s] Deallocating buffers... [0.482s] Loading trace points... [0.067s] Sorting trace points... [2.552s] Computing alignments... [113.099s] Deallocating buffers... [0.072s] Loading trace points... [0s] Sorting trace points... [3.416s] Computing alignments... [113.584s] Deallocating buffers... [0.603s] Loading trace points... [0s] [1911.21s] Deallocating reference... [0.062s] Loading reference sequences... [29.932s] Masking reference... [30.875s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.657s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.049s] Building query seed array... [2.198s] Computing hash join... [5.208s] Masking low complexity seeds... [0.151s] Searching alignments... [1028.47s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.458s] Building query seed array... [2.767s] Computing hash join... [5.41s] Masking low complexity seeds... [0.159s] Searching alignments... [433.83s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.537s] Building query seed array... [2.682s] Computing hash join... [5.447s] Masking low complexity seeds... [0.157s] Searching alignments... [322.227s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.031s] Building query seed array... [2.397s] Computing hash join... [5.383s] Masking low complexity seeds... [0.165s] Searching alignments... [324.54s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.964s] Building query seed array... [2.05s] Computing hash join... [5.321s] Masking low complexity seeds... [0.169s] Searching alignments... [485.667s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.357s] Building query seed array... [2.509s] Computing hash join... [5.117s] Masking low complexity seeds... [0.146s] Searching alignments... [383.928s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.155s] Building query seed array... [2.506s] Computing hash join... [5.259s] Masking low complexity seeds... [0.148s] Searching alignments... [263.907s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.136s] Building query seed array... [2.116s] Computing hash join... [5.368s] Masking low complexity seeds... [0.153s] Searching alignments... [272.671s] Deallocating memory... [0s] Deallocating buffers... [0.838s] Clearing query masking... [1.486s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.277s] Sorting trace points... [3.585s] Computing alignments... [112.083s] Deallocating buffers... [0.295s] Loading trace points... [0.047s] Sorting trace points... [4.198s] Computing alignments... [114.918s] Deallocating buffers... [0.898s] Loading trace points... [0.058s] Sorting trace points... [2.889s] Computing alignments... [114.835s] Deallocating buffers... [0.08s] Loading trace points... [0.052s] Sorting trace points... [4.18s] Computing alignments... [117.311s] Deallocating buffers... [0.204s] Loading trace points... [0.047s] Sorting trace points... [3.582s] Computing alignments... [114.74s] Deallocating buffers... [0.229s] Loading trace points... [0.076s] Sorting trace points... [3.412s] Computing alignments... [113.369s] Deallocating buffers... [0.079s] Loading trace points... [0.071s] Sorting trace points... [3.365s] Computing alignments... [113.704s] Deallocating buffers... [0.358s] Loading trace points... [0.073s] Sorting trace points... [3.15s] Computing alignments... [121.508s] Deallocating buffers... [0.107s] Loading trace points... [0.073s] Sorting trace points... [2.934s] Computing alignments... [113.506s] Deallocating buffers... [0.197s] Loading trace points... [0.099s] Sorting trace points... [3.177s] Computing alignments... [116.475s] Deallocating buffers... [0.275s] Loading trace points... [0.085s] Sorting trace points... [3.173s] Computing alignments... [116.434s] Deallocating buffers... [0.175s] Loading trace points... [0.082s] Sorting trace points... [3.196s] Computing alignments... [118.57s] Deallocating buffers... [0.204s] Loading trace points... [0.066s] Sorting trace points... [4.028s] Computing alignments... [116.192s] Deallocating buffers... [0.735s] Loading trace points... [0.069s] Sorting trace points... [2.897s] Computing alignments... [116.685s] Deallocating buffers... [0.099s] Loading trace points... [0.081s] Sorting trace points... [3.876s] Computing alignments... [114.163s] Deallocating buffers... [0.398s] Loading trace points... [0s] Sorting trace points... [2.86s] Computing alignments... [114.779s] Deallocating buffers... [0.097s] Loading trace points... [0s] [1927.58s] Deallocating reference... [0.08s] Loading reference sequences... [29.105s] Masking reference... [32.163s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [33.135s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.458s] Building query seed array... [2.158s] Computing hash join... [5.341s] Masking low complexity seeds... [0.152s] Searching alignments... [1034.52s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.506s] Building query seed array... [2.783s] Computing hash join... [5.414s] Masking low complexity seeds... [0.161s] Searching alignments... [432.321s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.072s] Building query seed array... [2.561s] Computing hash join... [5.527s] Masking low complexity seeds... [0.165s] Searching alignments... [313.542s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.23s] Building query seed array... [2.226s] Computing hash join... [5.481s] Masking low complexity seeds... [0.163s] Searching alignments... [317.944s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.828s] Building query seed array... [1.964s] Computing hash join... [5.295s] Masking low complexity seeds... [0.157s] Searching alignments... [474.209s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.295s] Building query seed array... [2.336s] Computing hash join... [5.281s] Masking low complexity seeds... [0.15s] Searching alignments... [366.295s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.364s] Building query seed array... [2.384s] Computing hash join... [5.324s] Masking low complexity seeds... [0.147s] Searching alignments... [266.708s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.676s] Building query seed array... [1.993s] Computing hash join... [5.31s] Masking low complexity seeds... [0.144s] Searching alignments... [271.71s] Deallocating memory... [0s] Deallocating buffers... [0.449s] Clearing query masking... [1.456s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.719s] Sorting trace points... [3.55s] Computing alignments... [101.076s] Deallocating buffers... [0.079s] Loading trace points... [0.091s] Sorting trace points... [3.567s] Computing alignments... [102.971s] Deallocating buffers... [0.221s] Loading trace points... [0.073s] Sorting trace points... [4.275s] Computing alignments... [103.721s] Deallocating buffers... [0.807s] Loading trace points... [0.086s] Sorting trace points... [3.701s] Computing alignments... [106.63s] Deallocating buffers... [0.07s] Loading trace points... [0.067s] Sorting trace points... [4.004s] Computing alignments... [102.409s] Deallocating buffers... [0.655s] Loading trace points... [0.065s] Sorting trace points... [2.812s] Computing alignments... [102.803s] Deallocating buffers... [0.059s] Loading trace points... [0.058s] Sorting trace points... [4.089s] Computing alignments... [104.78s] Deallocating buffers... [0.656s] Loading trace points... [0.065s] Sorting trace points... [3.691s] Computing alignments... [109.308s] Deallocating buffers... [0.068s] Loading trace points... [0.065s] Sorting trace points... [3.532s] Computing alignments... [103.128s] Deallocating buffers... [0.213s] Loading trace points... [0.07s] Sorting trace points... [4.341s] Computing alignments... [105.786s] Deallocating buffers... [0.849s] Loading trace points... [0.05s] Sorting trace points... [2.59s] Computing alignments... [105.343s] Deallocating buffers... [0.049s] Loading trace points... [0.05s] Sorting trace points... [4.278s] Computing alignments... [106.98s] Deallocating buffers... [0.823s] Loading trace points... [0.067s] Sorting trace points... [3.649s] Computing alignments... [105.484s] Deallocating buffers... [0.07s] Loading trace points... [0.069s] Sorting trace points... [4.162s] Computing alignments... [104.943s] Deallocating buffers... [0.45s] Loading trace points... [0.065s] Sorting trace points... [4.102s] Computing alignments... [103.721s] Deallocating buffers... [0.756s] Loading trace points... [0s] Sorting trace points... [3.751s] Computing alignments... [104.458s] Deallocating buffers... [0.359s] Loading trace points... [0s] [1758.59s] Deallocating reference... [0.07s] Loading reference sequences... [31.615s] Masking reference... [30.887s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [33.374s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.331s] Building query seed array... [2.138s] Computing hash join... [6.174s] Masking low complexity seeds... [0.163s] Searching alignments... [1034.17s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.184s] Building query seed array... [2.374s] Computing hash join... [6.147s] Masking low complexity seeds... [0.156s] Searching alignments... [426.923s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.025s] Building query seed array... [2.476s] Computing hash join... [6.172s] Masking low complexity seeds... [0.16s] Searching alignments... [315.689s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.017s] Building query seed array... [1.952s] Computing hash join... [6.26s] Masking low complexity seeds... [0.163s] Searching alignments... [320.24s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.325s] Building query seed array... [1.906s] Computing hash join... [5.977s] Masking low complexity seeds... [0.147s] Searching alignments... [479.445s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.139s] Building query seed array... [2.147s] Computing hash join... [5.979s] Masking low complexity seeds... [0.146s] Searching alignments... [369.586s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.336s] Building query seed array... [2.271s] Computing hash join... [6.023s] Masking low complexity seeds... [0.148s] Searching alignments... [267.63s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.401s] Building query seed array... [1.973s] Computing hash join... [6.25s] Masking low complexity seeds... [0.164s] Searching alignments... [271.531s] Deallocating memory... [0s] Deallocating buffers... [0.152s] Clearing query masking... [1.575s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.884s] Sorting trace points... [3.248s] Computing alignments... [123.545s] Deallocating buffers... [0.117s] Loading trace points... [0.084s] Sorting trace points... [4.192s] Computing alignments... [126.19s] Deallocating buffers... [0.284s] Loading trace points... [0.073s] Sorting trace points... [3.204s] Computing alignments... [126.174s] Deallocating buffers... [0.244s] Loading trace points... [0.078s] Sorting trace points... [3.099s] Computing alignments... [130.563s] Deallocating buffers... [0.443s] Loading trace points... [0.083s] Sorting trace points... [2.983s] Computing alignments... [127.688s] Deallocating buffers... [0.09s] Loading trace points... [0.06s] Sorting trace points... [2.785s] Computing alignments... [124.635s] Deallocating buffers... [0.207s] Loading trace points... [0.05s] Sorting trace points... [3.4s] Computing alignments... [124.912s] Deallocating buffers... [0.208s] Loading trace points... [0.664s] Sorting trace points... [4.011s] Computing alignments... [133.331s] Deallocating buffers... [0.626s] Loading trace points... [0.06s] Sorting trace points... [3.741s] Computing alignments... [125.401s] Deallocating buffers... [0.526s] Loading trace points... [0.047s] Sorting trace points... [3.41s] Computing alignments... [129.678s] Deallocating buffers... [0.128s] Loading trace points... [0.089s] Sorting trace points... [3.813s] Computing alignments... [128.383s] Deallocating buffers... [0.407s] Loading trace points... [0.155s] Sorting trace points... [3.822s] Computing alignments... [130.327s] Deallocating buffers... [0.67s] Loading trace points... [0.069s] Sorting trace points... [3.73s] Computing alignments... [128.628s] Deallocating buffers... [0.461s] Loading trace points... [0.113s] Sorting trace points... [3.99s] Computing alignments... [129.123s] Deallocating buffers... [0.713s] Loading trace points... [0.065s] Sorting trace points... [3.897s] Computing alignments... [126.697s] Deallocating buffers... [0.528s] Loading trace points... [0s] Sorting trace points... [3.542s] Computing alignments... [128.17s] Deallocating buffers... [0.146s] Loading trace points... [0s] [2125.91s] Deallocating reference... [0.07s] Loading reference sequences... [250.223s] Masking reference... [31.093s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.781s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.143s] Building query seed array... [2.135s] Computing hash join... [5.826s] Masking low complexity seeds... [0.171s] Searching alignments... [1032.14s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.062s] Building query seed array... [2.405s] Computing hash join... [5.981s] Masking low complexity seeds... [0.166s] Searching alignments... [434.673s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.408s] Building query seed array... [2.471s] Computing hash join... [6.076s] Masking low complexity seeds... [0.159s] Searching alignments... [313.998s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.668s] Building query seed array... [2.04s] Computing hash join... [5.954s] Masking low complexity seeds... [0.162s] Searching alignments... [322.042s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.232s] Building query seed array... [1.884s] Computing hash join... [5.886s] Masking low complexity seeds... [0.143s] Searching alignments... [477.493s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.311s] Building query seed array... [2.167s] Computing hash join... [5.92s] Masking low complexity seeds... [0.162s] Searching alignments... [371.718s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.768s] Building query seed array... [2.239s] Computing hash join... [5.985s] Masking low complexity seeds... [0.155s] Searching alignments... [266.411s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.682s] Building query seed array... [1.908s] Computing hash join... [5.967s] Masking low complexity seeds... [0.156s] Searching alignments... [272.317s] Deallocating memory... [0s] Deallocating buffers... [0.168s] Clearing query masking... [1.48s] Opening temporary output file... [0.251s] Computing alignments... Loading trace points... [18.108s] Sorting trace points... [3.673s] Computing alignments... [119.835s] Deallocating buffers... [0.142s] Loading trace points... [0.057s] Sorting trace points... [3.505s] Computing alignments... [123.43s] Deallocating buffers... [0.14s] Loading trace points... [0.05s] Sorting trace points... [4.365s] Computing alignments... [121.941s] Deallocating buffers... [0.421s] Loading trace points... [0.052s] Sorting trace points... [2.614s] Computing alignments... [128.393s] Deallocating buffers... [0.108s] Loading trace points... [0.057s] Sorting trace points... [3.36s] Computing alignments... [124.985s] Deallocating buffers... [0.091s] Loading trace points... [0.086s] Sorting trace points... [4.03s] Computing alignments... [121.14s] Deallocating buffers... [0.563s] Loading trace points... [0.089s] Sorting trace points... [3.407s] Computing alignments... [121.356s] Deallocating buffers... [0.251s] Loading trace points... [0.086s] Sorting trace points... [2.708s] Computing alignments... [131.874s] Deallocating buffers... [0.132s] Loading trace points... [0.08s] Sorting trace points... [3.943s] Computing alignments... [121.879s] Deallocating buffers... [0.696s] Loading trace points... [0.072s] Sorting trace points... [3.484s] Computing alignments... [124.453s] Deallocating buffers... [0.131s] Loading trace points... [0.09s] Sorting trace points... [2.721s] Computing alignments... [124.309s] Deallocating buffers... [0.153s] Loading trace points... [0.092s] Sorting trace points... [3.761s] Computing alignments... [126.764s] Deallocating buffers... [0.64s] Loading trace points... [0.102s] Sorting trace points... [2.703s] Computing alignments... [123.611s] Deallocating buffers... [0.142s] Loading trace points... [0.079s] Sorting trace points... [3.535s] Computing alignments... [123.855s] Deallocating buffers... [0.652s] Loading trace points... [0.002s] Sorting trace points... [3.158s] Computing alignments... [122.366s] Deallocating buffers... [0.319s] Loading trace points... [0s] Sorting trace points... [3.419s] Computing alignments... [123.46s] Deallocating buffers... [0.438s] Loading trace points... [0s] [2062.31s] Deallocating reference... [0.069s] Loading reference sequences... [32.936s] Masking reference... [31.944s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.405s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.509s] Building query seed array... [2.215s] Computing hash join... [6.466s] Masking low complexity seeds... [0.16s] Searching alignments... [1026.28s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.365s] Building query seed array... [2.936s] Computing hash join... [5.965s] Masking low complexity seeds... [0.18s] Searching alignments... [433.346s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.305s] Building query seed array... [2.641s] Computing hash join... [5.116s] Masking low complexity seeds... [0.161s] Searching alignments... [319.437s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.711s] Building query seed array... [2.302s] Computing hash join... [5.016s] Masking low complexity seeds... [0.175s] Searching alignments... [317.551s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.873s] Building query seed array... [2.057s] Computing hash join... [5.238s] Masking low complexity seeds... [0.157s] Searching alignments... [480.516s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.871s] Building query seed array... [2.314s] Computing hash join... [5.764s] Masking low complexity seeds... [0.161s] Searching alignments... [372.237s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.066s] Building query seed array... [2.46s] Computing hash join... [5.54s] Masking low complexity seeds... [0.149s] Searching alignments... [265.22s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.688s] Building query seed array... [2.137s] Computing hash join... [4.981s] Masking low complexity seeds... [0.171s] Searching alignments... [274.27s] Deallocating memory... [0s] Deallocating buffers... [1.85s] Clearing query masking... [1.461s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [17.947s] Sorting trace points... [3.553s] Computing alignments... [112.029s] Deallocating buffers... [0.072s] Loading trace points... [0.047s] Sorting trace points... [3.119s] Computing alignments... [114.245s] Deallocating buffers... [0.292s] Loading trace points... [0.057s] Sorting trace points... [3.678s] Computing alignments... [113.4s] Deallocating buffers... [0.217s] Loading trace points... [0.048s] Sorting trace points... [3.293s] Computing alignments... [117.356s] Deallocating buffers... [0.422s] Loading trace points... [0.066s] Sorting trace points... [3.401s] Computing alignments... [115.999s] Deallocating buffers... [0.444s] Loading trace points... [0.083s] Sorting trace points... [2.921s] Computing alignments... [113.595s] Deallocating buffers... [0.416s] Loading trace points... [0.089s] Sorting trace points... [3.793s] Computing alignments... [113.646s] Deallocating buffers... [0.548s] Loading trace points... [0.078s] Sorting trace points... [3.309s] Computing alignments... [119.553s] Deallocating buffers... [0.329s] Loading trace points... [0.075s] Sorting trace points... [4.129s] Computing alignments... [113.46s] Deallocating buffers... [0.314s] Loading trace points... [0.194s] Sorting trace points... [3.513s] Computing alignments... [116.281s] Deallocating buffers... [0.215s] Loading trace points... [0.304s] Sorting trace points... [3.402s] Computing alignments... [115.297s] Deallocating buffers... [0.059s] Loading trace points... [0.903s] Sorting trace points... [3.06s] Computing alignments... [118.087s] Deallocating buffers... [0.392s] Loading trace points... [0.085s] Sorting trace points... [3.562s] Computing alignments... [115.7s] Deallocating buffers... [0.501s] Loading trace points... [0.076s] Sorting trace points... [3.967s] Computing alignments... [115.795s] Deallocating buffers... [0.51s] Loading trace points... [0.112s] Sorting trace points... [2.795s] Computing alignments... [114.293s] Deallocating buffers... [0.066s] Loading trace points... [0s] Sorting trace points... [4.039s] Computing alignments... [114.535s] Deallocating buffers... [0.646s] Loading trace points... [0s] [1924.52s] Deallocating reference... [0.072s] Loading reference sequences... [23.248s] Masking reference... [26.03s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.166s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.142s] Building query seed array... [2.075s] Computing hash join... [3.951s] Masking low complexity seeds... [0.141s] Searching alignments... [828.819s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.064s] Building query seed array... [2.457s] Computing hash join... [4.108s] Masking low complexity seeds... [0.141s] Searching alignments... [344.521s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.758s] Building query seed array... [2.492s] Computing hash join... [4.508s] Masking low complexity seeds... [0.153s] Searching alignments... [256.734s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.364s] Building query seed array... [2.093s] Computing hash join... [3.887s] Masking low complexity seeds... [0.142s] Searching alignments... [261.728s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.073s] Building query seed array... [1.827s] Computing hash join... [3.87s] Masking low complexity seeds... [0.132s] Searching alignments... [385.647s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.046s] Building query seed array... [2.157s] Computing hash join... [4.074s] Masking low complexity seeds... [0.136s] Searching alignments... [294.43s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.596s] Building query seed array... [2.268s] Computing hash join... [3.846s] Masking low complexity seeds... [0.136s] Searching alignments... [211.012s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.248s] Building query seed array... [1.919s] Computing hash join... [4.26s] Masking low complexity seeds... [0.142s] Searching alignments... [218.543s] Deallocating memory... [0s] Deallocating buffers... [0.125s] Clearing query masking... [1.598s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.825s] Sorting trace points... [2.359s] Computing alignments... [85.915s] Deallocating buffers... [0.055s] Loading trace points... [0.085s] Sorting trace points... [3.043s] Computing alignments... [87.715s] Deallocating buffers... [0.281s] Loading trace points... [0.071s] Sorting trace points... [2.8s] Computing alignments... [88.33s] Deallocating buffers... [0.059s] Loading trace points... [0.069s] Sorting trace points... [2.997s] Computing alignments... [90.444s] Deallocating buffers... [0.341s] Loading trace points... [0.08s] Sorting trace points... [2.689s] Computing alignments... [88.526s] Deallocating buffers... [0.351s] Loading trace points... [0.05s] Sorting trace points... [2.147s] Computing alignments... [87.753s] Deallocating buffers... [0.041s] Loading trace points... [0.001s] Sorting trace points... [3.152s] Computing alignments... [88.407s] Deallocating buffers... [0.43s] Loading trace points... [0.081s] Sorting trace points... [2.607s] Computing alignments... [93.97s] Deallocating buffers... [0.159s] Loading trace points... [0.085s] Sorting trace points... [2.517s] Computing alignments... [87.553s] Deallocating buffers... [0.053s] Loading trace points... [0.049s] Sorting trace points... [3.381s] Computing alignments... [89.752s] Deallocating buffers... [0.423s] Loading trace points... [0.072s] Sorting trace points... [3.187s] Computing alignments... [89.647s] Deallocating buffers... [0.478s] Loading trace points... [0.002s] Sorting trace points... [2.516s] Computing alignments... [91.172s] Deallocating buffers... [0.232s] Loading trace points... [0.05s] Sorting trace points... [2.88s] Computing alignments... [89.216s] Deallocating buffers... [0.064s] Loading trace points... [0.066s] Sorting trace points... [2.523s] Computing alignments... [90.186s] Deallocating buffers... [0.053s] Loading trace points... [0.043s] Sorting trace points... [2.434s] Computing alignments... [87.289s] Deallocating buffers... [0.125s] Loading trace points... [0s] Sorting trace points... [2.931s] Computing alignments... [88.816s] Deallocating buffers... [0.071s] Loading trace points... [0s] [1487.8s] Deallocating reference... [0.081s] Loading reference sequences... [0.077s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [6930.72s] [6930.72s] Deallocating queries... [0.067s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.863s] [3.599s] Closing the database... [0s] Cleaning up... [0s] Total time = 86558.6s Reported 7724530530 pairwise alignments, 7724530530 HSPs. 6028642 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-21.trimmed.R1.fastq.gz complete: CH05-21.trimmed.R1.blastx.meganized.daa Now MEGANizing CH05-21.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-21.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (287.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11,608.5s) Total reads: 6,028,642 With hits: 6,028,642 Alignments: 5,119,317,585 Assig. Taxonomy: 3,109,190 Assig. SEED: 92,855 Assig. EGGNOG: 13,884 Assig. GTDB: 157,985 Assig. EC: 598,532 Assig. INTERPRO2GO: 1,533,936 MinSupport set to: 3014 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 4,769 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (17.1s) Min-supp. changes: 2,956 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.9s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 154 Class. SEED: 462 Class. EGGNOG: 1,382 Class. GTDB: 42 Class. EC: 2,214 Class. INTERPRO2GO: 8,476 Total time: 11,930s Peak memory: 45.2 of 195.3G MEGANization of CH05-21.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-21.trimmed.R2.fastq.gz... ba251da28fb0f2bdfaf4a264315a321c /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-21.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-21.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.362s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.725s] Opening the output file... [0s] Loading query sequences... [92.771s] Masking queries... [23.554s] Algorithm: Double-indexed Building query histograms... [19.199s] Loading reference sequences... [29.475s] Masking reference... [32.137s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.172s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.425s] Building query seed array... [2.101s] Computing hash join... [5.893s] Masking low complexity seeds... [0.159s] Searching alignments... [1071.11s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.315s] Building query seed array... [2.614s] Computing hash join... [5.729s] Masking low complexity seeds... [0.175s] Searching alignments... [448.59s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.862s] Building query seed array... [2.719s] Computing hash join... [5.757s] Masking low complexity seeds... [0.167s] Searching alignments... [325.846s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.324s] Building query seed array... [2.293s] Computing hash join... [4.753s] Masking low complexity seeds... [0.146s] Searching alignments... [331.951s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.972s] Building query seed array... [1.997s] Computing hash join... [5.379s] Masking low complexity seeds... [0.153s] Searching alignments... [505.772s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.849s] Building query seed array... [2.406s] Computing hash join... [4.941s] Masking low complexity seeds... [0.142s] Searching alignments... [384.923s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.311s] Building query seed array... [2.404s] Computing hash join... [5.055s] Masking low complexity seeds... [0.148s] Searching alignments... [274.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.111s] Building query seed array... [2.148s] Computing hash join... [4.71s] Masking low complexity seeds... [0.147s] Searching alignments... [289.016s] Deallocating memory... [0s] Deallocating buffers... [0.869s] Clearing query masking... [1.462s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.623s] Sorting trace points... [2.833s] Computing alignments... [113.516s] Deallocating buffers... [0.09s] Loading trace points... [0.101s] Sorting trace points... [4.26s] Computing alignments... [112.478s] Deallocating buffers... [0.231s] Loading trace points... [0.082s] Sorting trace points... [3.676s] Computing alignments... [114.627s] Deallocating buffers... [0.457s] Loading trace points... [0.045s] Sorting trace points... [3.008s] Computing alignments... [115.097s] Deallocating buffers... [0.054s] Loading trace points... [0.067s] Sorting trace points... [4.144s] Computing alignments... [113.509s] Deallocating buffers... [0.545s] Loading trace points... [0.001s] Sorting trace points... [3.047s] Computing alignments... [113.624s] Deallocating buffers... [0.072s] Loading trace points... [0.053s] Sorting trace points... [3.512s] Computing alignments... [114.846s] Deallocating buffers... [0.483s] Loading trace points... [0.086s] Sorting trace points... [3.031s] Computing alignments... [114.243s] Deallocating buffers... [0.069s] Loading trace points... [0.094s] Sorting trace points... [2.946s] Computing alignments... [112.455s] Deallocating buffers... [0.078s] Loading trace points... [0.059s] Sorting trace points... [3.501s] Computing alignments... [113.652s] Deallocating buffers... [0.262s] Loading trace points... [0.064s] Sorting trace points... [3.665s] Computing alignments... [112.429s] Deallocating buffers... [0.151s] Loading trace points... [0.001s] Sorting trace points... [3.414s] Computing alignments... [113.335s] Deallocating buffers... [0.077s] Loading trace points... [0.051s] Sorting trace points... [3.746s] Computing alignments... [115.517s] Deallocating buffers... [0.09s] Loading trace points... [0.051s] Sorting trace points... [4.353s] Computing alignments... [113.493s] Deallocating buffers... [0.767s] Loading trace points... [0.059s] Sorting trace points... [3.544s] Computing alignments... [111.196s] Deallocating buffers... [0.046s] Loading trace points... [0s] Sorting trace points... [3.599s] Computing alignments... [109.473s] Deallocating buffers... [0.162s] Loading trace points... [0s] [1892.89s] Deallocating reference... [0.061s] Loading reference sequences... [29.505s] Masking reference... [30.879s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.753s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.303s] Building query seed array... [2.073s] Computing hash join... [5.605s] Masking low complexity seeds... [0.161s] Searching alignments... [1054.74s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.439s] Building query seed array... [2.777s] Computing hash join... [5.671s] Masking low complexity seeds... [0.172s] Searching alignments... [448.347s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.598s] Building query seed array... [2.792s] Computing hash join... [5.328s] Masking low complexity seeds... [0.159s] Searching alignments... [317.053s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.585s] Building query seed array... [2.348s] Computing hash join... [4.728s] Masking low complexity seeds... [0.148s] Searching alignments... [327.608s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.391s] Building query seed array... [2.135s] Computing hash join... [4.787s] Masking low complexity seeds... [0.166s] Searching alignments... [495.074s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.032s] Building query seed array... [2.359s] Computing hash join... [4.587s] Masking low complexity seeds... [0.128s] Searching alignments... [387.4s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.65s] Building query seed array... [2.545s] Computing hash join... [4.762s] Masking low complexity seeds... [0.141s] Searching alignments... [273.943s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.327s] Building query seed array... [2.177s] Computing hash join... [4.911s] Masking low complexity seeds... [0.146s] Searching alignments... [284.401s] Deallocating memory... [0s] Deallocating buffers... [1.089s] Clearing query masking... [1.507s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.314s] Sorting trace points... [3.646s] Computing alignments... [121.441s] Deallocating buffers... [0.071s] Loading trace points... [0.093s] Sorting trace points... [3.049s] Computing alignments... [118.338s] Deallocating buffers... [0.232s] Loading trace points... [0.092s] Sorting trace points... [3.389s] Computing alignments... [121.441s] Deallocating buffers... [0.267s] Loading trace points... [0.061s] Sorting trace points... [2.668s] Computing alignments... [119.547s] Deallocating buffers... [0.098s] Loading trace points... [0.09s] Sorting trace points... [3.85s] Computing alignments... [119.338s] Deallocating buffers... [0.303s] Loading trace points... [0.035s] Sorting trace points... [3.756s] Computing alignments... [120.026s] Deallocating buffers... [0.418s] Loading trace points... [0.043s] Sorting trace points... [3.642s] Computing alignments... [121.461s] Deallocating buffers... [0.138s] Loading trace points... [0.213s] Sorting trace points... [3.892s] Computing alignments... [122.224s] Deallocating buffers... [0.63s] Loading trace points... [0.065s] Sorting trace points... [3.268s] Computing alignments... [117.04s] Deallocating buffers... [0.118s] Loading trace points... [0.062s] Sorting trace points... [3.163s] Computing alignments... [120.212s] Deallocating buffers... [0.377s] Loading trace points... [0.047s] Sorting trace points... [2.72s] Computing alignments... [117.862s] Deallocating buffers... [0.105s] Loading trace points... [0.001s] Sorting trace points... [3.233s] Computing alignments... [118.999s] Deallocating buffers... [0.371s] Loading trace points... [0.063s] Sorting trace points... [3.627s] Computing alignments... [122.193s] Deallocating buffers... [0.161s] Loading trace points... [0.07s] Sorting trace points... [3.741s] Computing alignments... [118.95s] Deallocating buffers... [0.411s] Loading trace points... [0.056s] Sorting trace points... [3.363s] Computing alignments... [116.129s] Deallocating buffers... [0.117s] Loading trace points... [0s] Sorting trace points... [2.875s] Computing alignments... [115.799s] Deallocating buffers... [0.116s] Loading trace points... [0s] [1988.26s] Deallocating reference... [0.073s] Loading reference sequences... [29.723s] Masking reference... [31.153s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.773s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.319s] Building query seed array... [2.145s] Computing hash join... [5.325s] Masking low complexity seeds... [0.154s] Searching alignments... [1065.27s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.55s] Building query seed array... [2.966s] Computing hash join... [5.483s] Masking low complexity seeds... [0.152s] Searching alignments... [445.222s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.248s] Building query seed array... [2.701s] Computing hash join... [5.46s] Masking low complexity seeds... [0.183s] Searching alignments... [327.095s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.808s] Building query seed array... [2.331s] Computing hash join... [4.817s] Masking low complexity seeds... [0.148s] Searching alignments... [329.652s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.713s] Building query seed array... [1.98s] Computing hash join... [5.238s] Masking low complexity seeds... [0.143s] Searching alignments... [497.901s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.918s] Building query seed array... [2.245s] Computing hash join... [5.25s] Masking low complexity seeds... [0.153s] Searching alignments... [387.916s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.647s] Building query seed array... [2.569s] Computing hash join... [4.675s] Masking low complexity seeds... [0.136s] Searching alignments... [274.616s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.963s] Building query seed array... [2.082s] Computing hash join... [5.232s] Masking low complexity seeds... [0.147s] Searching alignments... [284.228s] Deallocating memory... [0s] Deallocating buffers... [0.62s] Clearing query masking... [1.554s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [18.469s] Sorting trace points... [3.187s] Computing alignments... [120.435s] Deallocating buffers... [0.121s] Loading trace points... [0.085s] Sorting trace points... [3.863s] Computing alignments... [117.343s] Deallocating buffers... [0.629s] Loading trace points... [0.104s] Sorting trace points... [3.919s] Computing alignments... [123.275s] Deallocating buffers... [0.242s] Loading trace points... [0.1s] Sorting trace points... [3.199s] Computing alignments... [122.638s] Deallocating buffers... [0.187s] Loading trace points... [0.821s] Sorting trace points... [3.256s] Computing alignments... [120.764s] Deallocating buffers... [0.364s] Loading trace points... [0.082s] Sorting trace points... [2.846s] Computing alignments... [120.307s] Deallocating buffers... [0.089s] Loading trace points... [0.085s] Sorting trace points... [3.09s] Computing alignments... [122.206s] Deallocating buffers... [0.185s] Loading trace points... [0.056s] Sorting trace points... [3.117s] Computing alignments... [123.04s] Deallocating buffers... [0.118s] Loading trace points... [0.062s] Sorting trace points... [3.65s] Computing alignments... [117.405s] Deallocating buffers... [0.331s] Loading trace points... [0.081s] Sorting trace points... [2.976s] Computing alignments... [120.845s] Deallocating buffers... [0.262s] Loading trace points... [0.082s] Sorting trace points... [3.695s] Computing alignments... [119.566s] Deallocating buffers... [0.302s] Loading trace points... [0.072s] Sorting trace points... [3.397s] Computing alignments... [118.439s] Deallocating buffers... [0.345s] Loading trace points... [0.122s] Sorting trace points... [3.126s] Computing alignments... [122.43s] Deallocating buffers... [0.166s] Loading trace points... [0.079s] Sorting trace points... [3.984s] Computing alignments... [118.958s] Deallocating buffers... [0.593s] Loading trace points... [0.092s] Sorting trace points... [3.535s] Computing alignments... [115.082s] Deallocating buffers... [0.083s] Loading trace points... [0s] Sorting trace points... [2.8s] Computing alignments... [115.36s] Deallocating buffers... [0.099s] Loading trace points... [0s] [1996.41s] Deallocating reference... [0.069s] Loading reference sequences... [29.912s] Masking reference... [30.955s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.302s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.157s] Building query seed array... [2.124s] Computing hash join... [5.301s] Masking low complexity seeds... [0.157s] Searching alignments... [1076.98s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.011s] Building query seed array... [2.428s] Computing hash join... [5.439s] Masking low complexity seeds... [0.156s] Searching alignments... [446.364s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.858s] Building query seed array... [2.537s] Computing hash join... [5.183s] Masking low complexity seeds... [0.154s] Searching alignments... [324.44s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.907s] Building query seed array... [2.041s] Computing hash join... [5.275s] Masking low complexity seeds... [0.161s] Searching alignments... [331.744s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.464s] Building query seed array... [2.017s] Computing hash join... [5.058s] Masking low complexity seeds... [0.137s] Searching alignments... [505.689s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.376s] Building query seed array... [2.159s] Computing hash join... [4.98s] Masking low complexity seeds... [0.138s] Searching alignments... [394.55s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.389s] Building query seed array... [2.307s] Computing hash join... [5.078s] Masking low complexity seeds... [0.164s] Searching alignments... [279.88s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.811s] Building query seed array... [1.932s] Computing hash join... [5.287s] Masking low complexity seeds... [0.156s] Searching alignments... [288.058s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [1.555s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.492s] Sorting trace points... [3.657s] Computing alignments... [117.009s] Deallocating buffers... [0.147s] Loading trace points... [0.111s] Sorting trace points... [3.66s] Computing alignments... [114.576s] Deallocating buffers... [0.348s] Loading trace points... [0.07s] Sorting trace points... [4.295s] Computing alignments... [117.665s] Deallocating buffers... [0.556s] Loading trace points... [0.061s] Sorting trace points... [2.791s] Computing alignments... [118.224s] Deallocating buffers... [0.072s] Loading trace points... [1.069s] Sorting trace points... [3.558s] Computing alignments... [116.668s] Deallocating buffers... [0.545s] Loading trace points... [1.067s] Sorting trace points... [4.281s] Computing alignments... [116.156s] Deallocating buffers... [0.365s] Loading trace points... [0.075s] Sorting trace points... [3.423s] Computing alignments... [118.21s] Deallocating buffers... [0.397s] Loading trace points... [0.076s] Sorting trace points... [3.575s] Computing alignments... [117.804s] Deallocating buffers... [0.258s] Loading trace points... [0.084s] Sorting trace points... [2.862s] Computing alignments... [114.101s] Deallocating buffers... [0.089s] Loading trace points... [0.055s] Sorting trace points... [2.815s] Computing alignments... [117.249s] Deallocating buffers... [0.34s] Loading trace points... [0.047s] Sorting trace points... [3.786s] Computing alignments... [115.729s] Deallocating buffers... [0.308s] Loading trace points... [0.085s] Sorting trace points... [2.939s] Computing alignments... [115.953s] Deallocating buffers... [0.12s] Loading trace points... [0.002s] Sorting trace points... [3.267s] Computing alignments... [118.517s] Deallocating buffers... [0.234s] Loading trace points... [0.087s] Sorting trace points... [2.727s] Computing alignments... [116.364s] Deallocating buffers... [0.058s] Loading trace points... [0.038s] Sorting trace points... [3.576s] Computing alignments... [113.317s] Deallocating buffers... [0.343s] Loading trace points... [0s] Sorting trace points... [3.641s] Computing alignments... [112.211s] Deallocating buffers... [0.268s] Loading trace points... [0s] [1940.62s] Deallocating reference... [0.067s] Loading reference sequences... [256.04s] Masking reference... [30.979s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.174s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.122s] Building query seed array... [2.134s] Computing hash join... [5.539s] Masking low complexity seeds... [0.16s] Searching alignments... [1066.7s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.481s] Building query seed array... [2.704s] Computing hash join... [5.042s] Masking low complexity seeds... [0.153s] Searching alignments... [446.479s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.92s] Building query seed array... [2.848s] Computing hash join... [5.671s] Masking low complexity seeds... [0.148s] Searching alignments... [321.77s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.477s] Building query seed array... [2.287s] Computing hash join... [5.188s] Masking low complexity seeds... [0.172s] Searching alignments... [330.23s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.694s] Building query seed array... [2.083s] Computing hash join... [5.366s] Masking low complexity seeds... [0.151s] Searching alignments... [498.793s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.869s] Building query seed array... [2.367s] Computing hash join... [4.752s] Masking low complexity seeds... [0.13s] Searching alignments... [394.767s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.471s] Building query seed array... [2.605s] Computing hash join... [5.317s] Masking low complexity seeds... [0.154s] Searching alignments... [274.544s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.642s] Building query seed array... [2.188s] Computing hash join... [4.825s] Masking low complexity seeds... [0.133s] Searching alignments... [282.204s] Deallocating memory... [0.005s] Deallocating buffers... [1.263s] Clearing query masking... [1.485s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.437s] Sorting trace points... [3.588s] Computing alignments... [126.801s] Deallocating buffers... [0.159s] Loading trace points... [0.088s] Sorting trace points... [3.58s] Computing alignments... [125.194s] Deallocating buffers... [0.586s] Loading trace points... [0.048s] Sorting trace points... [3.493s] Computing alignments... [128.69s] Deallocating buffers... [0.374s] Loading trace points... [0.18s] Sorting trace points... [2.758s] Computing alignments... [127.072s] Deallocating buffers... [0.136s] Loading trace points... [0.051s] Sorting trace points... [2.816s] Computing alignments... [126.478s] Deallocating buffers... [0.119s] Loading trace points... [0.064s] Sorting trace points... [3.022s] Computing alignments... [126.322s] Deallocating buffers... [0.304s] Loading trace points... [0.055s] Sorting trace points... [3.054s] Computing alignments... [127.534s] Deallocating buffers... [0.124s] Loading trace points... [0.121s] Sorting trace points... [2.748s] Computing alignments... [128.369s] Deallocating buffers... [0.131s] Loading trace points... [0.046s] Sorting trace points... [2.829s] Computing alignments... [123.183s] Deallocating buffers... [0.279s] Loading trace points... [0.06s] Sorting trace points... [3.741s] Computing alignments... [127.551s] Deallocating buffers... [0.325s] Loading trace points... [0.078s] Sorting trace points... [2.863s] Computing alignments... [125.406s] Deallocating buffers... [0.205s] Loading trace points... [0.134s] Sorting trace points... [3.314s] Computing alignments... [123.549s] Deallocating buffers... [0.306s] Loading trace points... [0.082s] Sorting trace points... [3.065s] Computing alignments... [128.284s] Deallocating buffers... [0.156s] Loading trace points... [0.105s] Sorting trace points... [2.859s] Computing alignments... [124.472s] Deallocating buffers... [0.142s] Loading trace points... [0.069s] Sorting trace points... [3.838s] Computing alignments... [121.276s] Deallocating buffers... [0.354s] Loading trace points... [0s] Sorting trace points... [2.571s] Computing alignments... [121.212s] Deallocating buffers... [0.127s] Loading trace points... [0s] [2085.18s] Deallocating reference... [0.068s] Loading reference sequences... [263.131s] Masking reference... [30.893s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.68s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.51s] Building query seed array... [2.219s] Computing hash join... [5.403s] Masking low complexity seeds... [0.149s] Searching alignments... [1057.23s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.069s] Building query seed array... [2.563s] Computing hash join... [5.417s] Masking low complexity seeds... [0.15s] Searching alignments... [442.846s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.762s] Building query seed array... [2.574s] Computing hash join... [5.38s] Masking low complexity seeds... [0.171s] Searching alignments... [322.472s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.258s] Building query seed array... [2.285s] Computing hash join... [5.031s] Masking low complexity seeds... [0.156s] Searching alignments... [325.943s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.997s] Building query seed array... [1.961s] Computing hash join... [5.201s] Masking low complexity seeds... [0.147s] Searching alignments... [490.74s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.525s] Building query seed array... [2.277s] Computing hash join... [4.77s] Masking low complexity seeds... [0.135s] Searching alignments... [386.523s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.343s] Building query seed array... [2.372s] Computing hash join... [5.252s] Masking low complexity seeds... [0.147s] Searching alignments... [275.254s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.85s] Building query seed array... [1.991s] Computing hash join... [5.194s] Masking low complexity seeds... [0.148s] Searching alignments... [288.721s] Deallocating memory... [0s] Deallocating buffers... [0.388s] Clearing query masking... [1.479s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [18.55s] Sorting trace points... [3.65s] Computing alignments... [123.684s] Deallocating buffers... [0.185s] Loading trace points... [0.093s] Sorting trace points... [4.327s] Computing alignments... [122.348s] Deallocating buffers... [0.141s] Loading trace points... [0.075s] Sorting trace points... [3.397s] Computing alignments... [126.123s] Deallocating buffers... [0.483s] Loading trace points... [0.049s] Sorting trace points... [4.389s] Computing alignments... [125.006s] Deallocating buffers... [0.535s] Loading trace points... [0.089s] Sorting trace points... [3.857s] Computing alignments... [123.255s] Deallocating buffers... [0.51s] Loading trace points... [0.077s] Sorting trace points... [2.776s] Computing alignments... [123.396s] Deallocating buffers... [0.065s] Loading trace points... [0.04s] Sorting trace points... [3.874s] Computing alignments... [125.32s] Deallocating buffers... [0.472s] Loading trace points... [0.061s] Sorting trace points... [3.594s] Computing alignments... [126.424s] Deallocating buffers... [0.32s] Loading trace points... [0.072s] Sorting trace points... [3.61s] Computing alignments... [121.474s] Deallocating buffers... [0.093s] Loading trace points... [0.059s] Sorting trace points... [4.304s] Computing alignments... [125.395s] Deallocating buffers... [0.761s] Loading trace points... [0.051s] Sorting trace points... [2.912s] Computing alignments... [122.097s] Deallocating buffers... [0.081s] Loading trace points... [0.068s] Sorting trace points... [2.791s] Computing alignments... [122.419s] Deallocating buffers... [0.194s] Loading trace points... [0.042s] Sorting trace points... [2.701s] Computing alignments... [125.246s] Deallocating buffers... [0.079s] Loading trace points... [0.001s] Sorting trace points... [2.64s] Computing alignments... [122.102s] Deallocating buffers... [0.084s] Loading trace points... [0.065s] Sorting trace points... [3.96s] Computing alignments... [119.04s] Deallocating buffers... [0.538s] Loading trace points... [0s] Sorting trace points... [3.779s] Computing alignments... [117.777s] Deallocating buffers... [0.541s] Loading trace points... [0s] [2052.29s] Deallocating reference... [0.073s] Loading reference sequences... [29.321s] Masking reference... [30.891s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.48s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.564s] Building query seed array... [2.24s] Computing hash join... [5.716s] Masking low complexity seeds... [0.15s] Searching alignments... [1072.75s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.508s] Building query seed array... [2.856s] Computing hash join... [5.776s] Masking low complexity seeds... [0.158s] Searching alignments... [443.185s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.632s] Building query seed array... [2.659s] Computing hash join... [5.63s] Masking low complexity seeds... [0.157s] Searching alignments... [321.995s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.413s] Building query seed array... [2.183s] Computing hash join... [4.713s] Masking low complexity seeds... [0.151s] Searching alignments... [320.54s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.429s] Building query seed array... [2.024s] Computing hash join... [4.677s] Masking low complexity seeds... [0.155s] Searching alignments... [494.661s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.187s] Building query seed array... [2.378s] Computing hash join... [4.643s] Masking low complexity seeds... [0.142s] Searching alignments... [388.879s] Deallocating memory... [0.003s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.38s] Building query seed array... [2.539s] Computing hash join... [4.958s] Masking low complexity seeds... [0.137s] Searching alignments... [275.689s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.097s] Building query seed array... [2.07s] Computing hash join... [4.896s] Masking low complexity seeds... [0.148s] Searching alignments... [291.124s] Deallocating memory... [0s] Deallocating buffers... [0.951s] Clearing query masking... [1.473s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.234s] Sorting trace points... [3.821s] Computing alignments... [123.472s] Deallocating buffers... [0.07s] Loading trace points... [0.074s] Sorting trace points... [3.747s] Computing alignments... [121.796s] Deallocating buffers... [0.06s] Loading trace points... [0.068s] Sorting trace points... [3.591s] Computing alignments... [125.21s] Deallocating buffers... [0.65s] Loading trace points... [0.743s] Sorting trace points... [4.119s] Computing alignments... [124.427s] Deallocating buffers... [0.289s] Loading trace points... [0.075s] Sorting trace points... [3.042s] Computing alignments... [123.666s] Deallocating buffers... [0.092s] Loading trace points... [0.089s] Sorting trace points... [3.782s] Computing alignments... [123.409s] Deallocating buffers... [0.333s] Loading trace points... [0.055s] Sorting trace points... [3.37s] Computing alignments... [124.178s] Deallocating buffers... [0.081s] Loading trace points... [0.066s] Sorting trace points... [3.194s] Computing alignments... [127.074s] Deallocating buffers... [0.229s] Loading trace points... [0.095s] Sorting trace points... [4.089s] Computing alignments... [122.373s] Deallocating buffers... [0.604s] Loading trace points... [0.041s] Sorting trace points... [3.124s] Computing alignments... [124.205s] Deallocating buffers... [0.215s] Loading trace points... [0.728s] Sorting trace points... [3.389s] Computing alignments... [122.43s] Deallocating buffers... [0.216s] Loading trace points... [0.105s] Sorting trace points... [3.884s] Computing alignments... [122.272s] Deallocating buffers... [0.596s] Loading trace points... [0.048s] Sorting trace points... [4.174s] Computing alignments... [124.473s] Deallocating buffers... [0.433s] Loading trace points... [0.002s] Sorting trace points... [2.847s] Computing alignments... [121.868s] Deallocating buffers... [0.201s] Loading trace points... [0.05s] Sorting trace points... [3.845s] Computing alignments... [119.219s] Deallocating buffers... [0.439s] Loading trace points... [0s] Sorting trace points... [3.475s] Computing alignments... [117.551s] Deallocating buffers... [0.104s] Loading trace points... [0s] [2050.4s] Deallocating reference... [0.075s] Loading reference sequences... [28.992s] Masking reference... [30.892s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.285s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.568s] Building query seed array... [2.26s] Computing hash join... [5.257s] Masking low complexity seeds... [0.145s] Searching alignments... [1058.96s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.879s] Building query seed array... [2.938s] Computing hash join... [5.418s] Masking low complexity seeds... [0.154s] Searching alignments... [445.201s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.574s] Building query seed array... [2.705s] Computing hash join... [5.556s] Masking low complexity seeds... [0.163s] Searching alignments... [321.457s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.169s] Building query seed array... [2.365s] Computing hash join... [5.333s] Masking low complexity seeds... [0.152s] Searching alignments... [327.184s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.759s] Building query seed array... [2.028s] Computing hash join... [5.311s] Masking low complexity seeds... [0.151s] Searching alignments... [510.447s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.917s] Building query seed array... [2.32s] Computing hash join... [5.384s] Masking low complexity seeds... [0.14s] Searching alignments... [395.651s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.76s] Building query seed array... [2.578s] Computing hash join... [5.118s] Masking low complexity seeds... [0.141s] Searching alignments... [276.371s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.611s] Building query seed array... [2.183s] Computing hash join... [5.107s] Masking low complexity seeds... [0.156s] Searching alignments... [282.149s] Deallocating memory... [0s] Deallocating buffers... [0.866s] Clearing query masking... [1.402s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.512s] Sorting trace points... [3.86s] Computing alignments... [117.046s] Deallocating buffers... [0.271s] Loading trace points... [0.057s] Sorting trace points... [4.169s] Computing alignments... [114.526s] Deallocating buffers... [0.722s] Loading trace points... [0.073s] Sorting trace points... [3.766s] Computing alignments... [116.966s] Deallocating buffers... [0.109s] Loading trace points... [0.075s] Sorting trace points... [3.297s] Computing alignments... [117.107s] Deallocating buffers... [0.458s] Loading trace points... [0.051s] Sorting trace points... [3.153s] Computing alignments... [114.741s] Deallocating buffers... [0.245s] Loading trace points... [0.051s] Sorting trace points... [4.172s] Computing alignments... [115.725s] Deallocating buffers... [0.575s] Loading trace points... [0.064s] Sorting trace points... [2.894s] Computing alignments... [117.326s] Deallocating buffers... [0.184s] Loading trace points... [0s] Sorting trace points... [3.722s] Computing alignments... [117.64s] Deallocating buffers... [0.441s] Loading trace points... [0.068s] Sorting trace points... [3.401s] Computing alignments... [113.922s] Deallocating buffers... [0.32s] Loading trace points... [0.08s] Sorting trace points... [3.251s] Computing alignments... [116.085s] Deallocating buffers... [0.351s] Loading trace points... [0.076s] Sorting trace points... [3.662s] Computing alignments... [113.808s] Deallocating buffers... [0.297s] Loading trace points... [0.068s] Sorting trace points... [3.324s] Computing alignments... [113.878s] Deallocating buffers... [0.304s] Loading trace points... [0.078s] Sorting trace points... [3.95s] Computing alignments... [117.8s] Deallocating buffers... [0.495s] Loading trace points... [0.084s] Sorting trace points... [3.839s] Computing alignments... [114.428s] Deallocating buffers... [0.083s] Loading trace points... [0.081s] Sorting trace points... [4.045s] Computing alignments... [111.844s] Deallocating buffers... [0.749s] Loading trace points... [0s] Sorting trace points... [3.783s] Computing alignments... [110.762s] Deallocating buffers... [0.379s] Loading trace points... [0s] [1927.54s] Deallocating reference... [0.062s] Loading reference sequences... [31.106s] Masking reference... [30.849s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.13s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.806s] Building query seed array... [2.235s] Computing hash join... [5.785s] Masking low complexity seeds... [0.162s] Searching alignments... [1074.37s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.009s] Building query seed array... [2.756s] Computing hash join... [5.446s] Masking low complexity seeds... [0.168s] Searching alignments... [445.482s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.427s] Building query seed array... [2.695s] Computing hash join... [5.483s] Masking low complexity seeds... [0.153s] Searching alignments... [325.119s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.608s] Building query seed array... [2.284s] Computing hash join... [4.921s] Masking low complexity seeds... [0.146s] Searching alignments... [329.033s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.491s] Building query seed array... [2.157s] Computing hash join... [5.04s] Masking low complexity seeds... [0.138s] Searching alignments... [506.065s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.586s] Building query seed array... [2.391s] Computing hash join... [5.232s] Masking low complexity seeds... [0.143s] Searching alignments... [394.739s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.486s] Building query seed array... [2.458s] Computing hash join... [4.744s] Masking low complexity seeds... [0.144s] Searching alignments... [275.847s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.452s] Building query seed array... [2.141s] Computing hash join... [5.116s] Masking low complexity seeds... [0.156s] Searching alignments... [290.131s] Deallocating memory... [0s] Deallocating buffers... [1.365s] Clearing query masking... [1.47s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [18.927s] Sorting trace points... [3.713s] Computing alignments... [116.913s] Deallocating buffers... [0.416s] Loading trace points... [0.096s] Sorting trace points... [3.554s] Computing alignments... [114.929s] Deallocating buffers... [0.518s] Loading trace points... [0.065s] Sorting trace points... [2.63s] Computing alignments... [119.162s] Deallocating buffers... [0.087s] Loading trace points... [0.049s] Sorting trace points... [3.18s] Computing alignments... [117.001s] Deallocating buffers... [0.216s] Loading trace points... [0.063s] Sorting trace points... [3.763s] Computing alignments... [116.756s] Deallocating buffers... [0.357s] Loading trace points... [0.003s] Sorting trace points... [3.112s] Computing alignments... [116.331s] Deallocating buffers... [0.301s] Loading trace points... [0.048s] Sorting trace points... [3.113s] Computing alignments... [117.917s] Deallocating buffers... [0.212s] Loading trace points... [0.059s] Sorting trace points... [2.653s] Computing alignments... [117.873s] Deallocating buffers... [0.087s] Loading trace points... [0.072s] Sorting trace points... [3.176s] Computing alignments... [115.381s] Deallocating buffers... [0.273s] Loading trace points... [0.056s] Sorting trace points... [3.158s] Computing alignments... [117.04s] Deallocating buffers... [0.193s] Loading trace points... [0.055s] Sorting trace points... [2.826s] Computing alignments... [115.41s] Deallocating buffers... [0.136s] Loading trace points... [0s] Sorting trace points... [4.018s] Computing alignments... [115.151s] Deallocating buffers... [0.542s] Loading trace points... [0.058s] Sorting trace points... [3.653s] Computing alignments... [118.17s] Deallocating buffers... [0.325s] Loading trace points... [0.073s] Sorting trace points... [3.627s] Computing alignments... [115.879s] Deallocating buffers... [0.287s] Loading trace points... [0.045s] Sorting trace points... [3.824s] Computing alignments... [112.874s] Deallocating buffers... [0.594s] Loading trace points... [0s] Sorting trace points... [3.523s] Computing alignments... [113.336s] Deallocating buffers... [0.231s] Loading trace points... [0s] [1938.15s] Deallocating reference... [0.063s] Loading reference sequences... [29.145s] Masking reference... [30.862s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.622s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.646s] Building query seed array... [2.251s] Computing hash join... [5.553s] Masking low complexity seeds... [0.157s] Searching alignments... [1060.5s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.569s] Building query seed array... [2.9s] Computing hash join... [5.553s] Masking low complexity seeds... [0.159s] Searching alignments... [445.231s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.318s] Building query seed array... [2.653s] Computing hash join... [5.892s] Masking low complexity seeds... [0.192s] Searching alignments... [318.679s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.098s] Building query seed array... [2.444s] Computing hash join... [5.416s] Masking low complexity seeds... [0.196s] Searching alignments... [325.385s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.182s] Building query seed array... [2s] Computing hash join... [5.256s] Masking low complexity seeds... [0.154s] Searching alignments... [497.784s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.288s] Building query seed array... [2.294s] Computing hash join... [5.224s] Masking low complexity seeds... [0.143s] Searching alignments... [386.757s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.553s] Building query seed array... [2.585s] Computing hash join... [5.204s] Masking low complexity seeds... [0.142s] Searching alignments... [273.28s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.576s] Building query seed array... [2.096s] Computing hash join... [5.317s] Masking low complexity seeds... [0.143s] Searching alignments... [283.404s] Deallocating memory... [0s] Deallocating buffers... [0.858s] Clearing query masking... [1.565s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.495s] Sorting trace points... [3.293s] Computing alignments... [105.679s] Deallocating buffers... [0.152s] Loading trace points... [0.067s] Sorting trace points... [4.135s] Computing alignments... [104.987s] Deallocating buffers... [0.187s] Loading trace points... [0.065s] Sorting trace points... [4.231s] Computing alignments... [106.795s] Deallocating buffers... [0.762s] Loading trace points... [0.063s] Sorting trace points... [3.407s] Computing alignments... [107.174s] Deallocating buffers... [0.121s] Loading trace points... [0.071s] Sorting trace points... [3.465s] Computing alignments... [106.084s] Deallocating buffers... [0.498s] Loading trace points... [0.072s] Sorting trace points... [2.876s] Computing alignments... [105.703s] Deallocating buffers... [0.049s] Loading trace points... [0.084s] Sorting trace points... [3.268s] Computing alignments... [107.604s] Deallocating buffers... [0.279s] Loading trace points... [0.051s] Sorting trace points... [3.856s] Computing alignments... [108.515s] Deallocating buffers... [0.47s] Loading trace points... [0.082s] Sorting trace points... [4.077s] Computing alignments... [104.322s] Deallocating buffers... [0.3s] Loading trace points... [0.043s] Sorting trace points... [3.167s] Computing alignments... [106.299s] Deallocating buffers... [0.08s] Loading trace points... [0.081s] Sorting trace points... [4.298s] Computing alignments... [105.036s] Deallocating buffers... [0.317s] Loading trace points... [0.067s] Sorting trace points... [3.219s] Computing alignments... [104.915s] Deallocating buffers... [0.078s] Loading trace points... [0.002s] Sorting trace points... [3.486s] Computing alignments... [107.617s] Deallocating buffers... [0.184s] Loading trace points... [0.089s] Sorting trace points... [3.892s] Computing alignments... [105.737s] Deallocating buffers... [0.455s] Loading trace points... [0.08s] Sorting trace points... [3.79s] Computing alignments... [103.89s] Deallocating buffers... [0.355s] Loading trace points... [0s] Sorting trace points... [3.014s] Computing alignments... [102.529s] Deallocating buffers... [0.076s] Loading trace points... [0s] [1774.3s] Deallocating reference... [0.065s] Loading reference sequences... [29.169s] Masking reference... [32.087s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.124s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.103s] Building query seed array... [2.117s] Computing hash join... [5.501s] Masking low complexity seeds... [0.162s] Searching alignments... [1074.29s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.076s] Building query seed array... [2.585s] Computing hash join... [5.632s] Masking low complexity seeds... [0.165s] Searching alignments... [450.548s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.343s] Building query seed array... [2.588s] Computing hash join... [5.835s] Masking low complexity seeds... [0.166s] Searching alignments... [325.268s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.947s] Building query seed array... [2.146s] Computing hash join... [5.798s] Masking low complexity seeds... [0.164s] Searching alignments... [330.809s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.214s] Building query seed array... [1.937s] Computing hash join... [5.467s] Masking low complexity seeds... [0.147s] Searching alignments... [507.714s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.2s] Building query seed array... [2.257s] Computing hash join... [5.553s] Masking low complexity seeds... [0.145s] Searching alignments... [385.158s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.426s] Building query seed array... [2.476s] Computing hash join... [5.657s] Masking low complexity seeds... [0.153s] Searching alignments... [278.037s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.066s] Building query seed array... [2.065s] Computing hash join... [5.544s] Masking low complexity seeds... [0.156s] Searching alignments... [281.821s] Deallocating memory... [0s] Deallocating buffers... [0.396s] Clearing query masking... [1.57s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.824s] Sorting trace points... [3.014s] Computing alignments... [128.855s] Deallocating buffers... [0.122s] Loading trace points... [0.079s] Sorting trace points... [4.468s] Computing alignments... [126.644s] Deallocating buffers... [0.887s] Loading trace points... [0.08s] Sorting trace points... [2.96s] Computing alignments... [130.42s] Deallocating buffers... [0.106s] Loading trace points... [0.083s] Sorting trace points... [3.696s] Computing alignments... [129.84s] Deallocating buffers... [0.18s] Loading trace points... [0.044s] Sorting trace points... [3.32s] Computing alignments... [128.914s] Deallocating buffers... [0.464s] Loading trace points... [0.095s] Sorting trace points... [3.074s] Computing alignments... [128.464s] Deallocating buffers... [0.114s] Loading trace points... [0.073s] Sorting trace points... [3.526s] Computing alignments... [130.156s] Deallocating buffers... [0.503s] Loading trace points... [0.103s] Sorting trace points... [3.936s] Computing alignments... [131.049s] Deallocating buffers... [0.248s] Loading trace points... [0.053s] Sorting trace points... [3.939s] Computing alignments... [125.603s] Deallocating buffers... [0.44s] Loading trace points... [0.086s] Sorting trace points... [2.66s] Computing alignments... [130.77s] Deallocating buffers... [0.123s] Loading trace points... [0.077s] Sorting trace points... [3.101s] Computing alignments... [127.956s] Deallocating buffers... [0.164s] Loading trace points... [0.064s] Sorting trace points... [3.615s] Computing alignments... [127.498s] Deallocating buffers... [0.307s] Loading trace points... [0.089s] Sorting trace points... [3.114s] Computing alignments... [130.991s] Deallocating buffers... [0.397s] Loading trace points... [0.063s] Sorting trace points... [2.829s] Computing alignments... [128.246s] Deallocating buffers... [0.107s] Loading trace points... [0.056s] Sorting trace points... [3.857s] Computing alignments... [124.094s] Deallocating buffers... [0.475s] Loading trace points... [0s] Sorting trace points... [3.987s] Computing alignments... [122.943s] Deallocating buffers... [0.451s] Loading trace points... [0s] [2132.65s] Deallocating reference... [0.069s] Loading reference sequences... [250.273s] Masking reference... [31.186s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.947s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.424s] Building query seed array... [2.144s] Computing hash join... [5.778s] Masking low complexity seeds... [0.159s] Searching alignments... [1062.79s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.552s] Building query seed array... [2.707s] Computing hash join... [5.802s] Masking low complexity seeds... [0.15s] Searching alignments... [446.07s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.612s] Building query seed array... [2.834s] Computing hash join... [5.729s] Masking low complexity seeds... [0.158s] Searching alignments... [326.287s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.318s] Building query seed array... [2.284s] Computing hash join... [4.926s] Masking low complexity seeds... [0.164s] Searching alignments... [328.433s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.316s] Building query seed array... [2.018s] Computing hash join... [4.892s] Masking low complexity seeds... [0.161s] Searching alignments... [495.459s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.579s] Building query seed array... [2.372s] Computing hash join... [4.742s] Masking low complexity seeds... [0.129s] Searching alignments... [389.74s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.586s] Building query seed array... [2.571s] Computing hash join... [4.653s] Masking low complexity seeds... [0.152s] Searching alignments... [276.217s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.606s] Building query seed array... [2.058s] Computing hash join... [5.544s] Masking low complexity seeds... [0.15s] Searching alignments... [286.322s] Deallocating memory... [0s] Deallocating buffers... [1.412s] Clearing query masking... [1.446s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.863s] Sorting trace points... [3.75s] Computing alignments... [126.08s] Deallocating buffers... [0.316s] Loading trace points... [0.092s] Sorting trace points... [4.158s] Computing alignments... [122.224s] Deallocating buffers... [0.397s] Loading trace points... [0.802s] Sorting trace points... [3.834s] Computing alignments... [128.144s] Deallocating buffers... [0.178s] Loading trace points... [0.082s] Sorting trace points... [3.753s] Computing alignments... [126.866s] Deallocating buffers... [0.366s] Loading trace points... [0.084s] Sorting trace points... [3.743s] Computing alignments... [126.439s] Deallocating buffers... [0.475s] Loading trace points... [0.052s] Sorting trace points... [3.778s] Computing alignments... [125.231s] Deallocating buffers... [0.394s] Loading trace points... [0.047s] Sorting trace points... [2.776s] Computing alignments... [127.471s] Deallocating buffers... [0.127s] Loading trace points... [0.063s] Sorting trace points... [3.451s] Computing alignments... [127.648s] Deallocating buffers... [0.262s] Loading trace points... [0.08s] Sorting trace points... [3.037s] Computing alignments... [122.91s] Deallocating buffers... [0.254s] Loading trace points... [0.045s] Sorting trace points... [3.673s] Computing alignments... [126.075s] Deallocating buffers... [0.506s] Loading trace points... [0.05s] Sorting trace points... [3.353s] Computing alignments... [123.547s] Deallocating buffers... [0.327s] Loading trace points... [0.002s] Sorting trace points... [2.8s] Computing alignments... [124.421s] Deallocating buffers... [0.123s] Loading trace points... [0.077s] Sorting trace points... [3.346s] Computing alignments... [125.931s] Deallocating buffers... [0.41s] Loading trace points... [0.055s] Sorting trace points... [3.652s] Computing alignments... [124.972s] Deallocating buffers... [0.249s] Loading trace points... [0.058s] Sorting trace points... [4.048s] Computing alignments... [120.805s] Deallocating buffers... [0.606s] Loading trace points... [0s] Sorting trace points... [3.625s] Computing alignments... [120.673s] Deallocating buffers... [0.276s] Loading trace points... [0s] [2082.06s] Deallocating reference... [0.071s] Loading reference sequences... [30.074s] Masking reference... [32.148s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.188s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.523s] Building query seed array... [2.204s] Computing hash join... [5.579s] Masking low complexity seeds... [0.158s] Searching alignments... [1074.27s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.081s] Building query seed array... [2.961s] Computing hash join... [5.528s] Masking low complexity seeds... [0.159s] Searching alignments... [443.699s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.319s] Building query seed array... [2.75s] Computing hash join... [5.097s] Masking low complexity seeds... [0.146s] Searching alignments... [325.185s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.416s] Building query seed array... [2.22s] Computing hash join... [5.462s] Masking low complexity seeds... [0.15s] Searching alignments... [326.465s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.268s] Building query seed array... [2.186s] Computing hash join... [5.236s] Masking low complexity seeds... [0.155s] Searching alignments... [498.943s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.065s] Building query seed array... [2.356s] Computing hash join... [5.228s] Masking low complexity seeds... [0.145s] Searching alignments... [391.581s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.26s] Building query seed array... [2.613s] Computing hash join... [5.197s] Masking low complexity seeds... [0.136s] Searching alignments... [277.48s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.781s] Building query seed array... [2.072s] Computing hash join... [5.151s] Masking low complexity seeds... [0.157s] Searching alignments... [286.072s] Deallocating memory... [0s] Deallocating buffers... [0.713s] Clearing query masking... [1.47s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [18.646s] Sorting trace points... [3.812s] Computing alignments... [117.181s] Deallocating buffers... [0.264s] Loading trace points... [0.148s] Sorting trace points... [4.243s] Computing alignments... [116.395s] Deallocating buffers... [0.41s] Loading trace points... [0.113s] Sorting trace points... [3.698s] Computing alignments... [118.655s] Deallocating buffers... [0.138s] Loading trace points... [0.057s] Sorting trace points... [2.884s] Computing alignments... [118.071s] Deallocating buffers... [0.249s] Loading trace points... [0.063s] Sorting trace points... [3.68s] Computing alignments... [117.446s] Deallocating buffers... [0.436s] Loading trace points... [0.051s] Sorting trace points... [3.834s] Computing alignments... [116.448s] Deallocating buffers... [0.406s] Loading trace points... [0.046s] Sorting trace points... [3.705s] Computing alignments... [117.809s] Deallocating buffers... [0.453s] Loading trace points... [0.07s] Sorting trace points... [4.143s] Computing alignments... [119.457s] Deallocating buffers... [0.388s] Loading trace points... [0.144s] Sorting trace points... [2.664s] Computing alignments... [115.222s] Deallocating buffers... [0.079s] Loading trace points... [0.077s] Sorting trace points... [3.497s] Computing alignments... [117.872s] Deallocating buffers... [0.463s] Loading trace points... [0.056s] Sorting trace points... [4.042s] Computing alignments... [114.823s] Deallocating buffers... [0.33s] Loading trace points... [0.003s] Sorting trace points... [3.963s] Computing alignments... [116.73s] Deallocating buffers... [0.555s] Loading trace points... [0.056s] Sorting trace points... [4.18s] Computing alignments... [118.696s] Deallocating buffers... [0.323s] Loading trace points... [0.052s] Sorting trace points... [4.216s] Computing alignments... [116.657s] Deallocating buffers... [0.687s] Loading trace points... [0.05s] Sorting trace points... [3.744s] Computing alignments... [114.121s] Deallocating buffers... [0.35s] Loading trace points... [0s] Sorting trace points... [2.84s] Computing alignments... [112.391s] Deallocating buffers... [0.248s] Loading trace points... [0s] [1952.68s] Deallocating reference... [0.07s] Loading reference sequences... [24.806s] Masking reference... [26.018s] Initializing dictionary... [0.064s] Initializing temporary storage... [0.007s] Building reference histograms... [25.974s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.343s] Building query seed array... [2.059s] Computing hash join... [4.396s] Masking low complexity seeds... [0.144s] Searching alignments... [852.888s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.542s] Building query seed array... [2.381s] Computing hash join... [4.542s] Masking low complexity seeds... [0.143s] Searching alignments... [363.542s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.866s] Building query seed array... [2.455s] Computing hash join... [4.375s] Masking low complexity seeds... [0.142s] Searching alignments... [263.562s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [7.888s] Building query seed array... [2.086s] Computing hash join... [3.978s] Masking low complexity seeds... [0.148s] Searching alignments... [264.826s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.053s] Building query seed array... [1.889s] Computing hash join... [4.25s] Masking low complexity seeds... [0.136s] Searching alignments... [399.604s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.484s] Building query seed array... [2.197s] Computing hash join... [3.892s] Masking low complexity seeds... [0.135s] Searching alignments... [308.925s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.809s] Building query seed array... [2.298s] Computing hash join... [3.891s] Masking low complexity seeds... [0.132s] Searching alignments... [222.24s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.092s] Building query seed array... [1.899s] Computing hash join... [3.831s] Masking low complexity seeds... [0.13s] Searching alignments... [229.278s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [1.505s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.848s] Sorting trace points... [2.925s] Computing alignments... [90.8s] Deallocating buffers... [0.053s] Loading trace points... [0.097s] Sorting trace points... [2.953s] Computing alignments... [89.061s] Deallocating buffers... [0.059s] Loading trace points... [0.077s] Sorting trace points... [2.167s] Computing alignments... [92.664s] Deallocating buffers... [0.186s] Loading trace points... [0.771s] Sorting trace points... [3.01s] Computing alignments... [91.722s] Deallocating buffers... [0.05s] Loading trace points... [0.037s] Sorting trace points... [3.182s] Computing alignments... [90.438s] Deallocating buffers... [0.424s] Loading trace points... [0.065s] Sorting trace points... [3.048s] Computing alignments... [90.377s] Deallocating buffers... [0.052s] Loading trace points... [0.087s] Sorting trace points... [3.414s] Computing alignments... [92.241s] Deallocating buffers... [0.532s] Loading trace points... [0.081s] Sorting trace points... [2.941s] Computing alignments... [92.339s] Deallocating buffers... [0.06s] Loading trace points... [0.072s] Sorting trace points... [2.504s] Computing alignments... [88.126s] Deallocating buffers... [0.243s] Loading trace points... [0.093s] Sorting trace points... [3.321s] Computing alignments... [90.502s] Deallocating buffers... [0.19s] Loading trace points... [0.716s] Sorting trace points... [2.108s] Computing alignments... [89.711s] Deallocating buffers... [0.056s] Loading trace points... [0.048s] Sorting trace points... [2.95s] Computing alignments... [90.405s] Deallocating buffers... [0.25s] Loading trace points... [0.111s] Sorting trace points... [2.431s] Computing alignments... [91.999s] Deallocating buffers... [0.209s] Loading trace points... [0.086s] Sorting trace points... [2.738s] Computing alignments... [90.207s] Deallocating buffers... [0.106s] Loading trace points... [0.053s] Sorting trace points... [2.185s] Computing alignments... [88.22s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [2.812s] Computing alignments... [87.497s] Deallocating buffers... [0.115s] Loading trace points... [0s] [1511.02s] Deallocating reference... [0.062s] Loading reference sequences... [0.08s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [7010.33s] [7010.33s] Deallocating queries... [0.069s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.809s] [3.566s] Closing the database... [0s] Cleaning up... [0s] Total time = 88544.4s Reported 7814492066 pairwise alignments, 7814492066 HSPs. 6066063 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-21.trimmed.R2.fastq.gz complete: CH05-21.trimmed.R2.blastx.meganized.daa Now MEGANizing CH05-21.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-21.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (272.2s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.9s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11,335.9s) Total reads: 6,066,063 With hits: 6,066,063 Alignments: 5,188,161,846 Assig. Taxonomy: 3,113,916 Assig. SEED: 93,072 Assig. EGGNOG: 13,973 Assig. GTDB: 159,218 Assig. EC: 602,145 Assig. INTERPRO2GO: 1,533,871 MinSupport set to: 3033 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 4,655 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (14.6s) Min-supp. changes: 2,947 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.4s) Binning reads Syncing 100% (0.2s) Class. Taxonomy: 148 Class. SEED: 462 Class. EGGNOG: 1,385 Class. GTDB: 38 Class. EC: 2,205 Class. INTERPRO2GO: 8,404 Total time: 11,639s Peak memory: 40.2 of 195.3G MEGANization of CH05-21.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-29.trimmed.R1.fastq.gz... f8117cb08c56371063cfc12577e63d8a /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-29.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-29.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.355s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.8s] Opening the output file... [0s] Loading query sequences... [112.697s] Masking queries... [28.956s] Algorithm: Double-indexed Building query histograms... [23.014s] Loading reference sequences... [31.35s] Masking reference... [32.017s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.738s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.333s] Building query seed array... [2.821s] Computing hash join... [6.137s] Masking low complexity seeds... [0.263s] Searching alignments... [355.638s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.078s] Building query seed array... [3.154s] Computing hash join... [6.123s] Masking low complexity seeds... [0.261s] Searching alignments... [155.275s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.173s] Building query seed array... [3.349s] Computing hash join... [6.152s] Masking low complexity seeds... [0.263s] Searching alignments... [123.471s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.17s] Building query seed array... [2.684s] Computing hash join... [6.103s] Masking low complexity seeds... [0.259s] Searching alignments... [121.24s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.249s] Building query seed array... [2.458s] Computing hash join... [6.152s] Masking low complexity seeds... [0.249s] Searching alignments... [156.837s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.754s] Building query seed array... [2.824s] Computing hash join... [5.991s] Masking low complexity seeds... [0.248s] Searching alignments... [129.123s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.499s] Building query seed array... [3.078s] Computing hash join... [6.286s] Masking low complexity seeds... [0.253s] Searching alignments... [106.235s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.007s] Building query seed array... [2.479s] Computing hash join... [6.131s] Masking low complexity seeds... [0.245s] Searching alignments... [102.129s] Deallocating memory... [0s] Deallocating buffers... [0.156s] Clearing query masking... [1.883s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.918s] Sorting trace points... [2.046s] Computing alignments... [55.022s] Deallocating buffers... [0.038s] Loading trace points... [0.065s] Sorting trace points... [1.395s] Computing alignments... [56.674s] Deallocating buffers... [0.036s] Loading trace points... [0.079s] Sorting trace points... [2.02s] Computing alignments... [55.801s] Deallocating buffers... [0.023s] Loading trace points... [0.055s] Sorting trace points... [2.019s] Computing alignments... [59.684s] Deallocating buffers... [0.036s] Loading trace points... [0.05s] Sorting trace points... [1.923s] Computing alignments... [55.781s] Deallocating buffers... [0.033s] Loading trace points... [0.057s] Sorting trace points... [1.798s] Computing alignments... [55.906s] Deallocating buffers... [0.03s] Loading trace points... [0.054s] Sorting trace points... [1.842s] Computing alignments... [56.502s] Deallocating buffers... [0.034s] Loading trace points... [0.084s] Sorting trace points... [1.529s] Computing alignments... [58.647s] Deallocating buffers... [0.036s] Loading trace points... [0.045s] Sorting trace points... [1.49s] Computing alignments... [55.354s] Deallocating buffers... [0.027s] Loading trace points... [0.076s] Sorting trace points... [1.993s] Computing alignments... [56.632s] Deallocating buffers... [0.042s] Loading trace points... [0.085s] Sorting trace points... [1.989s] Computing alignments... [56.186s] Deallocating buffers... [0.042s] Loading trace points... [0.058s] Sorting trace points... [2.09s] Computing alignments... [60.715s] Deallocating buffers... [0.036s] Loading trace points... [0.052s] Sorting trace points... [1.722s] Computing alignments... [56.622s] Deallocating buffers... [0.042s] Loading trace points... [0.001s] Sorting trace points... [1.961s] Computing alignments... [56.439s] Deallocating buffers... [0.039s] Loading trace points... [0.054s] Sorting trace points... [1.867s] Computing alignments... [57.53s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.635s] Computing alignments... [56.198s] Deallocating buffers... [0.038s] Loading trace points... [0s] [950.401s] Deallocating reference... [0.076s] Loading reference sequences... [29.256s] Masking reference... [30.94s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.051s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.079s] Building query seed array... [2.885s] Computing hash join... [5.919s] Masking low complexity seeds... [0.26s] Searching alignments... [351.55s] Deallocating memory... [0.02s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.86s] Building query seed array... [3.859s] Computing hash join... [5.933s] Masking low complexity seeds... [0.265s] Searching alignments... [159.464s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.303s] Building query seed array... [3.54s] Computing hash join... [5.926s] Masking low complexity seeds... [0.267s] Searching alignments... [121.021s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.609s] Building query seed array... [3.001s] Computing hash join... [5.674s] Masking low complexity seeds... [0.3s] Searching alignments... [119.108s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.995s] Building query seed array... [2.774s] Computing hash join... [5.828s] Masking low complexity seeds... [0.321s] Searching alignments... [156.038s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.287s] Building query seed array... [3.174s] Computing hash join... [5.234s] Masking low complexity seeds... [0.248s] Searching alignments... [129.618s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.922s] Building query seed array... [3.378s] Computing hash join... [5.592s] Masking low complexity seeds... [0.281s] Searching alignments... [104.851s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.947s] Building query seed array... [2.946s] Computing hash join... [5.475s] Masking low complexity seeds... [0.247s] Searching alignments... [101.471s] Deallocating memory... [0s] Deallocating buffers... [1.044s] Clearing query masking... [1.897s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.249s] Sorting trace points... [1.504s] Computing alignments... [57.258s] Deallocating buffers... [0.077s] Loading trace points... [0.001s] Sorting trace points... [1.815s] Computing alignments... [58.711s] Deallocating buffers... [0.049s] Loading trace points... [0.055s] Sorting trace points... [1.546s] Computing alignments... [58.408s] Deallocating buffers... [0.061s] Loading trace points... [0.068s] Sorting trace points... [1.567s] Computing alignments... [62.776s] Deallocating buffers... [0.069s] Loading trace points... [0.082s] Sorting trace points... [1.42s] Computing alignments... [58.424s] Deallocating buffers... [0.071s] Loading trace points... [0.066s] Sorting trace points... [1.439s] Computing alignments... [58.405s] Deallocating buffers... [0.066s] Loading trace points... [0.042s] Sorting trace points... [1.908s] Computing alignments... [59.044s] Deallocating buffers... [0.048s] Loading trace points... [0.055s] Sorting trace points... [1.792s] Computing alignments... [60.733s] Deallocating buffers... [0.068s] Loading trace points... [0.071s] Sorting trace points... [1.409s] Computing alignments... [57.853s] Deallocating buffers... [0.047s] Loading trace points... [0.061s] Sorting trace points... [1.626s] Computing alignments... [59.008s] Deallocating buffers... [0.066s] Loading trace points... [0.058s] Sorting trace points... [1.965s] Computing alignments... [57.714s] Deallocating buffers... [0.065s] Loading trace points... [0.05s] Sorting trace points... [1.507s] Computing alignments... [64.667s] Deallocating buffers... [0.067s] Loading trace points... [0.073s] Sorting trace points... [1.712s] Computing alignments... [58.849s] Deallocating buffers... [0.069s] Loading trace points... [0.079s] Sorting trace points... [2.007s] Computing alignments... [58.718s] Deallocating buffers... [0.065s] Loading trace points... [0.056s] Sorting trace points... [1.479s] Computing alignments... [59.554s] Deallocating buffers... [0.065s] Loading trace points... [0s] Sorting trace points... [1.479s] Computing alignments... [57.693s] Deallocating buffers... [0.06s] Loading trace points... [0s] [986.18s] Deallocating reference... [0.095s] Loading reference sequences... [28.954s] Masking reference... [30.91s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.597s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.57s] Building query seed array... [2.92s] Computing hash join... [5.81s] Masking low complexity seeds... [0.262s] Searching alignments... [347.131s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.441s] Building query seed array... [3.589s] Computing hash join... [5.642s] Masking low complexity seeds... [0.255s] Searching alignments... [157.082s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.51s] Building query seed array... [3.645s] Computing hash join... [5.473s] Masking low complexity seeds... [0.258s] Searching alignments... [122.036s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.44s] Building query seed array... [3.079s] Computing hash join... [5.411s] Masking low complexity seeds... [0.248s] Searching alignments... [120.362s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.008s] Building query seed array... [2.744s] Computing hash join... [5.511s] Masking low complexity seeds... [0.269s] Searching alignments... [160.652s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.262s] Building query seed array... [3.122s] Computing hash join... [5.539s] Masking low complexity seeds... [0.26s] Searching alignments... [128.514s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.198s] Building query seed array... [3.314s] Computing hash join... [5.782s] Masking low complexity seeds... [0.278s] Searching alignments... [104.67s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.024s] Building query seed array... [2.8s] Computing hash join... [5.492s] Masking low complexity seeds... [0.257s] Searching alignments... [101.183s] Deallocating memory... [0s] Deallocating buffers... [0.789s] Clearing query masking... [1.679s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.708s] Sorting trace points... [1.988s] Computing alignments... [57.163s] Deallocating buffers... [0.052s] Loading trace points... [0.061s] Sorting trace points... [1.63s] Computing alignments... [58.523s] Deallocating buffers... [0.187s] Loading trace points... [0.057s] Sorting trace points... [2.045s] Computing alignments... [58.118s] Deallocating buffers... [0.061s] Loading trace points... [0.001s] Sorting trace points... [2.025s] Computing alignments... [62.615s] Deallocating buffers... [0.103s] Loading trace points... [0.081s] Sorting trace points... [1.873s] Computing alignments... [57.618s] Deallocating buffers... [0.127s] Loading trace points... [0.095s] Sorting trace points... [1.724s] Computing alignments... [57.71s] Deallocating buffers... [0.059s] Loading trace points... [0.07s] Sorting trace points... [1.932s] Computing alignments... [57.975s] Deallocating buffers... [0.056s] Loading trace points... [0.062s] Sorting trace points... [1.515s] Computing alignments... [60.469s] Deallocating buffers... [0.067s] Loading trace points... [0.057s] Sorting trace points... [1.941s] Computing alignments... [57.855s] Deallocating buffers... [0.043s] Loading trace points... [0.072s] Sorting trace points... [1.377s] Computing alignments... [58.362s] Deallocating buffers... [0.057s] Loading trace points... [0.127s] Sorting trace points... [1.925s] Computing alignments... [56.969s] Deallocating buffers... [0.048s] Loading trace points... [0.055s] Sorting trace points... [2.086s] Computing alignments... [64.129s] Deallocating buffers... [0.067s] Loading trace points... [0.047s] Sorting trace points... [1.898s] Computing alignments... [58.865s] Deallocating buffers... [0.067s] Loading trace points... [0.038s] Sorting trace points... [1.559s] Computing alignments... [57.961s] Deallocating buffers... [0.047s] Loading trace points... [0.049s] Sorting trace points... [1.433s] Computing alignments... [59.311s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [1.959s] Computing alignments... [57.426s] Deallocating buffers... [0.053s] Loading trace points... [0s] [981.831s] Deallocating reference... [0.066s] Loading reference sequences... [42.685s] Masking reference... [30.902s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.998s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.447s] Building query seed array... [2.917s] Computing hash join... [5.988s] Masking low complexity seeds... [0.263s] Searching alignments... [353.58s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.894s] Building query seed array... [4.028s] Computing hash join... [5.987s] Masking low complexity seeds... [0.275s] Searching alignments... [161.635s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.315s] Building query seed array... [3.536s] Computing hash join... [5.946s] Masking low complexity seeds... [0.26s] Searching alignments... [121.905s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.169s] Building query seed array... [3.115s] Computing hash join... [5.94s] Masking low complexity seeds... [0.283s] Searching alignments... [122.152s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.484s] Building query seed array... [2.777s] Computing hash join... [5.672s] Masking low complexity seeds... [0.244s] Searching alignments... [156.783s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.263s] Building query seed array... [3.21s] Computing hash join... [5.703s] Masking low complexity seeds... [0.272s] Searching alignments... [130.536s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.43s] Building query seed array... [3.476s] Computing hash join... [5.907s] Masking low complexity seeds... [0.282s] Searching alignments... [103.898s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.468s] Building query seed array... [2.88s] Computing hash join... [5.533s] Masking low complexity seeds... [0.252s] Searching alignments... [101.168s] Deallocating memory... [0s] Deallocating buffers... [1.354s] Clearing query masking... [1.742s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.949s] Sorting trace points... [1.961s] Computing alignments... [55.789s] Deallocating buffers... [0.047s] Loading trace points... [0.062s] Sorting trace points... [1.803s] Computing alignments... [57.407s] Deallocating buffers... [0.139s] Loading trace points... [0.065s] Sorting trace points... [2.058s] Computing alignments... [57.243s] Deallocating buffers... [0.041s] Loading trace points... [0.068s] Sorting trace points... [1.799s] Computing alignments... [60.455s] Deallocating buffers... [0.036s] Loading trace points... [0.054s] Sorting trace points... [1.367s] Computing alignments... [56.839s] Deallocating buffers... [0.035s] Loading trace points... [0.05s] Sorting trace points... [1.618s] Computing alignments... [56.871s] Deallocating buffers... [0.044s] Loading trace points... [0.08s] Sorting trace points... [1.47s] Computing alignments... [56.883s] Deallocating buffers... [0.05s] Loading trace points... [0.103s] Sorting trace points... [1.519s] Computing alignments... [59.227s] Deallocating buffers... [0.038s] Loading trace points... [0.069s] Sorting trace points... [1.805s] Computing alignments... [56.491s] Deallocating buffers... [0.027s] Loading trace points... [0.039s] Sorting trace points... [1.827s] Computing alignments... [57.853s] Deallocating buffers... [0.042s] Loading trace points... [0.134s] Sorting trace points... [1.913s] Computing alignments... [56.491s] Deallocating buffers... [0.051s] Loading trace points... [0.08s] Sorting trace points... [2.031s] Computing alignments... [63.065s] Deallocating buffers... [0.175s] Loading trace points... [0.069s] Sorting trace points... [1.87s] Computing alignments... [57.586s] Deallocating buffers... [0.043s] Loading trace points... [0.067s] Sorting trace points... [1.923s] Computing alignments... [57.249s] Deallocating buffers... [0.045s] Loading trace points... [0.049s] Sorting trace points... [2.027s] Computing alignments... [58.078s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [1.586s] Computing alignments... [56.37s] Deallocating buffers... [0.045s] Loading trace points... [0s] [964.507s] Deallocating reference... [0.083s] Loading reference sequences... [252.205s] Masking reference... [31.486s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.239s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.386s] Building query seed array... [2.881s] Computing hash join... [6.025s] Masking low complexity seeds... [0.267s] Searching alignments... [348.783s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.75s] Building query seed array... [3.633s] Computing hash join... [5.408s] Masking low complexity seeds... [0.284s] Searching alignments... [156.454s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.035s] Building query seed array... [3.859s] Computing hash join... [5.641s] Masking low complexity seeds... [0.261s] Searching alignments... [122.473s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.148s] Building query seed array... [2.913s] Computing hash join... [6.114s] Masking low complexity seeds... [0.279s] Searching alignments... [120.151s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.615s] Building query seed array... [2.695s] Computing hash join... [5.894s] Masking low complexity seeds... [0.255s] Searching alignments... [158.074s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.895s] Building query seed array... [3.212s] Computing hash join... [5.348s] Masking low complexity seeds... [0.274s] Searching alignments... [129.092s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.62s] Building query seed array... [3.354s] Computing hash join... [6.124s] Masking low complexity seeds... [0.263s] Searching alignments... [104.174s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.781s] Building query seed array... [2.843s] Computing hash join... [5.64s] Masking low complexity seeds... [0.246s] Searching alignments... [100.655s] Deallocating memory... [0s] Deallocating buffers... [1.256s] Clearing query masking... [1.801s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.25s] Sorting trace points... [1.891s] Computing alignments... [58.362s] Deallocating buffers... [0.064s] Loading trace points... [0.075s] Sorting trace points... [1.618s] Computing alignments... [60.75s] Deallocating buffers... [0.068s] Loading trace points... [0.05s] Sorting trace points... [1.438s] Computing alignments... [59.698s] Deallocating buffers... [0.06s] Loading trace points... [0.086s] Sorting trace points... [2.024s] Computing alignments... [64.174s] Deallocating buffers... [0.053s] Loading trace points... [0.057s] Sorting trace points... [1.806s] Computing alignments... [59.321s] Deallocating buffers... [0.048s] Loading trace points... [0.038s] Sorting trace points... [1.93s] Computing alignments... [59.225s] Deallocating buffers... [0.06s] Loading trace points... [0.062s] Sorting trace points... [1.999s] Computing alignments... [59.975s] Deallocating buffers... [0.064s] Loading trace points... [0.061s] Sorting trace points... [1.727s] Computing alignments... [62.301s] Deallocating buffers... [0.039s] Loading trace points... [0.041s] Sorting trace points... [1.48s] Computing alignments... [59.447s] Deallocating buffers... [0.058s] Loading trace points... [0.048s] Sorting trace points... [1.513s] Computing alignments... [60.447s] Deallocating buffers... [0.059s] Loading trace points... [0.076s] Sorting trace points... [1.686s] Computing alignments... [59.038s] Deallocating buffers... [0.059s] Loading trace points... [0.043s] Sorting trace points... [1.719s] Computing alignments... [66.33s] Deallocating buffers... [0.066s] Loading trace points... [0.066s] Sorting trace points... [1.919s] Computing alignments... [60.686s] Deallocating buffers... [0.054s] Loading trace points... [0.076s] Sorting trace points... [1.908s] Computing alignments... [59.559s] Deallocating buffers... [0.052s] Loading trace points... [0.036s] Sorting trace points... [1.866s] Computing alignments... [61.436s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [1.437s] Computing alignments... [59.809s] Deallocating buffers... [0.069s] Loading trace points... [0s] [1010.68s] Deallocating reference... [0.084s] Loading reference sequences... [253.531s] Masking reference... [30.95s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.525s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.163s] Building query seed array... [2.838s] Computing hash join... [5.932s] Masking low complexity seeds... [0.27s] Searching alignments... [349.123s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.733s] Building query seed array... [3.905s] Computing hash join... [5.714s] Masking low complexity seeds... [0.294s] Searching alignments... [157.935s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.187s] Building query seed array... [3.638s] Computing hash join... [5.905s] Masking low complexity seeds... [0.259s] Searching alignments... [120.556s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.276s] Building query seed array... [3.082s] Computing hash join... [5.804s] Masking low complexity seeds... [0.296s] Searching alignments... [121.87s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.171s] Building query seed array... [2.721s] Computing hash join... [5.514s] Masking low complexity seeds... [0.237s] Searching alignments... [155.935s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.348s] Building query seed array... [3.132s] Computing hash join... [5.578s] Masking low complexity seeds... [0.253s] Searching alignments... [129.744s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.129s] Building query seed array... [3.287s] Computing hash join... [5.696s] Masking low complexity seeds... [0.309s] Searching alignments... [101.78s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.329s] Building query seed array... [2.809s] Computing hash join... [5.642s] Masking low complexity seeds... [0.32s] Searching alignments... [101.515s] Deallocating memory... [0s] Deallocating buffers... [0.957s] Clearing query masking... [1.676s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.774s] Sorting trace points... [1.967s] Computing alignments... [56.372s] Deallocating buffers... [0.033s] Loading trace points... [0.059s] Sorting trace points... [1.391s] Computing alignments... [57.766s] Deallocating buffers... [0.043s] Loading trace points... [0.08s] Sorting trace points... [1.907s] Computing alignments... [57.083s] Deallocating buffers... [0.034s] Loading trace points... [0.039s] Sorting trace points... [1.874s] Computing alignments... [61.283s] Deallocating buffers... [0.039s] Loading trace points... [0.084s] Sorting trace points... [1.491s] Computing alignments... [57.196s] Deallocating buffers... [0.034s] Loading trace points... [0.041s] Sorting trace points... [1.414s] Computing alignments... [57.113s] Deallocating buffers... [0.038s] Loading trace points... [0.083s] Sorting trace points... [1.847s] Computing alignments... [57.647s] Deallocating buffers... [0.034s] Loading trace points... [0.079s] Sorting trace points... [1.83s] Computing alignments... [59.27s] Deallocating buffers... [0.028s] Loading trace points... [0.07s] Sorting trace points... [1.485s] Computing alignments... [56.922s] Deallocating buffers... [0.055s] Loading trace points... [0.097s] Sorting trace points... [1.497s] Computing alignments... [58.146s] Deallocating buffers... [0.04s] Loading trace points... [0.002s] Sorting trace points... [1.956s] Computing alignments... [57.07s] Deallocating buffers... [0.041s] Loading trace points... [0.061s] Sorting trace points... [1.957s] Computing alignments... [62.496s] Deallocating buffers... [0.036s] Loading trace points... [0.073s] Sorting trace points... [1.881s] Computing alignments... [57.893s] Deallocating buffers... [0.047s] Loading trace points... [0.062s] Sorting trace points... [1.415s] Computing alignments... [57.245s] Deallocating buffers... [0.036s] Loading trace points... [0.048s] Sorting trace points... [1.359s] Computing alignments... [58.488s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.458s] Computing alignments... [57.677s] Deallocating buffers... [0.047s] Loading trace points... [0s] [967.775s] Deallocating reference... [0.085s] Loading reference sequences... [29.061s] Masking reference... [30.908s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.28s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.953s] Building query seed array... [2.834s] Computing hash join... [6.526s] Masking low complexity seeds... [0.264s] Searching alignments... [350.874s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.215s] Building query seed array... [3.971s] Computing hash join... [5.363s] Masking low complexity seeds... [0.293s] Searching alignments... [156.863s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.586s] Building query seed array... [3.612s] Computing hash join... [5.386s] Masking low complexity seeds... [0.268s] Searching alignments... [119.985s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.624s] Building query seed array... [3.118s] Computing hash join... [5.506s] Masking low complexity seeds... [0.25s] Searching alignments... [122.057s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.828s] Building query seed array... [2.834s] Computing hash join... [5.523s] Masking low complexity seeds... [0.254s] Searching alignments... [157.913s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.294s] Building query seed array... [3.277s] Computing hash join... [5.535s] Masking low complexity seeds... [0.284s] Searching alignments... [130.825s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.478s] Building query seed array... [3.244s] Computing hash join... [5.296s] Masking low complexity seeds... [0.244s] Searching alignments... [101.979s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.344s] Building query seed array... [2.813s] Computing hash join... [5.154s] Masking low complexity seeds... [0.244s] Searching alignments... [102.324s] Deallocating memory... [0s] Deallocating buffers... [1.79s] Clearing query masking... [1.75s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.854s] Sorting trace points... [1.944s] Computing alignments... [56.498s] Deallocating buffers... [0.032s] Loading trace points... [0.051s] Sorting trace points... [1.372s] Computing alignments... [58.359s] Deallocating buffers... [0.036s] Loading trace points... [0.074s] Sorting trace points... [1.945s] Computing alignments... [57.856s] Deallocating buffers... [0.034s] Loading trace points... [0.066s] Sorting trace points... [1.932s] Computing alignments... [62.26s] Deallocating buffers... [0.035s] Loading trace points... [0.07s] Sorting trace points... [1.938s] Computing alignments... [57.484s] Deallocating buffers... [0.037s] Loading trace points... [0.081s] Sorting trace points... [1.42s] Computing alignments... [57.609s] Deallocating buffers... [0.035s] Loading trace points... [0.058s] Sorting trace points... [1.632s] Computing alignments... [58.389s] Deallocating buffers... [0.038s] Loading trace points... [0.074s] Sorting trace points... [1.641s] Computing alignments... [60.306s] Deallocating buffers... [0.036s] Loading trace points... [0.095s] Sorting trace points... [1.912s] Computing alignments... [57.937s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.983s] Computing alignments... [58.667s] Deallocating buffers... [0.034s] Loading trace points... [0.068s] Sorting trace points... [1.92s] Computing alignments... [58.02s] Deallocating buffers... [0.164s] Loading trace points... [0.048s] Sorting trace points... [1.817s] Computing alignments... [63.274s] Deallocating buffers... [0.025s] Loading trace points... [0.061s] Sorting trace points... [1.799s] Computing alignments... [58.417s] Deallocating buffers... [0.042s] Loading trace points... [0.076s] Sorting trace points... [1.597s] Computing alignments... [57.966s] Deallocating buffers... [0.037s] Loading trace points... [0.064s] Sorting trace points... [1.877s] Computing alignments... [59.074s] Deallocating buffers... [0.044s] Loading trace points... [0s] Sorting trace points... [1.502s] Computing alignments... [58.34s] Deallocating buffers... [0.03s] Loading trace points... [0s] [980.239s] Deallocating reference... [0.059s] Loading reference sequences... [29.393s] Masking reference... [30.893s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.247s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.114s] Building query seed array... [2.849s] Computing hash join... [5.999s] Masking low complexity seeds... [0.28s] Searching alignments... [349.211s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.755s] Building query seed array... [3.886s] Computing hash join... [5.43s] Masking low complexity seeds... [0.254s] Searching alignments... [155.95s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.947s] Building query seed array... [3.783s] Computing hash join... [5.928s] Masking low complexity seeds... [0.265s] Searching alignments... [119.441s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.225s] Building query seed array... [2.829s] Computing hash join... [5.377s] Masking low complexity seeds... [0.256s] Searching alignments... [119.51s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.572s] Building query seed array... [2.764s] Computing hash join... [5.434s] Masking low complexity seeds... [0.278s] Searching alignments... [158.814s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.408s] Building query seed array... [3.428s] Computing hash join... [5.363s] Masking low complexity seeds... [0.241s] Searching alignments... [127.615s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.946s] Building query seed array... [3.391s] Computing hash join... [5.327s] Masking low complexity seeds... [0.244s] Searching alignments... [101.756s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.016s] Building query seed array... [2.709s] Computing hash join... [5.262s] Masking low complexity seeds... [0.269s] Searching alignments... [101.396s] Deallocating memory... [0s] Deallocating buffers... [1.575s] Clearing query masking... [1.702s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.867s] Sorting trace points... [1.894s] Computing alignments... [54.414s] Deallocating buffers... [0.033s] Loading trace points... [0.091s] Sorting trace points... [1.952s] Computing alignments... [56.16s] Deallocating buffers... [0.033s] Loading trace points... [0.042s] Sorting trace points... [1.955s] Computing alignments... [55.431s] Deallocating buffers... [0.023s] Loading trace points... [0.079s] Sorting trace points... [1.806s] Computing alignments... [59.747s] Deallocating buffers... [0.039s] Loading trace points... [0.064s] Sorting trace points... [1.843s] Computing alignments... [55.457s] Deallocating buffers... [0.033s] Loading trace points... [0.053s] Sorting trace points... [1.94s] Computing alignments... [55.547s] Deallocating buffers... [0.04s] Loading trace points... [0.114s] Sorting trace points... [1.427s] Computing alignments... [55.838s] Deallocating buffers... [0.03s] Loading trace points... [0.07s] Sorting trace points... [2.013s] Computing alignments... [58.032s] Deallocating buffers... [0.041s] Loading trace points... [0.08s] Sorting trace points... [1.64s] Computing alignments... [55.367s] Deallocating buffers... [0.028s] Loading trace points... [0.056s] Sorting trace points... [2.024s] Computing alignments... [57.102s] Deallocating buffers... [0.23s] Loading trace points... [0.062s] Sorting trace points... [1.41s] Computing alignments... [55.621s] Deallocating buffers... [0.04s] Loading trace points... [0.067s] Sorting trace points... [1.716s] Computing alignments... [61.013s] Deallocating buffers... [0.045s] Loading trace points... [0.087s] Sorting trace points... [1.843s] Computing alignments... [55.97s] Deallocating buffers... [0.039s] Loading trace points... [0.08s] Sorting trace points... [1.467s] Computing alignments... [55.686s] Deallocating buffers... [0.035s] Loading trace points... [0.053s] Sorting trace points... [1.722s] Computing alignments... [56.827s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.957s] Computing alignments... [55.106s] Deallocating buffers... [0.171s] Loading trace points... [0s] [943.866s] Deallocating reference... [0.058s] Loading reference sequences... [29.398s] Masking reference... [30.866s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.889s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.561s] Building query seed array... [2.858s] Computing hash join... [6.237s] Masking low complexity seeds... [0.304s] Searching alignments... [353.097s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.577s] Building query seed array... [3.951s] Computing hash join... [5.481s] Masking low complexity seeds... [0.267s] Searching alignments... [159.849s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.674s] Building query seed array... [3.686s] Computing hash join... [5.651s] Masking low complexity seeds... [0.306s] Searching alignments... [121.036s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.667s] Building query seed array... [2.929s] Computing hash join... [5.898s] Masking low complexity seeds... [0.265s] Searching alignments... [122.106s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.311s] Building query seed array... [3.023s] Computing hash join... [5.627s] Masking low complexity seeds... [0.249s] Searching alignments... [157.381s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.725s] Building query seed array... [3.142s] Computing hash join... [6.284s] Masking low complexity seeds... [0.265s] Searching alignments... [127.466s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.848s] Building query seed array... [3.53s] Computing hash join... [6.226s] Masking low complexity seeds... [0.265s] Searching alignments... [105.822s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.472s] Building query seed array... [2.741s] Computing hash join... [5.969s] Masking low complexity seeds... [0.261s] Searching alignments... [101.473s] Deallocating memory... [0s] Deallocating buffers... [1.819s] Clearing query masking... [1.791s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.734s] Sorting trace points... [1.912s] Computing alignments... [56.062s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [2.132s] Computing alignments... [57.85s] Deallocating buffers... [0.402s] Loading trace points... [0.084s] Sorting trace points... [1.829s] Computing alignments... [57.375s] Deallocating buffers... [0.041s] Loading trace points... [0.05s] Sorting trace points... [1.672s] Computing alignments... [61.326s] Deallocating buffers... [0.059s] Loading trace points... [0.095s] Sorting trace points... [1.817s] Computing alignments... [57.217s] Deallocating buffers... [0.036s] Loading trace points... [0.061s] Sorting trace points... [1.447s] Computing alignments... [57.016s] Deallocating buffers... [0.05s] Loading trace points... [0.001s] Sorting trace points... [1.622s] Computing alignments... [57.63s] Deallocating buffers... [0.048s] Loading trace points... [0.065s] Sorting trace points... [1.93s] Computing alignments... [59.352s] Deallocating buffers... [0.047s] Loading trace points... [0.085s] Sorting trace points... [1.895s] Computing alignments... [56.442s] Deallocating buffers... [0.037s] Loading trace points... [0.072s] Sorting trace points... [1.596s] Computing alignments... [58.025s] Deallocating buffers... [0.046s] Loading trace points... [0.049s] Sorting trace points... [1.958s] Computing alignments... [56.838s] Deallocating buffers... [0.041s] Loading trace points... [0.001s] Sorting trace points... [1.849s] Computing alignments... [63.659s] Deallocating buffers... [0.052s] Loading trace points... [0.098s] Sorting trace points... [1.944s] Computing alignments... [58.21s] Deallocating buffers... [0.088s] Loading trace points... [0.061s] Sorting trace points... [1.614s] Computing alignments... [57.458s] Deallocating buffers... [0.053s] Loading trace points... [0.088s] Sorting trace points... [1.901s] Computing alignments... [59.06s] Deallocating buffers... [0.041s] Loading trace points... [0s] Sorting trace points... [1.833s] Computing alignments... [57.219s] Deallocating buffers... [0.068s] Loading trace points... [0s] [971.575s] Deallocating reference... [0.078s] Loading reference sequences... [29.258s] Masking reference... [30.91s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.656s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.172s] Building query seed array... [2.904s] Computing hash join... [6.317s] Masking low complexity seeds... [0.284s] Searching alignments... [348.149s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.997s] Building query seed array... [3.803s] Computing hash join... [5.514s] Masking low complexity seeds... [0.256s] Searching alignments... [159.061s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.331s] Building query seed array... [3.547s] Computing hash join... [5.969s] Masking low complexity seeds... [0.256s] Searching alignments... [122.94s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.851s] Building query seed array... [3.182s] Computing hash join... [5.704s] Masking low complexity seeds... [0.256s] Searching alignments... [123.034s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.295s] Building query seed array... [2.721s] Computing hash join... [5.718s] Masking low complexity seeds... [0.265s] Searching alignments... [156.129s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.651s] Building query seed array... [3.132s] Computing hash join... [5.744s] Masking low complexity seeds... [0.286s] Searching alignments... [131.625s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.055s] Building query seed array... [3.357s] Computing hash join... [5.589s] Masking low complexity seeds... [0.287s] Searching alignments... [102.928s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.344s] Building query seed array... [2.785s] Computing hash join... [5.418s] Masking low complexity seeds... [0.258s] Searching alignments... [102.724s] Deallocating memory... [0s] Deallocating buffers... [1.384s] Clearing query masking... [1.724s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.182s] Sorting trace points... [1.942s] Computing alignments... [51.287s] Deallocating buffers... [0.038s] Loading trace points... [0.08s] Sorting trace points... [1.837s] Computing alignments... [52.338s] Deallocating buffers... [0.027s] Loading trace points... [0.121s] Sorting trace points... [1.78s] Computing alignments... [52.467s] Deallocating buffers... [0.027s] Loading trace points... [0.054s] Sorting trace points... [2.227s] Computing alignments... [55.134s] Deallocating buffers... [0.287s] Loading trace points... [0.081s] Sorting trace points... [1.89s] Computing alignments... [51.651s] Deallocating buffers... [0.038s] Loading trace points... [0.09s] Sorting trace points... [1.917s] Computing alignments... [52.02s] Deallocating buffers... [0.036s] Loading trace points... [0.083s] Sorting trace points... [1.938s] Computing alignments... [52.34s] Deallocating buffers... [0.034s] Loading trace points... [0.045s] Sorting trace points... [1.923s] Computing alignments... [53.683s] Deallocating buffers... [0.034s] Loading trace points... [0.063s] Sorting trace points... [1.39s] Computing alignments... [51.807s] Deallocating buffers... [0.025s] Loading trace points... [0.063s] Sorting trace points... [1.867s] Computing alignments... [53.043s] Deallocating buffers... [0.03s] Loading trace points... [0.043s] Sorting trace points... [1.527s] Computing alignments... [52.08s] Deallocating buffers... [0.04s] Loading trace points... [0.407s] Sorting trace points... [2.072s] Computing alignments... [56.877s] Deallocating buffers... [0.041s] Loading trace points... [0.08s] Sorting trace points... [1.899s] Computing alignments... [52.382s] Deallocating buffers... [0.181s] Loading trace points... [0.05s] Sorting trace points... [1.946s] Computing alignments... [52.102s] Deallocating buffers... [0.022s] Loading trace points... [0.07s] Sorting trace points... [1.906s] Computing alignments... [52.715s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.966s] Computing alignments... [52.06s] Deallocating buffers... [0.111s] Loading trace points... [0s] [886.638s] Deallocating reference... [0.061s] Loading reference sequences... [29.191s] Masking reference... [32.166s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.808s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.325s] Building query seed array... [2.96s] Computing hash join... [6.125s] Masking low complexity seeds... [0.258s] Searching alignments... [348.988s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.437s] Building query seed array... [3.948s] Computing hash join... [5.628s] Masking low complexity seeds... [0.251s] Searching alignments... [154.714s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.74s] Building query seed array... [3.851s] Computing hash join... [5.779s] Masking low complexity seeds... [0.267s] Searching alignments... [122.176s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.605s] Building query seed array... [3s] Computing hash join... [5.934s] Masking low complexity seeds... [0.266s] Searching alignments... [120.548s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.683s] Building query seed array... [2.674s] Computing hash join... [5.66s] Masking low complexity seeds... [0.29s] Searching alignments... [160.745s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.79s] Building query seed array... [3.148s] Computing hash join... [5.683s] Masking low complexity seeds... [0.254s] Searching alignments... [128.871s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.091s] Building query seed array... [3.387s] Computing hash join... [5.402s] Masking low complexity seeds... [0.234s] Searching alignments... [104.625s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.314s] Building query seed array... [2.991s] Computing hash join... [5.298s] Masking low complexity seeds... [0.247s] Searching alignments... [100.646s] Deallocating memory... [0s] Deallocating buffers... [1.786s] Clearing query masking... [1.774s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.205s] Sorting trace points... [1.635s] Computing alignments... [59.785s] Deallocating buffers... [0.064s] Loading trace points... [0.058s] Sorting trace points... [1.783s] Computing alignments... [61.463s] Deallocating buffers... [0.162s] Loading trace points... [0.401s] Sorting trace points... [1.849s] Computing alignments... [61.335s] Deallocating buffers... [0.061s] Loading trace points... [0.072s] Sorting trace points... [1.867s] Computing alignments... [64.979s] Deallocating buffers... [0.055s] Loading trace points... [0.001s] Sorting trace points... [1.932s] Computing alignments... [60.375s] Deallocating buffers... [0.065s] Loading trace points... [0.041s] Sorting trace points... [1.998s] Computing alignments... [61.008s] Deallocating buffers... [0.059s] Loading trace points... [0.059s] Sorting trace points... [1.513s] Computing alignments... [61.629s] Deallocating buffers... [0.068s] Loading trace points... [0.1s] Sorting trace points... [1.988s] Computing alignments... [63.143s] Deallocating buffers... [0.067s] Loading trace points... [0.044s] Sorting trace points... [1.409s] Computing alignments... [60.503s] Deallocating buffers... [0.04s] Loading trace points... [0.045s] Sorting trace points... [1.471s] Computing alignments... [61.512s] Deallocating buffers... [0.058s] Loading trace points... [0.086s] Sorting trace points... [1.567s] Computing alignments... [60.157s] Deallocating buffers... [0.066s] Loading trace points... [0.046s] Sorting trace points... [1.802s] Computing alignments... [67.179s] Deallocating buffers... [0.068s] Loading trace points... [0.079s] Sorting trace points... [1.557s] Computing alignments... [62.18s] Deallocating buffers... [0.065s] Loading trace points... [0.104s] Sorting trace points... [1.828s] Computing alignments... [60.775s] Deallocating buffers... [0.056s] Loading trace points... [0s] Sorting trace points... [1.433s] Computing alignments... [62.356s] Deallocating buffers... [0.069s] Loading trace points... [0s] Sorting trace points... [1.484s] Computing alignments... [61.295s] Deallocating buffers... [0.069s] Loading trace points... [0s] [1029.43s] Deallocating reference... [0.075s] Loading reference sequences... [253.879s] Masking reference... [30.904s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.344s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.226s] Building query seed array... [2.907s] Computing hash join... [6.068s] Masking low complexity seeds... [0.264s] Searching alignments... [353.021s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.112s] Building query seed array... [4.005s] Computing hash join... [5.508s] Masking low complexity seeds... [0.253s] Searching alignments... [157.654s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.808s] Building query seed array... [3.635s] Computing hash join... [5.772s] Masking low complexity seeds... [0.302s] Searching alignments... [121.323s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.797s] Building query seed array... [3.076s] Computing hash join... [5.348s] Masking low complexity seeds... [0.269s] Searching alignments... [123.471s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.498s] Building query seed array... [2.719s] Computing hash join... [5.766s] Masking low complexity seeds... [0.277s] Searching alignments... [163.798s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.552s] Building query seed array... [3.173s] Computing hash join... [5.765s] Masking low complexity seeds... [0.254s] Searching alignments... [133.48s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.875s] Building query seed array... [3.425s] Computing hash join... [5.833s] Masking low complexity seeds... [0.301s] Searching alignments... [104.766s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.572s] Building query seed array... [2.773s] Computing hash join... [5.54s] Masking low complexity seeds... [0.25s] Searching alignments... [100.697s] Deallocating memory... [0s] Deallocating buffers... [1.521s] Clearing query masking... [1.763s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.941s] Sorting trace points... [1.984s] Computing alignments... [58.714s] Deallocating buffers... [0.06s] Loading trace points... [0.166s] Sorting trace points... [1.93s] Computing alignments... [60.442s] Deallocating buffers... [0.048s] Loading trace points... [0.068s] Sorting trace points... [1.502s] Computing alignments... [60.385s] Deallocating buffers... [0.068s] Loading trace points... [0.07s] Sorting trace points... [1.561s] Computing alignments... [64s] Deallocating buffers... [0.071s] Loading trace points... [0.056s] Sorting trace points... [1.853s] Computing alignments... [58.935s] Deallocating buffers... [0.047s] Loading trace points... [0.063s] Sorting trace points... [1.707s] Computing alignments... [59.756s] Deallocating buffers... [0.057s] Loading trace points... [0.078s] Sorting trace points... [1.992s] Computing alignments... [60.045s] Deallocating buffers... [0.06s] Loading trace points... [0.06s] Sorting trace points... [2.088s] Computing alignments... [62.263s] Deallocating buffers... [0.056s] Loading trace points... [0.125s] Sorting trace points... [2.032s] Computing alignments... [59.386s] Deallocating buffers... [0.132s] Loading trace points... [0.067s] Sorting trace points... [2.162s] Computing alignments... [60.655s] Deallocating buffers... [0.138s] Loading trace points... [0.089s] Sorting trace points... [1.794s] Computing alignments... [59.289s] Deallocating buffers... [0.057s] Loading trace points... [0.078s] Sorting trace points... [1.672s] Computing alignments... [66.198s] Deallocating buffers... [0.066s] Loading trace points... [0.112s] Sorting trace points... [1.461s] Computing alignments... [60.741s] Deallocating buffers... [0.074s] Loading trace points... [0.049s] Sorting trace points... [1.475s] Computing alignments... [60.137s] Deallocating buffers... [0.066s] Loading trace points... [0.068s] Sorting trace points... [1.779s] Computing alignments... [60.781s] Deallocating buffers... [0.072s] Loading trace points... [0s] Sorting trace points... [1.8s] Computing alignments... [59.553s] Deallocating buffers... [0.076s] Loading trace points... [0s] [1012.62s] Deallocating reference... [0.084s] Loading reference sequences... [31.035s] Masking reference... [31.133s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.179s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.39s] Building query seed array... [2.878s] Computing hash join... [5.784s] Masking low complexity seeds... [0.258s] Searching alignments... [352.985s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.569s] Building query seed array... [3.615s] Computing hash join... [5.89s] Masking low complexity seeds... [0.273s] Searching alignments... [157.174s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.598s] Building query seed array... [3.557s] Computing hash join... [6.658s] Masking low complexity seeds... [0.263s] Searching alignments... [121.372s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.972s] Building query seed array... [2.918s] Computing hash join... [6.118s] Masking low complexity seeds... [0.273s] Searching alignments... [119.433s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.404s] Building query seed array... [2.804s] Computing hash join... [5.802s] Masking low complexity seeds... [0.254s] Searching alignments... [160.742s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.451s] Building query seed array... [3.161s] Computing hash join... [5.854s] Masking low complexity seeds... [0.247s] Searching alignments... [129.64s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.523s] Building query seed array... [3.281s] Computing hash join... [6.038s] Masking low complexity seeds... [0.279s] Searching alignments... [103.749s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.09s] Building query seed array... [2.72s] Computing hash join... [5.867s] Masking low complexity seeds... [0.262s] Searching alignments... [100.549s] Deallocating memory... [0s] Deallocating buffers... [1.03s] Clearing query masking... [1.766s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.887s] Sorting trace points... [1.985s] Computing alignments... [55.156s] Deallocating buffers... [0.033s] Loading trace points... [0.1s] Sorting trace points... [1.861s] Computing alignments... [56.996s] Deallocating buffers... [0.022s] Loading trace points... [0.08s] Sorting trace points... [1.879s] Computing alignments... [56.589s] Deallocating buffers... [0.034s] Loading trace points... [0.057s] Sorting trace points... [1.54s] Computing alignments... [59.746s] Deallocating buffers... [0.036s] Loading trace points... [0.101s] Sorting trace points... [1.481s] Computing alignments... [55.913s] Deallocating buffers... [0.035s] Loading trace points... [0.088s] Sorting trace points... [1.43s] Computing alignments... [56.505s] Deallocating buffers... [0.037s] Loading trace points... [0.094s] Sorting trace points... [1.805s] Computing alignments... [56.369s] Deallocating buffers... [0.035s] Loading trace points... [0.07s] Sorting trace points... [1.953s] Computing alignments... [58.713s] Deallocating buffers... [0.035s] Loading trace points... [0.087s] Sorting trace points... [2.156s] Computing alignments... [55.998s] Deallocating buffers... [0.32s] Loading trace points... [0.098s] Sorting trace points... [1.92s] Computing alignments... [57.303s] Deallocating buffers... [0.034s] Loading trace points... [0.044s] Sorting trace points... [1.913s] Computing alignments... [56.017s] Deallocating buffers... [0.054s] Loading trace points... [0.001s] Sorting trace points... [2.011s] Computing alignments... [61.626s] Deallocating buffers... [0.041s] Loading trace points... [0.088s] Sorting trace points... [2.226s] Computing alignments... [56.97s] Deallocating buffers... [0.422s] Loading trace points... [0.055s] Sorting trace points... [1.6s] Computing alignments... [56.137s] Deallocating buffers... [0.035s] Loading trace points... [0.102s] Sorting trace points... [1.976s] Computing alignments... [57.542s] Deallocating buffers... [0.052s] Loading trace points... [0s] Sorting trace points... [1.922s] Computing alignments... [56.032s] Deallocating buffers... [0.023s] Loading trace points... [0s] [955.612s] Deallocating reference... [0.065s] Loading reference sequences... [25.039s] Masking reference... [25.137s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.871s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.191s] Building query seed array... [2.802s] Computing hash join... [4.691s] Masking low complexity seeds... [0.233s] Searching alignments... [282.04s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.269s] Building query seed array... [3.54s] Computing hash join... [4.789s] Masking low complexity seeds... [0.242s] Searching alignments... [126.145s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.906s] Building query seed array... [3.468s] Computing hash join... [4.731s] Masking low complexity seeds... [0.244s] Searching alignments... [98.624s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [7.963s] Building query seed array... [2.867s] Computing hash join... [4.486s] Masking low complexity seeds... [0.24s] Searching alignments... [96.601s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.251s] Building query seed array... [2.718s] Computing hash join... [4.37s] Masking low complexity seeds... [0.232s] Searching alignments... [127.674s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.331s] Building query seed array... [3.144s] Computing hash join... [4.525s] Masking low complexity seeds... [0.236s] Searching alignments... [104.875s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.204s] Building query seed array... [3.137s] Computing hash join... [4.843s] Masking low complexity seeds... [0.262s] Searching alignments... [84.806s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.361s] Building query seed array... [2.703s] Computing hash join... [4.616s] Masking low complexity seeds... [0.246s] Searching alignments... [82.972s] Deallocating memory... [0s] Deallocating buffers... [0.458s] Clearing query masking... [1.722s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.305s] Sorting trace points... [1.553s] Computing alignments... [43.71s] Deallocating buffers... [0.027s] Loading trace points... [0.071s] Sorting trace points... [1.236s] Computing alignments... [44.878s] Deallocating buffers... [0.028s] Loading trace points... [0.067s] Sorting trace points... [1.339s] Computing alignments... [44.606s] Deallocating buffers... [0.03s] Loading trace points... [0.077s] Sorting trace points... [1.325s] Computing alignments... [47.529s] Deallocating buffers... [0.03s] Loading trace points... [0.075s] Sorting trace points... [1.137s] Computing alignments... [44.372s] Deallocating buffers... [0.028s] Loading trace points... [0.063s] Sorting trace points... [1.532s] Computing alignments... [44.359s] Deallocating buffers... [0.028s] Loading trace points... [0.063s] Sorting trace points... [1.587s] Computing alignments... [44.854s] Deallocating buffers... [0.032s] Loading trace points... [0.085s] Sorting trace points... [1.196s] Computing alignments... [46.026s] Deallocating buffers... [0.03s] Loading trace points... [0.076s] Sorting trace points... [1.292s] Computing alignments... [44.264s] Deallocating buffers... [0.028s] Loading trace points... [0.081s] Sorting trace points... [1.256s] Computing alignments... [45.061s] Deallocating buffers... [0.03s] Loading trace points... [0.053s] Sorting trace points... [1.518s] Computing alignments... [44.13s] Deallocating buffers... [0.032s] Loading trace points... [0.991s] Sorting trace points... [1.643s] Computing alignments... [48.736s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.496s] Computing alignments... [45.036s] Deallocating buffers... [0.034s] Loading trace points... [0.05s] Sorting trace points... [1.205s] Computing alignments... [44.395s] Deallocating buffers... [0.029s] Loading trace points... [0.068s] Sorting trace points... [1.585s] Computing alignments... [45.271s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.217s] Computing alignments... [44.135s] Deallocating buffers... [0.03s] Loading trace points... [0s] [754.184s] Deallocating reference... [0.086s] Loading reference sequences... [0.094s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [4400.35s] [4400.35s] Deallocating queries... [0.069s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.983s] [3.807s] Closing the database... [0s] Cleaning up... [0s] Total time = 39486.8s Reported 3770791975 pairwise alignments, 3770791975 HSPs. 9995972 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-29.trimmed.R1.fastq.gz complete: CH05-29.trimmed.R1.blastx.meganized.daa Now MEGANizing CH05-29.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-29.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (353.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,952.5s) Total reads: 9,995,972 With hits: 9,995,972 Alignments: 2,670,418,190 Assig. Taxonomy: 7,402,388 Assig. SEED: 87,035 Assig. EGGNOG: 30,119 Assig. GTDB: 519,091 Assig. EC: 359,246 Assig. INTERPRO2GO: 1,844,041 MinSupport set to: 4997 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,545 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (35.3s) Min-supp. changes: 3,918 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.9s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 225 Class. SEED: 476 Class. EGGNOG: 1,628 Class. GTDB: 42 Class. EC: 2,377 Class. INTERPRO2GO: 8,720 Total time: 6,362s Peak memory: 34 of 195.3G MEGANization of CH05-29.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-29.trimmed.R2.fastq.gz... 70e64fe0f7501657d95b5582158d19ef /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-29.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-29.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.31s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.756s] Opening the output file... [0s] Loading query sequences... [113.694s] Masking queries... [28.975s] Algorithm: Double-indexed Building query histograms... [22.972s] Loading reference sequences... [29.238s] Masking reference... [32.034s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.261s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.022s] Building query seed array... [2.827s] Computing hash join... [6.064s] Masking low complexity seeds... [0.377s] Searching alignments... [363.193s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.342s] Building query seed array... [3.766s] Computing hash join... [5.736s] Masking low complexity seeds... [0.256s] Searching alignments... [159.546s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.683s] Building query seed array... [3.67s] Computing hash join... [5.678s] Masking low complexity seeds... [0.257s] Searching alignments... [123.342s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.062s] Building query seed array... [3.054s] Computing hash join... [6.156s] Masking low complexity seeds... [0.331s] Searching alignments... [124.108s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.12s] Building query seed array... [2.685s] Computing hash join... [5.643s] Masking low complexity seeds... [0.242s] Searching alignments... [160.963s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.377s] Building query seed array... [3.174s] Computing hash join... [5.259s] Masking low complexity seeds... [0.29s] Searching alignments... [130.471s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.377s] Building query seed array... [3.373s] Computing hash join... [5.528s] Masking low complexity seeds... [0.246s] Searching alignments... [105.956s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.106s] Building query seed array... [2.675s] Computing hash join... [5.296s] Masking low complexity seeds... [0.242s] Searching alignments... [105.389s] Deallocating memory... [0s] Deallocating buffers... [0.986s] Clearing query masking... [1.72s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.11s] Sorting trace points... [1.719s] Computing alignments... [56.673s] Deallocating buffers... [0.038s] Loading trace points... [0.056s] Sorting trace points... [1.935s] Computing alignments... [57.265s] Deallocating buffers... [0.04s] Loading trace points... [0.046s] Sorting trace points... [1.889s] Computing alignments... [56.478s] Deallocating buffers... [0.035s] Loading trace points... [1.186s] Sorting trace points... [2.029s] Computing alignments... [57.41s] Deallocating buffers... [0.027s] Loading trace points... [0.571s] Sorting trace points... [1.658s] Computing alignments... [57.286s] Deallocating buffers... [0.038s] Loading trace points... [0.075s] Sorting trace points... [1.764s] Computing alignments... [58.656s] Deallocating buffers... [0.041s] Loading trace points... [1.054s] Sorting trace points... [1.498s] Computing alignments... [58.23s] Deallocating buffers... [0.027s] Loading trace points... [0.32s] Sorting trace points... [1.96s] Computing alignments... [56.582s] Deallocating buffers... [0.034s] Loading trace points... [0.073s] Sorting trace points... [1.921s] Computing alignments... [56.118s] Deallocating buffers... [0.039s] Loading trace points... [0.066s] Sorting trace points... [1.504s] Computing alignments... [57.647s] Deallocating buffers... [0.026s] Loading trace points... [0.078s] Sorting trace points... [1.411s] Computing alignments... [57.445s] Deallocating buffers... [0.037s] Loading trace points... [0.085s] Sorting trace points... [1.52s] Computing alignments... [59.681s] Deallocating buffers... [0.026s] Loading trace points... [0.051s] Sorting trace points... [1.999s] Computing alignments... [56.309s] Deallocating buffers... [0.034s] Loading trace points... [0.086s] Sorting trace points... [1.904s] Computing alignments... [55.842s] Deallocating buffers... [0.039s] Loading trace points... [0.055s] Sorting trace points... [1.852s] Computing alignments... [56.394s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.892s] Computing alignments... [55.248s] Deallocating buffers... [0.034s] Loading trace points... [0s] [957.319s] Deallocating reference... [0.076s] Loading reference sequences... [31.613s] Masking reference... [32.185s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.627s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.208s] Building query seed array... [2.856s] Computing hash join... [5.953s] Masking low complexity seeds... [0.265s] Searching alignments... [359.567s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.637s] Building query seed array... [3.662s] Computing hash join... [6.219s] Masking low complexity seeds... [0.262s] Searching alignments... [159.95s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.158s] Building query seed array... [3.778s] Computing hash join... [5.314s] Masking low complexity seeds... [0.263s] Searching alignments... [119.994s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.271s] Building query seed array... [3.005s] Computing hash join... [5.752s] Masking low complexity seeds... [0.272s] Searching alignments... [122.91s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.205s] Building query seed array... [2.721s] Computing hash join... [5.5s] Masking low complexity seeds... [0.246s] Searching alignments... [169.147s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.705s] Building query seed array... [3.388s] Computing hash join... [5.752s] Masking low complexity seeds... [0.242s] Searching alignments... [132.463s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.256s] Building query seed array... [3.245s] Computing hash join... [5.963s] Masking low complexity seeds... [0.279s] Searching alignments... [103.674s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.809s] Building query seed array... [2.811s] Computing hash join... [5.535s] Masking low complexity seeds... [0.264s] Searching alignments... [104.82s] Deallocating memory... [0s] Deallocating buffers... [1.509s] Clearing query masking... [1.769s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.18s] Sorting trace points... [1.59s] Computing alignments... [59.598s] Deallocating buffers... [0.062s] Loading trace points... [0.078s] Sorting trace points... [1.422s] Computing alignments... [59.643s] Deallocating buffers... [0.069s] Loading trace points... [0.073s] Sorting trace points... [1.662s] Computing alignments... [58.229s] Deallocating buffers... [0.066s] Loading trace points... [0.093s] Sorting trace points... [1.645s] Computing alignments... [59.942s] Deallocating buffers... [0.071s] Loading trace points... [0.081s] Sorting trace points... [1.857s] Computing alignments... [59.701s] Deallocating buffers... [0.073s] Loading trace points... [0.095s] Sorting trace points... [1.651s] Computing alignments... [62.413s] Deallocating buffers... [0.071s] Loading trace points... [0.071s] Sorting trace points... [1.443s] Computing alignments... [61.831s] Deallocating buffers... [0.073s] Loading trace points... [0.066s] Sorting trace points... [1.963s] Computing alignments... [59.001s] Deallocating buffers... [0.07s] Loading trace points... [0.052s] Sorting trace points... [1.776s] Computing alignments... [58.758s] Deallocating buffers... [0.074s] Loading trace points... [0.074s] Sorting trace points... [1.568s] Computing alignments... [60.391s] Deallocating buffers... [0.074s] Loading trace points... [0.066s] Sorting trace points... [2.062s] Computing alignments... [60.049s] Deallocating buffers... [0.08s] Loading trace points... [0.598s] Sorting trace points... [1.934s] Computing alignments... [62.752s] Deallocating buffers... [0.078s] Loading trace points... [0.069s] Sorting trace points... [1.927s] Computing alignments... [58.122s] Deallocating buffers... [0.05s] Loading trace points... [0.088s] Sorting trace points... [1.881s] Computing alignments... [59.234s] Deallocating buffers... [0.087s] Loading trace points... [0.074s] Sorting trace points... [1.949s] Computing alignments... [58.661s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [1.627s] Computing alignments... [57.107s] Deallocating buffers... [0.071s] Loading trace points... [0s] [996.457s] Deallocating reference... [0.083s] Loading reference sequences... [29.431s] Masking reference... [30.925s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.248s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.784s] Building query seed array... [2.908s] Computing hash join... [5.858s] Masking low complexity seeds... [0.262s] Searching alignments... [361.538s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.214s] Building query seed array... [3.982s] Computing hash join... [6.159s] Masking low complexity seeds... [0.287s] Searching alignments... [165.424s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.369s] Building query seed array... [3.607s] Computing hash join... [5.736s] Masking low complexity seeds... [0.266s] Searching alignments... [122.511s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.876s] Building query seed array... [3.026s] Computing hash join... [5.648s] Masking low complexity seeds... [0.264s] Searching alignments... [119.638s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.443s] Building query seed array... [2.777s] Computing hash join... [5.436s] Masking low complexity seeds... [0.257s] Searching alignments... [163.643s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.216s] Building query seed array... [3.188s] Computing hash join... [5.648s] Masking low complexity seeds... [0.253s] Searching alignments... [136.565s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.378s] Building query seed array... [3.461s] Computing hash join... [5.568s] Masking low complexity seeds... [0.305s] Searching alignments... [105.304s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.337s] Building query seed array... [2.752s] Computing hash join... [5.435s] Masking low complexity seeds... [0.25s] Searching alignments... [103.576s] Deallocating memory... [0s] Deallocating buffers... [0.885s] Clearing query masking... [1.776s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.33s] Sorting trace points... [1.658s] Computing alignments... [59.325s] Deallocating buffers... [0.085s] Loading trace points... [0.05s] Sorting trace points... [1.75s] Computing alignments... [59.184s] Deallocating buffers... [0.086s] Loading trace points... [0.051s] Sorting trace points... [1.615s] Computing alignments... [57.665s] Deallocating buffers... [0.062s] Loading trace points... [0.083s] Sorting trace points... [1.457s] Computing alignments... [58.683s] Deallocating buffers... [0.059s] Loading trace points... [0.067s] Sorting trace points... [1.964s] Computing alignments... [58.953s] Deallocating buffers... [0.068s] Loading trace points... [0.103s] Sorting trace points... [1.678s] Computing alignments... [61.541s] Deallocating buffers... [0.081s] Loading trace points... [0.064s] Sorting trace points... [1.631s] Computing alignments... [60.925s] Deallocating buffers... [0.072s] Loading trace points... [0.05s] Sorting trace points... [1.809s] Computing alignments... [57.997s] Deallocating buffers... [0.057s] Loading trace points... [0.074s] Sorting trace points... [1.677s] Computing alignments... [58.038s] Deallocating buffers... [0.064s] Loading trace points... [0.079s] Sorting trace points... [1.815s] Computing alignments... [59.475s] Deallocating buffers... [0.062s] Loading trace points... [0.068s] Sorting trace points... [1.648s] Computing alignments... [59.335s] Deallocating buffers... [0.075s] Loading trace points... [0.1s] Sorting trace points... [1.567s] Computing alignments... [62.163s] Deallocating buffers... [0.065s] Loading trace points... [0.066s] Sorting trace points... [1.422s] Computing alignments... [57.387s] Deallocating buffers... [0.062s] Loading trace points... [0.066s] Sorting trace points... [1.6s] Computing alignments... [58.046s] Deallocating buffers... [0.075s] Loading trace points... [0.072s] Sorting trace points... [1.583s] Computing alignments... [57.481s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [1.268s] Computing alignments... [55.76s] Deallocating buffers... [0.046s] Loading trace points... [0s] [980.66s] Deallocating reference... [0.071s] Loading reference sequences... [29.078s] Masking reference... [30.903s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.892s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.998s] Building query seed array... [2.711s] Computing hash join... [5.97s] Masking low complexity seeds... [0.29s] Searching alignments... [361.255s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.175s] Building query seed array... [3.968s] Computing hash join... [5.869s] Masking low complexity seeds... [0.284s] Searching alignments... [163.572s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.697s] Building query seed array... [3.691s] Computing hash join... [5.965s] Masking low complexity seeds... [0.288s] Searching alignments... [124.58s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.398s] Building query seed array... [3.058s] Computing hash join... [6.27s] Masking low complexity seeds... [0.313s] Searching alignments... [123.8s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.874s] Building query seed array... [2.934s] Computing hash join... [5.446s] Masking low complexity seeds... [0.241s] Searching alignments... [165.535s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.764s] Building query seed array... [3.178s] Computing hash join... [5.618s] Masking low complexity seeds... [0.25s] Searching alignments... [134.289s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.325s] Building query seed array... [3.553s] Computing hash join... [6.016s] Masking low complexity seeds... [0.245s] Searching alignments... [105.999s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.853s] Building query seed array... [2.761s] Computing hash join... [5.776s] Masking low complexity seeds... [0.249s] Searching alignments... [104.277s] Deallocating memory... [0s] Deallocating buffers... [1.902s] Clearing query masking... [1.745s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.997s] Sorting trace points... [1.968s] Computing alignments... [57.622s] Deallocating buffers... [0.043s] Loading trace points... [0.063s] Sorting trace points... [1.531s] Computing alignments... [57.598s] Deallocating buffers... [0.045s] Loading trace points... [0.072s] Sorting trace points... [1.948s] Computing alignments... [56.063s] Deallocating buffers... [0.023s] Loading trace points... [0.057s] Sorting trace points... [1.756s] Computing alignments... [57.486s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.676s] Computing alignments... [57.787s] Deallocating buffers... [0.046s] Loading trace points... [0.128s] Sorting trace points... [2s] Computing alignments... [59.302s] Deallocating buffers... [0.04s] Loading trace points... [0.116s] Sorting trace points... [1.738s] Computing alignments... [59.353s] Deallocating buffers... [0.064s] Loading trace points... [0.09s] Sorting trace points... [1.934s] Computing alignments... [56.502s] Deallocating buffers... [0.036s] Loading trace points... [0.049s] Sorting trace points... [1.954s] Computing alignments... [56.197s] Deallocating buffers... [0.03s] Loading trace points... [0.055s] Sorting trace points... [1.785s] Computing alignments... [58.213s] Deallocating buffers... [0.146s] Loading trace points... [0.035s] Sorting trace points... [1.741s] Computing alignments... [57.809s] Deallocating buffers... [0.032s] Loading trace points... [0.091s] Sorting trace points... [2.002s] Computing alignments... [60.331s] Deallocating buffers... [0.042s] Loading trace points... [0.061s] Sorting trace points... [1.612s] Computing alignments... [56.268s] Deallocating buffers... [0.035s] Loading trace points... [0.086s] Sorting trace points... [1.668s] Computing alignments... [56.824s] Deallocating buffers... [0.037s] Loading trace points... [0.173s] Sorting trace points... [1.641s] Computing alignments... [56.737s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.897s] Computing alignments... [55.01s] Deallocating buffers... [0.095s] Loading trace points... [0s] [959.965s] Deallocating reference... [0.057s] Loading reference sequences... [32.914s] Masking reference... [31.172s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.543s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.379s] Building query seed array... [2.89s] Computing hash join... [5.967s] Masking low complexity seeds... [0.258s] Searching alignments... [357.724s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.424s] Building query seed array... [3.628s] Computing hash join... [6.336s] Masking low complexity seeds... [0.269s] Searching alignments... [158.055s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.194s] Building query seed array... [3.475s] Computing hash join... [6.427s] Masking low complexity seeds... [0.26s] Searching alignments... [120.69s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.861s] Building query seed array... [2.918s] Computing hash join... [6.339s] Masking low complexity seeds... [0.26s] Searching alignments... [122.191s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.833s] Building query seed array... [2.551s] Computing hash join... [6.28s] Masking low complexity seeds... [0.269s] Searching alignments... [166.106s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.441s] Building query seed array... [3.073s] Computing hash join... [6.561s] Masking low complexity seeds... [0.258s] Searching alignments... [131.959s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.38s] Building query seed array... [3.094s] Computing hash join... [6.373s] Masking low complexity seeds... [0.258s] Searching alignments... [105.661s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.135s] Building query seed array... [2.587s] Computing hash join... [6.349s] Masking low complexity seeds... [0.244s] Searching alignments... [104.83s] Deallocating memory... [0s] Deallocating buffers... [0.557s] Clearing query masking... [1.873s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.101s] Sorting trace points... [2.022s] Computing alignments... [60.859s] Deallocating buffers... [0.059s] Loading trace points... [0.045s] Sorting trace points... [1.609s] Computing alignments... [61.07s] Deallocating buffers... [0.051s] Loading trace points... [0.086s] Sorting trace points... [1.926s] Computing alignments... [58.908s] Deallocating buffers... [0.048s] Loading trace points... [0.064s] Sorting trace points... [1.718s] Computing alignments... [61.234s] Deallocating buffers... [0.056s] Loading trace points... [0.002s] Sorting trace points... [1.507s] Computing alignments... [61.121s] Deallocating buffers... [0.044s] Loading trace points... [0.054s] Sorting trace points... [1.806s] Computing alignments... [63.451s] Deallocating buffers... [0.059s] Loading trace points... [0.001s] Sorting trace points... [1.864s] Computing alignments... [62.484s] Deallocating buffers... [0.06s] Loading trace points... [0.001s] Sorting trace points... [1.589s] Computing alignments... [59.312s] Deallocating buffers... [0.062s] Loading trace points... [0.097s] Sorting trace points... [1.541s] Computing alignments... [59.558s] Deallocating buffers... [0.037s] Loading trace points... [0.091s] Sorting trace points... [1.432s] Computing alignments... [61.125s] Deallocating buffers... [0.048s] Loading trace points... [0.046s] Sorting trace points... [1.849s] Computing alignments... [61.204s] Deallocating buffers... [0.055s] Loading trace points... [0.065s] Sorting trace points... [1.508s] Computing alignments... [64.341s] Deallocating buffers... [0.057s] Loading trace points... [0.121s] Sorting trace points... [1.756s] Computing alignments... [59.26s] Deallocating buffers... [0.054s] Loading trace points... [0.053s] Sorting trace points... [1.735s] Computing alignments... [60.188s] Deallocating buffers... [0.045s] Loading trace points... [0.045s] Sorting trace points... [1.404s] Computing alignments... [58.808s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.876s] Computing alignments... [57.649s] Deallocating buffers... [0.051s] Loading trace points... [0s] [1009.63s] Deallocating reference... [0.073s] Loading reference sequences... [258.512s] Masking reference... [30.941s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.411s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.273s] Building query seed array... [2.854s] Computing hash join... [6.314s] Masking low complexity seeds... [0.259s] Searching alignments... [358.359s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.604s] Building query seed array... [3.827s] Computing hash join... [5.761s] Masking low complexity seeds... [0.283s] Searching alignments... [159.681s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.379s] Building query seed array... [3.57s] Computing hash join... [5.924s] Masking low complexity seeds... [0.26s] Searching alignments... [120.58s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.83s] Building query seed array... [3.045s] Computing hash join... [5.517s] Masking low complexity seeds... [0.267s] Searching alignments... [121.073s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.274s] Building query seed array... [2.809s] Computing hash join... [5.169s] Masking low complexity seeds... [0.258s] Searching alignments... [161.865s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.231s] Building query seed array... [3.201s] Computing hash join... [5.661s] Masking low complexity seeds... [0.249s] Searching alignments... [133.87s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.438s] Building query seed array... [3.409s] Computing hash join... [5.329s] Masking low complexity seeds... [0.242s] Searching alignments... [105.763s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.362s] Building query seed array... [2.697s] Computing hash join... [5.568s] Masking low complexity seeds... [0.244s] Searching alignments... [103.526s] Deallocating memory... [0s] Deallocating buffers... [1.695s] Clearing query masking... [1.726s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.149s] Sorting trace points... [1.865s] Computing alignments... [58.576s] Deallocating buffers... [0.056s] Loading trace points... [0.045s] Sorting trace points... [1.958s] Computing alignments... [59.531s] Deallocating buffers... [0.048s] Loading trace points... [0.075s] Sorting trace points... [1.948s] Computing alignments... [57.188s] Deallocating buffers... [0.033s] Loading trace points... [0.075s] Sorting trace points... [1.964s] Computing alignments... [58.82s] Deallocating buffers... [0.039s] Loading trace points... [0.057s] Sorting trace points... [1.398s] Computing alignments... [58.841s] Deallocating buffers... [0.038s] Loading trace points... [0.049s] Sorting trace points... [1.964s] Computing alignments... [61.27s] Deallocating buffers... [0.045s] Loading trace points... [0.062s] Sorting trace points... [2.114s] Computing alignments... [60.696s] Deallocating buffers... [0.133s] Loading trace points... [0.176s] Sorting trace points... [1.473s] Computing alignments... [57.046s] Deallocating buffers... [0.025s] Loading trace points... [0.08s] Sorting trace points... [1.384s] Computing alignments... [57.014s] Deallocating buffers... [0.039s] Loading trace points... [0.073s] Sorting trace points... [1.486s] Computing alignments... [58.686s] Deallocating buffers... [0.046s] Loading trace points... [0.064s] Sorting trace points... [1.939s] Computing alignments... [59.437s] Deallocating buffers... [0.039s] Loading trace points... [0.079s] Sorting trace points... [2.166s] Computing alignments... [61.011s] Deallocating buffers... [0.172s] Loading trace points... [0.467s] Sorting trace points... [1.908s] Computing alignments... [56.708s] Deallocating buffers... [0.036s] Loading trace points... [0.062s] Sorting trace points... [1.909s] Computing alignments... [57.962s] Deallocating buffers... [0.037s] Loading trace points... [0.077s] Sorting trace points... [1.868s] Computing alignments... [57.013s] Deallocating buffers... [0.115s] Loading trace points... [0s] Sorting trace points... [1.6s] Computing alignments... [55.901s] Deallocating buffers... [0.034s] Loading trace points... [0s] [977.326s] Deallocating reference... [0.088s] Loading reference sequences... [31.119s] Masking reference... [32.093s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.95s] Building reference histograms... [32.396s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.196s] Building query seed array... [2.809s] Computing hash join... [5.905s] Masking low complexity seeds... [0.263s] Searching alignments... [361.359s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.093s] Building query seed array... [3.736s] Computing hash join... [5.946s] Masking low complexity seeds... [0.255s] Searching alignments... [159.669s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.759s] Building query seed array... [3.576s] Computing hash join... [5.964s] Masking low complexity seeds... [0.269s] Searching alignments... [122.549s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.476s] Building query seed array... [3.018s] Computing hash join... [5.98s] Masking low complexity seeds... [0.309s] Searching alignments... [121.945s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.681s] Building query seed array... [2.728s] Computing hash join... [5.419s] Masking low complexity seeds... [0.306s] Searching alignments... [165.014s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.676s] Building query seed array... [3.09s] Computing hash join... [5.599s] Masking low complexity seeds... [0.271s] Searching alignments... [134.125s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.389s] Building query seed array... [3.22s] Computing hash join... [5.649s] Masking low complexity seeds... [0.247s] Searching alignments... [104.352s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.615s] Building query seed array... [2.926s] Computing hash join... [5.587s] Masking low complexity seeds... [0.261s] Searching alignments... [104.622s] Deallocating memory... [0s] Deallocating buffers... [1.409s] Clearing query masking... [1.731s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.083s] Sorting trace points... [1.915s] Computing alignments... [58.587s] Deallocating buffers... [0.034s] Loading trace points... [0.087s] Sorting trace points... [1.945s] Computing alignments... [60.089s] Deallocating buffers... [0.045s] Loading trace points... [0.075s] Sorting trace points... [1.648s] Computing alignments... [57.636s] Deallocating buffers... [0.036s] Loading trace points... [0.001s] Sorting trace points... [1.895s] Computing alignments... [59.614s] Deallocating buffers... [0.036s] Loading trace points... [0.065s] Sorting trace points... [1.716s] Computing alignments... [59.508s] Deallocating buffers... [0.035s] Loading trace points... [0.092s] Sorting trace points... [1.528s] Computing alignments... [61.778s] Deallocating buffers... [0.047s] Loading trace points... [0.082s] Sorting trace points... [1.974s] Computing alignments... [61.129s] Deallocating buffers... [0.032s] Loading trace points... [0.359s] Sorting trace points... [1.976s] Computing alignments... [58.028s] Deallocating buffers... [0.119s] Loading trace points... [0.039s] Sorting trace points... [1.936s] Computing alignments... [57.521s] Deallocating buffers... [0.034s] Loading trace points... [0.445s] Sorting trace points... [1.708s] Computing alignments... [59.338s] Deallocating buffers... [0.04s] Loading trace points... [0.074s] Sorting trace points... [1.937s] Computing alignments... [59.618s] Deallocating buffers... [0.044s] Loading trace points... [0.049s] Sorting trace points... [2.039s] Computing alignments... [61.935s] Deallocating buffers... [0.036s] Loading trace points... [0.128s] Sorting trace points... [1.487s] Computing alignments... [57.543s] Deallocating buffers... [0.04s] Loading trace points... [0.099s] Sorting trace points... [1.997s] Computing alignments... [58.147s] Deallocating buffers... [0.039s] Loading trace points... [0.083s] Sorting trace points... [1.501s] Computing alignments... [57.457s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.839s] Computing alignments... [56.42s] Deallocating buffers... [0.023s] Loading trace points... [0s] [986.1s] Deallocating reference... [0.063s] Loading reference sequences... [29.178s] Masking reference... [30.863s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.947s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.282s] Building query seed array... [2.864s] Computing hash join... [5.977s] Masking low complexity seeds... [0.268s] Searching alignments... [355.931s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.535s] Building query seed array... [3.923s] Computing hash join... [6.035s] Masking low complexity seeds... [0.25s] Searching alignments... [161.285s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.591s] Building query seed array... [3.549s] Computing hash join... [5.866s] Masking low complexity seeds... [0.257s] Searching alignments... [121.37s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.374s] Building query seed array... [3.046s] Computing hash join... [5.584s] Masking low complexity seeds... [0.267s] Searching alignments... [120.843s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.45s] Building query seed array... [2.666s] Computing hash join... [5.524s] Masking low complexity seeds... [0.254s] Searching alignments... [164.791s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.496s] Building query seed array... [3.215s] Computing hash join... [5.645s] Masking low complexity seeds... [0.251s] Searching alignments... [129.909s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.086s] Building query seed array... [3.341s] Computing hash join... [6.116s] Masking low complexity seeds... [0.268s] Searching alignments... [104.221s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.126s] Building query seed array... [2.804s] Computing hash join... [5.6s] Masking low complexity seeds... [0.252s] Searching alignments... [103.753s] Deallocating memory... [0s] Deallocating buffers... [1.204s] Clearing query masking... [1.816s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.199s] Sorting trace points... [1.917s] Computing alignments... [56.157s] Deallocating buffers... [0.033s] Loading trace points... [0.063s] Sorting trace points... [1.543s] Computing alignments... [56.902s] Deallocating buffers... [0.028s] Loading trace points... [0.075s] Sorting trace points... [1.744s] Computing alignments... [55.129s] Deallocating buffers... [0.038s] Loading trace points... [0.07s] Sorting trace points... [1.461s] Computing alignments... [56.911s] Deallocating buffers... [0.04s] Loading trace points... [0.048s] Sorting trace points... [1.477s] Computing alignments... [56.841s] Deallocating buffers... [0.045s] Loading trace points... [0.053s] Sorting trace points... [1.655s] Computing alignments... [59.21s] Deallocating buffers... [0.046s] Loading trace points... [0.001s] Sorting trace points... [2.266s] Computing alignments... [58.759s] Deallocating buffers... [0.197s] Loading trace points... [0.078s] Sorting trace points... [2.154s] Computing alignments... [56.157s] Deallocating buffers... [0.223s] Loading trace points... [0.105s] Sorting trace points... [1.424s] Computing alignments... [55.443s] Deallocating buffers... [0.039s] Loading trace points... [0.094s] Sorting trace points... [1.622s] Computing alignments... [57.209s] Deallocating buffers... [0.027s] Loading trace points... [0.043s] Sorting trace points... [1.488s] Computing alignments... [56.901s] Deallocating buffers... [0.039s] Loading trace points... [0.103s] Sorting trace points... [1.964s] Computing alignments... [59.297s] Deallocating buffers... [0.051s] Loading trace points... [0.069s] Sorting trace points... [1.943s] Computing alignments... [55.676s] Deallocating buffers... [0.242s] Loading trace points... [0.08s] Sorting trace points... [1.904s] Computing alignments... [55.749s] Deallocating buffers... [0.061s] Loading trace points... [0.08s] Sorting trace points... [1.415s] Computing alignments... [55.555s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.873s] Computing alignments... [54.149s] Deallocating buffers... [0.038s] Loading trace points... [0s] [946.432s] Deallocating reference... [0.079s] Loading reference sequences... [31.282s] Masking reference... [32.124s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.883s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.232s] Building query seed array... [2.783s] Computing hash join... [5.959s] Masking low complexity seeds... [0.271s] Searching alignments... [356.218s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.874s] Building query seed array... [3.665s] Computing hash join... [6.463s] Masking low complexity seeds... [0.279s] Searching alignments... [161.884s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.643s] Building query seed array... [3.421s] Computing hash join... [6.591s] Masking low complexity seeds... [0.295s] Searching alignments... [125.648s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.419s] Building query seed array... [2.948s] Computing hash join... [6.243s] Masking low complexity seeds... [0.274s] Searching alignments... [121.698s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.37s] Building query seed array... [2.619s] Computing hash join... [5.905s] Masking low complexity seeds... [0.246s] Searching alignments... [165.343s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.834s] Building query seed array... [3.087s] Computing hash join... [6.307s] Masking low complexity seeds... [0.27s] Searching alignments... [133.86s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.558s] Building query seed array... [3.231s] Computing hash join... [6.12s] Masking low complexity seeds... [0.25s] Searching alignments... [107.013s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.923s] Building query seed array... [2.678s] Computing hash join... [6.2s] Masking low complexity seeds... [0.263s] Searching alignments... [103.994s] Deallocating memory... [0s] Deallocating buffers... [0.938s] Clearing query masking... [1.806s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.912s] Sorting trace points... [1.98s] Computing alignments... [58.671s] Deallocating buffers... [0.044s] Loading trace points... [0.073s] Sorting trace points... [2.014s] Computing alignments... [58.259s] Deallocating buffers... [0.314s] Loading trace points... [0.041s] Sorting trace points... [1.975s] Computing alignments... [56.889s] Deallocating buffers... [0.053s] Loading trace points... [0.095s] Sorting trace points... [1.568s] Computing alignments... [58.355s] Deallocating buffers... [0.059s] Loading trace points... [0.073s] Sorting trace points... [1.939s] Computing alignments... [59.226s] Deallocating buffers... [0.054s] Loading trace points... [0.074s] Sorting trace points... [1.816s] Computing alignments... [61.396s] Deallocating buffers... [0.049s] Loading trace points... [0.057s] Sorting trace points... [1.979s] Computing alignments... [60.064s] Deallocating buffers... [0.068s] Loading trace points... [0.067s] Sorting trace points... [1.981s] Computing alignments... [57.169s] Deallocating buffers... [0.083s] Loading trace points... [0.058s] Sorting trace points... [1.892s] Computing alignments... [57.52s] Deallocating buffers... [0.05s] Loading trace points... [0.067s] Sorting trace points... [1.947s] Computing alignments... [59.401s] Deallocating buffers... [0.058s] Loading trace points... [0.068s] Sorting trace points... [1.487s] Computing alignments... [58.955s] Deallocating buffers... [0.072s] Loading trace points... [0.046s] Sorting trace points... [1.867s] Computing alignments... [61.75s] Deallocating buffers... [0.065s] Loading trace points... [0.084s] Sorting trace points... [1.909s] Computing alignments... [56.957s] Deallocating buffers... [0.053s] Loading trace points... [0.08s] Sorting trace points... [1.76s] Computing alignments... [57.486s] Deallocating buffers... [0.059s] Loading trace points... [0.095s] Sorting trace points... [1.891s] Computing alignments... [56.823s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [1.594s] Computing alignments... [55.351s] Deallocating buffers... [0.057s] Loading trace points... [0s] [976.602s] Deallocating reference... [0.09s] Loading reference sequences... [28.979s] Masking reference... [32.09s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [31.969s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.139s] Building query seed array... [2.865s] Computing hash join... [5.791s] Masking low complexity seeds... [0.274s] Searching alignments... [357.856s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.514s] Building query seed array... [3.922s] Computing hash join... [5.989s] Masking low complexity seeds... [0.293s] Searching alignments... [163.063s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.525s] Building query seed array... [3.48s] Computing hash join... [6.372s] Masking low complexity seeds... [0.266s] Searching alignments... [122.706s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.905s] Building query seed array... [2.956s] Computing hash join... [5.892s] Masking low complexity seeds... [0.262s] Searching alignments... [120.39s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.282s] Building query seed array... [2.689s] Computing hash join... [5.667s] Masking low complexity seeds... [0.249s] Searching alignments... [162.893s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.263s] Building query seed array... [3.202s] Computing hash join... [5.882s] Masking low complexity seeds... [0.253s] Searching alignments... [136.81s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.811s] Building query seed array... [3.44s] Computing hash join... [5.863s] Masking low complexity seeds... [0.264s] Searching alignments... [105.85s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.182s] Building query seed array... [2.702s] Computing hash join... [5.749s] Masking low complexity seeds... [0.251s] Searching alignments... [104.205s] Deallocating memory... [0s] Deallocating buffers... [0.989s] Clearing query masking... [1.862s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.287s] Sorting trace points... [2.017s] Computing alignments... [52.483s] Deallocating buffers... [0.028s] Loading trace points... [0.883s] Sorting trace points... [1.966s] Computing alignments... [53.255s] Deallocating buffers... [0.029s] Loading trace points... [0.07s] Sorting trace points... [1.358s] Computing alignments... [52.386s] Deallocating buffers... [0.036s] Loading trace points... [0.132s] Sorting trace points... [1.779s] Computing alignments... [53.676s] Deallocating buffers... [0.041s] Loading trace points... [0.078s] Sorting trace points... [1.965s] Computing alignments... [52.723s] Deallocating buffers... [0.033s] Loading trace points... [0.086s] Sorting trace points... [1.924s] Computing alignments... [54.367s] Deallocating buffers... [0.026s] Loading trace points... [0.055s] Sorting trace points... [1.907s] Computing alignments... [54.176s] Deallocating buffers... [0.029s] Loading trace points... [0.072s] Sorting trace points... [1.672s] Computing alignments... [52.735s] Deallocating buffers... [0.108s] Loading trace points... [0.076s] Sorting trace points... [1.884s] Computing alignments... [52.436s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.805s] Computing alignments... [53.691s] Deallocating buffers... [0.06s] Loading trace points... [0.068s] Sorting trace points... [1.544s] Computing alignments... [53.728s] Deallocating buffers... [0.036s] Loading trace points... [0.055s] Sorting trace points... [1.989s] Computing alignments... [55.72s] Deallocating buffers... [0.023s] Loading trace points... [0.082s] Sorting trace points... [1.955s] Computing alignments... [52.152s] Deallocating buffers... [0.023s] Loading trace points... [0.062s] Sorting trace points... [1.83s] Computing alignments... [52.281s] Deallocating buffers... [0.023s] Loading trace points... [0.512s] Sorting trace points... [1.926s] Computing alignments... [52.111s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.856s] Computing alignments... [51.305s] Deallocating buffers... [0.033s] Loading trace points... [0s] [891.827s] Deallocating reference... [0.073s] Loading reference sequences... [29.286s] Masking reference... [31.012s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.525s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.394s] Building query seed array... [2.809s] Computing hash join... [6.194s] Masking low complexity seeds... [0.276s] Searching alignments... [361.754s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.224s] Building query seed array... [3.848s] Computing hash join... [6.031s] Masking low complexity seeds... [0.261s] Searching alignments... [164.248s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.202s] Building query seed array... [3.496s] Computing hash join... [5.697s] Masking low complexity seeds... [0.263s] Searching alignments... [122.059s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.764s] Building query seed array... [3.039s] Computing hash join... [5.73s] Masking low complexity seeds... [0.278s] Searching alignments... [123.426s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.405s] Building query seed array... [2.799s] Computing hash join... [5.491s] Masking low complexity seeds... [0.258s] Searching alignments... [164.912s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.403s] Building query seed array... [3.033s] Computing hash join... [5.473s] Masking low complexity seeds... [0.242s] Searching alignments... [132.143s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.765s] Building query seed array... [3.339s] Computing hash join... [5.784s] Masking low complexity seeds... [0.263s] Searching alignments... [105.243s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.566s] Building query seed array... [2.736s] Computing hash join... [6.051s] Masking low complexity seeds... [0.267s] Searching alignments... [104.609s] Deallocating memory... [0s] Deallocating buffers... [1.978s] Clearing query masking... [1.756s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.367s] Sorting trace points... [1.562s] Computing alignments... [62.919s] Deallocating buffers... [0.103s] Loading trace points... [0.001s] Sorting trace points... [1.948s] Computing alignments... [62.331s] Deallocating buffers... [0.108s] Loading trace points... [0.071s] Sorting trace points... [1.471s] Computing alignments... [60.291s] Deallocating buffers... [0.074s] Loading trace points... [0.046s] Sorting trace points... [1.627s] Computing alignments... [62.208s] Deallocating buffers... [0.073s] Loading trace points... [0.102s] Sorting trace points... [1.436s] Computing alignments... [62.429s] Deallocating buffers... [0.069s] Loading trace points... [0.057s] Sorting trace points... [2.015s] Computing alignments... [65.007s] Deallocating buffers... [0.077s] Loading trace points... [0.087s] Sorting trace points... [1.481s] Computing alignments... [64.262s] Deallocating buffers... [0.07s] Loading trace points... [0.077s] Sorting trace points... [1.504s] Computing alignments... [60.662s] Deallocating buffers... [0.081s] Loading trace points... [0.059s] Sorting trace points... [1.425s] Computing alignments... [60.681s] Deallocating buffers... [0.064s] Loading trace points... [0.055s] Sorting trace points... [1.884s] Computing alignments... [62.735s] Deallocating buffers... [0.074s] Loading trace points... [0.088s] Sorting trace points... [2.041s] Computing alignments... [61.886s] Deallocating buffers... [0.214s] Loading trace points... [0.057s] Sorting trace points... [2.042s] Computing alignments... [65.336s] Deallocating buffers... [0.078s] Loading trace points... [0.04s] Sorting trace points... [1.441s] Computing alignments... [60.532s] Deallocating buffers... [0.061s] Loading trace points... [0.063s] Sorting trace points... [1.574s] Computing alignments... [60.739s] Deallocating buffers... [0.08s] Loading trace points... [0.047s] Sorting trace points... [1.492s] Computing alignments... [60.054s] Deallocating buffers... [0.079s] Loading trace points... [0s] Sorting trace points... [1.393s] Computing alignments... [59.123s] Deallocating buffers... [0.069s] Loading trace points... [0s] [1030.33s] Deallocating reference... [0.08s] Loading reference sequences... [254.277s] Masking reference... [30.874s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.082s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.512s] Building query seed array... [2.987s] Computing hash join... [6.173s] Masking low complexity seeds... [0.274s] Searching alignments... [358.211s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.885s] Building query seed array... [3.844s] Computing hash join... [6.016s] Masking low complexity seeds... [0.275s] Searching alignments... [159.807s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.471s] Building query seed array... [3.54s] Computing hash join... [6.049s] Masking low complexity seeds... [0.274s] Searching alignments... [123.457s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.646s] Building query seed array... [3.076s] Computing hash join... [5.793s] Masking low complexity seeds... [0.275s] Searching alignments... [124.985s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.173s] Building query seed array... [2.702s] Computing hash join... [5.972s] Masking low complexity seeds... [0.259s] Searching alignments... [165.921s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.553s] Building query seed array... [3.23s] Computing hash join... [5.48s] Masking low complexity seeds... [0.245s] Searching alignments... [134.747s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.63s] Building query seed array... [3.51s] Computing hash join... [5.254s] Masking low complexity seeds... [0.276s] Searching alignments... [104.328s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.154s] Building query seed array... [2.711s] Computing hash join... [5.496s] Masking low complexity seeds... [0.252s] Searching alignments... [103.175s] Deallocating memory... [0s] Deallocating buffers... [1.563s] Clearing query masking... [1.816s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.236s] Sorting trace points... [1.949s] Computing alignments... [61.272s] Deallocating buffers... [0.109s] Loading trace points... [0.089s] Sorting trace points... [1.797s] Computing alignments... [61.242s] Deallocating buffers... [0.074s] Loading trace points... [0.062s] Sorting trace points... [2.011s] Computing alignments... [59.197s] Deallocating buffers... [0.065s] Loading trace points... [0.062s] Sorting trace points... [1.922s] Computing alignments... [61.586s] Deallocating buffers... [0.079s] Loading trace points... [0.051s] Sorting trace points... [1.488s] Computing alignments... [61.381s] Deallocating buffers... [0.071s] Loading trace points... [0.072s] Sorting trace points... [1.527s] Computing alignments... [64.274s] Deallocating buffers... [0.073s] Loading trace points... [0.041s] Sorting trace points... [1.687s] Computing alignments... [63.065s] Deallocating buffers... [0.077s] Loading trace points... [0.059s] Sorting trace points... [1.957s] Computing alignments... [59.365s] Deallocating buffers... [0.097s] Loading trace points... [0.079s] Sorting trace points... [1.409s] Computing alignments... [59.746s] Deallocating buffers... [0.074s] Loading trace points... [0.098s] Sorting trace points... [1.504s] Computing alignments... [61.675s] Deallocating buffers... [0.06s] Loading trace points... [0.053s] Sorting trace points... [2.014s] Computing alignments... [61.34s] Deallocating buffers... [0.07s] Loading trace points... [0.064s] Sorting trace points... [1.489s] Computing alignments... [63.899s] Deallocating buffers... [0.067s] Loading trace points... [0.045s] Sorting trace points... [1.456s] Computing alignments... [58.801s] Deallocating buffers... [0.071s] Loading trace points... [1.044s] Sorting trace points... [2.02s] Computing alignments... [60.071s] Deallocating buffers... [0.073s] Loading trace points... [0.196s] Sorting trace points... [1.92s] Computing alignments... [58.176s] Deallocating buffers... [0.057s] Loading trace points... [0s] Sorting trace points... [1.601s] Computing alignments... [57.751s] Deallocating buffers... [0.07s] Loading trace points... [0s] [1014.21s] Deallocating reference... [0.089s] Loading reference sequences... [29.183s] Masking reference... [31.353s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.293s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.236s] Building query seed array... [2.883s] Computing hash join... [6.38s] Masking low complexity seeds... [0.268s] Searching alignments... [356.651s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.367s] Building query seed array... [3.716s] Computing hash join... [6.497s] Masking low complexity seeds... [0.274s] Searching alignments... [159.128s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.217s] Building query seed array... [3.721s] Computing hash join... [5.869s] Masking low complexity seeds... [0.268s] Searching alignments... [121.943s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.576s] Building query seed array... [3.097s] Computing hash join... [5.33s] Masking low complexity seeds... [0.278s] Searching alignments... [121.744s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.706s] Building query seed array... [2.724s] Computing hash join... [5.278s] Masking low complexity seeds... [0.283s] Searching alignments... [161.604s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.425s] Building query seed array... [3.168s] Computing hash join... [5.563s] Masking low complexity seeds... [0.25s] Searching alignments... [133.297s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.111s] Building query seed array... [3.328s] Computing hash join... [5.497s] Masking low complexity seeds... [0.276s] Searching alignments... [106.885s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.744s] Building query seed array... [2.663s] Computing hash join... [5.514s] Masking low complexity seeds... [0.243s] Searching alignments... [107.793s] Deallocating memory... [0s] Deallocating buffers... [1.855s] Clearing query masking... [1.759s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.921s] Sorting trace points... [1.966s] Computing alignments... [57.536s] Deallocating buffers... [0.048s] Loading trace points... [0.068s] Sorting trace points... [1.671s] Computing alignments... [58.231s] Deallocating buffers... [0.051s] Loading trace points... [0.077s] Sorting trace points... [1.622s] Computing alignments... [56.443s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [1.534s] Computing alignments... [57.733s] Deallocating buffers... [0.041s] Loading trace points... [0.091s] Sorting trace points... [1.917s] Computing alignments... [57.65s] Deallocating buffers... [0.048s] Loading trace points... [0.105s] Sorting trace points... [1.986s] Computing alignments... [59.542s] Deallocating buffers... [0.117s] Loading trace points... [0.064s] Sorting trace points... [1.499s] Computing alignments... [58.969s] Deallocating buffers... [0.037s] Loading trace points... [0.053s] Sorting trace points... [1.976s] Computing alignments... [56.524s] Deallocating buffers... [0.039s] Loading trace points... [0.047s] Sorting trace points... [1.959s] Computing alignments... [56.362s] Deallocating buffers... [0.183s] Loading trace points... [0.046s] Sorting trace points... [1.392s] Computing alignments... [58.065s] Deallocating buffers... [0.029s] Loading trace points... [0.068s] Sorting trace points... [1.408s] Computing alignments... [57.901s] Deallocating buffers... [0.046s] Loading trace points... [0.071s] Sorting trace points... [1.643s] Computing alignments... [60.049s] Deallocating buffers... [0.038s] Loading trace points... [0.082s] Sorting trace points... [1.919s] Computing alignments... [56.052s] Deallocating buffers... [0.031s] Loading trace points... [0.076s] Sorting trace points... [1.972s] Computing alignments... [56.266s] Deallocating buffers... [0.034s] Loading trace points... [0.067s] Sorting trace points... [2.096s] Computing alignments... [56.034s] Deallocating buffers... [0.082s] Loading trace points... [0s] Sorting trace points... [1.727s] Computing alignments... [54.683s] Deallocating buffers... [0.037s] Loading trace points... [0s] [958.295s] Deallocating reference... [0.086s] Loading reference sequences... [23.306s] Masking reference... [25.026s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [27.182s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.769s] Building query seed array... [2.826s] Computing hash join... [4.628s] Masking low complexity seeds... [0.243s] Searching alignments... [285.643s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.531s] Building query seed array... [3.169s] Computing hash join... [4.662s] Masking low complexity seeds... [0.236s] Searching alignments... [128.926s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.05s] Building query seed array... [3.327s] Computing hash join... [5.06s] Masking low complexity seeds... [0.251s] Searching alignments... [99.166s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.187s] Building query seed array... [2.715s] Computing hash join... [4.578s] Masking low complexity seeds... [0.241s] Searching alignments... [98.876s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.072s] Building query seed array... [2.564s] Computing hash join... [4.547s] Masking low complexity seeds... [0.245s] Searching alignments... [128.139s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.699s] Building query seed array... [2.86s] Computing hash join... [4.511s] Masking low complexity seeds... [0.236s] Searching alignments... [106.59s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.227s] Building query seed array... [3.255s] Computing hash join... [4.683s] Masking low complexity seeds... [0.246s] Searching alignments... [84.398s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.925s] Building query seed array... [2.459s] Computing hash join... [4.848s] Masking low complexity seeds... [0.242s] Searching alignments... [83.087s] Deallocating memory... [0s] Deallocating buffers... [0.131s] Clearing query masking... [1.741s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.273s] Sorting trace points... [1.603s] Computing alignments... [45.19s] Deallocating buffers... [0.022s] Loading trace points... [0.045s] Sorting trace points... [1.606s] Computing alignments... [45.46s] Deallocating buffers... [0.038s] Loading trace points... [0.073s] Sorting trace points... [1.302s] Computing alignments... [44.311s] Deallocating buffers... [0.031s] Loading trace points... [0.084s] Sorting trace points... [1.36s] Computing alignments... [45.445s] Deallocating buffers... [0.031s] Loading trace points... [0.067s] Sorting trace points... [1.293s] Computing alignments... [45.293s] Deallocating buffers... [0.033s] Loading trace points... [0.086s] Sorting trace points... [1.565s] Computing alignments... [46.699s] Deallocating buffers... [0.028s] Loading trace points... [0.049s] Sorting trace points... [1.207s] Computing alignments... [47.011s] Deallocating buffers... [0.03s] Loading trace points... [0.08s] Sorting trace points... [1.585s] Computing alignments... [44.631s] Deallocating buffers... [0.033s] Loading trace points... [0.005s] Sorting trace points... [1.452s] Computing alignments... [44.401s] Deallocating buffers... [0.023s] Loading trace points... [0.055s] Sorting trace points... [1.227s] Computing alignments... [45.535s] Deallocating buffers... [0.03s] Loading trace points... [0.037s] Sorting trace points... [1.388s] Computing alignments... [45.695s] Deallocating buffers... [0.031s] Loading trace points... [0.072s] Sorting trace points... [1.201s] Computing alignments... [47.382s] Deallocating buffers... [0.031s] Loading trace points... [0s] Sorting trace points... [1.362s] Computing alignments... [44.105s] Deallocating buffers... [0.028s] Loading trace points... [0.001s] Sorting trace points... [1.206s] Computing alignments... [44.644s] Deallocating buffers... [0.022s] Loading trace points... [0.063s] Sorting trace points... [1.562s] Computing alignments... [44.253s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.473s] Computing alignments... [43.062s] Deallocating buffers... [0.027s] Loading trace points... [0s] [755.093s] Deallocating reference... [0.08s] Loading reference sequences... [0.081s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [4427.93s] [4427.93s] Deallocating queries... [0.082s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.101s] [4.2s] Closing the database... [0s] Cleaning up... [0s] Total time = 39723.8s Reported 3796591911 pairwise alignments, 3796591911 HSPs. 10022751 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH05-29.trimmed.R2.fastq.gz complete: CH05-29.trimmed.R2.blastx.meganized.daa Now MEGANizing CH05-29.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH05-29.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (345.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,955.0s) Total reads: 10,022,751 With hits: 10,022,751 Alignments: 2,704,838,767 Assig. Taxonomy: 7,445,770 Assig. SEED: 87,276 Assig. EGGNOG: 29,725 Assig. GTDB: 511,918 Assig. EC: 359,212 Assig. INTERPRO2GO: 1,834,009 MinSupport set to: 5011 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,630 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (37.4s) Min-supp. changes: 3,826 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.1s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 227 Class. SEED: 481 Class. EGGNOG: 1,623 Class. GTDB: 44 Class. EC: 2,383 Class. INTERPRO2GO: 8,720 Total time: 6,358s Peak memory: 38 of 195.3G MEGANization of CH05-29.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R1.fastq.gz... 56df3baea4d0e9042b150f9e625f35ee /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.323s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.89s] Opening the output file... [0s] Loading query sequences... [105.994s] Masking queries... [31.802s] Algorithm: Double-indexed Building query histograms... [22.601s] Loading reference sequences... [30.991s] Masking reference... [32.003s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.09s] Allocating buffers... [0.002s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.14s] Building query seed array... [2.601s] Computing hash join... [5.842s] Masking low complexity seeds... [0.316s] Searching alignments... [423.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.296s] Building query seed array... [3.333s] Computing hash join... [5.818s] Masking low complexity seeds... [0.311s] Searching alignments... [178.262s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.657s] Building query seed array... [3.117s] Computing hash join... [5.761s] Masking low complexity seeds... [0.369s] Searching alignments... [137.636s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.224s] Building query seed array... [2.737s] Computing hash join... [5.731s] Masking low complexity seeds... [0.317s] Searching alignments... [135.885s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.056s] Building query seed array... [2.457s] Computing hash join... [5.703s] Masking low complexity seeds... [0.364s] Searching alignments... [192.185s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.296s] Building query seed array... [2.743s] Computing hash join... [5.25s] Masking low complexity seeds... [0.303s] Searching alignments... [153.405s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.303s] Building query seed array... [2.819s] Computing hash join... [5.687s] Masking low complexity seeds... [0.371s] Searching alignments... [116.154s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.185s] Building query seed array... [2.422s] Computing hash join... [5.685s] Masking low complexity seeds... [0.306s] Searching alignments... [119.738s] Deallocating memory... [0s] Deallocating buffers... [0.516s] Clearing query masking... [1.752s] Opening temporary output file... [0.419s] Computing alignments... Loading trace points... [9.934s] Sorting trace points... [1.955s] Computing alignments... [48.59s] Deallocating buffers... [0.026s] Loading trace points... [0.066s] Sorting trace points... [1.736s] Computing alignments... [49.012s] Deallocating buffers... [0.023s] Loading trace points... [0.058s] Sorting trace points... [1.87s] Computing alignments... [49.051s] Deallocating buffers... [0.033s] Loading trace points... [0.034s] Sorting trace points... [2.006s] Computing alignments... [52.657s] Deallocating buffers... [0.055s] Loading trace points... [0.001s] Sorting trace points... [1.885s] Computing alignments... [50.153s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.835s] Computing alignments... [49.511s] Deallocating buffers... [0.027s] Loading trace points... [0.047s] Sorting trace points... [1.822s] Computing alignments... [48.909s] Deallocating buffers... [0.023s] Loading trace points... [0.049s] Sorting trace points... [1.431s] Computing alignments... [51.664s] Deallocating buffers... [0.026s] Loading trace points... [0.056s] Sorting trace points... [1.395s] Computing alignments... [49.63s] Deallocating buffers... [0.025s] Loading trace points... [0.039s] Sorting trace points... [1.333s] Computing alignments... [50.011s] Deallocating buffers... [0.038s] Loading trace points... [0.06s] Sorting trace points... [1.912s] Computing alignments... [51.239s] Deallocating buffers... [0.034s] Loading trace points... [0.077s] Sorting trace points... [1.462s] Computing alignments... [51.794s] Deallocating buffers... [0.026s] Loading trace points... [0.058s] Sorting trace points... [1.805s] Computing alignments... [49.533s] Deallocating buffers... [0.022s] Loading trace points... [0.063s] Sorting trace points... [1.878s] Computing alignments... [50.527s] Deallocating buffers... [0.023s] Loading trace points... [0.06s] Sorting trace points... [1.956s] Computing alignments... [49.919s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.815s] Computing alignments... [50.427s] Deallocating buffers... [0.023s] Loading trace points... [0s] [841.907s] Deallocating reference... [0.056s] Loading reference sequences... [29.064s] Masking reference... [30.925s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.944s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.282s] Building query seed array... [2.589s] Computing hash join... [5.869s] Masking low complexity seeds... [0.317s] Searching alignments... [414.787s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.323s] Building query seed array... [3.595s] Computing hash join... [5.876s] Masking low complexity seeds... [0.319s] Searching alignments... [173.588s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.585s] Building query seed array... [3.118s] Computing hash join... [5.976s] Masking low complexity seeds... [0.33s] Searching alignments... [135.767s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.059s] Building query seed array... [2.946s] Computing hash join... [5.357s] Masking low complexity seeds... [0.31s] Searching alignments... [132.438s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.133s] Building query seed array... [2.586s] Computing hash join... [5.212s] Masking low complexity seeds... [0.3s] Searching alignments... [187.316s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.315s] Building query seed array... [2.804s] Computing hash join... [5.702s] Masking low complexity seeds... [0.315s] Searching alignments... [151.977s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.196s] Building query seed array... [3.055s] Computing hash join... [5.76s] Masking low complexity seeds... [0.316s] Searching alignments... [114.565s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.205s] Building query seed array... [2.616s] Computing hash join... [5.418s] Masking low complexity seeds... [0.305s] Searching alignments... [116.959s] Deallocating memory... [0s] Deallocating buffers... [0.832s] Clearing query masking... [1.681s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.811s] Sorting trace points... [1.91s] Computing alignments... [52.11s] Deallocating buffers... [0.033s] Loading trace points... [0.056s] Sorting trace points... [1.906s] Computing alignments... [51.06s] Deallocating buffers... [0.106s] Loading trace points... [0.055s] Sorting trace points... [1.673s] Computing alignments... [52.114s] Deallocating buffers... [0.026s] Loading trace points... [0.081s] Sorting trace points... [1.959s] Computing alignments... [56.749s] Deallocating buffers... [0.042s] Loading trace points... [0.069s] Sorting trace points... [1.917s] Computing alignments... [53.467s] Deallocating buffers... [0.046s] Loading trace points... [0.097s] Sorting trace points... [1.559s] Computing alignments... [52.073s] Deallocating buffers... [0.031s] Loading trace points... [0.05s] Sorting trace points... [1.934s] Computing alignments... [52.8s] Deallocating buffers... [0.045s] Loading trace points... [0.084s] Sorting trace points... [1.554s] Computing alignments... [54.997s] Deallocating buffers... [0.029s] Loading trace points... [0.077s] Sorting trace points... [1.958s] Computing alignments... [53.13s] Deallocating buffers... [0.03s] Loading trace points... [0.061s] Sorting trace points... [1.473s] Computing alignments... [52.695s] Deallocating buffers... [0.038s] Loading trace points... [0.001s] Sorting trace points... [1.85s] Computing alignments... [54.324s] Deallocating buffers... [0.042s] Loading trace points... [0.06s] Sorting trace points... [1.995s] Computing alignments... [55.046s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.832s] Computing alignments... [53.012s] Deallocating buffers... [0.09s] Loading trace points... [0.087s] Sorting trace points... [1.801s] Computing alignments... [53.463s] Deallocating buffers... [0.04s] Loading trace points... [0.098s] Sorting trace points... [1.688s] Computing alignments... [52.871s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.33s] Computing alignments... [53.924s] Deallocating buffers... [0.026s] Loading trace points... [0s] [893.767s] Deallocating reference... [0.062s] Loading reference sequences... [30.444s] Masking reference... [31.542s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.979s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.248s] Building query seed array... [2.717s] Computing hash join... [5.939s] Masking low complexity seeds... [0.314s] Searching alignments... [411.445s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.317s] Building query seed array... [3.549s] Computing hash join... [5.992s] Masking low complexity seeds... [0.339s] Searching alignments... [175.448s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.598s] Building query seed array... [3.199s] Computing hash join... [5.314s] Masking low complexity seeds... [0.304s] Searching alignments... [134.67s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.195s] Building query seed array... [2.804s] Computing hash join... [5.301s] Masking low complexity seeds... [0.317s] Searching alignments... [135.659s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.484s] Building query seed array... [2.517s] Computing hash join... [5.236s] Masking low complexity seeds... [0.307s] Searching alignments... [189.42s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.256s] Building query seed array... [2.798s] Computing hash join... [5.292s] Masking low complexity seeds... [0.313s] Searching alignments... [153.341s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.342s] Building query seed array... [3.062s] Computing hash join... [5.652s] Masking low complexity seeds... [0.636s] Searching alignments... [114.411s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.123s] Building query seed array... [2.57s] Computing hash join... [5.733s] Masking low complexity seeds... [0.317s] Searching alignments... [117.933s] Deallocating memory... [0s] Deallocating buffers... [0.936s] Clearing query masking... [1.668s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.797s] Sorting trace points... [1.976s] Computing alignments... [50.876s] Deallocating buffers... [0.032s] Loading trace points... [0.053s] Sorting trace points... [1.563s] Computing alignments... [49.492s] Deallocating buffers... [0.024s] Loading trace points... [0.048s] Sorting trace points... [1.83s] Computing alignments... [50.985s] Deallocating buffers... [0.033s] Loading trace points... [0.594s] Sorting trace points... [1.987s] Computing alignments... [54.95s] Deallocating buffers... [0.035s] Loading trace points... [0.532s] Sorting trace points... [1.798s] Computing alignments... [52.099s] Deallocating buffers... [0.039s] Loading trace points... [0.081s] Sorting trace points... [1.854s] Computing alignments... [50.704s] Deallocating buffers... [0.032s] Loading trace points... [0.087s] Sorting trace points... [1.851s] Computing alignments... [51.54s] Deallocating buffers... [0.035s] Loading trace points... [0.073s] Sorting trace points... [1.55s] Computing alignments... [53.681s] Deallocating buffers... [0.025s] Loading trace points... [0.044s] Sorting trace points... [1.858s] Computing alignments... [52.764s] Deallocating buffers... [0.039s] Loading trace points... [0.102s] Sorting trace points... [1.586s] Computing alignments... [51.395s] Deallocating buffers... [0.035s] Loading trace points... [0.075s] Sorting trace points... [1.61s] Computing alignments... [52.61s] Deallocating buffers... [0.024s] Loading trace points... [0.036s] Sorting trace points... [1.881s] Computing alignments... [53.399s] Deallocating buffers... [0.028s] Loading trace points... [0.044s] Sorting trace points... [1.33s] Computing alignments... [52.307s] Deallocating buffers... [0.036s] Loading trace points... [0.059s] Sorting trace points... [1.928s] Computing alignments... [52.665s] Deallocating buffers... [0.033s] Loading trace points... [0.769s] Sorting trace points... [1.943s] Computing alignments... [51.488s] Deallocating buffers... [0.04s] Loading trace points... [0s] Sorting trace points... [1.755s] Computing alignments... [52.98s] Deallocating buffers... [0.035s] Loading trace points... [0s] [875.291s] Deallocating reference... [0.086s] Loading reference sequences... [33.566s] Masking reference... [31.14s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.104s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.228s] Building query seed array... [2.598s] Computing hash join... [5.828s] Masking low complexity seeds... [0.317s] Searching alignments... [419.427s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.558s] Building query seed array... [3.371s] Computing hash join... [5.833s] Masking low complexity seeds... [0.321s] Searching alignments... [176.977s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.903s] Building query seed array... [3.279s] Computing hash join... [5.657s] Masking low complexity seeds... [0.323s] Searching alignments... [136.997s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.445s] Building query seed array... [2.884s] Computing hash join... [5.671s] Masking low complexity seeds... [0.349s] Searching alignments... [132.761s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.15s] Building query seed array... [2.637s] Computing hash join... [5.622s] Masking low complexity seeds... [0.297s] Searching alignments... [189.766s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.628s] Building query seed array... [2.816s] Computing hash join... [5.879s] Masking low complexity seeds... [0.332s] Searching alignments... [155.884s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.581s] Building query seed array... [2.933s] Computing hash join... [5.572s] Masking low complexity seeds... [0.301s] Searching alignments... [115.497s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.427s] Building query seed array... [2.529s] Computing hash join... [5.393s] Masking low complexity seeds... [0.296s] Searching alignments... [120.256s] Deallocating memory... [0s] Deallocating buffers... [0.993s] Clearing query masking... [1.619s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.797s] Sorting trace points... [1.986s] Computing alignments... [53.517s] Deallocating buffers... [0.036s] Loading trace points... [0.072s] Sorting trace points... [1.379s] Computing alignments... [52.31s] Deallocating buffers... [0.024s] Loading trace points... [0.074s] Sorting trace points... [1.307s] Computing alignments... [53.975s] Deallocating buffers... [0.036s] Loading trace points... [0.073s] Sorting trace points... [1.939s] Computing alignments... [58.733s] Deallocating buffers... [0.036s] Loading trace points... [0.105s] Sorting trace points... [1.877s] Computing alignments... [55.085s] Deallocating buffers... [0.042s] Loading trace points... [0.043s] Sorting trace points... [1.414s] Computing alignments... [53.492s] Deallocating buffers... [0.037s] Loading trace points... [0.054s] Sorting trace points... [1.898s] Computing alignments... [54.429s] Deallocating buffers... [0.03s] Loading trace points... [0.094s] Sorting trace points... [2.168s] Computing alignments... [56.66s] Deallocating buffers... [0.106s] Loading trace points... [0.06s] Sorting trace points... [1.393s] Computing alignments... [55.106s] Deallocating buffers... [0.038s] Loading trace points... [0.002s] Sorting trace points... [1.878s] Computing alignments... [54.406s] Deallocating buffers... [0.034s] Loading trace points... [0.05s] Sorting trace points... [1.956s] Computing alignments... [55.582s] Deallocating buffers... [0.036s] Loading trace points... [0.067s] Sorting trace points... [1.482s] Computing alignments... [56.37s] Deallocating buffers... [0.036s] Loading trace points... [0.067s] Sorting trace points... [1.494s] Computing alignments... [54.958s] Deallocating buffers... [0.038s] Loading trace points... [0.045s] Sorting trace points... [1.433s] Computing alignments... [55.496s] Deallocating buffers... [0.037s] Loading trace points... [0.056s] Sorting trace points... [1.614s] Computing alignments... [54.313s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.932s] Computing alignments... [55.82s] Deallocating buffers... [0.024s] Loading trace points... [0s] [918.787s] Deallocating reference... [0.062s] Loading reference sequences... [250.013s] Masking reference... [30.873s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.262s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.261s] Building query seed array... [2.583s] Computing hash join... [6.285s] Masking low complexity seeds... [0.323s] Searching alignments... [415.335s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.112s] Building query seed array... [3.273s] Computing hash join... [6.108s] Masking low complexity seeds... [0.33s] Searching alignments... [177.853s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.279s] Building query seed array... [3.21s] Computing hash join... [6.14s] Masking low complexity seeds... [0.333s] Searching alignments... [135.468s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.348s] Building query seed array... [2.899s] Computing hash join... [5.837s] Masking low complexity seeds... [0.331s] Searching alignments... [136.987s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.527s] Building query seed array... [2.558s] Computing hash join... [5.205s] Masking low complexity seeds... [0.34s] Searching alignments... [186.895s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.654s] Building query seed array... [2.81s] Computing hash join... [5.782s] Masking low complexity seeds... [0.311s] Searching alignments... [153.599s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.146s] Building query seed array... [3.135s] Computing hash join... [5.57s] Masking low complexity seeds... [0.372s] Searching alignments... [117.326s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.523s] Building query seed array... [2.634s] Computing hash join... [5.406s] Masking low complexity seeds... [0.297s] Searching alignments... [119.731s] Deallocating memory... [0s] Deallocating buffers... [1.631s] Clearing query masking... [1.624s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.994s] Sorting trace points... [1.804s] Computing alignments... [57.099s] Deallocating buffers... [0.042s] Loading trace points... [0.109s] Sorting trace points... [1.605s] Computing alignments... [54.473s] Deallocating buffers... [0.046s] Loading trace points... [0.054s] Sorting trace points... [1.835s] Computing alignments... [56.282s] Deallocating buffers... [0.032s] Loading trace points... [0.083s] Sorting trace points... [1.55s] Computing alignments... [60.693s] Deallocating buffers... [0.046s] Loading trace points... [0.064s] Sorting trace points... [1.855s] Computing alignments... [57.818s] Deallocating buffers... [0.04s] Loading trace points... [0.058s] Sorting trace points... [1.617s] Computing alignments... [55.94s] Deallocating buffers... [0.047s] Loading trace points... [0.045s] Sorting trace points... [1.844s] Computing alignments... [56.925s] Deallocating buffers... [0.046s] Loading trace points... [0.051s] Sorting trace points... [1.926s] Computing alignments... [59.54s] Deallocating buffers... [0.05s] Loading trace points... [0.079s] Sorting trace points... [1.91s] Computing alignments... [58.549s] Deallocating buffers... [0.05s] Loading trace points... [0.086s] Sorting trace points... [1.868s] Computing alignments... [56.906s] Deallocating buffers... [0.045s] Loading trace points... [0.052s] Sorting trace points... [1.905s] Computing alignments... [58.711s] Deallocating buffers... [0.042s] Loading trace points... [0.065s] Sorting trace points... [1.812s] Computing alignments... [59.256s] Deallocating buffers... [0.059s] Loading trace points... [0.071s] Sorting trace points... [2.031s] Computing alignments... [58.822s] Deallocating buffers... [0.242s] Loading trace points... [0.002s] Sorting trace points... [1.913s] Computing alignments... [58.464s] Deallocating buffers... [0.056s] Loading trace points... [0.055s] Sorting trace points... [1.507s] Computing alignments... [57.031s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [1.597s] Computing alignments... [58.58s] Deallocating buffers... [0.064s] Loading trace points... [0s] [965.616s] Deallocating reference... [0.083s] Loading reference sequences... [270.455s] Masking reference... [31.062s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.742s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.252s] Building query seed array... [2.601s] Computing hash join... [6.235s] Masking low complexity seeds... [0.318s] Searching alignments... [416.861s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.789s] Building query seed array... [3.381s] Computing hash join... [5.493s] Masking low complexity seeds... [0.32s] Searching alignments... [175.688s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.093s] Building query seed array... [3.312s] Computing hash join... [6.171s] Masking low complexity seeds... [0.333s] Searching alignments... [137.379s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.601s] Building query seed array... [2.911s] Computing hash join... [5.514s] Masking low complexity seeds... [0.308s] Searching alignments... [133.572s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.627s] Building query seed array... [2.549s] Computing hash join... [5.528s] Masking low complexity seeds... [0.294s] Searching alignments... [191.336s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.664s] Building query seed array... [2.874s] Computing hash join... [5.152s] Masking low complexity seeds... [0.314s] Searching alignments... [150.238s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.85s] Building query seed array... [3.155s] Computing hash join... [5.249s] Masking low complexity seeds... [0.3s] Searching alignments... [114.422s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.418s] Building query seed array... [2.626s] Computing hash join... [5.245s] Masking low complexity seeds... [0.305s] Searching alignments... [118.786s] Deallocating memory... [0s] Deallocating buffers... [1.408s] Clearing query masking... [1.858s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.818s] Sorting trace points... [1.889s] Computing alignments... [47.415s] Deallocating buffers... [0.039s] Loading trace points... [0.061s] Sorting trace points... [1.913s] Computing alignments... [47.513s] Deallocating buffers... [0.022s] Loading trace points... [0.047s] Sorting trace points... [1.66s] Computing alignments... [47.472s] Deallocating buffers... [0.027s] Loading trace points... [0.051s] Sorting trace points... [2.002s] Computing alignments... [51.857s] Deallocating buffers... [0.028s] Loading trace points... [0.079s] Sorting trace points... [1.834s] Computing alignments... [49.228s] Deallocating buffers... [0.028s] Loading trace points... [0.07s] Sorting trace points... [1.83s] Computing alignments... [47.994s] Deallocating buffers... [0.033s] Loading trace points... [0.002s] Sorting trace points... [1.877s] Computing alignments... [47.747s] Deallocating buffers... [0.027s] Loading trace points... [0.046s] Sorting trace points... [1.948s] Computing alignments... [50.206s] Deallocating buffers... [0.023s] Loading trace points... [0.054s] Sorting trace points... [1.805s] Computing alignments... [48.374s] Deallocating buffers... [0.022s] Loading trace points... [0.075s] Sorting trace points... [1.713s] Computing alignments... [48.966s] Deallocating buffers... [0.035s] Loading trace points... [0.092s] Sorting trace points... [1.972s] Computing alignments... [50.274s] Deallocating buffers... [0.039s] Loading trace points... [0.087s] Sorting trace points... [2.039s] Computing alignments... [50.453s] Deallocating buffers... [0.098s] Loading trace points... [0.05s] Sorting trace points... [1.99s] Computing alignments... [48.544s] Deallocating buffers... [0.022s] Loading trace points... [0.073s] Sorting trace points... [1.832s] Computing alignments... [49.689s] Deallocating buffers... [0.028s] Loading trace points... [0.065s] Sorting trace points... [1.869s] Computing alignments... [48.622s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.862s] Computing alignments... [49.674s] Deallocating buffers... [0.028s] Loading trace points... [0s] [825.395s] Deallocating reference... [0.059s] Loading reference sequences... [29.119s] Masking reference... [30.925s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.078s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.175s] Building query seed array... [2.576s] Computing hash join... [6.077s] Masking low complexity seeds... [0.316s] Searching alignments... [420.259s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.782s] Building query seed array... [3.371s] Computing hash join... [5.863s] Masking low complexity seeds... [0.301s] Searching alignments... [174.994s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.581s] Building query seed array... [3.319s] Computing hash join... [6.169s] Masking low complexity seeds... [0.317s] Searching alignments... [136.788s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.357s] Building query seed array... [2.692s] Computing hash join... [5.939s] Masking low complexity seeds... [0.335s] Searching alignments... [134.009s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.171s] Building query seed array... [2.512s] Computing hash join... [5.624s] Masking low complexity seeds... [0.338s] Searching alignments... [187.049s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.942s] Building query seed array... [2.891s] Computing hash join... [5.345s] Masking low complexity seeds... [0.317s] Searching alignments... [156.43s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.784s] Building query seed array... [2.884s] Computing hash join... [5.632s] Masking low complexity seeds... [0.29s] Searching alignments... [114.088s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.87s] Building query seed array... [2.556s] Computing hash join... [5.328s] Masking low complexity seeds... [0.314s] Searching alignments... [120.368s] Deallocating memory... [0s] Deallocating buffers... [1.43s] Clearing query masking... [1.612s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.746s] Sorting trace points... [1.937s] Computing alignments... [47.768s] Deallocating buffers... [0.022s] Loading trace points... [0.045s] Sorting trace points... [1.931s] Computing alignments... [47.828s] Deallocating buffers... [0.115s] Loading trace points... [0.056s] Sorting trace points... [1.448s] Computing alignments... [47.769s] Deallocating buffers... [0.035s] Loading trace points... [0.061s] Sorting trace points... [1.417s] Computing alignments... [51.931s] Deallocating buffers... [0.039s] Loading trace points... [0.134s] Sorting trace points... [1.364s] Computing alignments... [49.71s] Deallocating buffers... [0.025s] Loading trace points... [0.07s] Sorting trace points... [1.622s] Computing alignments... [48.545s] Deallocating buffers... [0.023s] Loading trace points... [0.07s] Sorting trace points... [1.419s] Computing alignments... [48.114s] Deallocating buffers... [0.025s] Loading trace points... [0.063s] Sorting trace points... [2.004s] Computing alignments... [50.674s] Deallocating buffers... [0.028s] Loading trace points... [0.044s] Sorting trace points... [1.972s] Computing alignments... [48.237s] Deallocating buffers... [0.106s] Loading trace points... [0.062s] Sorting trace points... [1.784s] Computing alignments... [49.122s] Deallocating buffers... [0.034s] Loading trace points... [0.114s] Sorting trace points... [1.646s] Computing alignments... [50.25s] Deallocating buffers... [0.037s] Loading trace points... [0.067s] Sorting trace points... [1.698s] Computing alignments... [50.982s] Deallocating buffers... [0.025s] Loading trace points... [0.071s] Sorting trace points... [1.393s] Computing alignments... [48.451s] Deallocating buffers... [0.025s] Loading trace points... [0.068s] Sorting trace points... [1.564s] Computing alignments... [49.609s] Deallocating buffers... [0.024s] Loading trace points... [0.099s] Sorting trace points... [1.898s] Computing alignments... [48.716s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [2.001s] Computing alignments... [49.601s] Deallocating buffers... [0.154s] Loading trace points... [0s] [826.053s] Deallocating reference... [0.06s] Loading reference sequences... [32.185s] Masking reference... [30.854s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [33.492s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.273s] Building query seed array... [2.603s] Computing hash join... [5.989s] Masking low complexity seeds... [0.316s] Searching alignments... [414.044s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.951s] Building query seed array... [3.236s] Computing hash join... [6.209s] Masking low complexity seeds... [0.323s] Searching alignments... [173.974s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.98s] Building query seed array... [3.188s] Computing hash join... [6.34s] Masking low complexity seeds... [0.329s] Searching alignments... [134.822s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.872s] Building query seed array... [2.658s] Computing hash join... [6.439s] Masking low complexity seeds... [0.33s] Searching alignments... [132.997s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.223s] Building query seed array... [2.498s] Computing hash join... [6.213s] Masking low complexity seeds... [0.307s] Searching alignments... [192.685s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.743s] Building query seed array... [2.855s] Computing hash join... [6.206s] Masking low complexity seeds... [0.304s] Searching alignments... [151.893s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.811s] Building query seed array... [2.851s] Computing hash join... [6.135s] Masking low complexity seeds... [0.322s] Searching alignments... [113.621s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.719s] Building query seed array... [2.424s] Computing hash join... [6.367s] Masking low complexity seeds... [0.301s] Searching alignments... [119.79s] Deallocating memory... [0s] Deallocating buffers... [0.482s] Clearing query masking... [1.769s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.918s] Sorting trace points... [1.914s] Computing alignments... [46.41s] Deallocating buffers... [0.023s] Loading trace points... [0.048s] Sorting trace points... [1.318s] Computing alignments... [46.877s] Deallocating buffers... [0.035s] Loading trace points... [0.074s] Sorting trace points... [1.84s] Computing alignments... [46.944s] Deallocating buffers... [0.032s] Loading trace points... [0.079s] Sorting trace points... [1.828s] Computing alignments... [50.444s] Deallocating buffers... [0.028s] Loading trace points... [0.061s] Sorting trace points... [1.804s] Computing alignments... [48.123s] Deallocating buffers... [0.022s] Loading trace points... [0.074s] Sorting trace points... [1.381s] Computing alignments... [47.164s] Deallocating buffers... [0.023s] Loading trace points... [0.091s] Sorting trace points... [1.817s] Computing alignments... [46.734s] Deallocating buffers... [0.022s] Loading trace points... [0.047s] Sorting trace points... [2.11s] Computing alignments... [49.246s] Deallocating buffers... [0.159s] Loading trace points... [0.058s] Sorting trace points... [1.891s] Computing alignments... [47.471s] Deallocating buffers... [0.022s] Loading trace points... [0.081s] Sorting trace points... [1.957s] Computing alignments... [47.587s] Deallocating buffers... [0.039s] Loading trace points... [0.302s] Sorting trace points... [1.825s] Computing alignments... [48.542s] Deallocating buffers... [0.034s] Loading trace points... [0.002s] Sorting trace points... [1.379s] Computing alignments... [49.238s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.804s] Computing alignments... [47.246s] Deallocating buffers... [0.034s] Loading trace points... [0.069s] Sorting trace points... [1.786s] Computing alignments... [48.029s] Deallocating buffers... [0.028s] Loading trace points... [0.052s] Sorting trace points... [1.837s] Computing alignments... [47.472s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [1.678s] Computing alignments... [48.04s] Deallocating buffers... [0.03s] Loading trace points... [0s] [806.428s] Deallocating reference... [0.058s] Loading reference sequences... [28.975s] Masking reference... [30.875s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.713s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.206s] Building query seed array... [2.583s] Computing hash join... [6.121s] Masking low complexity seeds... [0.32s] Searching alignments... [418.423s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.917s] Building query seed array... [3.19s] Computing hash join... [5.658s] Masking low complexity seeds... [0.309s] Searching alignments... [175.222s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.51s] Building query seed array... [3.367s] Computing hash join... [5.834s] Masking low complexity seeds... [0.309s] Searching alignments... [136.462s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.211s] Building query seed array... [2.782s] Computing hash join... [6.076s] Masking low complexity seeds... [0.324s] Searching alignments... [135.36s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.203s] Building query seed array... [2.581s] Computing hash join... [5.558s] Masking low complexity seeds... [0.314s] Searching alignments... [190.77s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.182s] Building query seed array... [2.762s] Computing hash join... [5.636s] Masking low complexity seeds... [0.294s] Searching alignments... [155.999s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.777s] Building query seed array... [3.073s] Computing hash join... [5.925s] Masking low complexity seeds... [0.308s] Searching alignments... [114.9s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.436s] Building query seed array... [2.51s] Computing hash join... [5.757s] Masking low complexity seeds... [0.312s] Searching alignments... [119.837s] Deallocating memory... [0s] Deallocating buffers... [1.047s] Clearing query masking... [1.615s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.861s] Sorting trace points... [1.923s] Computing alignments... [55.261s] Deallocating buffers... [0.062s] Loading trace points... [0.098s] Sorting trace points... [1.801s] Computing alignments... [52.608s] Deallocating buffers... [0.117s] Loading trace points... [0.059s] Sorting trace points... [1.351s] Computing alignments... [54.834s] Deallocating buffers... [0.057s] Loading trace points... [0.055s] Sorting trace points... [2.003s] Computing alignments... [59.037s] Deallocating buffers... [0.07s] Loading trace points... [0.057s] Sorting trace points... [1.861s] Computing alignments... [56.078s] Deallocating buffers... [0.06s] Loading trace points... [0.079s] Sorting trace points... [1.858s] Computing alignments... [54.326s] Deallocating buffers... [0.052s] Loading trace points... [0.04s] Sorting trace points... [1.748s] Computing alignments... [55.426s] Deallocating buffers... [0.063s] Loading trace points... [0.047s] Sorting trace points... [1.973s] Computing alignments... [58.112s] Deallocating buffers... [0.055s] Loading trace points... [0.07s] Sorting trace points... [1.424s] Computing alignments... [57.252s] Deallocating buffers... [0.063s] Loading trace points... [0.069s] Sorting trace points... [1.624s] Computing alignments... [55.036s] Deallocating buffers... [0.05s] Loading trace points... [0.079s] Sorting trace points... [1.724s] Computing alignments... [56.711s] Deallocating buffers... [0.056s] Loading trace points... [0.048s] Sorting trace points... [1.913s] Computing alignments... [57.339s] Deallocating buffers... [0.047s] Loading trace points... [0.059s] Sorting trace points... [1.55s] Computing alignments... [56.556s] Deallocating buffers... [0.061s] Loading trace points... [0.069s] Sorting trace points... [1.511s] Computing alignments... [56.828s] Deallocating buffers... [0.052s] Loading trace points... [0.071s] Sorting trace points... [1.382s] Computing alignments... [55.24s] Deallocating buffers... [0.065s] Loading trace points... [0s] Sorting trace points... [1.664s] Computing alignments... [56.755s] Deallocating buffers... [0.064s] Loading trace points... [0s] [936.566s] Deallocating reference... [0.094s] Loading reference sequences... [29.048s] Masking reference... [30.876s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.987s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.454s] Building query seed array... [2.608s] Computing hash join... [6.452s] Masking low complexity seeds... [0.317s] Searching alignments... [417.792s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.954s] Building query seed array... [3.488s] Computing hash join... [5.794s] Masking low complexity seeds... [0.334s] Searching alignments... [176.133s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.48s] Building query seed array... [3.261s] Computing hash join... [5.59s] Masking low complexity seeds... [0.326s] Searching alignments... [137.8s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.451s] Building query seed array... [2.787s] Computing hash join... [5.417s] Masking low complexity seeds... [0.313s] Searching alignments... [132.169s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.752s] Building query seed array... [2.568s] Computing hash join... [5.306s] Masking low complexity seeds... [0.309s] Searching alignments... [187.686s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.661s] Building query seed array... [2.857s] Computing hash join... [5.63s] Masking low complexity seeds... [0.309s] Searching alignments... [152.417s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.784s] Building query seed array... [3.001s] Computing hash join... [5.61s] Masking low complexity seeds... [0.302s] Searching alignments... [114.888s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.222s] Building query seed array... [2.514s] Computing hash join... [5.907s] Masking low complexity seeds... [0.326s] Searching alignments... [118.849s] Deallocating memory... [0s] Deallocating buffers... [1.567s] Clearing query masking... [1.685s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.675s] Sorting trace points... [1.44s] Computing alignments... [45.253s] Deallocating buffers... [0.024s] Loading trace points... [0.058s] Sorting trace points... [1.847s] Computing alignments... [45.471s] Deallocating buffers... [0.022s] Loading trace points... [0.047s] Sorting trace points... [1.959s] Computing alignments... [45.963s] Deallocating buffers... [0.101s] Loading trace points... [0.05s] Sorting trace points... [1.794s] Computing alignments... [49.571s] Deallocating buffers... [0.028s] Loading trace points... [0.062s] Sorting trace points... [1.835s] Computing alignments... [47.032s] Deallocating buffers... [0.024s] Loading trace points... [0.092s] Sorting trace points... [1.824s] Computing alignments... [46.195s] Deallocating buffers... [0.027s] Loading trace points... [0.002s] Sorting trace points... [1.875s] Computing alignments... [45.655s] Deallocating buffers... [0.041s] Loading trace points... [0.061s] Sorting trace points... [1.702s] Computing alignments... [48.28s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.876s] Computing alignments... [46.424s] Deallocating buffers... [0.022s] Loading trace points... [0.067s] Sorting trace points... [1.901s] Computing alignments... [46.827s] Deallocating buffers... [0.033s] Loading trace points... [0.086s] Sorting trace points... [1.856s] Computing alignments... [47.568s] Deallocating buffers... [0.028s] Loading trace points... [0.048s] Sorting trace points... [1.962s] Computing alignments... [48.538s] Deallocating buffers... [0.026s] Loading trace points... [0.046s] Sorting trace points... [1.973s] Computing alignments... [46.537s] Deallocating buffers... [0.058s] Loading trace points... [0.086s] Sorting trace points... [1.37s] Computing alignments... [47.038s] Deallocating buffers... [0.025s] Loading trace points... [0.076s] Sorting trace points... [1.889s] Computing alignments... [46.608s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.68s] Computing alignments... [47.157s] Deallocating buffers... [0.023s] Loading trace points... [0s] [791.112s] Deallocating reference... [0.057s] Loading reference sequences... [29.053s] Masking reference... [32.163s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.83s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.377s] Building query seed array... [2.584s] Computing hash join... [6.074s] Masking low complexity seeds... [0.338s] Searching alignments... [417.202s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.151s] Building query seed array... [3.297s] Computing hash join... [6.378s] Masking low complexity seeds... [0.324s] Searching alignments... [177.7s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.145s] Building query seed array... [3.193s] Computing hash join... [5.444s] Masking low complexity seeds... [0.325s] Searching alignments... [139.223s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.067s] Building query seed array... [2.706s] Computing hash join... [5.521s] Masking low complexity seeds... [0.309s] Searching alignments... [134.855s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.472s] Building query seed array... [2.451s] Computing hash join... [5.567s] Masking low complexity seeds... [0.328s] Searching alignments... [195.988s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.95s] Building query seed array... [2.8s] Computing hash join... [5.941s] Masking low complexity seeds... [0.31s] Searching alignments... [152.349s] Deallocating memory... [0.006s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.638s] Building query seed array... [2.984s] Computing hash join... [5.522s] Masking low complexity seeds... [0.305s] Searching alignments... [115.348s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.856s] Building query seed array... [2.521s] Computing hash join... [5.336s] Masking low complexity seeds... [0.326s] Searching alignments... [120.384s] Deallocating memory... [0s] Deallocating buffers... [1.409s] Clearing query masking... [1.888s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [9.854s] Sorting trace points... [1.927s] Computing alignments... [55.401s] Deallocating buffers... [0.045s] Loading trace points... [0.112s] Sorting trace points... [1.7s] Computing alignments... [54.404s] Deallocating buffers... [0.028s] Loading trace points... [0.052s] Sorting trace points... [1.384s] Computing alignments... [55.534s] Deallocating buffers... [0.035s] Loading trace points... [0.057s] Sorting trace points... [1.879s] Computing alignments... [60.101s] Deallocating buffers... [0.036s] Loading trace points... [0.088s] Sorting trace points... [1.424s] Computing alignments... [57.554s] Deallocating buffers... [0.035s] Loading trace points... [0.001s] Sorting trace points... [1.842s] Computing alignments... [54.91s] Deallocating buffers... [0.022s] Loading trace points... [0.055s] Sorting trace points... [1.828s] Computing alignments... [56.723s] Deallocating buffers... [0.067s] Loading trace points... [0.06s] Sorting trace points... [1.455s] Computing alignments... [58.885s] Deallocating buffers... [0.037s] Loading trace points... [0.055s] Sorting trace points... [1.488s] Computing alignments... [57.39s] Deallocating buffers... [0.038s] Loading trace points... [0.072s] Sorting trace points... [1.439s] Computing alignments... [56.389s] Deallocating buffers... [0.036s] Loading trace points... [0.044s] Sorting trace points... [1.911s] Computing alignments... [57.507s] Deallocating buffers... [0.041s] Loading trace points... [0.048s] Sorting trace points... [1.849s] Computing alignments... [58.588s] Deallocating buffers... [0.039s] Loading trace points... [0.059s] Sorting trace points... [1.986s] Computing alignments... [57.495s] Deallocating buffers... [0.162s] Loading trace points... [0.069s] Sorting trace points... [1.489s] Computing alignments... [57.548s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.888s] Computing alignments... [56.284s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [1.559s] Computing alignments... [57.762s] Deallocating buffers... [0.036s] Loading trace points... [0s] [950.994s] Deallocating reference... [0.087s] Loading reference sequences... [30.501s] Masking reference... [31.473s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.46s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.522s] Building query seed array... [2.575s] Computing hash join... [5.966s] Masking low complexity seeds... [0.321s] Searching alignments... [412.363s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.876s] Building query seed array... [3.466s] Computing hash join... [6.113s] Masking low complexity seeds... [0.317s] Searching alignments... [175.787s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14s] Building query seed array... [3.358s] Computing hash join... [5.84s] Masking low complexity seeds... [0.323s] Searching alignments... [138.561s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.246s] Building query seed array... [2.811s] Computing hash join... [5.869s] Masking low complexity seeds... [0.324s] Searching alignments... [136.384s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.194s] Building query seed array... [2.639s] Computing hash join... [5.811s] Masking low complexity seeds... [0.331s] Searching alignments... [193.354s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.517s] Building query seed array... [2.867s] Computing hash join... [5.663s] Masking low complexity seeds... [0.327s] Searching alignments... [150.902s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.71s] Building query seed array... [3.011s] Computing hash join... [5.707s] Masking low complexity seeds... [0.303s] Searching alignments... [114.085s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.952s] Building query seed array... [2.589s] Computing hash join... [5.875s] Masking low complexity seeds... [0.297s] Searching alignments... [121.664s] Deallocating memory... [0s] Deallocating buffers... [1.187s] Clearing query masking... [1.638s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.512s] Sorting trace points... [1.872s] Computing alignments... [56.003s] Deallocating buffers... [0.07s] Loading trace points... [0.08s] Sorting trace points... [1.954s] Computing alignments... [53.38s] Deallocating buffers... [0.059s] Loading trace points... [0.069s] Sorting trace points... [1.536s] Computing alignments... [55.141s] Deallocating buffers... [0.066s] Loading trace points... [0.042s] Sorting trace points... [1.823s] Computing alignments... [60.324s] Deallocating buffers... [0.067s] Loading trace points... [0.001s] Sorting trace points... [1.434s] Computing alignments... [56.794s] Deallocating buffers... [0.054s] Loading trace points... [0.047s] Sorting trace points... [1.592s] Computing alignments... [54.882s] Deallocating buffers... [0.06s] Loading trace points... [0.045s] Sorting trace points... [1.808s] Computing alignments... [56.374s] Deallocating buffers... [0.055s] Loading trace points... [0.064s] Sorting trace points... [1.653s] Computing alignments... [58.71s] Deallocating buffers... [0.059s] Loading trace points... [0.059s] Sorting trace points... [1.488s] Computing alignments... [57.085s] Deallocating buffers... [0.061s] Loading trace points... [0.043s] Sorting trace points... [1.455s] Computing alignments... [55.948s] Deallocating buffers... [0.047s] Loading trace points... [0.067s] Sorting trace points... [1.908s] Computing alignments... [57.205s] Deallocating buffers... [0.067s] Loading trace points... [0.072s] Sorting trace points... [1.82s] Computing alignments... [58.489s] Deallocating buffers... [0.047s] Loading trace points... [0.051s] Sorting trace points... [1.593s] Computing alignments... [57.644s] Deallocating buffers... [0.067s] Loading trace points... [0.075s] Sorting trace points... [1.582s] Computing alignments... [57.206s] Deallocating buffers... [0.051s] Loading trace points... [0.064s] Sorting trace points... [1.8s] Computing alignments... [56.077s] Deallocating buffers... [0.064s] Loading trace points... [0s] Sorting trace points... [1.6s] Computing alignments... [58.203s] Deallocating buffers... [0.054s] Loading trace points... [0s] [948.664s] Deallocating reference... [0.072s] Loading reference sequences... [31.193s] Masking reference... [31.35s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.417s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.281s] Building query seed array... [2.577s] Computing hash join... [6.049s] Masking low complexity seeds... [0.324s] Searching alignments... [418.827s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.373s] Building query seed array... [3.425s] Computing hash join... [5.895s] Masking low complexity seeds... [0.335s] Searching alignments... [176.945s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.376s] Building query seed array... [3.195s] Computing hash join... [5.801s] Masking low complexity seeds... [0.325s] Searching alignments... [136.602s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.339s] Building query seed array... [2.851s] Computing hash join... [5.668s] Masking low complexity seeds... [0.31s] Searching alignments... [136.116s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.37s] Building query seed array... [2.543s] Computing hash join... [5.59s] Masking low complexity seeds... [0.347s] Searching alignments... [187.836s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.85s] Building query seed array... [2.769s] Computing hash join... [5.308s] Masking low complexity seeds... [0.304s] Searching alignments... [151.5s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.559s] Building query seed array... [3.033s] Computing hash join... [5.717s] Masking low complexity seeds... [0.314s] Searching alignments... [115.016s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.261s] Building query seed array... [2.567s] Computing hash join... [5.89s] Masking low complexity seeds... [0.308s] Searching alignments... [118.062s] Deallocating memory... [0s] Deallocating buffers... [1.307s] Clearing query masking... [1.704s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.484s] Sorting trace points... [1.877s] Computing alignments... [53.595s] Deallocating buffers... [0.05s] Loading trace points... [0.096s] Sorting trace points... [1.837s] Computing alignments... [52.034s] Deallocating buffers... [0.039s] Loading trace points... [0.067s] Sorting trace points... [1.827s] Computing alignments... [53.657s] Deallocating buffers... [0.038s] Loading trace points... [0.124s] Sorting trace points... [2.025s] Computing alignments... [58.247s] Deallocating buffers... [0.036s] Loading trace points... [0.076s] Sorting trace points... [1.896s] Computing alignments... [55.479s] Deallocating buffers... [0.034s] Loading trace points... [0.096s] Sorting trace points... [1.36s] Computing alignments... [53.274s] Deallocating buffers... [0.035s] Loading trace points... [0.064s] Sorting trace points... [1.698s] Computing alignments... [54.151s] Deallocating buffers... [0.035s] Loading trace points... [0.043s] Sorting trace points... [1.965s] Computing alignments... [57.008s] Deallocating buffers... [0.035s] Loading trace points... [0.046s] Sorting trace points... [1.909s] Computing alignments... [55.537s] Deallocating buffers... [0.035s] Loading trace points... [0.074s] Sorting trace points... [2.132s] Computing alignments... [54.292s] Deallocating buffers... [0.269s] Loading trace points... [0.072s] Sorting trace points... [1.917s] Computing alignments... [55.434s] Deallocating buffers... [0.034s] Loading trace points... [0.061s] Sorting trace points... [1.883s] Computing alignments... [56.428s] Deallocating buffers... [0.023s] Loading trace points... [0.067s] Sorting trace points... [1.938s] Computing alignments... [55.201s] Deallocating buffers... [0.022s] Loading trace points... [0.061s] Sorting trace points... [1.556s] Computing alignments... [55.235s] Deallocating buffers... [0.035s] Loading trace points... [0.115s] Sorting trace points... [1.824s] Computing alignments... [54.106s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.903s] Computing alignments... [56.119s] Deallocating buffers... [0.035s] Loading trace points... [0s] [921.862s] Deallocating reference... [0.083s] Loading reference sequences... [23.557s] Masking reference... [25.093s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [27.233s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.271s] Building query seed array... [2.571s] Computing hash join... [4.774s] Masking low complexity seeds... [0.306s] Searching alignments... [331.356s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.147s] Building query seed array... [3.129s] Computing hash join... [4.553s] Masking low complexity seeds... [0.291s] Searching alignments... [143.425s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.082s] Building query seed array... [3.088s] Computing hash join... [4.543s] Masking low complexity seeds... [0.294s] Searching alignments... [109.839s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.408s] Building query seed array... [2.618s] Computing hash join... [4.445s] Masking low complexity seeds... [0.293s] Searching alignments... [107.755s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.172s] Building query seed array... [2.402s] Computing hash join... [4.248s] Masking low complexity seeds... [0.274s] Searching alignments... [155.961s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.098s] Building query seed array... [2.701s] Computing hash join... [4.251s] Masking low complexity seeds... [0.272s] Searching alignments... [124.274s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.72s] Building query seed array... [2.809s] Computing hash join... [4.308s] Masking low complexity seeds... [0.269s] Searching alignments... [92.559s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.189s] Building query seed array... [2.384s] Computing hash join... [4.316s] Masking low complexity seeds... [0.277s] Searching alignments... [96.442s] Deallocating memory... [0s] Deallocating buffers... [0.368s] Clearing query masking... [1.685s] Opening temporary output file... [0.016s] Computing alignments... Loading trace points... [8.22s] Sorting trace points... [1.529s] Computing alignments... [41.697s] Deallocating buffers... [0.031s] Loading trace points... [0.001s] Sorting trace points... [1.217s] Computing alignments... [40.676s] Deallocating buffers... [0.024s] Loading trace points... [0.077s] Sorting trace points... [1.471s] Computing alignments... [41.757s] Deallocating buffers... [0.027s] Loading trace points... [0.092s] Sorting trace points... [1.337s] Computing alignments... [44.919s] Deallocating buffers... [0.03s] Loading trace points... [0.376s] Sorting trace points... [1.188s] Computing alignments... [42.749s] Deallocating buffers... [0.032s] Loading trace points... [0.05s] Sorting trace points... [1.453s] Computing alignments... [41.482s] Deallocating buffers... [0.027s] Loading trace points... [0.101s] Sorting trace points... [1.498s] Computing alignments... [41.756s] Deallocating buffers... [0.031s] Loading trace points... [0.085s] Sorting trace points... [1.619s] Computing alignments... [43.603s] Deallocating buffers... [0.028s] Loading trace points... [0.074s] Sorting trace points... [1.527s] Computing alignments... [42.679s] Deallocating buffers... [0.031s] Loading trace points... [0.076s] Sorting trace points... [1.553s] Computing alignments... [42.306s] Deallocating buffers... [0.027s] Loading trace points... [0.065s] Sorting trace points... [1.553s] Computing alignments... [43.275s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.583s] Computing alignments... [43.919s] Deallocating buffers... [0.019s] Loading trace points... [0.067s] Sorting trace points... [1.303s] Computing alignments... [42.17s] Deallocating buffers... [0.024s] Loading trace points... [0.038s] Sorting trace points... [1.508s] Computing alignments... [42.813s] Deallocating buffers... [0.027s] Loading trace points... [0.075s] Sorting trace points... [1.146s] Computing alignments... [41.81s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.149s] Computing alignments... [43.105s] Deallocating buffers... [0.03s] Loading trace points... [0s] [713.432s] Deallocating reference... [0.076s] Loading reference sequences... [0.079s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2881.37s] [2881.37s] Deallocating queries... [0.076s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.377s] [4.442s] Closing the database... [0s] Cleaning up... [0s] Total time = 39256.2s Reported 3051931451 pairwise alignments, 3051931451 HSPs. 3547598 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R1.fastq.gz complete: CH07-04.trimmed.R1.blastx.meganized.daa Now MEGANizing CH07-04.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-04.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (417.8s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,206.3s) Total reads: 3,547,598 With hits: 3,547,598 Alignments: 2,376,536,610 Assig. Taxonomy: 2,339,634 Assig. SEED: 98,393 Assig. EGGNOG: 33,593 Assig. GTDB: 232,777 Assig. EC: 365,990 Assig. INTERPRO2GO: 959,455 MinSupport set to: 1773 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 6,500 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.6s) Min-supp. changes: 5,007 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.6s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 204 Class. SEED: 511 Class. EGGNOG: 1,805 Class. GTDB: 67 Class. EC: 2,568 Class. INTERPRO2GO: 8,907 Total time: 5,652s Peak memory: 36.5 of 195.3G MEGANization of CH07-04.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R2.fastq.gz... 8d33239af41e1b99abea99bc637cfeda /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.342s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.788s] Opening the output file... [0s] Loading query sequences... [107.491s] Masking queries... [31.577s] Algorithm: Double-indexed Building query histograms... [24.659s] Loading reference sequences... [31.123s] Masking reference... [32.104s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.108s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.469s] Building query seed array... [2.629s] Computing hash join... [6.408s] Masking low complexity seeds... [0.519s] Searching alignments... [436.485s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.358s] Building query seed array... [3.049s] Computing hash join... [5.761s] Masking low complexity seeds... [0.355s] Searching alignments... [183.769s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.095s] Building query seed array... [3.219s] Computing hash join... [5.992s] Masking low complexity seeds... [0.452s] Searching alignments... [141.425s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.507s] Building query seed array... [2.75s] Computing hash join... [5.83s] Masking low complexity seeds... [0.363s] Searching alignments... [137.423s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.392s] Building query seed array... [2.593s] Computing hash join... [5.573s] Masking low complexity seeds... [0.325s] Searching alignments... [202.654s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.274s] Building query seed array... [2.825s] Computing hash join... [5.968s] Masking low complexity seeds... [0.328s] Searching alignments... [157.733s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.173s] Building query seed array... [2.982s] Computing hash join... [5.658s] Masking low complexity seeds... [0.33s] Searching alignments... [120.571s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.987s] Building query seed array... [2.521s] Computing hash join... [5.738s] Masking low complexity seeds... [0.325s] Searching alignments... [128.718s] Deallocating memory... [0s] Deallocating buffers... [0.689s] Clearing query masking... [1.669s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.062s] Sorting trace points... [2.03s] Computing alignments... [49.779s] Deallocating buffers... [0.025s] Loading trace points... [0.056s] Sorting trace points... [1.813s] Computing alignments... [49.596s] Deallocating buffers... [0.022s] Loading trace points... [0.041s] Sorting trace points... [1.838s] Computing alignments... [49.733s] Deallocating buffers... [0.033s] Loading trace points... [0.087s] Sorting trace points... [2.09s] Computing alignments... [52.814s] Deallocating buffers... [0.041s] Loading trace points... [0.054s] Sorting trace points... [1.843s] Computing alignments... [51.424s] Deallocating buffers... [0.023s] Loading trace points... [0.07s] Sorting trace points... [1.396s] Computing alignments... [50.426s] Deallocating buffers... [0.025s] Loading trace points... [0.79s] Sorting trace points... [1.657s] Computing alignments... [49.688s] Deallocating buffers... [0.024s] Loading trace points... [0.054s] Sorting trace points... [2.135s] Computing alignments... [51.411s] Deallocating buffers... [0.305s] Loading trace points... [0.058s] Sorting trace points... [1.904s] Computing alignments... [50.759s] Deallocating buffers... [0.022s] Loading trace points... [0.074s] Sorting trace points... [1.916s] Computing alignments... [50.672s] Deallocating buffers... [0.028s] Loading trace points... [0.078s] Sorting trace points... [1.911s] Computing alignments... [50.624s] Deallocating buffers... [0.029s] Loading trace points... [0.043s] Sorting trace points... [1.83s] Computing alignments... [50.625s] Deallocating buffers... [0.23s] Loading trace points... [0.065s] Sorting trace points... [1.437s] Computing alignments... [50.059s] Deallocating buffers... [0.025s] Loading trace points... [0.052s] Sorting trace points... [1.885s] Computing alignments... [50.753s] Deallocating buffers... [0.022s] Loading trace points... [0.962s] Sorting trace points... [2.15s] Computing alignments... [49.195s] Deallocating buffers... [0.099s] Loading trace points... [0s] Sorting trace points... [1.808s] Computing alignments... [49.59s] Deallocating buffers... [0.023s] Loading trace points... [0s] [850.424s] Deallocating reference... [0.056s] Loading reference sequences... [36.353s] Masking reference... [30.932s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.748s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.085s] Building query seed array... [2.532s] Computing hash join... [6.524s] Masking low complexity seeds... [0.347s] Searching alignments... [428.978s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.541s] Building query seed array... [3.301s] Computing hash join... [5.521s] Masking low complexity seeds... [0.341s] Searching alignments... [178.646s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.682s] Building query seed array... [3.314s] Computing hash join... [6.344s] Masking low complexity seeds... [0.35s] Searching alignments... [138.04s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.393s] Building query seed array... [2.85s] Computing hash join... [5.986s] Masking low complexity seeds... [0.349s] Searching alignments... [137.748s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.607s] Building query seed array... [2.585s] Computing hash join... [5.748s] Masking low complexity seeds... [0.348s] Searching alignments... [200.318s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.188s] Building query seed array... [2.869s] Computing hash join... [5.941s] Masking low complexity seeds... [0.325s] Searching alignments... [160.42s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.576s] Building query seed array... [2.905s] Computing hash join... [5.317s] Masking low complexity seeds... [0.341s] Searching alignments... [117.304s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.325s] Building query seed array... [2.56s] Computing hash join... [5.962s] Masking low complexity seeds... [0.327s] Searching alignments... [122.46s] Deallocating memory... [0s] Deallocating buffers... [1.411s] Clearing query masking... [1.659s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.349s] Sorting trace points... [1.879s] Computing alignments... [53.798s] Deallocating buffers... [0.023s] Loading trace points... [0.05s] Sorting trace points... [1.853s] Computing alignments... [53.197s] Deallocating buffers... [0.045s] Loading trace points... [0.275s] Sorting trace points... [1.741s] Computing alignments... [53.8s] Deallocating buffers... [0.299s] Loading trace points... [0.058s] Sorting trace points... [1.493s] Computing alignments... [57.131s] Deallocating buffers... [0.038s] Loading trace points... [0.088s] Sorting trace points... [1.972s] Computing alignments... [54.394s] Deallocating buffers... [0.118s] Loading trace points... [0.075s] Sorting trace points... [1.847s] Computing alignments... [54.536s] Deallocating buffers... [0.228s] Loading trace points... [0.088s] Sorting trace points... [1.946s] Computing alignments... [53.694s] Deallocating buffers... [0.022s] Loading trace points... [0.086s] Sorting trace points... [1.933s] Computing alignments... [54.035s] Deallocating buffers... [0.042s] Loading trace points... [0.07s] Sorting trace points... [1.537s] Computing alignments... [55.15s] Deallocating buffers... [0.044s] Loading trace points... [0.064s] Sorting trace points... [1.665s] Computing alignments... [55.538s] Deallocating buffers... [0.027s] Loading trace points... [0.109s] Sorting trace points... [1.514s] Computing alignments... [53.823s] Deallocating buffers... [0.036s] Loading trace points... [0.076s] Sorting trace points... [2.017s] Computing alignments... [54.83s] Deallocating buffers... [0.112s] Loading trace points... [0.051s] Sorting trace points... [1.856s] Computing alignments... [53.066s] Deallocating buffers... [0.034s] Loading trace points... [0.044s] Sorting trace points... [1.918s] Computing alignments... [53.447s] Deallocating buffers... [0.033s] Loading trace points... [0.048s] Sorting trace points... [1.865s] Computing alignments... [52.274s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [2.062s] Computing alignments... [52.586s] Deallocating buffers... [0.339s] Loading trace points... [0s] [907.549s] Deallocating reference... [0.065s] Loading reference sequences... [29.275s] Masking reference... [31.041s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.819s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.359s] Building query seed array... [2.589s] Computing hash join... [6.815s] Masking low complexity seeds... [0.34s] Searching alignments... [432.369s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.495s] Building query seed array... [3.306s] Computing hash join... [5.498s] Masking low complexity seeds... [0.359s] Searching alignments... [180.53s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.435s] Building query seed array... [3.267s] Computing hash join... [6.143s] Masking low complexity seeds... [0.342s] Searching alignments... [140.479s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.399s] Building query seed array... [2.913s] Computing hash join... [6.132s] Masking low complexity seeds... [0.372s] Searching alignments... [135.687s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.054s] Building query seed array... [2.466s] Computing hash join... [6.06s] Masking low complexity seeds... [0.367s] Searching alignments... [197.213s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.047s] Building query seed array... [2.905s] Computing hash join... [5.843s] Masking low complexity seeds... [0.332s] Searching alignments... [160.615s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.381s] Building query seed array... [2.884s] Computing hash join... [5.723s] Masking low complexity seeds... [0.39s] Searching alignments... [118.078s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.813s] Building query seed array... [2.601s] Computing hash join... [6.022s] Masking low complexity seeds... [0.328s] Searching alignments... [125.045s] Deallocating memory... [0s] Deallocating buffers... [1.838s] Clearing query masking... [1.736s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.017s] Sorting trace points... [1.916s] Computing alignments... [52.195s] Deallocating buffers... [0.034s] Loading trace points... [0s] Sorting trace points... [1.725s] Computing alignments... [52.288s] Deallocating buffers... [0.034s] Loading trace points... [0.045s] Sorting trace points... [2.048s] Computing alignments... [52.692s] Deallocating buffers... [0.384s] Loading trace points... [0.049s] Sorting trace points... [2.04s] Computing alignments... [55.67s] Deallocating buffers... [0.041s] Loading trace points... [0.059s] Sorting trace points... [1.491s] Computing alignments... [53.043s] Deallocating buffers... [0.026s] Loading trace points... [0.065s] Sorting trace points... [1.829s] Computing alignments... [53.065s] Deallocating buffers... [0.03s] Loading trace points... [0.079s] Sorting trace points... [1.59s] Computing alignments... [52.492s] Deallocating buffers... [0.034s] Loading trace points... [0.107s] Sorting trace points... [1.902s] Computing alignments... [53.031s] Deallocating buffers... [0.041s] Loading trace points... [0.069s] Sorting trace points... [1.456s] Computing alignments... [54.108s] Deallocating buffers... [0.043s] Loading trace points... [0.055s] Sorting trace points... [1.445s] Computing alignments... [53.802s] Deallocating buffers... [0.026s] Loading trace points... [0.084s] Sorting trace points... [1.557s] Computing alignments... [52.09s] Deallocating buffers... [0.036s] Loading trace points... [0.077s] Sorting trace points... [1.901s] Computing alignments... [52.501s] Deallocating buffers... [0.039s] Loading trace points... [0.002s] Sorting trace points... [1.92s] Computing alignments... [52.153s] Deallocating buffers... [0.033s] Loading trace points... [0.095s] Sorting trace points... [1.827s] Computing alignments... [52.343s] Deallocating buffers... [0.035s] Loading trace points... [0.103s] Sorting trace points... [1.935s] Computing alignments... [50.681s] Deallocating buffers... [0.033s] Loading trace points... [0s] Sorting trace points... [2.13s] Computing alignments... [51.74s] Deallocating buffers... [0.367s] Loading trace points... [0s] [884.881s] Deallocating reference... [0.061s] Loading reference sequences... [29.701s] Masking reference... [30.924s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.041s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.641s] Building query seed array... [2.581s] Computing hash join... [6.984s] Masking low complexity seeds... [0.346s] Searching alignments... [438.115s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.895s] Building query seed array... [3.216s] Computing hash join... [5.716s] Masking low complexity seeds... [0.336s] Searching alignments... [182.264s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.526s] Building query seed array... [3.432s] Computing hash join... [5.846s] Masking low complexity seeds... [0.34s] Searching alignments... [138.424s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.561s] Building query seed array... [2.885s] Computing hash join... [6.293s] Masking low complexity seeds... [0.351s] Searching alignments... [136.381s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.911s] Building query seed array... [2.668s] Computing hash join... [5.859s] Masking low complexity seeds... [0.353s] Searching alignments... [200.195s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.626s] Building query seed array... [2.902s] Computing hash join... [5.739s] Masking low complexity seeds... [0.316s] Searching alignments... [162.267s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.952s] Building query seed array... [2.976s] Computing hash join... [5.988s] Masking low complexity seeds... [0.333s] Searching alignments... [120.35s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.769s] Building query seed array... [2.486s] Computing hash join... [5.955s] Masking low complexity seeds... [0.346s] Searching alignments... [124.757s] Deallocating memory... [0s] Deallocating buffers... [2.332s] Clearing query masking... [1.73s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.227s] Sorting trace points... [1.989s] Computing alignments... [54.266s] Deallocating buffers... [0.039s] Loading trace points... [0.063s] Sorting trace points... [1.855s] Computing alignments... [54.282s] Deallocating buffers... [0.041s] Loading trace points... [0.098s] Sorting trace points... [1.74s] Computing alignments... [55.219s] Deallocating buffers... [0.035s] Loading trace points... [0.075s] Sorting trace points... [1.499s] Computing alignments... [58.568s] Deallocating buffers... [0.045s] Loading trace points... [0.059s] Sorting trace points... [1.873s] Computing alignments... [55.354s] Deallocating buffers... [0.094s] Loading trace points... [0.073s] Sorting trace points... [1.921s] Computing alignments... [55.762s] Deallocating buffers... [0.034s] Loading trace points... [0.066s] Sorting trace points... [1.743s] Computing alignments... [55.012s] Deallocating buffers... [0.04s] Loading trace points... [0.055s] Sorting trace points... [1.904s] Computing alignments... [55.049s] Deallocating buffers... [0.105s] Loading trace points... [0.065s] Sorting trace points... [1.851s] Computing alignments... [56.272s] Deallocating buffers... [0.035s] Loading trace points... [0.071s] Sorting trace points... [1.419s] Computing alignments... [56.716s] Deallocating buffers... [0.026s] Loading trace points... [0.068s] Sorting trace points... [1.9s] Computing alignments... [54.89s] Deallocating buffers... [0.038s] Loading trace points... [0.11s] Sorting trace points... [1.948s] Computing alignments... [55.683s] Deallocating buffers... [0.034s] Loading trace points... [0.059s] Sorting trace points... [2.184s] Computing alignments... [55.212s] Deallocating buffers... [0.537s] Loading trace points... [0.087s] Sorting trace points... [1.899s] Computing alignments... [54.743s] Deallocating buffers... [0.04s] Loading trace points... [0.071s] Sorting trace points... [1.91s] Computing alignments... [53.65s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.67s] Computing alignments... [53.811s] Deallocating buffers... [0.037s] Loading trace points... [0s] [926.472s] Deallocating reference... [0.067s] Loading reference sequences... [29.116s] Masking reference... [30.835s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.198s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.1s] Building query seed array... [2.649s] Computing hash join... [5.866s] Masking low complexity seeds... [0.347s] Searching alignments... [433.922s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.354s] Building query seed array... [3.291s] Computing hash join... [5.956s] Masking low complexity seeds... [0.348s] Searching alignments... [179.445s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.375s] Building query seed array... [3.434s] Computing hash join... [5.887s] Masking low complexity seeds... [0.355s] Searching alignments... [139.129s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.121s] Building query seed array... [2.779s] Computing hash join... [5.677s] Masking low complexity seeds... [0.34s] Searching alignments... [137.921s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.043s] Building query seed array... [2.516s] Computing hash join... [5.658s] Masking low complexity seeds... [0.329s] Searching alignments... [198.868s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.164s] Building query seed array... [2.912s] Computing hash join... [5.619s] Masking low complexity seeds... [0.343s] Searching alignments... [160.427s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.816s] Building query seed array... [3.083s] Computing hash join... [5.69s] Masking low complexity seeds... [0.33s] Searching alignments... [120.706s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.962s] Building query seed array... [2.654s] Computing hash join... [5.695s] Masking low complexity seeds... [0.326s] Searching alignments... [124.061s] Deallocating memory... [0s] Deallocating buffers... [0.794s] Clearing query masking... [1.625s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.018s] Sorting trace points... [1.993s] Computing alignments... [57.975s] Deallocating buffers... [0.062s] Loading trace points... [0.055s] Sorting trace points... [1.914s] Computing alignments... [57.492s] Deallocating buffers... [0.152s] Loading trace points... [0.068s] Sorting trace points... [1.497s] Computing alignments... [58.283s] Deallocating buffers... [0.054s] Loading trace points... [0.07s] Sorting trace points... [1.805s] Computing alignments... [62.025s] Deallocating buffers... [0.058s] Loading trace points... [0.081s] Sorting trace points... [1.77s] Computing alignments... [58.349s] Deallocating buffers... [0.036s] Loading trace points... [0.058s] Sorting trace points... [1.7s] Computing alignments... [58.863s] Deallocating buffers... [0.053s] Loading trace points... [0.002s] Sorting trace points... [1.856s] Computing alignments... [58.169s] Deallocating buffers... [0.053s] Loading trace points... [0.051s] Sorting trace points... [1.975s] Computing alignments... [58.203s] Deallocating buffers... [0.052s] Loading trace points... [0.1s] Sorting trace points... [1.886s] Computing alignments... [59.32s] Deallocating buffers... [0.054s] Loading trace points... [0.091s] Sorting trace points... [1.962s] Computing alignments... [59.8s] Deallocating buffers... [0.037s] Loading trace points... [0.046s] Sorting trace points... [1.743s] Computing alignments... [57.835s] Deallocating buffers... [0.229s] Loading trace points... [0.061s] Sorting trace points... [1.895s] Computing alignments... [58.122s] Deallocating buffers... [0.059s] Loading trace points... [0.064s] Sorting trace points... [1.873s] Computing alignments... [58.315s] Deallocating buffers... [0.057s] Loading trace points... [0.044s] Sorting trace points... [1.909s] Computing alignments... [57.585s] Deallocating buffers... [0.039s] Loading trace points... [0.05s] Sorting trace points... [1.6s] Computing alignments... [56.207s] Deallocating buffers... [0.167s] Loading trace points... [0s] Sorting trace points... [1.395s] Computing alignments... [57.376s] Deallocating buffers... [0.058s] Loading trace points... [0s] [974.942s] Deallocating reference... [0.085s] Loading reference sequences... [252.61s] Masking reference... [31.296s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.592s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.214s] Building query seed array... [2.661s] Computing hash join... [6.014s] Masking low complexity seeds... [0.343s] Searching alignments... [429.493s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.254s] Building query seed array... [2.891s] Computing hash join... [6.453s] Masking low complexity seeds... [0.36s] Searching alignments... [179.143s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.766s] Building query seed array... [3.006s] Computing hash join... [6.408s] Masking low complexity seeds... [0.345s] Searching alignments... [138.626s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.024s] Building query seed array... [2.42s] Computing hash join... [6.611s] Masking low complexity seeds... [0.343s] Searching alignments... [137.783s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.32s] Building query seed array... [2.291s] Computing hash join... [6.314s] Masking low complexity seeds... [0.337s] Searching alignments... [200.318s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.1s] Building query seed array... [2.631s] Computing hash join... [6.331s] Masking low complexity seeds... [0.324s] Searching alignments... [158.053s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.42s] Building query seed array... [2.756s] Computing hash join... [6.173s] Masking low complexity seeds... [0.317s] Searching alignments... [120.647s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.932s] Building query seed array... [2.309s] Computing hash join... [6.309s] Masking low complexity seeds... [0.319s] Searching alignments... [122.702s] Deallocating memory... [0s] Deallocating buffers... [0.149s] Clearing query masking... [1.794s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.97s] Sorting trace points... [1.94s] Computing alignments... [48.36s] Deallocating buffers... [0.034s] Loading trace points... [0.053s] Sorting trace points... [1.847s] Computing alignments... [49.383s] Deallocating buffers... [0.031s] Loading trace points... [0.055s] Sorting trace points... [1.876s] Computing alignments... [48.533s] Deallocating buffers... [0.033s] Loading trace points... [0.054s] Sorting trace points... [1.743s] Computing alignments... [51.782s] Deallocating buffers... [0.174s] Loading trace points... [0.694s] Sorting trace points... [1.942s] Computing alignments... [50.391s] Deallocating buffers... [0.023s] Loading trace points... [0.067s] Sorting trace points... [1.735s] Computing alignments... [49.029s] Deallocating buffers... [0.027s] Loading trace points... [0.062s] Sorting trace points... [1.873s] Computing alignments... [48.632s] Deallocating buffers... [0.023s] Loading trace points... [0.067s] Sorting trace points... [1.961s] Computing alignments... [50.213s] Deallocating buffers... [0.023s] Loading trace points... [0.043s] Sorting trace points... [1.894s] Computing alignments... [49.862s] Deallocating buffers... [0.028s] Loading trace points... [0.058s] Sorting trace points... [1.866s] Computing alignments... [49.904s] Deallocating buffers... [0.022s] Loading trace points... [0.075s] Sorting trace points... [1.414s] Computing alignments... [50.196s] Deallocating buffers... [0.025s] Loading trace points... [0.063s] Sorting trace points... [2.104s] Computing alignments... [49.852s] Deallocating buffers... [0.088s] Loading trace points... [0.097s] Sorting trace points... [1.42s] Computing alignments... [49.515s] Deallocating buffers... [0.026s] Loading trace points... [0.07s] Sorting trace points... [1.736s] Computing alignments... [50.285s] Deallocating buffers... [0.023s] Loading trace points... [0.063s] Sorting trace points... [1.538s] Computing alignments... [48.271s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.386s] Computing alignments... [48.571s] Deallocating buffers... [0.037s] Loading trace points... [0s] [833.327s] Deallocating reference... [0.078s] Loading reference sequences... [32.752s] Masking reference... [31.057s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.833s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.627s] Building query seed array... [2.608s] Computing hash join... [6.275s] Masking low complexity seeds... [0.435s] Searching alignments... [429.898s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.463s] Building query seed array... [3.212s] Computing hash join... [6.139s] Masking low complexity seeds... [0.419s] Searching alignments... [177.573s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.979s] Building query seed array... [3.246s] Computing hash join... [6.25s] Masking low complexity seeds... [0.357s] Searching alignments... [140.839s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.669s] Building query seed array... [2.769s] Computing hash join... [6.203s] Masking low complexity seeds... [0.437s] Searching alignments... [137.074s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.866s] Building query seed array... [2.639s] Computing hash join... [5.172s] Masking low complexity seeds... [0.336s] Searching alignments... [202.41s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.788s] Building query seed array... [2.978s] Computing hash join... [5.253s] Masking low complexity seeds... [0.34s] Searching alignments... [158.445s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.586s] Building query seed array... [2.936s] Computing hash join... [5.398s] Masking low complexity seeds... [0.381s] Searching alignments... [117.531s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.588s] Building query seed array... [2.522s] Computing hash join... [5.33s] Masking low complexity seeds... [0.325s] Searching alignments... [126.163s] Deallocating memory... [0s] Deallocating buffers... [1.463s] Clearing query masking... [1.68s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.113s] Sorting trace points... [1.917s] Computing alignments... [48.507s] Deallocating buffers... [0.029s] Loading trace points... [0.055s] Sorting trace points... [1.844s] Computing alignments... [49.353s] Deallocating buffers... [0.033s] Loading trace points... [0.068s] Sorting trace points... [1.635s] Computing alignments... [48.94s] Deallocating buffers... [0.12s] Loading trace points... [0.046s] Sorting trace points... [1.982s] Computing alignments... [51.409s] Deallocating buffers... [0.039s] Loading trace points... [0.068s] Sorting trace points... [1.452s] Computing alignments... [50.321s] Deallocating buffers... [0.027s] Loading trace points... [0.065s] Sorting trace points... [2.004s] Computing alignments... [49.63s] Deallocating buffers... [0.289s] Loading trace points... [0.063s] Sorting trace points... [1.378s] Computing alignments... [48.849s] Deallocating buffers... [0.025s] Loading trace points... [0.044s] Sorting trace points... [2.169s] Computing alignments... [50.528s] Deallocating buffers... [0.137s] Loading trace points... [0.07s] Sorting trace points... [1.892s] Computing alignments... [49.637s] Deallocating buffers... [0.17s] Loading trace points... [0.056s] Sorting trace points... [1.721s] Computing alignments... [49.816s] Deallocating buffers... [0.074s] Loading trace points... [0.001s] Sorting trace points... [1.917s] Computing alignments... [49.937s] Deallocating buffers... [0.193s] Loading trace points... [0.056s] Sorting trace points... [1.897s] Computing alignments... [49.406s] Deallocating buffers... [0.028s] Loading trace points... [0.048s] Sorting trace points... [1.578s] Computing alignments... [49.518s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [2.138s] Computing alignments... [49.967s] Deallocating buffers... [0.028s] Loading trace points... [0.043s] Sorting trace points... [1.942s] Computing alignments... [48.274s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.319s] Computing alignments... [48.394s] Deallocating buffers... [0.033s] Loading trace points... [0s] [833.456s] Deallocating reference... [0.07s] Loading reference sequences... [29.185s] Masking reference... [30.868s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.899s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.069s] Building query seed array... [2.552s] Computing hash join... [6.871s] Masking low complexity seeds... [0.44s] Searching alignments... [433.959s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.585s] Building query seed array... [3.287s] Computing hash join... [6.278s] Masking low complexity seeds... [0.352s] Searching alignments... [180.967s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.441s] Building query seed array... [3.407s] Computing hash join... [6.343s] Masking low complexity seeds... [0.356s] Searching alignments... [138.287s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.717s] Building query seed array... [2.849s] Computing hash join... [5.82s] Masking low complexity seeds... [0.426s] Searching alignments... [136.571s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.647s] Building query seed array... [2.626s] Computing hash join... [5.526s] Masking low complexity seeds... [0.363s] Searching alignments... [198.811s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.085s] Building query seed array... [2.858s] Computing hash join... [6.236s] Masking low complexity seeds... [0.328s] Searching alignments... [156.118s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.088s] Building query seed array... [3.014s] Computing hash join... [6.229s] Masking low complexity seeds... [0.373s] Searching alignments... [118.198s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.606s] Building query seed array... [2.64s] Computing hash join... [5.763s] Masking low complexity seeds... [0.371s] Searching alignments... [125.051s] Deallocating memory... [0s] Deallocating buffers... [2.772s] Clearing query masking... [1.76s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.054s] Sorting trace points... [2.023s] Computing alignments... [47.826s] Deallocating buffers... [0.035s] Loading trace points... [0.121s] Sorting trace points... [2.039s] Computing alignments... [47.701s] Deallocating buffers... [0.419s] Loading trace points... [0.045s] Sorting trace points... [1.682s] Computing alignments... [47.605s] Deallocating buffers... [0.025s] Loading trace points... [0.001s] Sorting trace points... [1.994s] Computing alignments... [50.253s] Deallocating buffers... [0.286s] Loading trace points... [0.062s] Sorting trace points... [1.874s] Computing alignments... [48.976s] Deallocating buffers... [0.028s] Loading trace points... [0.064s] Sorting trace points... [1.485s] Computing alignments... [47.891s] Deallocating buffers... [0.026s] Loading trace points... [0.646s] Sorting trace points... [1.879s] Computing alignments... [47.551s] Deallocating buffers... [0.026s] Loading trace points... [0.083s] Sorting trace points... [1.942s] Computing alignments... [48.79s] Deallocating buffers... [0.029s] Loading trace points... [0.052s] Sorting trace points... [1.939s] Computing alignments... [48.203s] Deallocating buffers... [0.022s] Loading trace points... [0.06s] Sorting trace points... [1.708s] Computing alignments... [48.178s] Deallocating buffers... [0.027s] Loading trace points... [0.068s] Sorting trace points... [1.896s] Computing alignments... [48.211s] Deallocating buffers... [0.024s] Loading trace points... [0.061s] Sorting trace points... [1.557s] Computing alignments... [48.218s] Deallocating buffers... [0.134s] Loading trace points... [0.091s] Sorting trace points... [1.454s] Computing alignments... [47.816s] Deallocating buffers... [0.036s] Loading trace points... [0.085s] Sorting trace points... [1.906s] Computing alignments... [48.224s] Deallocating buffers... [0.083s] Loading trace points... [0.11s] Sorting trace points... [1.913s] Computing alignments... [46.788s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [1.815s] Computing alignments... [47.043s] Deallocating buffers... [0.027s] Loading trace points... [0s] [811.443s] Deallocating reference... [0.056s] Loading reference sequences... [29.002s] Masking reference... [30.946s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.212s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.28s] Building query seed array... [2.634s] Computing hash join... [6.805s] Masking low complexity seeds... [0.37s] Searching alignments... [435.514s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.008s] Building query seed array... [3.375s] Computing hash join... [5.98s] Masking low complexity seeds... [0.336s] Searching alignments... [183.161s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.416s] Building query seed array... [3.106s] Computing hash join... [5.354s] Masking low complexity seeds... [0.365s] Searching alignments... [141.982s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.593s] Building query seed array... [2.823s] Computing hash join... [6.581s] Masking low complexity seeds... [0.367s] Searching alignments... [137.906s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.546s] Building query seed array... [2.449s] Computing hash join... [5.594s] Masking low complexity seeds... [0.366s] Searching alignments... [202.322s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.421s] Building query seed array... [3.047s] Computing hash join... [5.587s] Masking low complexity seeds... [0.372s] Searching alignments... [158.263s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.736s] Building query seed array... [2.933s] Computing hash join... [5.534s] Masking low complexity seeds... [0.386s] Searching alignments... [119.865s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.592s] Building query seed array... [2.468s] Computing hash join... [5.435s] Masking low complexity seeds... [0.328s] Searching alignments... [124.076s] Deallocating memory... [0s] Deallocating buffers... [2.045s] Clearing query masking... [1.636s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.041s] Sorting trace points... [1.95s] Computing alignments... [55.599s] Deallocating buffers... [0.06s] Loading trace points... [0.064s] Sorting trace points... [1.982s] Computing alignments... [55.872s] Deallocating buffers... [0.061s] Loading trace points... [0.065s] Sorting trace points... [1.749s] Computing alignments... [56.329s] Deallocating buffers... [0.307s] Loading trace points... [0.129s] Sorting trace points... [2.254s] Computing alignments... [60.002s] Deallocating buffers... [0.216s] Loading trace points... [0.092s] Sorting trace points... [1.798s] Computing alignments... [56.347s] Deallocating buffers... [0.193s] Loading trace points... [0.06s] Sorting trace points... [1.426s] Computing alignments... [57.075s] Deallocating buffers... [0.059s] Loading trace points... [0.109s] Sorting trace points... [1.651s] Computing alignments... [56.251s] Deallocating buffers... [0.148s] Loading trace points... [0.071s] Sorting trace points... [1.529s] Computing alignments... [56.572s] Deallocating buffers... [0.074s] Loading trace points... [0.1s] Sorting trace points... [1.895s] Computing alignments... [57.496s] Deallocating buffers... [0.061s] Loading trace points... [0.069s] Sorting trace points... [1.87s] Computing alignments... [57.757s] Deallocating buffers... [0.075s] Loading trace points... [0.001s] Sorting trace points... [1.932s] Computing alignments... [55.735s] Deallocating buffers... [0.053s] Loading trace points... [0.071s] Sorting trace points... [1.618s] Computing alignments... [56.503s] Deallocating buffers... [0.06s] Loading trace points... [0.052s] Sorting trace points... [1.905s] Computing alignments... [55.92s] Deallocating buffers... [0.055s] Loading trace points... [0.001s] Sorting trace points... [2.004s] Computing alignments... [55.945s] Deallocating buffers... [0.072s] Loading trace points... [0.058s] Sorting trace points... [1.7s] Computing alignments... [54.521s] Deallocating buffers... [0.319s] Loading trace points... [0s] Sorting trace points... [1.373s] Computing alignments... [55.368s] Deallocating buffers... [0.065s] Loading trace points... [0s] [945.028s] Deallocating reference... [0.078s] Loading reference sequences... [32.705s] Masking reference... [32.047s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.056s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.381s] Building query seed array... [2.613s] Computing hash join... [5.923s] Masking low complexity seeds... [0.53s] Searching alignments... [430.841s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.598s] Building query seed array... [3.151s] Computing hash join... [5.958s] Masking low complexity seeds... [0.341s] Searching alignments... [178.831s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.542s] Building query seed array... [3.154s] Computing hash join... [6.034s] Masking low complexity seeds... [0.475s] Searching alignments... [139.711s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.492s] Building query seed array... [2.781s] Computing hash join... [5.876s] Masking low complexity seeds... [0.354s] Searching alignments... [135.417s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.936s] Building query seed array... [2.533s] Computing hash join... [5.575s] Masking low complexity seeds... [0.331s] Searching alignments... [200.937s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.473s] Building query seed array... [2.734s] Computing hash join... [5.739s] Masking low complexity seeds... [0.34s] Searching alignments... [161.403s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.373s] Building query seed array... [2.973s] Computing hash join... [5.768s] Masking low complexity seeds... [0.345s] Searching alignments... [116.507s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.091s] Building query seed array... [2.406s] Computing hash join... [5.852s] Masking low complexity seeds... [0.332s] Searching alignments... [121.392s] Deallocating memory... [0s] Deallocating buffers... [0.921s] Clearing query masking... [1.665s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.233s] Sorting trace points... [1.411s] Computing alignments... [46.979s] Deallocating buffers... [0.039s] Loading trace points... [0.057s] Sorting trace points... [1.857s] Computing alignments... [46.106s] Deallocating buffers... [0.022s] Loading trace points... [0.056s] Sorting trace points... [1.836s] Computing alignments... [46.248s] Deallocating buffers... [0.028s] Loading trace points... [0.077s] Sorting trace points... [1.896s] Computing alignments... [49.132s] Deallocating buffers... [0.04s] Loading trace points... [0.068s] Sorting trace points... [1.664s] Computing alignments... [48.06s] Deallocating buffers... [0.027s] Loading trace points... [0.296s] Sorting trace points... [1.932s] Computing alignments... [47.049s] Deallocating buffers... [0.022s] Loading trace points... [0.064s] Sorting trace points... [1.842s] Computing alignments... [46.427s] Deallocating buffers... [0.028s] Loading trace points... [0.034s] Sorting trace points... [1.631s] Computing alignments... [47.82s] Deallocating buffers... [0.025s] Loading trace points... [0.053s] Sorting trace points... [1.874s] Computing alignments... [47.184s] Deallocating buffers... [0.022s] Loading trace points... [0.048s] Sorting trace points... [1.873s] Computing alignments... [47.305s] Deallocating buffers... [0.028s] Loading trace points... [0.064s] Sorting trace points... [2.136s] Computing alignments... [47.235s] Deallocating buffers... [0.345s] Loading trace points... [0.101s] Sorting trace points... [1.97s] Computing alignments... [47.332s] Deallocating buffers... [0.062s] Loading trace points... [0.044s] Sorting trace points... [2.047s] Computing alignments... [46.738s] Deallocating buffers... [0.249s] Loading trace points... [0.099s] Sorting trace points... [1.962s] Computing alignments... [47.115s] Deallocating buffers... [0.036s] Loading trace points... [0.047s] Sorting trace points... [2.13s] Computing alignments... [45.726s] Deallocating buffers... [0.215s] Loading trace points... [0s] Sorting trace points... [1.807s] Computing alignments... [45.793s] Deallocating buffers... [0.035s] Loading trace points... [0s] [794.79s] Deallocating reference... [0.056s] Loading reference sequences... [31.279s] Masking reference... [31.422s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [32.502s] Allocating buffers... [0.001s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.491s] Building query seed array... [2.575s] Computing hash join... [6.754s] Masking low complexity seeds... [0.399s] Searching alignments... [433.727s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.088s] Building query seed array... [3.124s] Computing hash join... [6.118s] Masking low complexity seeds... [0.341s] Searching alignments... [179.352s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.798s] Building query seed array... [3.187s] Computing hash join... [5.897s] Masking low complexity seeds... [0.366s] Searching alignments... [141.353s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.082s] Building query seed array... [2.9s] Computing hash join... [5.535s] Masking low complexity seeds... [0.339s] Searching alignments... [136.798s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.981s] Building query seed array... [2.585s] Computing hash join... [6.063s] Masking low complexity seeds... [0.379s] Searching alignments... [199.662s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.349s] Building query seed array... [2.843s] Computing hash join... [5.747s] Masking low complexity seeds... [0.37s] Searching alignments... [159.062s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.701s] Building query seed array... [3.028s] Computing hash join... [5.807s] Masking low complexity seeds... [0.336s] Searching alignments... [119.601s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.039s] Building query seed array... [2.431s] Computing hash join... [5.861s] Masking low complexity seeds... [0.393s] Searching alignments... [126.148s] Deallocating memory... [0s] Deallocating buffers... [2.067s] Clearing query masking... [1.653s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.167s] Sorting trace points... [2.027s] Computing alignments... [57.024s] Deallocating buffers... [0.038s] Loading trace points... [0.057s] Sorting trace points... [1.388s] Computing alignments... [57.747s] Deallocating buffers... [0.037s] Loading trace points... [0.083s] Sorting trace points... [1.538s] Computing alignments... [56.686s] Deallocating buffers... [0.145s] Loading trace points... [0.067s] Sorting trace points... [2.3s] Computing alignments... [61.812s] Deallocating buffers... [0.45s] Loading trace points... [0.079s] Sorting trace points... [1.559s] Computing alignments... [58.5s] Deallocating buffers... [0.036s] Loading trace points... [0.088s] Sorting trace points... [1.529s] Computing alignments... [58.361s] Deallocating buffers... [0.029s] Loading trace points... [0.075s] Sorting trace points... [1.423s] Computing alignments... [57.158s] Deallocating buffers... [0.043s] Loading trace points... [0.096s] Sorting trace points... [1.474s] Computing alignments... [58.526s] Deallocating buffers... [0.046s] Loading trace points... [0.098s] Sorting trace points... [1.887s] Computing alignments... [58.919s] Deallocating buffers... [0.051s] Loading trace points... [0.103s] Sorting trace points... [1.952s] Computing alignments... [59.443s] Deallocating buffers... [0.031s] Loading trace points... [0.052s] Sorting trace points... [2.272s] Computing alignments... [57.45s] Deallocating buffers... [0.079s] Loading trace points... [0.07s] Sorting trace points... [1.665s] Computing alignments... [57.448s] Deallocating buffers... [0.035s] Loading trace points... [0.062s] Sorting trace points... [2.065s] Computing alignments... [57.829s] Deallocating buffers... [0.188s] Loading trace points... [0.048s] Sorting trace points... [1.661s] Computing alignments... [57.632s] Deallocating buffers... [0.189s] Loading trace points... [0.066s] Sorting trace points... [2.223s] Computing alignments... [55.885s] Deallocating buffers... [0.26s] Loading trace points... [0s] Sorting trace points... [1.674s] Computing alignments... [56.758s] Deallocating buffers... [0.194s] Loading trace points... [0s] [969.082s] Deallocating reference... [0.071s] Loading reference sequences... [29.945s] Masking reference... [32.146s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [32.452s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.075s] Building query seed array... [2.567s] Computing hash join... [6.229s] Masking low complexity seeds... [0.345s] Searching alignments... [431.02s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.87s] Building query seed array... [3.131s] Computing hash join... [5.969s] Masking low complexity seeds... [0.397s] Searching alignments... [184.414s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.705s] Building query seed array... [3.218s] Computing hash join... [6.404s] Masking low complexity seeds... [0.364s] Searching alignments... [139.172s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.531s] Building query seed array... [2.735s] Computing hash join... [6.616s] Masking low complexity seeds... [0.458s] Searching alignments... [137.152s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.499s] Building query seed array... [2.632s] Computing hash join... [6.214s] Masking low complexity seeds... [0.346s] Searching alignments... [204.459s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.705s] Building query seed array... [2.885s] Computing hash join... [5.504s] Masking low complexity seeds... [0.348s] Searching alignments... [161.179s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.078s] Building query seed array... [3.066s] Computing hash join... [5.683s] Masking low complexity seeds... [0.396s] Searching alignments... [119.182s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.518s] Building query seed array... [2.523s] Computing hash join... [6.08s] Masking low complexity seeds... [0.332s] Searching alignments... [122.961s] Deallocating memory... [0s] Deallocating buffers... [2.09s] Clearing query masking... [1.731s] Opening temporary output file... [1.219s] Computing alignments... Loading trace points... [10.066s] Sorting trace points... [1.882s] Computing alignments... [56.971s] Deallocating buffers... [0.091s] Loading trace points... [0.076s] Sorting trace points... [1.924s] Computing alignments... [56.671s] Deallocating buffers... [0.068s] Loading trace points... [0.001s] Sorting trace points... [1.859s] Computing alignments... [57.211s] Deallocating buffers... [0.439s] Loading trace points... [0.076s] Sorting trace points... [2.021s] Computing alignments... [60.826s] Deallocating buffers... [0.106s] Loading trace points... [0.067s] Sorting trace points... [2.03s] Computing alignments... [56.971s] Deallocating buffers... [0.348s] Loading trace points... [0.103s] Sorting trace points... [1.884s] Computing alignments... [58.035s] Deallocating buffers... [0.083s] Loading trace points... [0.081s] Sorting trace points... [1.878s] Computing alignments... [56.992s] Deallocating buffers... [0.055s] Loading trace points... [0.094s] Sorting trace points... [2.139s] Computing alignments... [57.635s] Deallocating buffers... [0.292s] Loading trace points... [0.053s] Sorting trace points... [2.302s] Computing alignments... [58.313s] Deallocating buffers... [0.468s] Loading trace points... [0.114s] Sorting trace points... [1.666s] Computing alignments... [59.19s] Deallocating buffers... [0.079s] Loading trace points... [0.086s] Sorting trace points... [2.026s] Computing alignments... [56.419s] Deallocating buffers... [0.285s] Loading trace points... [0.062s] Sorting trace points... [1.667s] Computing alignments... [57.047s] Deallocating buffers... [0.101s] Loading trace points... [0.076s] Sorting trace points... [1.597s] Computing alignments... [56.616s] Deallocating buffers... [0.205s] Loading trace points... [0.069s] Sorting trace points... [1.966s] Computing alignments... [56.807s] Deallocating buffers... [0.216s] Loading trace points... [0.09s] Sorting trace points... [2.005s] Computing alignments... [55.826s] Deallocating buffers... [0.276s] Loading trace points... [0.011s] Sorting trace points... [1.484s] Computing alignments... [56.515s] Deallocating buffers... [0.165s] Loading trace points... [0s] [962.932s] Deallocating reference... [0.078s] Loading reference sequences... [31.437s] Masking reference... [30.86s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [33.55s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.133s] Building query seed array... [2.724s] Computing hash join... [6.174s] Masking low complexity seeds... [0.344s] Searching alignments... [432.64s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.58s] Building query seed array... [3.288s] Computing hash join... [6.416s] Masking low complexity seeds... [0.337s] Searching alignments... [181.589s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.781s] Building query seed array... [3.125s] Computing hash join... [6.317s] Masking low complexity seeds... [0.336s] Searching alignments... [140.817s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.022s] Building query seed array... [2.675s] Computing hash join... [6.375s] Masking low complexity seeds... [0.34s] Searching alignments... [136.505s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.188s] Building query seed array... [2.55s] Computing hash join... [6.335s] Masking low complexity seeds... [0.391s] Searching alignments... [204.95s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.177s] Building query seed array... [2.738s] Computing hash join... [6.276s] Masking low complexity seeds... [0.321s] Searching alignments... [159.271s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.073s] Building query seed array... [2.878s] Computing hash join... [6.355s] Masking low complexity seeds... [0.38s] Searching alignments... [118.904s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.843s] Building query seed array... [2.43s] Computing hash join... [6.34s] Masking low complexity seeds... [0.323s] Searching alignments... [123.14s] Deallocating memory... [0s] Deallocating buffers... [0.568s] Clearing query masking... [1.847s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.063s] Sorting trace points... [1.927s] Computing alignments... [54.933s] Deallocating buffers... [0.036s] Loading trace points... [0.069s] Sorting trace points... [1.494s] Computing alignments... [54.899s] Deallocating buffers... [0.034s] Loading trace points... [0.084s] Sorting trace points... [1.93s] Computing alignments... [55.174s] Deallocating buffers... [0.177s] Loading trace points... [0.055s] Sorting trace points... [1.675s] Computing alignments... [59.035s] Deallocating buffers... [0.046s] Loading trace points... [0.062s] Sorting trace points... [1.74s] Computing alignments... [55.668s] Deallocating buffers... [0.027s] Loading trace points... [0.057s] Sorting trace points... [1.9s] Computing alignments... [55.76s] Deallocating buffers... [0.023s] Loading trace points... [0.066s] Sorting trace points... [1.921s] Computing alignments... [55.072s] Deallocating buffers... [0.056s] Loading trace points... [0.044s] Sorting trace points... [1.943s] Computing alignments... [56.215s] Deallocating buffers... [0.315s] Loading trace points... [0.079s] Sorting trace points... [1.419s] Computing alignments... [56.801s] Deallocating buffers... [0.049s] Loading trace points... [0.09s] Sorting trace points... [2.181s] Computing alignments... [56.749s] Deallocating buffers... [0.187s] Loading trace points... [0.001s] Sorting trace points... [1.885s] Computing alignments... [55.558s] Deallocating buffers... [0.213s] Loading trace points... [0.076s] Sorting trace points... [1.542s] Computing alignments... [55.469s] Deallocating buffers... [0.045s] Loading trace points... [0.098s] Sorting trace points... [1.906s] Computing alignments... [55.055s] Deallocating buffers... [0.043s] Loading trace points... [0s] Sorting trace points... [1.523s] Computing alignments... [55.564s] Deallocating buffers... [0.037s] Loading trace points... [0.049s] Sorting trace points... [2.033s] Computing alignments... [53.912s] Deallocating buffers... [0.187s] Loading trace points... [0s] Sorting trace points... [1.977s] Computing alignments... [54.903s] Deallocating buffers... [0.249s] Loading trace points... [0s] [932.538s] Deallocating reference... [0.073s] Loading reference sequences... [23.654s] Masking reference... [25.059s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.004s] Building reference histograms... [27.239s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.343s] Building query seed array... [2.588s] Computing hash join... [4.462s] Masking low complexity seeds... [0.319s] Searching alignments... [344.996s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.097s] Building query seed array... [2.876s] Computing hash join... [4.866s] Masking low complexity seeds... [0.318s] Searching alignments... [145.236s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.008s] Building query seed array... [3.021s] Computing hash join... [4.476s] Masking low complexity seeds... [0.326s] Searching alignments... [113.037s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.118s] Building query seed array... [2.429s] Computing hash join... [4.789s] Masking low complexity seeds... [0.332s] Searching alignments... [108.49s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.117s] Building query seed array... [2.301s] Computing hash join... [4.616s] Masking low complexity seeds... [0.306s] Searching alignments... [159.386s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.964s] Building query seed array... [2.602s] Computing hash join... [4.459s] Masking low complexity seeds... [0.31s] Searching alignments... [128.514s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.129s] Building query seed array... [2.804s] Computing hash join... [4.445s] Masking low complexity seeds... [0.294s] Searching alignments... [95.819s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.34s] Building query seed array... [2.322s] Computing hash join... [4.262s] Masking low complexity seeds... [0.299s] Searching alignments... [102.569s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [1.682s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.297s] Sorting trace points... [1.602s] Computing alignments... [42.562s] Deallocating buffers... [0.028s] Loading trace points... [0.061s] Sorting trace points... [1.455s] Computing alignments... [41.518s] Deallocating buffers... [0.03s] Loading trace points... [0.035s] Sorting trace points... [1.528s] Computing alignments... [42.711s] Deallocating buffers... [0.028s] Loading trace points... [0.06s] Sorting trace points... [1.472s] Computing alignments... [45.521s] Deallocating buffers... [0.032s] Loading trace points... [0.002s] Sorting trace points... [1.587s] Computing alignments... [43.203s] Deallocating buffers... [0.056s] Loading trace points... [0.081s] Sorting trace points... [1.529s] Computing alignments... [43.555s] Deallocating buffers... [0.019s] Loading trace points... [0.078s] Sorting trace points... [1.335s] Computing alignments... [43.363s] Deallocating buffers... [0.031s] Loading trace points... [0.052s] Sorting trace points... [1.49s] Computing alignments... [43.108s] Deallocating buffers... [0.099s] Loading trace points... [0.09s] Sorting trace points... [1.617s] Computing alignments... [43.42s] Deallocating buffers... [0.146s] Loading trace points... [0.053s] Sorting trace points... [1.464s] Computing alignments... [43.476s] Deallocating buffers... [0.055s] Loading trace points... [0.051s] Sorting trace points... [1.48s] Computing alignments... [42.523s] Deallocating buffers... [0.067s] Loading trace points... [0.094s] Sorting trace points... [1.588s] Computing alignments... [43.611s] Deallocating buffers... [0.032s] Loading trace points... [0.067s] Sorting trace points... [1.572s] Computing alignments... [42.645s] Deallocating buffers... [0.025s] Loading trace points... [0.049s] Sorting trace points... [1.221s] Computing alignments... [42.464s] Deallocating buffers... [0.03s] Loading trace points... [0.061s] Sorting trace points... [1.574s] Computing alignments... [41.669s] Deallocating buffers... [0.058s] Loading trace points... [0s] Sorting trace points... [1.118s] Computing alignments... [41.576s] Deallocating buffers... [0.029s] Loading trace points... [0s] [720.574s] Deallocating reference... [0.093s] Loading reference sequences... [0.105s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2911.66s] [2911.66s] Deallocating queries... [0.08s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.54s] [4.454s] Closing the database... [0s] Cleaning up... [0s] Total time = 39951.2s Reported 3061215345 pairwise alignments, 3061215345 HSPs. 3572438 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-04.trimmed.R2.fastq.gz complete: CH07-04.trimmed.R2.blastx.meganized.daa Now MEGANizing CH07-04.trimmed.R2.blastx.meganized.daa MoTTY X11 proxy: Authorisation not recognised In case you are trying to start a graphical application with "sudo", read this article in order to avoid this issue: https://blog.mobatek.net/post/how-to-keep-X11-display-after-su-or-sudo/ Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-04.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (402.6s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,118.2s) Total reads: 3,572,438 With hits: 3,572,438 Alignments: 2,396,785,437 Assig. Taxonomy: 2,339,971 Assig. SEED: 99,094 Assig. EGGNOG: 34,528 Assig. GTDB: 235,973 Assig. EC: 368,437 Assig. INTERPRO2GO: 958,566 MinSupport set to: 1786 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 6,332 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.3s) Min-supp. changes: 4,999 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6.1s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 201 Class. SEED: 512 Class. EGGNOG: 1,822 Class. GTDB: 66 Class. EC: 2,568 Class. INTERPRO2GO: 8,920 Total time: 5,546s Peak memory: 31.8 of 195.3G MEGANization of CH07-04.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R1.fastq.gz... db6739f62a769bc9ea66f3d0192f1d3b /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.317s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.734s] Opening the output file... [0s] Loading query sequences... [87.288s] Masking queries... [24.451s] Algorithm: Double-indexed Building query histograms... [18.528s] Loading reference sequences... [29.24s] Masking reference... [30.831s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.756s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.304s] Building query seed array... [2.098s] Computing hash join... [5.679s] Masking low complexity seeds... [0.185s] Searching alignments... [714.82s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.587s] Building query seed array... [2.411s] Computing hash join... [5.639s] Masking low complexity seeds... [0.191s] Searching alignments... [303.392s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.684s] Building query seed array... [2.514s] Computing hash join... [5.594s] Masking low complexity seeds... [0.197s] Searching alignments... [229.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.184s] Building query seed array... [2.057s] Computing hash join... [5.132s] Masking low complexity seeds... [0.188s] Searching alignments... [226.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.523s] Building query seed array... [1.942s] Computing hash join... [5.193s] Masking low complexity seeds... [0.177s] Searching alignments... [334.329s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.212s] Building query seed array... [2.181s] Computing hash join... [5.18s] Masking low complexity seeds... [0.184s] Searching alignments... [258.657s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.345s] Building query seed array... [2.338s] Computing hash join... [5.432s] Masking low complexity seeds... [0.183s] Searching alignments... [188.86s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.878s] Building query seed array... [1.875s] Computing hash join... [4.767s] Masking low complexity seeds... [0.173s] Searching alignments... [196.599s] Deallocating memory... [0s] Deallocating buffers... [0.15s] Clearing query masking... [1.454s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.154s] Sorting trace points... [2.813s] Computing alignments... [82.288s] Deallocating buffers... [0.048s] Loading trace points... [0.078s] Sorting trace points... [2.679s] Computing alignments... [86.384s] Deallocating buffers... [0.056s] Loading trace points... [0.044s] Sorting trace points... [3.084s] Computing alignments... [84.353s] Deallocating buffers... [0.408s] Loading trace points... [0.076s] Sorting trace points... [2.226s] Computing alignments... [87.008s] Deallocating buffers... [0.058s] Loading trace points... [0.119s] Sorting trace points... [2.045s] Computing alignments... [83.817s] Deallocating buffers... [0.057s] Loading trace points... [0.078s] Sorting trace points... [2.31s] Computing alignments... [82.431s] Deallocating buffers... [0.05s] Loading trace points... [0.06s] Sorting trace points... [2.999s] Computing alignments... [85.032s] Deallocating buffers... [0.266s] Loading trace points... [0.099s] Sorting trace points... [2.877s] Computing alignments... [85.63s] Deallocating buffers... [0.196s] Loading trace points... [0.066s] Sorting trace points... [2.809s] Computing alignments... [84.084s] Deallocating buffers... [0.05s] Loading trace points... [0.11s] Sorting trace points... [2.897s] Computing alignments... [85.23s] Deallocating buffers... [0.049s] Loading trace points... [0.066s] Sorting trace points... [3.31s] Computing alignments... [86.603s] Deallocating buffers... [0.483s] Loading trace points... [0.097s] Sorting trace points... [2.847s] Computing alignments... [86.298s] Deallocating buffers... [0.185s] Loading trace points... [0.047s] Sorting trace points... [2.865s] Computing alignments... [84.774s] Deallocating buffers... [0.05s] Loading trace points... [0.074s] Sorting trace points... [2.739s] Computing alignments... [86.362s] Deallocating buffers... [0.05s] Loading trace points... [0.105s] Sorting trace points... [3.113s] Computing alignments... [85.198s] Deallocating buffers... [0.393s] Loading trace points... [0s] Sorting trace points... [2.881s] Computing alignments... [87.131s] Deallocating buffers... [0.062s] Loading trace points... [0s] [1425.04s] Deallocating reference... [0.063s] Loading reference sequences... [29.888s] Masking reference... [32.165s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.586s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.646s] Building query seed array... [2.181s] Computing hash join... [5.563s] Masking low complexity seeds... [0.191s] Searching alignments... [703.355s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.831s] Building query seed array... [2.859s] Computing hash join... [5.431s] Masking low complexity seeds... [0.19s] Searching alignments... [299.903s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.316s] Building query seed array... [2.829s] Computing hash join... [4.962s] Masking low complexity seeds... [0.181s] Searching alignments... [221.176s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.429s] Building query seed array... [2.264s] Computing hash join... [4.902s] Masking low complexity seeds... [0.18s] Searching alignments... [227.754s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.9s] Building query seed array... [2.064s] Computing hash join... [4.737s] Masking low complexity seeds... [0.172s] Searching alignments... [330.67s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.216s] Building query seed array... [2.326s] Computing hash join... [4.799s] Masking low complexity seeds... [0.171s] Searching alignments... [254.196s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.769s] Building query seed array... [2.558s] Computing hash join... [5.559s] Masking low complexity seeds... [0.184s] Searching alignments... [185.125s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.438s] Building query seed array... [2.087s] Computing hash join... [4.867s] Masking low complexity seeds... [0.176s] Searching alignments... [193.241s] Deallocating memory... [0s] Deallocating buffers... [0.933s] Clearing query masking... [1.428s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.26s] Sorting trace points... [2.64s] Computing alignments... [86.971s] Deallocating buffers... [0.082s] Loading trace points... [0.072s] Sorting trace points... [2.182s] Computing alignments... [90.714s] Deallocating buffers... [0.313s] Loading trace points... [0.092s] Sorting trace points... [1.991s] Computing alignments... [89.323s] Deallocating buffers... [0.08s] Loading trace points... [0.081s] Sorting trace points... [2.435s] Computing alignments... [91.447s] Deallocating buffers... [0.061s] Loading trace points... [0.077s] Sorting trace points... [2.826s] Computing alignments... [88.341s] Deallocating buffers... [0.265s] Loading trace points... [0.89s] Sorting trace points... [2.063s] Computing alignments... [86.118s] Deallocating buffers... [0.077s] Loading trace points... [0.077s] Sorting trace points... [2.49s] Computing alignments... [90.106s] Deallocating buffers... [0.077s] Loading trace points... [0.049s] Sorting trace points... [2.476s] Computing alignments... [90.409s] Deallocating buffers... [0.076s] Loading trace points... [0.049s] Sorting trace points... [2.305s] Computing alignments... [88.301s] Deallocating buffers... [0.072s] Loading trace points... [0.049s] Sorting trace points... [2.122s] Computing alignments... [88.797s] Deallocating buffers... [0.073s] Loading trace points... [0.048s] Sorting trace points... [2.292s] Computing alignments... [90.027s] Deallocating buffers... [0.08s] Loading trace points... [0.04s] Sorting trace points... [2.48s] Computing alignments... [89.772s] Deallocating buffers... [0.078s] Loading trace points... [0.094s] Sorting trace points... [2.299s] Computing alignments... [88.485s] Deallocating buffers... [0.075s] Loading trace points... [0.04s] Sorting trace points... [2.255s] Computing alignments... [91.455s] Deallocating buffers... [0.114s] Loading trace points... [0.108s] Sorting trace points... [2.758s] Computing alignments... [89.72s] Deallocating buffers... [0.159s] Loading trace points... [0s] Sorting trace points... [2.229s] Computing alignments... [92.763s] Deallocating buffers... [0.094s] Loading trace points... [0s] [1488.49s] Deallocating reference... [0.067s] Loading reference sequences... [29.029s] Masking reference... [30.878s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.832s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.592s] Building query seed array... [2.132s] Computing hash join... [5.357s] Masking low complexity seeds... [0.177s] Searching alignments... [707.271s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.527s] Building query seed array... [3.012s] Computing hash join... [5.203s] Masking low complexity seeds... [0.19s] Searching alignments... [303.386s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.26s] Building query seed array... [2.679s] Computing hash join... [5.65s] Masking low complexity seeds... [0.196s] Searching alignments... [231.07s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.983s] Building query seed array... [2.389s] Computing hash join... [4.949s] Masking low complexity seeds... [0.184s] Searching alignments... [221.878s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.172s] Building query seed array... [2.068s] Computing hash join... [5.328s] Masking low complexity seeds... [0.179s] Searching alignments... [326.631s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.44s] Building query seed array... [2.388s] Computing hash join... [5.055s] Masking low complexity seeds... [0.184s] Searching alignments... [254.198s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.212s] Building query seed array... [2.485s] Computing hash join... [4.833s] Masking low complexity seeds... [0.173s] Searching alignments... [186.671s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.356s] Building query seed array... [2.117s] Computing hash join... [4.868s] Masking low complexity seeds... [0.178s] Searching alignments... [197.411s] Deallocating memory... [0s] Deallocating buffers... [0.74s] Clearing query masking... [1.393s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.157s] Sorting trace points... [2.681s] Computing alignments... [86.953s] Deallocating buffers... [0.097s] Loading trace points... [0.064s] Sorting trace points... [2.858s] Computing alignments... [90.655s] Deallocating buffers... [0.095s] Loading trace points... [0.001s] Sorting trace points... [2.899s] Computing alignments... [89.321s] Deallocating buffers... [0.351s] Loading trace points... [0.08s] Sorting trace points... [2.509s] Computing alignments... [90.739s] Deallocating buffers... [0.088s] Loading trace points... [0.063s] Sorting trace points... [2.879s] Computing alignments... [88.648s] Deallocating buffers... [0.088s] Loading trace points... [0.078s] Sorting trace points... [2.814s] Computing alignments... [86.26s] Deallocating buffers... [0.334s] Loading trace points... [0.051s] Sorting trace points... [1.967s] Computing alignments... [90.35s] Deallocating buffers... [0.071s] Loading trace points... [0.068s] Sorting trace points... [2.864s] Computing alignments... [90.719s] Deallocating buffers... [0.091s] Loading trace points... [0.067s] Sorting trace points... [2.574s] Computing alignments... [88.68s] Deallocating buffers... [0.198s] Loading trace points... [0.076s] Sorting trace points... [2.048s] Computing alignments... [89.985s] Deallocating buffers... [0.067s] Loading trace points... [0.063s] Sorting trace points... [2.175s] Computing alignments... [90.858s] Deallocating buffers... [0.08s] Loading trace points... [0.065s] Sorting trace points... [2.773s] Computing alignments... [90.053s] Deallocating buffers... [0.226s] Loading trace points... [0.039s] Sorting trace points... [2.893s] Computing alignments... [89.267s] Deallocating buffers... [0.311s] Loading trace points... [0.073s] Sorting trace points... [2.345s] Computing alignments... [91.493s] Deallocating buffers... [0.079s] Loading trace points... [0.114s] Sorting trace points... [1.979s] Computing alignments... [90.027s] Deallocating buffers... [0.084s] Loading trace points... [0s] Sorting trace points... [2.801s] Computing alignments... [93.094s] Deallocating buffers... [0.059s] Loading trace points... [0s] [1495.65s] Deallocating reference... [0.059s] Loading reference sequences... [28.98s] Masking reference... [32.141s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.19s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.419s] Building query seed array... [2.126s] Computing hash join... [5.384s] Masking low complexity seeds... [0.182s] Searching alignments... [706.578s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.202s] Building query seed array... [2.966s] Computing hash join... [5.617s] Masking low complexity seeds... [0.203s] Searching alignments... [303.153s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.829s] Building query seed array... [2.741s] Computing hash join... [4.933s] Masking low complexity seeds... [0.18s] Searching alignments... [226.267s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.304s] Building query seed array... [2.27s] Computing hash join... [5.221s] Masking low complexity seeds... [0.182s] Searching alignments... [228.426s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.474s] Building query seed array... [2.084s] Computing hash join... [4.818s] Masking low complexity seeds... [0.169s] Searching alignments... [337.785s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.326s] Building query seed array... [2.356s] Computing hash join... [4.882s] Masking low complexity seeds... [0.177s] Searching alignments... [261.853s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.76s] Building query seed array... [2.469s] Computing hash join... [5.054s] Masking low complexity seeds... [0.176s] Searching alignments... [187.637s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.358s] Building query seed array... [2.183s] Computing hash join... [4.8s] Masking low complexity seeds... [0.162s] Searching alignments... [195.752s] Deallocating memory... [0s] Deallocating buffers... [0.917s] Clearing query masking... [1.333s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.004s] Sorting trace points... [2.808s] Computing alignments... [84.181s] Deallocating buffers... [0.063s] Loading trace points... [0.098s] Sorting trace points... [2.541s] Computing alignments... [88.437s] Deallocating buffers... [0.257s] Loading trace points... [0.057s] Sorting trace points... [2.77s] Computing alignments... [86.503s] Deallocating buffers... [0.051s] Loading trace points... [0.058s] Sorting trace points... [3.178s] Computing alignments... [88.802s] Deallocating buffers... [0.405s] Loading trace points... [0.056s] Sorting trace points... [2.457s] Computing alignments... [86.461s] Deallocating buffers... [0.061s] Loading trace points... [0.089s] Sorting trace points... [2.03s] Computing alignments... [84.227s] Deallocating buffers... [0.057s] Loading trace points... [0.045s] Sorting trace points... [2.851s] Computing alignments... [87.883s] Deallocating buffers... [0.049s] Loading trace points... [0.073s] Sorting trace points... [2.709s] Computing alignments... [89.113s] Deallocating buffers... [0.043s] Loading trace points... [0.059s] Sorting trace points... [2.934s] Computing alignments... [86.507s] Deallocating buffers... [0.358s] Loading trace points... [0.066s] Sorting trace points... [2.652s] Computing alignments... [87.546s] Deallocating buffers... [0.056s] Loading trace points... [0.072s] Sorting trace points... [2.703s] Computing alignments... [88.373s] Deallocating buffers... [0.172s] Loading trace points... [0.078s] Sorting trace points... [2.895s] Computing alignments... [87.99s] Deallocating buffers... [0.057s] Loading trace points... [0.002s] Sorting trace points... [2.46s] Computing alignments... [86.88s] Deallocating buffers... [0.219s] Loading trace points... [0.063s] Sorting trace points... [2.365s] Computing alignments... [89.581s] Deallocating buffers... [0.066s] Loading trace points... [0.076s] Sorting trace points... [2.049s] Computing alignments... [86.765s] Deallocating buffers... [0.061s] Loading trace points... [0s] Sorting trace points... [2.913s] Computing alignments... [90.186s] Deallocating buffers... [0.055s] Loading trace points... [0s] [1458.81s] Deallocating reference... [0.096s] Loading reference sequences... [246.731s] Masking reference... [30.93s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.421s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.341s] Building query seed array... [2.176s] Computing hash join... [5.577s] Masking low complexity seeds... [0.19s] Searching alignments... [701.331s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [11.971s] Building query seed array... [2.899s] Computing hash join... [5.651s] Masking low complexity seeds... [0.203s] Searching alignments... [298.695s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.123s] Building query seed array... [2.682s] Computing hash join... [5.596s] Masking low complexity seeds... [0.195s] Searching alignments... [223.702s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.022s] Building query seed array... [2.379s] Computing hash join... [5.114s] Masking low complexity seeds... [0.19s] Searching alignments... [229.172s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.17s] Building query seed array... [2.15s] Computing hash join... [5.317s] Masking low complexity seeds... [0.183s] Searching alignments... [331.776s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.656s] Building query seed array... [2.45s] Computing hash join... [5.383s] Masking low complexity seeds... [0.191s] Searching alignments... [255.376s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.642s] Building query seed array... [2.507s] Computing hash join... [5.164s] Masking low complexity seeds... [0.182s] Searching alignments... [186.196s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.991s] Building query seed array... [2.094s] Computing hash join... [5.007s] Masking low complexity seeds... [0.185s] Searching alignments... [192.594s] Deallocating memory... [0s] Deallocating buffers... [0.856s] Clearing query masking... [1.399s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.243s] Sorting trace points... [2.874s] Computing alignments... [90.017s] Deallocating buffers... [0.097s] Loading trace points... [0.055s] Sorting trace points... [2.06s] Computing alignments... [94.862s] Deallocating buffers... [0.07s] Loading trace points... [0.057s] Sorting trace points... [2.024s] Computing alignments... [92.878s] Deallocating buffers... [0.089s] Loading trace points... [0.072s] Sorting trace points... [2.578s] Computing alignments... [94.403s] Deallocating buffers... [0.081s] Loading trace points... [0.056s] Sorting trace points... [3.079s] Computing alignments... [92.199s] Deallocating buffers... [0.335s] Loading trace points... [0.069s] Sorting trace points... [2.249s] Computing alignments... [90.002s] Deallocating buffers... [0.084s] Loading trace points... [0.057s] Sorting trace points... [2.193s] Computing alignments... [94.021s] Deallocating buffers... [0.079s] Loading trace points... [0.052s] Sorting trace points... [2.163s] Computing alignments... [94.318s] Deallocating buffers... [0.093s] Loading trace points... [0.066s] Sorting trace points... [2.439s] Computing alignments... [92.015s] Deallocating buffers... [0.092s] Loading trace points... [0.08s] Sorting trace points... [2.286s] Computing alignments... [93.23s] Deallocating buffers... [0.071s] Loading trace points... [0.84s] Sorting trace points... [2.209s] Computing alignments... [94.372s] Deallocating buffers... [0.066s] Loading trace points... [0.057s] Sorting trace points... [2.874s] Computing alignments... [93.716s] Deallocating buffers... [0.131s] Loading trace points... [0.062s] Sorting trace points... [2.113s] Computing alignments... [93.216s] Deallocating buffers... [0.079s] Loading trace points... [0.052s] Sorting trace points... [2.027s] Computing alignments... [94.944s] Deallocating buffers... [0.085s] Loading trace points... [0.071s] Sorting trace points... [2.511s] Computing alignments... [92.662s] Deallocating buffers... [0.084s] Loading trace points... [0s] Sorting trace points... [2.31s] Computing alignments... [97.054s] Deallocating buffers... [0.192s] Loading trace points... [0s] [1549.61s] Deallocating reference... [0.073s] Loading reference sequences... [260.001s] Masking reference... [31.194s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [31.914s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.512s] Building query seed array... [2.137s] Computing hash join... [5.251s] Masking low complexity seeds... [0.185s] Searching alignments... [694.342s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.846s] Building query seed array... [2.799s] Computing hash join... [5.532s] Masking low complexity seeds... [0.197s] Searching alignments... [295.943s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.858s] Building query seed array... [2.694s] Computing hash join... [5.165s] Masking low complexity seeds... [0.187s] Searching alignments... [229.909s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.037s] Building query seed array... [2.292s] Computing hash join... [5.133s] Masking low complexity seeds... [0.19s] Searching alignments... [223.599s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.897s] Building query seed array... [2.023s] Computing hash join... [5.278s] Masking low complexity seeds... [0.183s] Searching alignments... [324.46s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.318s] Building query seed array... [2.288s] Computing hash join... [5.287s] Masking low complexity seeds... [0.178s] Searching alignments... [256.304s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.269s] Building query seed array... [2.351s] Computing hash join... [5.157s] Masking low complexity seeds... [0.177s] Searching alignments... [187.308s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.105s] Building query seed array... [2.014s] Computing hash join... [5.182s] Masking low complexity seeds... [0.179s] Searching alignments... [191.232s] Deallocating memory... [0s] Deallocating buffers... [0.453s] Clearing query masking... [1.394s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [14.671s] Sorting trace points... [2.505s] Computing alignments... [87.326s] Deallocating buffers... [0.06s] Loading trace points... [0.062s] Sorting trace points... [2.057s] Computing alignments... [91.418s] Deallocating buffers... [0.053s] Loading trace points... [0.061s] Sorting trace points... [2.946s] Computing alignments... [89.177s] Deallocating buffers... [0.147s] Loading trace points... [0.004s] Sorting trace points... [2.966s] Computing alignments... [92.983s] Deallocating buffers... [0.054s] Loading trace points... [0.063s] Sorting trace points... [2.605s] Computing alignments... [89.008s] Deallocating buffers... [0.287s] Loading trace points... [0.001s] Sorting trace points... [2.203s] Computing alignments... [86.725s] Deallocating buffers... [0.043s] Loading trace points... [0.045s] Sorting trace points... [2.911s] Computing alignments... [89.861s] Deallocating buffers... [0.331s] Loading trace points... [0.004s] Sorting trace points... [2.784s] Computing alignments... [91.198s] Deallocating buffers... [0.052s] Loading trace points... [0.078s] Sorting trace points... [2.042s] Computing alignments... [89.192s] Deallocating buffers... [0.052s] Loading trace points... [0.045s] Sorting trace points... [2.173s] Computing alignments... [89.765s] Deallocating buffers... [0.055s] Loading trace points... [0.085s] Sorting trace points... [2.914s] Computing alignments... [90.922s] Deallocating buffers... [0.273s] Loading trace points... [0.075s] Sorting trace points... [2.616s] Computing alignments... [91.547s] Deallocating buffers... [0.064s] Loading trace points... [0.073s] Sorting trace points... [2.945s] Computing alignments... [89.895s] Deallocating buffers... [0.291s] Loading trace points... [0.099s] Sorting trace points... [2.116s] Computing alignments... [91.902s] Deallocating buffers... [0.053s] Loading trace points... [0.069s] Sorting trace points... [2.048s] Computing alignments... [89.425s] Deallocating buffers... [0.054s] Loading trace points... [0s] Sorting trace points... [2.951s] Computing alignments... [92.858s] Deallocating buffers... [0.182s] Loading trace points... [0s] [1501.61s] Deallocating reference... [0.069s] Loading reference sequences... [34.875s] Masking reference... [30.9s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.738s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.194s] Building query seed array... [2.102s] Computing hash join... [5.638s] Masking low complexity seeds... [0.185s] Searching alignments... [704.007s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.838s] Building query seed array... [2.709s] Computing hash join... [5.698s] Masking low complexity seeds... [0.196s] Searching alignments... [301.909s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.5s] Building query seed array... [2.74s] Computing hash join... [5.207s] Masking low complexity seeds... [0.183s] Searching alignments... [224.761s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.354s] Building query seed array... [2.319s] Computing hash join... [5.306s] Masking low complexity seeds... [0.208s] Searching alignments... [228.393s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.574s] Building query seed array... [2.108s] Computing hash join... [5.186s] Masking low complexity seeds... [0.176s] Searching alignments... [336.36s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.457s] Building query seed array... [2.384s] Computing hash join... [4.904s] Masking low complexity seeds... [0.167s] Searching alignments... [259.67s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.616s] Building query seed array... [2.432s] Computing hash join... [5.214s] Masking low complexity seeds... [0.177s] Searching alignments... [185.665s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.403s] Building query seed array... [2.001s] Computing hash join... [4.842s] Masking low complexity seeds... [0.168s] Searching alignments... [192.584s] Deallocating memory... [0s] Deallocating buffers... [1.115s] Clearing query masking... [1.411s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.063s] Sorting trace points... [2.112s] Computing alignments... [87.138s] Deallocating buffers... [0.052s] Loading trace points... [0.072s] Sorting trace points... [3.087s] Computing alignments... [92.451s] Deallocating buffers... [0.402s] Loading trace points... [0.062s] Sorting trace points... [3.008s] Computing alignments... [89.709s] Deallocating buffers... [0.179s] Loading trace points... [0.001s] Sorting trace points... [3.027s] Computing alignments... [92.857s] Deallocating buffers... [0.044s] Loading trace points... [0.056s] Sorting trace points... [2.932s] Computing alignments... [89.878s] Deallocating buffers... [0.519s] Loading trace points... [0.001s] Sorting trace points... [2.733s] Computing alignments... [87.154s] Deallocating buffers... [0.045s] Loading trace points... [0.055s] Sorting trace points... [2.184s] Computing alignments... [90.22s] Deallocating buffers... [0.125s] Loading trace points... [0.035s] Sorting trace points... [2.375s] Computing alignments... [91.279s] Deallocating buffers... [0.036s] Loading trace points... [0.061s] Sorting trace points... [2.773s] Computing alignments... [89.057s] Deallocating buffers... [0.049s] Loading trace points... [0.048s] Sorting trace points... [2.822s] Computing alignments... [90.65s] Deallocating buffers... [0.405s] Loading trace points... [0.001s] Sorting trace points... [2.799s] Computing alignments... [91.251s] Deallocating buffers... [0.05s] Loading trace points... [0.114s] Sorting trace points... [2.866s] Computing alignments... [91.685s] Deallocating buffers... [0.065s] Loading trace points... [0.067s] Sorting trace points... [2.067s] Computing alignments... [90.72s] Deallocating buffers... [0.151s] Loading trace points... [0.085s] Sorting trace points... [2.848s] Computing alignments... [92.672s] Deallocating buffers... [0.119s] Loading trace points... [0.059s] Sorting trace points... [2.821s] Computing alignments... [90.436s] Deallocating buffers... [0.049s] Loading trace points... [0s] Sorting trace points... [2.225s] Computing alignments... [93.495s] Deallocating buffers... [0.286s] Loading trace points... [0s] [1510.77s] Deallocating reference... [0.064s] Loading reference sequences... [29.042s] Masking reference... [30.883s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.15s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.339s] Building query seed array... [2.113s] Computing hash join... [5.602s] Masking low complexity seeds... [0.183s] Searching alignments... [708.292s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.854s] Building query seed array... [2.838s] Computing hash join... [5.564s] Masking low complexity seeds... [0.19s] Searching alignments... [298.476s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.203s] Building query seed array... [2.665s] Computing hash join... [5.653s] Masking low complexity seeds... [0.197s] Searching alignments... [221.609s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.324s] Building query seed array... [2.221s] Computing hash join... [5.503s] Masking low complexity seeds... [0.181s] Searching alignments... [223.572s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.653s] Building query seed array... [2.066s] Computing hash join... [5.004s] Masking low complexity seeds... [0.184s] Searching alignments... [327.692s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.683s] Building query seed array... [2.363s] Computing hash join... [4.766s] Masking low complexity seeds... [0.178s] Searching alignments... [254.376s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.786s] Building query seed array... [2.503s] Computing hash join... [5.461s] Masking low complexity seeds... [0.18s] Searching alignments... [187.114s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.296s] Building query seed array... [2.077s] Computing hash join... [5.152s] Masking low complexity seeds... [0.177s] Searching alignments... [197.497s] Deallocating memory... [0s] Deallocating buffers... [0.808s] Clearing query masking... [1.415s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.967s] Sorting trace points... [2.752s] Computing alignments... [83.748s] Deallocating buffers... [0.048s] Loading trace points... [1.151s] Sorting trace points... [2.337s] Computing alignments... [88.334s] Deallocating buffers... [0.05s] Loading trace points... [0.089s] Sorting trace points... [2.235s] Computing alignments... [86.286s] Deallocating buffers... [0.052s] Loading trace points... [0.792s] Sorting trace points... [3.032s] Computing alignments... [88.079s] Deallocating buffers... [0.263s] Loading trace points... [0.069s] Sorting trace points... [1.923s] Computing alignments... [85.762s] Deallocating buffers... [0.065s] Loading trace points... [0.971s] Sorting trace points... [2.867s] Computing alignments... [82.784s] Deallocating buffers... [0.25s] Loading trace points... [0.05s] Sorting trace points... [2.712s] Computing alignments... [86.595s] Deallocating buffers... [0.05s] Loading trace points... [0.07s] Sorting trace points... [2.324s] Computing alignments... [87.569s] Deallocating buffers... [0.334s] Loading trace points... [0.075s] Sorting trace points... [2.794s] Computing alignments... [85.025s] Deallocating buffers... [0.165s] Loading trace points... [0.069s] Sorting trace points... [2.267s] Computing alignments... [86.814s] Deallocating buffers... [0.064s] Loading trace points... [0.071s] Sorting trace points... [2.693s] Computing alignments... [87.117s] Deallocating buffers... [0.246s] Loading trace points... [0.085s] Sorting trace points... [3.295s] Computing alignments... [87.207s] Deallocating buffers... [0.333s] Loading trace points... [0.035s] Sorting trace points... [2.939s] Computing alignments... [85.923s] Deallocating buffers... [0.315s] Loading trace points... [0.075s] Sorting trace points... [2.811s] Computing alignments... [87.878s] Deallocating buffers... [0.041s] Loading trace points... [0.065s] Sorting trace points... [2.529s] Computing alignments... [85.785s] Deallocating buffers... [0.234s] Loading trace points... [0s] Sorting trace points... [2.95s] Computing alignments... [88.669s] Deallocating buffers... [0.22s] Loading trace points... [0s] [1446.54s] Deallocating reference... [0.063s] Loading reference sequences... [29.841s] Masking reference... [30.873s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.872s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.439s] Building query seed array... [2.177s] Computing hash join... [5.579s] Masking low complexity seeds... [0.194s] Searching alignments... [714.929s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.769s] Building query seed array... [2.972s] Computing hash join... [5.437s] Masking low complexity seeds... [0.194s] Searching alignments... [302.857s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.311s] Building query seed array... [2.807s] Computing hash join... [5.625s] Masking low complexity seeds... [0.191s] Searching alignments... [226.01s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.07s] Building query seed array... [2.348s] Computing hash join... [5.168s] Masking low complexity seeds... [0.232s] Searching alignments... [226.093s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.239s] Building query seed array... [2.051s] Computing hash join... [5.323s] Masking low complexity seeds... [0.173s] Searching alignments... [328.282s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.681s] Building query seed array... [2.422s] Computing hash join... [5.343s] Masking low complexity seeds... [0.176s] Searching alignments... [253.532s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.539s] Building query seed array... [2.48s] Computing hash join... [4.975s] Masking low complexity seeds... [0.18s] Searching alignments... [187.804s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.357s] Building query seed array... [2.094s] Computing hash join... [5.044s] Masking low complexity seeds... [0.176s] Searching alignments... [197.422s] Deallocating memory... [0s] Deallocating buffers... [0.724s] Clearing query masking... [1.395s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [14.272s] Sorting trace points... [2.771s] Computing alignments... [85.187s] Deallocating buffers... [0.085s] Loading trace points... [0.06s] Sorting trace points... [2.323s] Computing alignments... [89.178s] Deallocating buffers... [0.076s] Loading trace points... [0.063s] Sorting trace points... [2.183s] Computing alignments... [87.89s] Deallocating buffers... [0.071s] Loading trace points... [0.74s] Sorting trace points... [2.919s] Computing alignments... [89.549s] Deallocating buffers... [0.053s] Loading trace points... [0.094s] Sorting trace points... [2.225s] Computing alignments... [87.224s] Deallocating buffers... [0.077s] Loading trace points... [0.05s] Sorting trace points... [2.13s] Computing alignments... [85.452s] Deallocating buffers... [0.069s] Loading trace points... [0.069s] Sorting trace points... [2.737s] Computing alignments... [88.663s] Deallocating buffers... [0.215s] Loading trace points... [0.045s] Sorting trace points... [2.178s] Computing alignments... [88.825s] Deallocating buffers... [0.071s] Loading trace points... [0.001s] Sorting trace points... [2.056s] Computing alignments... [86.011s] Deallocating buffers... [0.079s] Loading trace points... [0.513s] Sorting trace points... [2.849s] Computing alignments... [87.719s] Deallocating buffers... [0.071s] Loading trace points... [0.095s] Sorting trace points... [2.676s] Computing alignments... [88.718s] Deallocating buffers... [0.296s] Loading trace points... [0.075s] Sorting trace points... [2.949s] Computing alignments... [88.464s] Deallocating buffers... [0.067s] Loading trace points... [0.055s] Sorting trace points... [3.098s] Computing alignments... [87.974s] Deallocating buffers... [0.491s] Loading trace points... [0s] Sorting trace points... [2.805s] Computing alignments... [90.401s] Deallocating buffers... [0.071s] Loading trace points... [0.088s] Sorting trace points... [2.508s] Computing alignments... [88.119s] Deallocating buffers... [0.09s] Loading trace points... [0s] Sorting trace points... [2.436s] Computing alignments... [90.959s] Deallocating buffers... [0.076s] Loading trace points... [0s] [1469.5s] Deallocating reference... [0.091s] Loading reference sequences... [29.587s] Masking reference... [30.893s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.525s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.216s] Building query seed array... [2.136s] Computing hash join... [5.868s] Masking low complexity seeds... [0.187s] Searching alignments... [709.795s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.952s] Building query seed array... [2.717s] Computing hash join... [5.837s] Masking low complexity seeds... [0.183s] Searching alignments... [300.225s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.78s] Building query seed array... [2.776s] Computing hash join... [5.408s] Masking low complexity seeds... [0.194s] Searching alignments... [225.896s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.247s] Building query seed array... [2.297s] Computing hash join... [5.291s] Masking low complexity seeds... [0.179s] Searching alignments... [222.802s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.294s] Building query seed array... [2.176s] Computing hash join... [4.943s] Masking low complexity seeds... [0.178s] Searching alignments... [330.904s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.769s] Building query seed array... [2.35s] Computing hash join... [4.802s] Masking low complexity seeds... [0.188s] Searching alignments... [261.843s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.039s] Building query seed array... [2.437s] Computing hash join... [5.016s] Masking low complexity seeds... [0.175s] Searching alignments... [186.191s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.13s] Building query seed array... [2.067s] Computing hash join... [5.17s] Masking low complexity seeds... [0.193s] Searching alignments... [195.34s] Deallocating memory... [0s] Deallocating buffers... [1.223s] Clearing query masking... [1.422s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.21s] Sorting trace points... [2.718s] Computing alignments... [76.66s] Deallocating buffers... [0.061s] Loading trace points... [0.059s] Sorting trace points... [2.565s] Computing alignments... [79.943s] Deallocating buffers... [0.222s] Loading trace points... [0.041s] Sorting trace points... [2.802s] Computing alignments... [78.458s] Deallocating buffers... [0.074s] Loading trace points... [0.002s] Sorting trace points... [2.407s] Computing alignments... [81.581s] Deallocating buffers... [0.038s] Loading trace points... [0.07s] Sorting trace points... [3.015s] Computing alignments... [77.991s] Deallocating buffers... [0.323s] Loading trace points... [0s] Sorting trace points... [2.7s] Computing alignments... [76.985s] Deallocating buffers... [0.033s] Loading trace points... [0.057s] Sorting trace points... [2.687s] Computing alignments... [78.979s] Deallocating buffers... [0.049s] Loading trace points... [0.002s] Sorting trace points... [2.873s] Computing alignments... [79.707s] Deallocating buffers... [0.052s] Loading trace points... [0.115s] Sorting trace points... [2.583s] Computing alignments... [77.725s] Deallocating buffers... [0.05s] Loading trace points... [0.044s] Sorting trace points... [3.425s] Computing alignments... [79.016s] Deallocating buffers... [0.443s] Loading trace points... [0.073s] Sorting trace points... [3.06s] Computing alignments... [79.664s] Deallocating buffers... [0.134s] Loading trace points... [0.095s] Sorting trace points... [2.092s] Computing alignments... [80.691s] Deallocating buffers... [0.058s] Loading trace points... [0.051s] Sorting trace points... [2.953s] Computing alignments... [78.276s] Deallocating buffers... [0.168s] Loading trace points... [0.078s] Sorting trace points... [3.153s] Computing alignments... [80.569s] Deallocating buffers... [0.359s] Loading trace points... [0.075s] Sorting trace points... [2.931s] Computing alignments... [79.452s] Deallocating buffers... [0.05s] Loading trace points... [0s] Sorting trace points... [2.828s] Computing alignments... [81.239s] Deallocating buffers... [0.485s] Loading trace points... [0s] [1329.41s] Deallocating reference... [0.066s] Loading reference sequences... [29.125s] Masking reference... [30.865s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.688s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.231s] Building query seed array... [2.105s] Computing hash join... [5.789s] Masking low complexity seeds... [0.182s] Searching alignments... [703.93s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.515s] Building query seed array... [2.93s] Computing hash join... [5.682s] Masking low complexity seeds... [0.199s] Searching alignments... [299.216s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.932s] Building query seed array... [2.683s] Computing hash join... [5.627s] Masking low complexity seeds... [0.193s] Searching alignments... [221.696s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.872s] Building query seed array... [2.427s] Computing hash join... [5.004s] Masking low complexity seeds... [0.194s] Searching alignments... [231.168s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.603s] Building query seed array... [2.156s] Computing hash join... [5.483s] Masking low complexity seeds... [0.199s] Searching alignments... [330.289s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.805s] Building query seed array... [2.459s] Computing hash join... [5.205s] Masking low complexity seeds... [0.179s] Searching alignments... [256.389s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.745s] Building query seed array... [2.471s] Computing hash join... [4.943s] Masking low complexity seeds... [0.165s] Searching alignments... [187.151s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.315s] Building query seed array... [2.069s] Computing hash join... [5.369s] Masking low complexity seeds... [0.192s] Searching alignments... [195.795s] Deallocating memory... [0s] Deallocating buffers... [1.379s] Clearing query masking... [1.371s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.32s] Sorting trace points... [2.719s] Computing alignments... [92.339s] Deallocating buffers... [0.096s] Loading trace points... [0.001s] Sorting trace points... [3.002s] Computing alignments... [96.863s] Deallocating buffers... [0.474s] Loading trace points... [0.066s] Sorting trace points... [2.472s] Computing alignments... [95.243s] Deallocating buffers... [0.075s] Loading trace points... [0.061s] Sorting trace points... [2.313s] Computing alignments... [98.195s] Deallocating buffers... [0.089s] Loading trace points... [0.042s] Sorting trace points... [2.588s] Computing alignments... [94.229s] Deallocating buffers... [0.253s] Loading trace points... [0.056s] Sorting trace points... [2.772s] Computing alignments... [92.855s] Deallocating buffers... [0.088s] Loading trace points... [0.079s] Sorting trace points... [2.249s] Computing alignments... [95.566s] Deallocating buffers... [0.068s] Loading trace points... [0.659s] Sorting trace points... [3.304s] Computing alignments... [96.339s] Deallocating buffers... [0.334s] Loading trace points... [0.057s] Sorting trace points... [2.417s] Computing alignments... [93.091s] Deallocating buffers... [0.081s] Loading trace points... [0.059s] Sorting trace points... [2.445s] Computing alignments... [95.416s] Deallocating buffers... [0.187s] Loading trace points... [0.256s] Sorting trace points... [3.116s] Computing alignments... [96.254s] Deallocating buffers... [0.186s] Loading trace points... [0.056s] Sorting trace points... [2.606s] Computing alignments... [96.249s] Deallocating buffers... [0.072s] Loading trace points... [0.086s] Sorting trace points... [2.968s] Computing alignments... [94.2s] Deallocating buffers... [0.309s] Loading trace points... [0.044s] Sorting trace points... [2.405s] Computing alignments... [98.037s] Deallocating buffers... [0.088s] Loading trace points... [0.039s] Sorting trace points... [2.159s] Computing alignments... [95.511s] Deallocating buffers... [0.086s] Loading trace points... [0s] Sorting trace points... [2.098s] Computing alignments... [99.234s] Deallocating buffers... [0.069s] Loading trace points... [0s] [1589.79s] Deallocating reference... [0.062s] Loading reference sequences... [250.894s] Masking reference... [30.991s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.881s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.923s] Building query seed array... [2.17s] Computing hash join... [5.377s] Masking low complexity seeds... [0.188s] Searching alignments... [710.364s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.253s] Building query seed array... [2.983s] Computing hash join... [5.578s] Masking low complexity seeds... [0.208s] Searching alignments... [302.191s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.822s] Building query seed array... [2.813s] Computing hash join... [5.005s] Masking low complexity seeds... [0.18s] Searching alignments... [230.371s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.193s] Building query seed array... [2.337s] Computing hash join... [4.938s] Masking low complexity seeds... [0.186s] Searching alignments... [228.536s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.01s] Building query seed array... [2.15s] Computing hash join... [5.466s] Masking low complexity seeds... [0.185s] Searching alignments... [335.631s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.373s] Building query seed array... [2.343s] Computing hash join... [5.205s] Masking low complexity seeds... [0.171s] Searching alignments... [260.324s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.811s] Building query seed array... [2.479s] Computing hash join... [5.398s] Masking low complexity seeds... [0.189s] Searching alignments... [188.504s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.164s] Building query seed array... [2.128s] Computing hash join... [5.354s] Masking low complexity seeds... [0.183s] Searching alignments... [202.226s] Deallocating memory... [0s] Deallocating buffers... [0.791s] Clearing query masking... [1.422s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.334s] Sorting trace points... [2.777s] Computing alignments... [89.748s] Deallocating buffers... [0.109s] Loading trace points... [0.055s] Sorting trace points... [2.405s] Computing alignments... [93.747s] Deallocating buffers... [0.221s] Loading trace points... [0.059s] Sorting trace points... [2.694s] Computing alignments... [92.553s] Deallocating buffers... [0.096s] Loading trace points... [0.085s] Sorting trace points... [2.63s] Computing alignments... [95.071s] Deallocating buffers... [0.103s] Loading trace points... [0.068s] Sorting trace points... [2.102s] Computing alignments... [92.113s] Deallocating buffers... [0.082s] Loading trace points... [0.066s] Sorting trace points... [2.195s] Computing alignments... [89.088s] Deallocating buffers... [0.096s] Loading trace points... [0.053s] Sorting trace points... [3.06s] Computing alignments... [93.121s] Deallocating buffers... [0.273s] Loading trace points... [0.615s] Sorting trace points... [2.474s] Computing alignments... [93.92s] Deallocating buffers... [0.154s] Loading trace points... [0.081s] Sorting trace points... [2.464s] Computing alignments... [91.536s] Deallocating buffers... [0.079s] Loading trace points... [0.073s] Sorting trace points... [2.874s] Computing alignments... [92.43s] Deallocating buffers... [0.326s] Loading trace points... [0.086s] Sorting trace points... [3.114s] Computing alignments... [93.661s] Deallocating buffers... [0.314s] Loading trace points... [0.135s] Sorting trace points... [2.41s] Computing alignments... [93.619s] Deallocating buffers... [0.109s] Loading trace points... [0.593s] Sorting trace points... [2.076s] Computing alignments... [91.8s] Deallocating buffers... [0.095s] Loading trace points... [0.094s] Sorting trace points... [2.042s] Computing alignments... [95.377s] Deallocating buffers... [0.095s] Loading trace points... [0.069s] Sorting trace points... [2.503s] Computing alignments... [92.875s] Deallocating buffers... [0.103s] Loading trace points... [0s] Sorting trace points... [2.933s] Computing alignments... [97.373s] Deallocating buffers... [0.225s] Loading trace points... [0s] [1547.85s] Deallocating reference... [0.068s] Loading reference sequences... [28.956s] Masking reference... [30.845s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.728s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.949s] Building query seed array... [2.165s] Computing hash join... [5.441s] Masking low complexity seeds... [0.189s] Searching alignments... [709.325s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.377s] Building query seed array... [3.009s] Computing hash join... [5.5s] Masking low complexity seeds... [0.19s] Searching alignments... [301.757s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.262s] Building query seed array... [2.729s] Computing hash join... [5.086s] Masking low complexity seeds... [0.174s] Searching alignments... [226.104s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.609s] Building query seed array... [2.425s] Computing hash join... [4.91s] Masking low complexity seeds... [0.197s] Searching alignments... [224.847s] Deallocating memory... [0.002s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.377s] Building query seed array... [2.176s] Computing hash join... [5.176s] Masking low complexity seeds... [0.18s] Searching alignments... [337.454s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.603s] Building query seed array... [2.378s] Computing hash join... [5.204s] Masking low complexity seeds... [0.191s] Searching alignments... [256.446s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.181s] Building query seed array... [2.437s] Computing hash join... [4.841s] Masking low complexity seeds... [0.172s] Searching alignments... [186.313s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.749s] Building query seed array... [2.285s] Computing hash join... [4.802s] Masking low complexity seeds... [0.181s] Searching alignments... [197.305s] Deallocating memory... [0s] Deallocating buffers... [1.232s] Clearing query masking... [1.381s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.643s] Sorting trace points... [2.027s] Computing alignments... [84.345s] Deallocating buffers... [0.053s] Loading trace points... [0.437s] Sorting trace points... [3.239s] Computing alignments... [87.781s] Deallocating buffers... [0.357s] Loading trace points... [0.073s] Sorting trace points... [2.965s] Computing alignments... [86.873s] Deallocating buffers... [0.255s] Loading trace points... [0.036s] Sorting trace points... [3.323s] Computing alignments... [89.197s] Deallocating buffers... [0.328s] Loading trace points... [0.062s] Sorting trace points... [2.047s] Computing alignments... [86.228s] Deallocating buffers... [0.066s] Loading trace points... [0.035s] Sorting trace points... [1.993s] Computing alignments... [84.195s] Deallocating buffers... [0.046s] Loading trace points... [0.065s] Sorting trace points... [3.2s] Computing alignments... [86.847s] Deallocating buffers... [0.397s] Loading trace points... [0.416s] Sorting trace points... [2.856s] Computing alignments... [87.203s] Deallocating buffers... [0.05s] Loading trace points... [0.001s] Sorting trace points... [3.11s] Computing alignments... [85.907s] Deallocating buffers... [0.546s] Loading trace points... [0.064s] Sorting trace points... [2.338s] Computing alignments... [86.793s] Deallocating buffers... [0.047s] Loading trace points... [0.05s] Sorting trace points... [2.904s] Computing alignments... [87.398s] Deallocating buffers... [0.057s] Loading trace points... [0.001s] Sorting trace points... [2.977s] Computing alignments... [88.288s] Deallocating buffers... [0.446s] Loading trace points... [0.058s] Sorting trace points... [2.081s] Computing alignments... [86.582s] Deallocating buffers... [0.054s] Loading trace points... [0.114s] Sorting trace points... [2.429s] Computing alignments... [88.735s] Deallocating buffers... [0.052s] Loading trace points... [0.095s] Sorting trace points... [3.013s] Computing alignments... [87.138s] Deallocating buffers... [0.265s] Loading trace points... [0s] Sorting trace points... [2.803s] Computing alignments... [89.778s] Deallocating buffers... [0.066s] Loading trace points... [0s] [1455.98s] Deallocating reference... [0.08s] Loading reference sequences... [23.139s] Masking reference... [25.17s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [26.311s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.605s] Building query seed array... [2.116s] Computing hash join... [4.108s] Masking low complexity seeds... [0.175s] Searching alignments... [570.07s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.122s] Building query seed array... [2.399s] Computing hash join... [4.482s] Masking low complexity seeds... [0.179s] Searching alignments... [239.98s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.122s] Building query seed array... [2.468s] Computing hash join... [4.385s] Masking low complexity seeds... [0.182s] Searching alignments... [177.986s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.043s] Building query seed array... [2.074s] Computing hash join... [4.079s] Masking low complexity seeds... [0.17s] Searching alignments... [181.532s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.36s] Building query seed array... [1.932s] Computing hash join... [4.045s] Masking low complexity seeds... [0.176s] Searching alignments... [265.155s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.206s] Building query seed array... [2.179s] Computing hash join... [4.053s] Masking low complexity seeds... [0.157s] Searching alignments... [205.798s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.583s] Building query seed array... [2.161s] Computing hash join... [4.165s] Masking low complexity seeds... [0.165s] Searching alignments... [150.626s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.089s] Building query seed array... [1.865s] Computing hash join... [3.992s] Masking low complexity seeds... [0.173s] Searching alignments... [158.026s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [1.492s] Opening temporary output file... [0.026s] Computing alignments... Loading trace points... [11.905s] Sorting trace points... [2.171s] Computing alignments... [65.208s] Deallocating buffers... [0.026s] Loading trace points... [0.042s] Sorting trace points... [2.078s] Computing alignments... [69.002s] Deallocating buffers... [0.028s] Loading trace points... [0.844s] Sorting trace points... [2.294s] Computing alignments... [67.838s] Deallocating buffers... [0.04s] Loading trace points... [0.061s] Sorting trace points... [2.326s] Computing alignments... [69.445s] Deallocating buffers... [0.05s] Loading trace points... [0.068s] Sorting trace points... [1.936s] Computing alignments... [67.102s] Deallocating buffers... [0.041s] Loading trace points... [0.067s] Sorting trace points... [1.887s] Computing alignments... [65.812s] Deallocating buffers... [0.04s] Loading trace points... [0.078s] Sorting trace points... [2.321s] Computing alignments... [68.477s] Deallocating buffers... [0.04s] Loading trace points... [0.067s] Sorting trace points... [2.417s] Computing alignments... [69.168s] Deallocating buffers... [0.156s] Loading trace points... [0.037s] Sorting trace points... [1.616s] Computing alignments... [67.434s] Deallocating buffers... [0.043s] Loading trace points... [0.04s] Sorting trace points... [2.23s] Computing alignments... [67.776s] Deallocating buffers... [0.027s] Loading trace points... [0.06s] Sorting trace points... [1.662s] Computing alignments... [68.703s] Deallocating buffers... [0.044s] Loading trace points... [0.044s] Sorting trace points... [1.821s] Computing alignments... [68.657s] Deallocating buffers... [0.043s] Loading trace points... [0.078s] Sorting trace points... [2.281s] Computing alignments... [67.342s] Deallocating buffers... [0.04s] Loading trace points... [0.001s] Sorting trace points... [2.16s] Computing alignments... [69.511s] Deallocating buffers... [0.033s] Loading trace points... [0.033s] Sorting trace points... [1.799s] Computing alignments... [67.48s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [2.277s] Computing alignments... [70.154s] Deallocating buffers... [0.029s] Loading trace points... [0s] [1136.66s] Deallocating reference... [0.059s] Loading reference sequences... [0.081s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [5381.14s] [5381.14s] Deallocating queries... [0.059s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.984s] [3.818s] Closing the database... [0s] Cleaning up... [0s] Total time = 63628.4s Reported 5809215200 pairwise alignments, 5809215200 HSPs. 5278696 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R1.fastq.gz complete: CH07-06.trimmed.R1.blastx.meganized.daa Now MEGANizing CH07-06.trimmed.R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-06.trimmed.R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (337.5s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8,931.8s) Total reads: 5,278,696 With hits: 5,278,696 Alignments: 3,954,294,940 Assig. Taxonomy: 3,073,076 Assig. SEED: 136,255 Assig. EGGNOG: 65,672 Assig. GTDB: 347,080 Assig. EC: 503,528 Assig. INTERPRO2GO: 1,399,367 MinSupport set to: 2639 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 5,893 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (24.7s) Min-supp. changes: 3,970 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.2s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 160 Class. SEED: 494 Class. EGGNOG: 1,720 Class. GTDB: 60 Class. EC: 2,367 Class. INTERPRO2GO: 8,767 Total time: 9,317s Peak memory: 41.7 of 195.3G MEGANization of CH07-06.trimmed.R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R2.fastq.gz... 8b977eafb61d9c99f69b99e8ae5fafcc /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R2.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R2.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.296s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.625s] Opening the output file... [0s] Loading query sequences... [86.959s] Masking queries... [24.457s] Algorithm: Double-indexed Building query histograms... [20.181s] Loading reference sequences... [29.143s] Masking reference... [32.131s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.009s] Building reference histograms... [32.32s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.63s] Building query seed array... [2.152s] Computing hash join... [5.688s] Masking low complexity seeds... [0.184s] Searching alignments... [750.859s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.63s] Building query seed array... [2.731s] Computing hash join... [5.471s] Masking low complexity seeds... [0.18s] Searching alignments... [313.393s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.352s] Building query seed array... [2.821s] Computing hash join... [4.88s] Masking low complexity seeds... [0.181s] Searching alignments... [234.32s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.22s] Building query seed array... [2.333s] Computing hash join... [5.05s] Masking low complexity seeds... [0.175s] Searching alignments... [230.994s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.207s] Building query seed array... [2.168s] Computing hash join... [5.179s] Masking low complexity seeds... [0.165s] Searching alignments... [352.819s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.326s] Building query seed array... [2.414s] Computing hash join... [5.492s] Masking low complexity seeds... [0.185s] Searching alignments... [264.425s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.706s] Building query seed array... [2.594s] Computing hash join... [5.192s] Masking low complexity seeds... [0.175s] Searching alignments... [193.948s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.959s] Building query seed array... [2.156s] Computing hash join... [4.761s] Masking low complexity seeds... [0.169s] Searching alignments... [209.209s] Deallocating memory... [0s] Deallocating buffers... [0.74s] Clearing query masking... [1.346s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.459s] Sorting trace points... [2.858s] Computing alignments... [86.865s] Deallocating buffers... [0.056s] Loading trace points... [0.094s] Sorting trace points... [2.493s] Computing alignments... [88.124s] Deallocating buffers... [0.064s] Loading trace points... [0.001s] Sorting trace points... [2.779s] Computing alignments... [85.088s] Deallocating buffers... [0.129s] Loading trace points... [0.11s] Sorting trace points... [2.21s] Computing alignments... [87.717s] Deallocating buffers... [0.043s] Loading trace points... [0.074s] Sorting trace points... [2.953s] Computing alignments... [86.691s] Deallocating buffers... [0.311s] Loading trace points... [0.061s] Sorting trace points... [2.117s] Computing alignments... [83.591s] Deallocating buffers... [0.043s] Loading trace points... [0.056s] Sorting trace points... [2.008s] Computing alignments... [85.128s] Deallocating buffers... [0.062s] Loading trace points... [0.081s] Sorting trace points... [2.796s] Computing alignments... [86.996s] Deallocating buffers... [0.059s] Loading trace points... [0.093s] Sorting trace points... [2.487s] Computing alignments... [85.91s] Deallocating buffers... [0.051s] Loading trace points... [0.095s] Sorting trace points... [2.793s] Computing alignments... [86.204s] Deallocating buffers... [0.049s] Loading trace points... [0.107s] Sorting trace points... [3.151s] Computing alignments... [87.928s] Deallocating buffers... [0.242s] Loading trace points... [0.071s] Sorting trace points... [2.882s] Computing alignments... [87.633s] Deallocating buffers... [0.07s] Loading trace points... [0.001s] Sorting trace points... [3.138s] Computing alignments... [86.901s] Deallocating buffers... [0.458s] Loading trace points... [0.134s] Sorting trace points... [2.167s] Computing alignments... [87.97s] Deallocating buffers... [0.064s] Loading trace points... [0.084s] Sorting trace points... [2.079s] Computing alignments... [84.757s] Deallocating buffers... [0.059s] Loading trace points... [0s] Sorting trace points... [2.003s] Computing alignments... [85.357s] Deallocating buffers... [0.062s] Loading trace points... [0s] [1441.29s] Deallocating reference... [0.077s] Loading reference sequences... [29.26s] Masking reference... [30.926s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.934s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.342s] Building query seed array... [2.194s] Computing hash join... [5.448s] Masking low complexity seeds... [0.177s] Searching alignments... [730.324s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.468s] Building query seed array... [2.516s] Computing hash join... [5.319s] Masking low complexity seeds... [0.177s] Searching alignments... [309.329s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.984s] Building query seed array... [2.615s] Computing hash join... [4.895s] Masking low complexity seeds... [0.172s] Searching alignments... [228.512s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.852s] Building query seed array... [2.159s] Computing hash join... [5.227s] Masking low complexity seeds... [0.17s] Searching alignments... [229.512s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.094s] Building query seed array... [1.973s] Computing hash join... [4.808s] Masking low complexity seeds... [0.175s] Searching alignments... [341.474s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.597s] Building query seed array... [2.212s] Computing hash join... [5.532s] Masking low complexity seeds... [0.167s] Searching alignments... [260.783s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.56s] Building query seed array... [2.39s] Computing hash join... [5.203s] Masking low complexity seeds... [0.174s] Searching alignments... [191.446s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.02s] Building query seed array... [1.911s] Computing hash join... [5.244s] Masking low complexity seeds... [0.175s] Searching alignments... [205.933s] Deallocating memory... [0s] Deallocating buffers... [0.278s] Clearing query masking... [1.463s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.373s] Sorting trace points... [2.823s] Computing alignments... [91.911s] Deallocating buffers... [0.077s] Loading trace points... [0.046s] Sorting trace points... [2.469s] Computing alignments... [94.021s] Deallocating buffers... [0.365s] Loading trace points... [0.042s] Sorting trace points... [2.664s] Computing alignments... [90.838s] Deallocating buffers... [0.09s] Loading trace points... [0.044s] Sorting trace points... [2.297s] Computing alignments... [93.534s] Deallocating buffers... [0.077s] Loading trace points... [0.04s] Sorting trace points... [2.067s] Computing alignments... [92.617s] Deallocating buffers... [0.087s] Loading trace points... [0.071s] Sorting trace points... [2.067s] Computing alignments... [87.65s] Deallocating buffers... [0.085s] Loading trace points... [0.09s] Sorting trace points... [2.12s] Computing alignments... [90.377s] Deallocating buffers... [0.098s] Loading trace points... [0.003s] Sorting trace points... [2.325s] Computing alignments... [93.269s] Deallocating buffers... [0.094s] Loading trace points... [0.001s] Sorting trace points... [2.2s] Computing alignments... [91.76s] Deallocating buffers... [0.093s] Loading trace points... [0.046s] Sorting trace points... [2.735s] Computing alignments... [91.714s] Deallocating buffers... [0.099s] Loading trace points... [0.073s] Sorting trace points... [2.421s] Computing alignments... [92.637s] Deallocating buffers... [0.185s] Loading trace points... [0.045s] Sorting trace points... [2.503s] Computing alignments... [93.611s] Deallocating buffers... [0.097s] Loading trace points... [0.063s] Sorting trace points... [2.026s] Computing alignments... [92.099s] Deallocating buffers... [0.093s] Loading trace points... [0.088s] Sorting trace points... [2.031s] Computing alignments... [94.143s] Deallocating buffers... [0.072s] Loading trace points... [0.001s] Sorting trace points... [2.07s] Computing alignments... [87.816s] Deallocating buffers... [0.089s] Loading trace points... [0s] Sorting trace points... [2.498s] Computing alignments... [90.859s] Deallocating buffers... [0.094s] Loading trace points... [0s] [1523.07s] Deallocating reference... [0.082s] Loading reference sequences... [29.136s] Masking reference... [32.216s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.31s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.567s] Building query seed array... [2.133s] Computing hash join... [5.463s] Masking low complexity seeds... [0.179s] Searching alignments... [741.245s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.552s] Building query seed array... [2.451s] Computing hash join... [5.483s] Masking low complexity seeds... [0.182s] Searching alignments... [310.408s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.998s] Building query seed array... [2.483s] Computing hash join... [5.449s] Masking low complexity seeds... [0.184s] Searching alignments... [232.601s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.198s] Building query seed array... [2.048s] Computing hash join... [5.528s] Masking low complexity seeds... [0.199s] Searching alignments... [231.206s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.04s] Building query seed array... [1.904s] Computing hash join... [5.141s] Masking low complexity seeds... [0.175s] Searching alignments... [349.616s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.174s] Building query seed array... [2.227s] Computing hash join... [5.125s] Masking low complexity seeds... [0.179s] Searching alignments... [267.133s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.098s] Building query seed array... [2.341s] Computing hash join... [4.856s] Masking low complexity seeds... [0.169s] Searching alignments... [194.081s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.997s] Building query seed array... [1.92s] Computing hash join... [5.171s] Masking low complexity seeds... [0.188s] Searching alignments... [203.518s] Deallocating memory... [0s] Deallocating buffers... [0.222s] Clearing query masking... [1.449s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.376s] Sorting trace points... [2.817s] Computing alignments... [91.918s] Deallocating buffers... [0.076s] Loading trace points... [0.162s] Sorting trace points... [2.77s] Computing alignments... [92.986s] Deallocating buffers... [0.079s] Loading trace points... [0.076s] Sorting trace points... [2.59s] Computing alignments... [89.465s] Deallocating buffers... [0.218s] Loading trace points... [0.089s] Sorting trace points... [2.423s] Computing alignments... [91.494s] Deallocating buffers... [0.076s] Loading trace points... [0.126s] Sorting trace points... [2.069s] Computing alignments... [92.03s] Deallocating buffers... [0.07s] Loading trace points... [0.046s] Sorting trace points... [2.098s] Computing alignments... [86.687s] Deallocating buffers... [0.059s] Loading trace points... [0.042s] Sorting trace points... [2.379s] Computing alignments... [89.545s] Deallocating buffers... [0.077s] Loading trace points... [0.083s] Sorting trace points... [2.9s] Computing alignments... [92.155s] Deallocating buffers... [0.072s] Loading trace points... [0.075s] Sorting trace points... [2.657s] Computing alignments... [90.45s] Deallocating buffers... [0.358s] Loading trace points... [0.087s] Sorting trace points... [2.868s] Computing alignments... [90.287s] Deallocating buffers... [0.071s] Loading trace points... [0.093s] Sorting trace points... [2.855s] Computing alignments... [91.593s] Deallocating buffers... [0.082s] Loading trace points... [0.089s] Sorting trace points... [2.484s] Computing alignments... [91.512s] Deallocating buffers... [0.075s] Loading trace points... [0.096s] Sorting trace points... [2.795s] Computing alignments... [91.227s] Deallocating buffers... [0.078s] Loading trace points... [0.078s] Sorting trace points... [2.9s] Computing alignments... [92.85s] Deallocating buffers... [0.32s] Loading trace points... [0.062s] Sorting trace points... [2.396s] Computing alignments... [87.758s] Deallocating buffers... [0.073s] Loading trace points... [0s] Sorting trace points... [2.049s] Computing alignments... [89.283s] Deallocating buffers... [0.061s] Loading trace points... [0s] [1509.87s] Deallocating reference... [0.058s] Loading reference sequences... [28.949s] Masking reference... [30.859s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.253s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.384s] Building query seed array... [2.132s] Computing hash join... [5.689s] Masking low complexity seeds... [0.182s] Searching alignments... [737.145s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.653s] Building query seed array... [2.656s] Computing hash join... [5.343s] Masking low complexity seeds... [0.194s] Searching alignments... [311.961s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.75s] Building query seed array... [2.716s] Computing hash join... [5.04s] Masking low complexity seeds... [0.174s] Searching alignments... [232.827s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.363s] Building query seed array... [2.329s] Computing hash join... [4.895s] Masking low complexity seeds... [0.181s] Searching alignments... [232.07s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.418s] Building query seed array... [2.207s] Computing hash join... [4.962s] Masking low complexity seeds... [0.176s] Searching alignments... [347.42s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.831s] Building query seed array... [2.407s] Computing hash join... [4.767s] Masking low complexity seeds... [0.172s] Searching alignments... [271.412s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.583s] Building query seed array... [2.482s] Computing hash join... [5.447s] Masking low complexity seeds... [0.216s] Searching alignments... [194.668s] Deallocating memory... [0.006s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.914s] Building query seed array... [2.14s] Computing hash join... [4.838s] Masking low complexity seeds... [0.201s] Searching alignments... [210.211s] Deallocating memory... [0s] Deallocating buffers... [1.149s] Clearing query masking... [1.426s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.577s] Sorting trace points... [2.771s] Computing alignments... [89.844s] Deallocating buffers... [0.066s] Loading trace points... [0.066s] Sorting trace points... [2.712s] Computing alignments... [91.051s] Deallocating buffers... [0.068s] Loading trace points... [0.087s] Sorting trace points... [2.071s] Computing alignments... [88.541s] Deallocating buffers... [0.054s] Loading trace points... [0.118s] Sorting trace points... [2.412s] Computing alignments... [90.265s] Deallocating buffers... [0.069s] Loading trace points... [0.849s] Sorting trace points... [2.874s] Computing alignments... [89.745s] Deallocating buffers... [0.058s] Loading trace points... [0.042s] Sorting trace points... [2.791s] Computing alignments... [85.173s] Deallocating buffers... [0.074s] Loading trace points... [0.866s] Sorting trace points... [3.279s] Computing alignments... [86.632s] Deallocating buffers... [0.442s] Loading trace points... [0.072s] Sorting trace points... [2.345s] Computing alignments... [89.996s] Deallocating buffers... [0.068s] Loading trace points... [0.063s] Sorting trace points... [2.408s] Computing alignments... [88.047s] Deallocating buffers... [0.061s] Loading trace points... [0.068s] Sorting trace points... [2.829s] Computing alignments... [89.36s] Deallocating buffers... [0.066s] Loading trace points... [0.061s] Sorting trace points... [2.975s] Computing alignments... [90.234s] Deallocating buffers... [0.394s] Loading trace points... [0.067s] Sorting trace points... [2.11s] Computing alignments... [90.138s] Deallocating buffers... [0.068s] Loading trace points... [0.101s] Sorting trace points... [2.033s] Computing alignments... [88.865s] Deallocating buffers... [0.062s] Loading trace points... [0.061s] Sorting trace points... [2.232s] Computing alignments... [90.735s] Deallocating buffers... [0.056s] Loading trace points... [0.054s] Sorting trace points... [2.483s] Computing alignments... [85.768s] Deallocating buffers... [0.064s] Loading trace points... [0s] Sorting trace points... [2.746s] Computing alignments... [87.681s] Deallocating buffers... [0.069s] Loading trace points... [0s] [1482.15s] Deallocating reference... [0.093s] Loading reference sequences... [253.518s] Masking reference... [31.084s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.838s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.344s] Building query seed array... [2.179s] Computing hash join... [5.638s] Masking low complexity seeds... [0.18s] Searching alignments... [745.103s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.161s] Building query seed array... [2.764s] Computing hash join... [5.57s] Masking low complexity seeds... [0.21s] Searching alignments... [311.091s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.795s] Building query seed array... [2.92s] Computing hash join... [5.124s] Masking low complexity seeds... [0.21s] Searching alignments... [228.918s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.194s] Building query seed array... [2.202s] Computing hash join... [4.928s] Masking low complexity seeds... [0.187s] Searching alignments... [232.194s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.073s] Building query seed array... [2.094s] Computing hash join... [4.69s] Masking low complexity seeds... [0.183s] Searching alignments... [351.299s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.669s] Building query seed array... [2.426s] Computing hash join... [4.826s] Masking low complexity seeds... [0.156s] Searching alignments... [264.333s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.587s] Building query seed array... [2.542s] Computing hash join... [4.839s] Masking low complexity seeds... [0.22s] Searching alignments... [193.736s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.203s] Building query seed array... [2.091s] Computing hash join... [4.921s] Masking low complexity seeds... [0.217s] Searching alignments... [204.558s] Deallocating memory... [0s] Deallocating buffers... [0.957s] Clearing query masking... [1.569s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [14.909s] Sorting trace points... [2.726s] Computing alignments... [96.466s] Deallocating buffers... [0.095s] Loading trace points... [0.062s] Sorting trace points... [2.59s] Computing alignments... [97.091s] Deallocating buffers... [0.347s] Loading trace points... [0.056s] Sorting trace points... [2.187s] Computing alignments... [93.186s] Deallocating buffers... [0.088s] Loading trace points... [0.056s] Sorting trace points... [2.19s] Computing alignments... [95.468s] Deallocating buffers... [0.094s] Loading trace points... [0.065s] Sorting trace points... [2.051s] Computing alignments... [95.671s] Deallocating buffers... [0.094s] Loading trace points... [0.073s] Sorting trace points... [2.188s] Computing alignments... [91.382s] Deallocating buffers... [0.089s] Loading trace points... [0.054s] Sorting trace points... [2.047s] Computing alignments... [92.851s] Deallocating buffers... [0.086s] Loading trace points... [0.056s] Sorting trace points... [3.017s] Computing alignments... [95.837s] Deallocating buffers... [0.205s] Loading trace points... [0.07s] Sorting trace points... [2.071s] Computing alignments... [93.402s] Deallocating buffers... [0.076s] Loading trace points... [0.062s] Sorting trace points... [2.095s] Computing alignments... [95.552s] Deallocating buffers... [0.083s] Loading trace points... [0.062s] Sorting trace points... [2.551s] Computing alignments... [95.715s] Deallocating buffers... [0.09s] Loading trace points... [0.073s] Sorting trace points... [2.648s] Computing alignments... [95.386s] Deallocating buffers... [0.256s] Loading trace points... [0.105s] Sorting trace points... [2.766s] Computing alignments... [95.701s] Deallocating buffers... [0.086s] Loading trace points... [0.047s] Sorting trace points... [2.195s] Computing alignments... [96.423s] Deallocating buffers... [0.081s] Loading trace points... [0.069s] Sorting trace points... [2.156s] Computing alignments... [91.247s] Deallocating buffers... [0.086s] Loading trace points... [0s] Sorting trace points... [2s] Computing alignments... [94.265s] Deallocating buffers... [0.088s] Loading trace points... [0s] [1571.04s] Deallocating reference... [0.069s] Loading reference sequences... [257.619s] Masking reference... [31.254s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.007s] Building reference histograms... [32.382s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.187s] Building query seed array... [2.119s] Computing hash join... [5.386s] Masking low complexity seeds... [0.182s] Searching alignments... [731.932s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.406s] Building query seed array... [2.373s] Computing hash join... [5.303s] Masking low complexity seeds... [0.18s] Searching alignments... [313.005s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.787s] Building query seed array... [2.461s] Computing hash join... [5.466s] Masking low complexity seeds... [0.186s] Searching alignments... [231.663s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.207s] Building query seed array... [2.021s] Computing hash join... [5.121s] Masking low complexity seeds... [0.185s] Searching alignments... [232.089s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.067s] Building query seed array... [1.868s] Computing hash join... [5.248s] Masking low complexity seeds... [0.182s] Searching alignments... [346.528s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.015s] Building query seed array... [2.17s] Computing hash join... [5.274s] Masking low complexity seeds... [0.168s] Searching alignments... [263.817s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.435s] Building query seed array... [2.273s] Computing hash join... [5.384s] Masking low complexity seeds... [0.178s] Searching alignments... [193.267s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.225s] Building query seed array... [1.922s] Computing hash join... [5.314s] Masking low complexity seeds... [0.171s] Searching alignments... [203.139s] Deallocating memory... [0s] Deallocating buffers... [0.159s] Clearing query masking... [1.462s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.359s] Sorting trace points... [2.821s] Computing alignments... [92.98s] Deallocating buffers... [0.053s] Loading trace points... [0s] Sorting trace points... [2.752s] Computing alignments... [93.656s] Deallocating buffers... [0.191s] Loading trace points... [0.078s] Sorting trace points... [2.308s] Computing alignments... [90.689s] Deallocating buffers... [0.062s] Loading trace points... [0.001s] Sorting trace points... [2.72s] Computing alignments... [92.283s] Deallocating buffers... [0.07s] Loading trace points... [0.494s] Sorting trace points... [3.188s] Computing alignments... [92.29s] Deallocating buffers... [0.385s] Loading trace points... [0.069s] Sorting trace points... [2.057s] Computing alignments... [89.272s] Deallocating buffers... [0.061s] Loading trace points... [0.06s] Sorting trace points... [2.812s] Computing alignments... [90.062s] Deallocating buffers... [0.199s] Loading trace points... [0.073s] Sorting trace points... [2.278s] Computing alignments... [93.401s] Deallocating buffers... [0.221s] Loading trace points... [0.058s] Sorting trace points... [2.185s] Computing alignments... [91.046s] Deallocating buffers... [0.064s] Loading trace points... [0.039s] Sorting trace points... [2.352s] Computing alignments... [91.708s] Deallocating buffers... [0.06s] Loading trace points... [0.074s] Sorting trace points... [3.168s] Computing alignments... [92.54s] Deallocating buffers... [0.255s] Loading trace points... [0.089s] Sorting trace points... [2.242s] Computing alignments... [92.359s] Deallocating buffers... [0.059s] Loading trace points... [0.05s] Sorting trace points... [2.341s] Computing alignments... [92.336s] Deallocating buffers... [0.063s] Loading trace points... [0.084s] Sorting trace points... [2.796s] Computing alignments... [93.55s] Deallocating buffers... [0.072s] Loading trace points... [0.071s] Sorting trace points... [3.177s] Computing alignments... [88.328s] Deallocating buffers... [0.439s] Loading trace points... [0s] Sorting trace points... [2.583s] Computing alignments... [90.456s] Deallocating buffers... [0.06s] Loading trace points... [0s] [1526.79s] Deallocating reference... [0.084s] Loading reference sequences... [30.958s] Masking reference... [30.885s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.49s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.293s] Building query seed array... [2.234s] Computing hash join... [5.672s] Masking low complexity seeds... [0.188s] Searching alignments... [731.257s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.925s] Building query seed array... [2.951s] Computing hash join... [5.308s] Masking low complexity seeds... [0.19s] Searching alignments... [308.499s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.985s] Building query seed array... [2.83s] Computing hash join... [5.559s] Masking low complexity seeds... [0.191s] Searching alignments... [232.878s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.438s] Building query seed array... [2.422s] Computing hash join... [4.875s] Masking low complexity seeds... [0.184s] Searching alignments... [229.253s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.95s] Building query seed array... [2.087s] Computing hash join... [5.395s] Masking low complexity seeds... [0.192s] Searching alignments... [341.156s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.28s] Building query seed array... [2.38s] Computing hash join... [4.913s] Masking low complexity seeds... [0.168s] Searching alignments... [263.665s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.596s] Building query seed array... [2.392s] Computing hash join... [4.901s] Masking low complexity seeds... [0.176s] Searching alignments... [193.159s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.011s] Building query seed array... [2.13s] Computing hash join... [5.707s] Masking low complexity seeds... [0.19s] Searching alignments... [204.845s] Deallocating memory... [0s] Deallocating buffers... [0.954s] Clearing query masking... [1.406s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.389s] Sorting trace points... [3.007s] Computing alignments... [93.586s] Deallocating buffers... [0.06s] Loading trace points... [0.001s] Sorting trace points... [2.872s] Computing alignments... [93.82s] Deallocating buffers... [0.155s] Loading trace points... [0.035s] Sorting trace points... [2.028s] Computing alignments... [90.508s] Deallocating buffers... [0.059s] Loading trace points... [0.002s] Sorting trace points... [2.115s] Computing alignments... [93.455s] Deallocating buffers... [0.057s] Loading trace points... [0.074s] Sorting trace points... [3.068s] Computing alignments... [92.931s] Deallocating buffers... [0.171s] Loading trace points... [0.054s] Sorting trace points... [2.959s] Computing alignments... [89.851s] Deallocating buffers... [0.314s] Loading trace points... [0.062s] Sorting trace points... [2.604s] Computing alignments... [90.918s] Deallocating buffers... [0.062s] Loading trace points... [0.065s] Sorting trace points... [2.082s] Computing alignments... [94.053s] Deallocating buffers... [0.061s] Loading trace points... [0.078s] Sorting trace points... [2.913s] Computing alignments... [91.305s] Deallocating buffers... [0.243s] Loading trace points... [0.065s] Sorting trace points... [3.026s] Computing alignments... [92.451s] Deallocating buffers... [0.381s] Loading trace points... [0.067s] Sorting trace points... [3.023s] Computing alignments... [93.716s] Deallocating buffers... [0.246s] Loading trace points... [0.091s] Sorting trace points... [3.07s] Computing alignments... [92.489s] Deallocating buffers... [0.266s] Loading trace points... [0.066s] Sorting trace points... [2.187s] Computing alignments... [92.295s] Deallocating buffers... [0.069s] Loading trace points... [0.066s] Sorting trace points... [2.304s] Computing alignments... [93.667s] Deallocating buffers... [0.062s] Loading trace points... [0.094s] Sorting trace points... [2.641s] Computing alignments... [88.889s] Deallocating buffers... [0.051s] Loading trace points... [0s] Sorting trace points... [2.39s] Computing alignments... [90.922s] Deallocating buffers... [0.05s] Loading trace points... [0s] [1534.77s] Deallocating reference... [0.066s] Loading reference sequences... [33.472s] Masking reference... [31.102s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.206s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.116s] Building query seed array... [2.209s] Computing hash join... [5.546s] Masking low complexity seeds... [0.204s] Searching alignments... [737.702s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.535s] Building query seed array... [2.914s] Computing hash join... [5.197s] Masking low complexity seeds... [0.184s] Searching alignments... [307.726s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.661s] Building query seed array... [2.756s] Computing hash join... [5.371s] Masking low complexity seeds... [0.182s] Searching alignments... [229.15s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.013s] Building query seed array... [2.321s] Computing hash join... [5.27s] Masking low complexity seeds... [0.181s] Searching alignments... [230.169s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.069s] Building query seed array... [2.085s] Computing hash join... [5.028s] Masking low complexity seeds... [0.176s] Searching alignments... [352.717s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.46s] Building query seed array... [2.369s] Computing hash join... [5.291s] Masking low complexity seeds... [0.171s] Searching alignments... [263.008s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.041s] Building query seed array... [2.4s] Computing hash join... [4.894s] Masking low complexity seeds... [0.176s] Searching alignments... [192.713s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.967s] Building query seed array... [2.034s] Computing hash join... [5.1s] Masking low complexity seeds... [0.168s] Searching alignments... [203.363s] Deallocating memory... [0s] Deallocating buffers... [0.661s] Clearing query masking... [1.369s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.859s] Sorting trace points... [2.749s] Computing alignments... [88.236s] Deallocating buffers... [0.049s] Loading trace points... [0.093s] Sorting trace points... [2.938s] Computing alignments... [90.136s] Deallocating buffers... [0.321s] Loading trace points... [0.078s] Sorting trace points... [2.84s] Computing alignments... [87.126s] Deallocating buffers... [0.058s] Loading trace points... [0.084s] Sorting trace points... [3.078s] Computing alignments... [89.715s] Deallocating buffers... [0.319s] Loading trace points... [0.642s] Sorting trace points... [2.518s] Computing alignments... [88.819s] Deallocating buffers... [0.056s] Loading trace points... [0.065s] Sorting trace points... [2.717s] Computing alignments... [84.672s] Deallocating buffers... [0.135s] Loading trace points... [0.391s] Sorting trace points... [2.839s] Computing alignments... [85.961s] Deallocating buffers... [0.057s] Loading trace points... [0.09s] Sorting trace points... [2.891s] Computing alignments... [88.764s] Deallocating buffers... [0.058s] Loading trace points... [0.18s] Sorting trace points... [2.82s] Computing alignments... [86.87s] Deallocating buffers... [0.395s] Loading trace points... [0.076s] Sorting trace points... [2.762s] Computing alignments... [88.615s] Deallocating buffers... [0.057s] Loading trace points... [0.058s] Sorting trace points... [3.253s] Computing alignments... [89.263s] Deallocating buffers... [0.564s] Loading trace points... [0.07s] Sorting trace points... [2.906s] Computing alignments... [88.601s] Deallocating buffers... [0.146s] Loading trace points... [0.07s] Sorting trace points... [3.081s] Computing alignments... [87.921s] Deallocating buffers... [0.474s] Loading trace points... [0.052s] Sorting trace points... [2.809s] Computing alignments... [90.642s] Deallocating buffers... [0.074s] Loading trace points... [0.065s] Sorting trace points... [2.679s] Computing alignments... [85.25s] Deallocating buffers... [0.332s] Loading trace points... [0s] Sorting trace points... [2.762s] Computing alignments... [87.318s] Deallocating buffers... [0.127s] Loading trace points... [0s] [1473.78s] Deallocating reference... [0.074s] Loading reference sequences... [29.72s] Masking reference... [31.349s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.006s] Building reference histograms... [32.488s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.051s] Building query seed array... [2.201s] Computing hash join... [6.02s] Masking low complexity seeds... [0.193s] Searching alignments... [737.503s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.605s] Building query seed array... [2.65s] Computing hash join... [5.525s] Masking low complexity seeds... [0.198s] Searching alignments... [312.225s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.527s] Building query seed array... [2.881s] Computing hash join... [5.507s] Masking low complexity seeds... [0.185s] Searching alignments... [233.419s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.502s] Building query seed array... [2.481s] Computing hash join... [4.907s] Masking low complexity seeds... [0.186s] Searching alignments... [230.758s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.379s] Building query seed array... [2.159s] Computing hash join... [5.358s] Masking low complexity seeds... [0.196s] Searching alignments... [350.169s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.452s] Building query seed array... [2.263s] Computing hash join... [5.537s] Masking low complexity seeds... [0.163s] Searching alignments... [264.256s] Deallocating memory... [0.005s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.083s] Building query seed array... [2.361s] Computing hash join... [4.928s] Masking low complexity seeds... [0.187s] Searching alignments... [195.353s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.231s] Building query seed array... [2.174s] Computing hash join... [5.222s] Masking low complexity seeds... [0.177s] Searching alignments... [203.644s] Deallocating memory... [0s] Deallocating buffers... [1.272s] Clearing query masking... [1.429s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [14.404s] Sorting trace points... [2.788s] Computing alignments... [90.918s] Deallocating buffers... [0.101s] Loading trace points... [0.049s] Sorting trace points... [2.806s] Computing alignments... [91.405s] Deallocating buffers... [0.231s] Loading trace points... [0.068s] Sorting trace points... [2.644s] Computing alignments... [88.868s] Deallocating buffers... [0.105s] Loading trace points... [0.047s] Sorting trace points... [2.094s] Computing alignments... [90.817s] Deallocating buffers... [0.088s] Loading trace points... [0.044s] Sorting trace points... [2.223s] Computing alignments... [90.509s] Deallocating buffers... [0.076s] Loading trace points... [0.079s] Sorting trace points... [2.773s] Computing alignments... [86.182s] Deallocating buffers... [0.093s] Loading trace points... [0.871s] Sorting trace points... [2.244s] Computing alignments... [87.458s] Deallocating buffers... [0.15s] Loading trace points... [0s] Sorting trace points... [2.401s] Computing alignments... [90.571s] Deallocating buffers... [0.104s] Loading trace points... [0.08s] Sorting trace points... [2.803s] Computing alignments... [89.02s] Deallocating buffers... [0.094s] Loading trace points... [0.053s] Sorting trace points... [2.552s] Computing alignments... [89.439s] Deallocating buffers... [0.097s] Loading trace points... [0.085s] Sorting trace points... [3.029s] Computing alignments... [91.005s] Deallocating buffers... [0.394s] Loading trace points... [0.036s] Sorting trace points... [2.885s] Computing alignments... [89.466s] Deallocating buffers... [0.09s] Loading trace points... [0.047s] Sorting trace points... [2.118s] Computing alignments... [89.671s] Deallocating buffers... [0.14s] Loading trace points... [0.08s] Sorting trace points... [2.323s] Computing alignments... [91.137s] Deallocating buffers... [0.085s] Loading trace points... [0.092s] Sorting trace points... [2.374s] Computing alignments... [87.13s] Deallocating buffers... [0.098s] Loading trace points... [0s] Sorting trace points... [3.054s] Computing alignments... [88.412s] Deallocating buffers... [0.363s] Loading trace points... [0s] [1491.59s] Deallocating reference... [0.064s] Loading reference sequences... [29.071s] Masking reference... [30.868s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.337s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.182s] Building query seed array... [2.142s] Computing hash join... [5.393s] Masking low complexity seeds... [0.184s] Searching alignments... [742.655s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.46s] Building query seed array... [2.974s] Computing hash join... [4.883s] Masking low complexity seeds... [0.17s] Searching alignments... [307.597s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.518s] Building query seed array... [2.729s] Computing hash join... [5.656s] Masking low complexity seeds... [0.199s] Searching alignments... [230.196s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.083s] Building query seed array... [2.325s] Computing hash join... [5.456s] Masking low complexity seeds... [0.194s] Searching alignments... [227.964s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.927s] Building query seed array... [2.177s] Computing hash join... [5.466s] Masking low complexity seeds... [0.175s] Searching alignments... [348.492s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.455s] Building query seed array... [2.327s] Computing hash join... [5.036s] Masking low complexity seeds... [0.175s] Searching alignments... [269.274s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.164s] Building query seed array... [2.451s] Computing hash join... [4.724s] Masking low complexity seeds... [0.168s] Searching alignments... [192.624s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.101s] Building query seed array... [2.165s] Computing hash join... [5.26s] Masking low complexity seeds... [0.175s] Searching alignments... [204.938s] Deallocating memory... [0s] Deallocating buffers... [0.838s] Clearing query masking... [1.422s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.508s] Sorting trace points... [2.757s] Computing alignments... [81.069s] Deallocating buffers... [0.064s] Loading trace points... [0s] Sorting trace points... [2.612s] Computing alignments... [81.603s] Deallocating buffers... [0.05s] Loading trace points... [0.054s] Sorting trace points... [2.855s] Computing alignments... [79.917s] Deallocating buffers... [0.041s] Loading trace points... [0.001s] Sorting trace points... [3.343s] Computing alignments... [82.389s] Deallocating buffers... [0.562s] Loading trace points... [0.085s] Sorting trace points... [2.288s] Computing alignments... [80.698s] Deallocating buffers... [0.064s] Loading trace points... [0.058s] Sorting trace points... [2.8s] Computing alignments... [78.307s] Deallocating buffers... [0.068s] Loading trace points... [0.082s] Sorting trace points... [2.654s] Computing alignments... [79.463s] Deallocating buffers... [0.059s] Loading trace points... [0.067s] Sorting trace points... [3.493s] Computing alignments... [81.982s] Deallocating buffers... [0.609s] Loading trace points... [0.088s] Sorting trace points... [2.084s] Computing alignments... [79.83s] Deallocating buffers... [0.064s] Loading trace points... [0.001s] Sorting trace points... [2.981s] Computing alignments... [81.317s] Deallocating buffers... [0.267s] Loading trace points... [0.085s] Sorting trace points... [2.349s] Computing alignments... [81.547s] Deallocating buffers... [0.06s] Loading trace points... [0.07s] Sorting trace points... [3.276s] Computing alignments... [82.145s] Deallocating buffers... [0.235s] Loading trace points... [0.06s] Sorting trace points... [2.911s] Computing alignments... [80.384s] Deallocating buffers... [0.17s] Loading trace points... [0.213s] Sorting trace points... [2.995s] Computing alignments... [82.56s] Deallocating buffers... [0.087s] Loading trace points... [0.12s] Sorting trace points... [3.287s] Computing alignments... [79.339s] Deallocating buffers... [0.627s] Loading trace points... [0s] Sorting trace points... [2.739s] Computing alignments... [80.001s] Deallocating buffers... [0.062s] Loading trace points... [0s] [1356.74s] Deallocating reference... [0.064s] Loading reference sequences... [29.292s] Masking reference... [30.885s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [32.518s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.306s] Building query seed array... [2.142s] Computing hash join... [5.677s] Masking low complexity seeds... [0.179s] Searching alignments... [735.245s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.701s] Building query seed array... [2.601s] Computing hash join... [5.747s] Masking low complexity seeds... [0.207s] Searching alignments... [313.719s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.285s] Building query seed array... [2.809s] Computing hash join... [5.208s] Masking low complexity seeds... [0.181s] Searching alignments... [231.436s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.278s] Building query seed array... [2.223s] Computing hash join... [5.532s] Masking low complexity seeds... [0.208s] Searching alignments... [234.343s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.118s] Building query seed array... [2.088s] Computing hash join... [4.8s] Masking low complexity seeds... [0.164s] Searching alignments... [350.187s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.309s] Building query seed array... [2.295s] Computing hash join... [4.835s] Masking low complexity seeds... [0.185s] Searching alignments... [264.831s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.411s] Building query seed array... [2.388s] Computing hash join... [5.609s] Masking low complexity seeds... [0.182s] Searching alignments... [193.679s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.995s] Building query seed array... [2.027s] Computing hash join... [4.822s] Masking low complexity seeds... [0.165s] Searching alignments... [206.496s] Deallocating memory... [0s] Deallocating buffers... [1.119s] Clearing query masking... [1.4s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [14.619s] Sorting trace points... [2.912s] Computing alignments... [98.919s] Deallocating buffers... [0.201s] Loading trace points... [0.059s] Sorting trace points... [2.358s] Computing alignments... [98.78s] Deallocating buffers... [0.294s] Loading trace points... [0.068s] Sorting trace points... [2.852s] Computing alignments... [94.82s] Deallocating buffers... [0.191s] Loading trace points... [0.055s] Sorting trace points... [2.631s] Computing alignments... [98.292s] Deallocating buffers... [0.21s] Loading trace points... [0.051s] Sorting trace points... [2.816s] Computing alignments... [97.554s] Deallocating buffers... [0.125s] Loading trace points... [0.081s] Sorting trace points... [2.074s] Computing alignments... [92.916s] Deallocating buffers... [0.112s] Loading trace points... [0.001s] Sorting trace points... [2.018s] Computing alignments... [95.481s] Deallocating buffers... [0.07s] Loading trace points... [0.243s] Sorting trace points... [2.831s] Computing alignments... [98.149s] Deallocating buffers... [0.201s] Loading trace points... [0.061s] Sorting trace points... [2.274s] Computing alignments... [95.683s] Deallocating buffers... [0.12s] Loading trace points... [0.056s] Sorting trace points... [2.475s] Computing alignments... [95.875s] Deallocating buffers... [0.076s] Loading trace points... [0.049s] Sorting trace points... [2.847s] Computing alignments... [96.708s] Deallocating buffers... [0.069s] Loading trace points... [0.192s] Sorting trace points... [2.611s] Computing alignments... [97.388s] Deallocating buffers... [0.34s] Loading trace points... [0.07s] Sorting trace points... [2.301s] Computing alignments... [96.889s] Deallocating buffers... [0.087s] Loading trace points... [0.067s] Sorting trace points... [2.582s] Computing alignments... [98.754s] Deallocating buffers... [0.325s] Loading trace points... [0.057s] Sorting trace points... [2.082s] Computing alignments... [94.59s] Deallocating buffers... [0.09s] Loading trace points... [0s] Sorting trace points... [2.058s] Computing alignments... [96.468s] Deallocating buffers... [0.079s] Loading trace points... [0s] [1605.44s] Deallocating reference... [0.077s] Loading reference sequences... [250.054s] Masking reference... [31.803s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.464s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.265s] Building query seed array... [2.157s] Computing hash join... [5.424s] Masking low complexity seeds... [0.183s] Searching alignments... [732.851s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.767s] Building query seed array... [2.613s] Computing hash join... [5.55s] Masking low complexity seeds... [0.181s] Searching alignments... [309.828s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.902s] Building query seed array... [2.528s] Computing hash join... [5.34s] Masking low complexity seeds... [0.209s] Searching alignments... [231.635s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.381s] Building query seed array... [2.158s] Computing hash join... [5.324s] Masking low complexity seeds... [0.181s] Searching alignments... [234.914s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.867s] Building query seed array... [1.928s] Computing hash join... [5.27s] Masking low complexity seeds... [0.175s] Searching alignments... [352.292s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.92s] Building query seed array... [2.242s] Computing hash join... [5.269s] Masking low complexity seeds... [0.18s] Searching alignments... [264.489s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.977s] Building query seed array... [2.348s] Computing hash join... [5.216s] Masking low complexity seeds... [0.165s] Searching alignments... [195.666s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.953s] Building query seed array... [1.924s] Computing hash join... [5.263s] Masking low complexity seeds... [0.168s] Searching alignments... [201.95s] Deallocating memory... [0s] Deallocating buffers... [0.321s] Clearing query masking... [1.446s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [15.301s] Sorting trace points... [2.819s] Computing alignments... [95.045s] Deallocating buffers... [0.092s] Loading trace points... [0.078s] Sorting trace points... [2.945s] Computing alignments... [95.972s] Deallocating buffers... [0.092s] Loading trace points... [0.001s] Sorting trace points... [2.629s] Computing alignments... [92.684s] Deallocating buffers... [0.301s] Loading trace points... [0.087s] Sorting trace points... [2.571s] Computing alignments... [95.533s] Deallocating buffers... [0.09s] Loading trace points... [0.095s] Sorting trace points... [2.092s] Computing alignments... [94.929s] Deallocating buffers... [0.071s] Loading trace points... [0.051s] Sorting trace points... [2.578s] Computing alignments... [90.067s] Deallocating buffers... [0.091s] Loading trace points... [0.058s] Sorting trace points... [2.443s] Computing alignments... [92.506s] Deallocating buffers... [0.187s] Loading trace points... [0.076s] Sorting trace points... [2.124s] Computing alignments... [95.87s] Deallocating buffers... [0.087s] Loading trace points... [0.08s] Sorting trace points... [2.792s] Computing alignments... [93.925s] Deallocating buffers... [0.087s] Loading trace points... [0.072s] Sorting trace points... [2.242s] Computing alignments... [94.01s] Deallocating buffers... [0.099s] Loading trace points... [0.062s] Sorting trace points... [2.948s] Computing alignments... [95.155s] Deallocating buffers... [0.109s] Loading trace points... [0.077s] Sorting trace points... [2.901s] Computing alignments... [94.961s] Deallocating buffers... [0.302s] Loading trace points... [0.001s] Sorting trace points... [2.841s] Computing alignments... [94.787s] Deallocating buffers... [0.105s] Loading trace points... [0.076s] Sorting trace points... [2.349s] Computing alignments... [95.524s] Deallocating buffers... [0.183s] Loading trace points... [0.095s] Sorting trace points... [2.207s] Computing alignments... [91.228s] Deallocating buffers... [0.102s] Loading trace points... [0s] Sorting trace points... [2.004s] Computing alignments... [93.494s] Deallocating buffers... [0.1s] Loading trace points... [0s] [1564.62s] Deallocating reference... [0.079s] Loading reference sequences... [31s] Masking reference... [31.01s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [32.801s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.219s] Building query seed array... [2.09s] Computing hash join... [5.331s] Masking low complexity seeds... [0.185s] Searching alignments... [735.924s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.126s] Building query seed array... [2.331s] Computing hash join... [5.704s] Masking low complexity seeds... [0.185s] Searching alignments... [311.529s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.659s] Building query seed array... [2.495s] Computing hash join... [5.701s] Masking low complexity seeds... [0.189s] Searching alignments... [231.56s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.094s] Building query seed array... [2.061s] Computing hash join... [5.555s] Masking low complexity seeds... [0.181s] Searching alignments... [229.049s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.225s] Building query seed array... [1.916s] Computing hash join... [5.652s] Masking low complexity seeds... [0.183s] Searching alignments... [343.78s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.288s] Building query seed array... [2.078s] Computing hash join... [5.67s] Masking low complexity seeds... [0.182s] Searching alignments... [262.604s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.949s] Building query seed array... [2.256s] Computing hash join... [5.581s] Masking low complexity seeds... [0.17s] Searching alignments... [193.489s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.179s] Building query seed array... [1.906s] Computing hash join... [5.517s] Masking low complexity seeds... [0.166s] Searching alignments... [205.517s] Deallocating memory... [0s] Deallocating buffers... [0.166s] Clearing query masking... [1.481s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [14.308s] Sorting trace points... [2.768s] Computing alignments... [89.025s] Deallocating buffers... [0.05s] Loading trace points... [0.044s] Sorting trace points... [3.097s] Computing alignments... [90.568s] Deallocating buffers... [0.376s] Loading trace points... [0.049s] Sorting trace points... [2.965s] Computing alignments... [87.083s] Deallocating buffers... [0.234s] Loading trace points... [0.045s] Sorting trace points... [3.325s] Computing alignments... [89.705s] Deallocating buffers... [0.383s] Loading trace points... [0.002s] Sorting trace points... [2.172s] Computing alignments... [91.255s] Deallocating buffers... [0.062s] Loading trace points... [0.058s] Sorting trace points... [2.804s] Computing alignments... [86.167s] Deallocating buffers... [0.057s] Loading trace points... [0.06s] Sorting trace points... [3.043s] Computing alignments... [87.376s] Deallocating buffers... [0.353s] Loading trace points... [0.084s] Sorting trace points... [2.132s] Computing alignments... [89.546s] Deallocating buffers... [0.055s] Loading trace points... [0.07s] Sorting trace points... [2.257s] Computing alignments... [90.062s] Deallocating buffers... [0.155s] Loading trace points... [0.041s] Sorting trace points... [2.746s] Computing alignments... [88.627s] Deallocating buffers... [0.055s] Loading trace points... [0.069s] Sorting trace points... [2.89s] Computing alignments... [88.876s] Deallocating buffers... [0.068s] Loading trace points... [0.043s] Sorting trace points... [3.59s] Computing alignments... [90.856s] Deallocating buffers... [0.655s] Loading trace points... [0.781s] Sorting trace points... [2.733s] Computing alignments... [88.818s] Deallocating buffers... [0.065s] Loading trace points... [0.059s] Sorting trace points... [2.078s] Computing alignments... [89.727s] Deallocating buffers... [0.052s] Loading trace points... [0.077s] Sorting trace points... [2.292s] Computing alignments... [86.014s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [2.042s] Computing alignments... [87.416s] Deallocating buffers... [0.063s] Loading trace points... [0s] [1482.72s] Deallocating reference... [0.085s] Loading reference sequences... [23.285s] Masking reference... [25.004s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.005s] Building reference histograms... [26.256s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.35s] Building query seed array... [2.187s] Computing hash join... [4.462s] Masking low complexity seeds... [0.169s] Searching alignments... [593.716s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.056s] Building query seed array... [2.963s] Computing hash join... [4.485s] Masking low complexity seeds... [0.2s] Searching alignments... [249.043s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.757s] Building query seed array... [2.67s] Computing hash join... [4.124s] Masking low complexity seeds... [0.168s] Searching alignments... [186.437s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.088s] Building query seed array... [2.269s] Computing hash join... [4.052s] Masking low complexity seeds... [0.174s] Searching alignments... [185.516s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.243s] Building query seed array... [2.056s] Computing hash join... [4.066s] Masking low complexity seeds... [0.162s] Searching alignments... [280.881s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.137s] Building query seed array... [2.319s] Computing hash join... [4.009s] Masking low complexity seeds... [0.191s] Searching alignments... [212.205s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.603s] Building query seed array... [2.469s] Computing hash join... [3.959s] Masking low complexity seeds... [0.185s] Searching alignments... [158.192s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.165s] Building query seed array... [2.127s] Computing hash join... [3.963s] Masking low complexity seeds... [0.151s] Searching alignments... [163.723s] Deallocating memory... [0s] Deallocating buffers... [0.746s] Clearing query masking... [1.536s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.858s] Sorting trace points... [2.299s] Computing alignments... [69.362s] Deallocating buffers... [0.046s] Loading trace points... [0.054s] Sorting trace points... [1.642s] Computing alignments... [70.686s] Deallocating buffers... [0.043s] Loading trace points... [0.074s] Sorting trace points... [1.674s] Computing alignments... [68.58s] Deallocating buffers... [0.044s] Loading trace points... [0.05s] Sorting trace points... [2.243s] Computing alignments... [70.261s] Deallocating buffers... [0.047s] Loading trace points... [0.064s] Sorting trace points... [1.872s] Computing alignments... [69.309s] Deallocating buffers... [0.029s] Loading trace points... [0.106s] Sorting trace points... [2.274s] Computing alignments... [66.286s] Deallocating buffers... [0.04s] Loading trace points... [0.07s] Sorting trace points... [2.031s] Computing alignments... [67.265s] Deallocating buffers... [0.045s] Loading trace points... [0.002s] Sorting trace points... [2.364s] Computing alignments... [69.621s] Deallocating buffers... [0.043s] Loading trace points... [0.002s] Sorting trace points... [2.107s] Computing alignments... [68.785s] Deallocating buffers... [0.059s] Loading trace points... [0.001s] Sorting trace points... [1.902s] Computing alignments... [69.546s] Deallocating buffers... [0.042s] Loading trace points... [0.052s] Sorting trace points... [1.716s] Computing alignments... [69.415s] Deallocating buffers... [0.044s] Loading trace points... [0.065s] Sorting trace points... [2.351s] Computing alignments... [69.596s] Deallocating buffers... [0.051s] Loading trace points... [0.054s] Sorting trace points... [1.894s] Computing alignments... [68.474s] Deallocating buffers... [0.041s] Loading trace points... [0.097s] Sorting trace points... [1.7s] Computing alignments... [70.541s] Deallocating buffers... [0.044s] Loading trace points... [0.001s] Sorting trace points... [2.076s] Computing alignments... [66.25s] Deallocating buffers... [0.045s] Loading trace points... [0s] Sorting trace points... [1.999s] Computing alignments... [67.801s] Deallocating buffers... [0.041s] Loading trace points... [0s] [1147.34s] Deallocating reference... [0.062s] Loading reference sequences... [0.083s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [5453.11s] [5453.11s] Deallocating queries... [0.053s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.04s] [3.845s] Closing the database... [0s] Cleaning up... [0s] Total time = 65267.4s Reported 5902561781 pairwise alignments, 5902561781 HSPs. 5326628 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-06.trimmed.R2.fastq.gz complete: CH07-06.trimmed.R2.blastx.meganized.daa Now MEGANizing CH07-06.trimmed.R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: CH07-06.trimmed.R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 100% (350.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9,169.4s) Total reads: 5,326,628 With hits: 5,326,628 Alignments: 4,014,647,182 Assig. Taxonomy: 3,079,815 Assig. SEED: 137,352 Assig. EGGNOG: 66,078 Assig. GTDB: 350,814 Assig. EC: 506,967 Assig. INTERPRO2GO: 1,399,459 MinSupport set to: 2663 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 5,755 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (18.2s) Min-supp. changes: 3,934 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.8s) Binning reads Syncing 100% (1.2s) Class. Taxonomy: 166 Class. SEED: 499 Class. EGGNOG: 1,723 Class. GTDB: 61 Class. EC: 2,360 Class. INTERPRO2GO: 8,760 Total time: 9,560s Peak memory: 36.6 of 195.3G MEGANization of CH07-06.trimmed.R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R1.fastq.gz... ef6519d7c6bf53d00b29f724b2dc8cf7 /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R1.fastq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/M_magister/RNAseq/trimmed/CH07-08.trimmed.R1.fastq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.297s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.775s] Opening the output file... [0s] Loading query sequences... [130.456s] Masking queries... [33.247s] Algorithm: Double-indexed Building query histograms... [26.918s] Loading reference sequences... [29.246s] Masking reference... [30.874s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.66s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.641s] Building query seed array... [3.103s] Computing hash join... [6.347s] Masking low complexity seeds... [0.219s] Searching alignments... [1901.97s] Deallocating memory... [0.012s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.239s] Building query seed array... [3.746s] Computing hash join... [5.707s] Masking low complexity seeds... [0.213s] Searching alignments... [827.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.242s] Building query seed array... [3.746s] Computing hash join... [5.794s] Masking low complexity seeds... [0.202s] Searching alignments... [613.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.642s] Building query seed array... [3.179s] Computing hash join... [5.695s] Masking low complexity seeds... [0.217s] Searching alignments... [622.291s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.089s] Building query seed array... [2.941s] Computing hash join... [5.496s] Masking low complexity seeds... [0.207s] Searching alignments... [872.253s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.462s] Building query seed array... [3.275s] Computing hash join... [5.531s] Masking low complexity seeds... [0.194s] Searching alignments... [663.999s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.543s] Building query seed array... [3.481s] Computing hash join... [5.716s] Masking low complexity seeds... [0.206s] Searching alignments... [484.146s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.935s] Building query seed array... [2.974s] Computing hash join... [5.576s] Masking low complexity seeds... [0.209s] Searching alignments... [504.75s] Deallocating memory... [0s] Deallocating buffers... [1.14s] Clearing query masking... [2.023s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.143s] Sorting trace points... [9.397s] Computing alignments... [215.195s] Deallocating buffers... [1.196s] Loading trace points... Warning: resident size (113341556437) exceeds memory limit. [0.083s] Sorting trace points... [9.701s] Computing alignments... [219.904s] Deallocating buffers... [1.372s] Loading trace points... Warning: resident size (114489268372) exceeds memory limit. [0.062s] Sorting trace points... [9.465s] Computing alignments... [221.919s] Deallocating buffers... [1.322s] Loading trace points... Warning: resident size (116640882217) exceeds memory limit. [0.094s] Sorting trace points... [9.737s] Computing alignments... [228.677s] Deallocating buffers... [1.465s] Loading trace points... Warning: resident size (116301625702) exceeds memory limit. [0.071s] Sorting trace points... [9.188s] Computing alignments... [219.585s] Deallocating buffers... [1.829s] Loading trace points... Warning: resident size (113931268342) exceeds memory limit. [0.049s] Sorting trace points... [7.879s] Computing alignments... [219.687s] Deallocating buffers... [1.1s] Loading trace points... Warning: resident size (114173596447) exceeds memory limit. [0.073s] Sorting trace points... [9.283s] Computing alignments... [219.743s] Deallocating buffers... [1.498s] Loading trace points... Warning: resident size (115941769942) exceeds memory limit. [0.041s] Sorting trace points... [8.139s] Computing alignments... [228.59s] Deallocating buffers... [1.27s] Loading trace points... Warning: resident size (115788171247) exceeds memory limit. [0.057s] Sorting trace points... [7.923s] Computing alignments... [221.301s] Deallocating buffers... [1.283s] Loading trace points... Warning: resident size (114793351762) exceeds memory limit. [0.066s] Sorting trace points... [8.037s] Computing alignments... [221.791s] Deallocating buffers... [1.421s] Loading trace points... Warning: resident size (115694488132) exceeds memory limit. [0.078s] Sorting trace points... [8.789s] Computing alignments... [224.863s] Deallocating buffers... [1.293s] Loading trace points... Warning: resident size (117605975167) exceeds memory limit. [0.062s] Sorting trace points... [8.71s] Computing alignments... [233.582s] Deallocating buffers... [1.456s] Loading trace points... Warning: resident size (117047599822) exceeds memory limit. [0.059s] Sorting trace points... [8.402s] Computing alignments... [222.538s] Deallocating buffers... [1.295s] Loading trace points... Warning: resident size (115287502537) exceeds memory limit. [0.414s] Sorting trace points... [8.548s] Computing alignments... [222.436s] Deallocating buffers... [1.379s] Loading trace points... Warning: resident size (115567154362) exceeds memory limit. [0.049s] Sorting trace points... [8.528s] Computing alignments... [224.845s] Deallocating buffers... [1.304s] Loading trace points... Warning: resident size (116843837542) exceeds memory limit. [0s] Sorting trace points... [9.412s] Computing alignments... [227.181s] Deallocating buffers... [1.584s] Loading trace points... [0s] [3774.55s] Deallocating reference... [0.063s] Loading reference sequences... [30.03s] Masking reference... [30.958s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.484s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.52s] Building query seed array... [3.168s] Computing hash join... [5.924s] Masking low complexity seeds... [0.209s] Searching alignments... [1857.69s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.832s] Building query seed array... [4.179s] Computing hash join... [5.42s] Masking low complexity seeds... [0.195s] Searching alignments... [811.459s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.536s] Building query seed array... [3.909s] Computing hash join... [5.752s] Masking low complexity seeds... [0.201s] Searching alignments... [597.475s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.339s] Building query seed array... [3.352s] Computing hash join... [6.008s] Masking low complexity seeds... [0.259s] Searching alignments... [612.75s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.302s] Building query seed array... [3.031s] Computing hash join... [5.953s] Masking low complexity seeds... [0.215s] Searching alignments... [855.299s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.369s] Building query seed array... [3.459s] Computing hash join... [5.644s] Masking low complexity seeds... [0.208s] Searching alignments... [666.919s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.39s] Building query seed array... [3.568s] Computing hash join... [5.335s] Masking low complexity seeds... [0.239s] Searching alignments... [488.067s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.078s] Building query seed array... [2.987s] Computing hash join... [5.295s] Masking low complexity seeds... [0.183s] Searching alignments... [500.52s] Deallocating memory... [0s] Deallocating buffers... [1.482s] Clearing query masking... [2.189s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [36.142s] Sorting trace points... [5.82s] Computing alignments... [230.084s] Deallocating buffers... [0.419s] Loading trace points... Warning: resident size (112845305257) exceeds memory limit. [0.061s] Sorting trace points... [11.66s] Computing alignments... [233.612s] Deallocating buffers... [2.597s] Loading trace points... Warning: resident size (113991018532) exceeds memory limit. [0.064s] Sorting trace points... [5.897s] Computing alignments... [238.348s] Deallocating buffers... [0.4s] Loading trace points... Warning: resident size (116134574452) exceeds memory limit. [0.092s] Sorting trace points... [11.683s] Computing alignments... [244.694s] Deallocating buffers... [2.574s] Loading trace points... Warning: resident size (115793869282) exceeds memory limit. [0.055s] Sorting trace points... [7.191s] Computing alignments... [235.667s] Deallocating buffers... [0.788s] Loading trace points... Warning: resident size (113434146667) exceeds memory limit. [0.071s] Sorting trace points... [10.639s] Computing alignments... [232.831s] Deallocating buffers... [2.224s] Loading trace points... Warning: resident size (113679950977) exceeds memory limit. [0.073s] Sorting trace points... [6.049s] Computing alignments... [234.586s] Deallocating buffers... [0.716s] Loading trace points... Warning: resident size (115438713232) exceeds memory limit. [0.814s] Sorting trace points... [9.376s] Computing alignments... [246.713s] Deallocating buffers... [2.152s] Loading trace points... Warning: resident size (115283317582) exceeds memory limit. [0.087s] Sorting trace points... [7.375s] Computing alignments... [236.051s] Deallocating buffers... [0.673s] Loading trace points... Warning: resident size (114292573822) exceeds memory limit. [0.088s] Sorting trace points... [9.292s] Computing alignments... [234.601s] Deallocating buffers... [1.984s] Loading trace points... Warning: resident size (115186996207) exceeds memory limit. [0.079s] Sorting trace points... [7.076s] Computing alignments... [239.453s] Deallocating buffers... [0.79s] Loading trace points... Warning: resident size (117087930742) exceeds memory limit. [0.095s] Sorting trace points... [11.827s] Computing alignments... [252.048s] Deallocating buffers... [2.291s] Loading trace points... Warning: resident size (116531803282) exceeds memory limit. [0.059s] Sorting trace points... [7.838s] Computing alignments... [237.505s] Deallocating buffers... [0.859s] Loading trace points... Warning: resident size (114782090122) exceeds memory limit. [0.065s] Sorting trace points... [9.195s] Computing alignments... [239.533s] Deallocating buffers... [1.938s] Loading trace points... Warning: resident size (115062106657) exceeds memory limit. [0.058s] Sorting trace points... [7.564s] Computing alignments... [239.62s] Deallocating buffers... [0.859s] Loading trace points... Warning: resident size (116334287482) exceeds memory limit. [0s] Sorting trace points... [8.809s] Computing alignments... [239.248s] Deallocating buffers... [2.003s] Loading trace points... [0s] [4013.23s] Deallocating reference... [0.076s] Loading reference sequences... [29.58s] Masking reference... [31.813s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.193s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.046s] Building query seed array... [3.043s] Computing hash join... [5.936s] Masking low complexity seeds... [0.212s] Searching alignments... [1879.03s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.35s] Building query seed array... [4.126s] Computing hash join... [6.156s] Masking low complexity seeds... [0.203s] Searching alignments... [813.096s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.651s] Building query seed array... [3.783s] Computing hash join... [6.598s] Masking low complexity seeds... [0.205s] Searching alignments... [596.643s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.17s] Building query seed array... [3.193s] Computing hash join... [6.419s] Masking low complexity seeds... [0.207s] Searching alignments... [614.388s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.021s] Building query seed array... [2.906s] Computing hash join... [6.133s] Masking low complexity seeds... [0.204s] Searching alignments... [872.63s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.641s] Building query seed array... [3.443s] Computing hash join... [6.293s] Masking low complexity seeds... [0.235s] Searching alignments... [656.58s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.894s] Building query seed array... [3.551s] Computing hash join... [6.092s] Masking low complexity seeds... [0.194s] Searching alignments... [484.647s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.253s] Building query seed array... [3.081s] Computing hash join... [6.415s] Masking low complexity seeds... [0.201s] Searching alignments... [496.762s] Deallocating memory... [0s] Deallocating buffers... [0.764s] Clearing query masking... [2.13s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.663s] Sorting trace points... [5.735s] Computing alignments... [230.448s] Deallocating buffers... [0.607s] Loading trace points... Warning: resident size (112602433155) exceeds memory limit. [0.07s] Sorting trace points... [10.328s] Computing alignments... [235.395s] Deallocating buffers... [2.085s] Loading trace points... Warning: resident size (113736449715) exceeds memory limit. [0.056s] Sorting trace points... [7.541s] Computing alignments... [234.82s] Deallocating buffers... [0.821s] Loading trace points... Warning: resident size (115867864665) exceeds memory limit. [0.094s] Sorting trace points... [10.384s] Computing alignments... [240.759s] Deallocating buffers... [1.947s] Loading trace points... Warning: resident size (115532246040) exceeds memory limit. [0.068s] Sorting trace points... [8.725s] Computing alignments... [234.469s] Deallocating buffers... [1.134s] Loading trace points... Warning: resident size (113185318590) exceeds memory limit. [0.074s] Sorting trace points... [9.024s] Computing alignments... [232.299s] Deallocating buffers... [1.594s] Loading trace points... Warning: resident size (113425427205) exceeds memory limit. [0.077s] Sorting trace points... [8.012s] Computing alignments... [232.969s] Deallocating buffers... [1.143s] Loading trace points... Warning: resident size (115175400555) exceeds memory limit. [0.06s] Sorting trace points... [9.914s] Computing alignments... [246.819s] Deallocating buffers... [1.717s] Loading trace points... Warning: resident size (115022404905) exceeds memory limit. [0.085s] Sorting trace points... [8.66s] Computing alignments... [233.682s] Deallocating buffers... [1.113s] Loading trace points... Warning: resident size (114038887710) exceeds memory limit. [0.079s] Sorting trace points... [8.837s] Computing alignments... [234.168s] Deallocating buffers... [1.712s] Loading trace points... Warning: resident size (114928917630) exceeds memory limit. [0.072s] Sorting trace points... [8.526s] Computing alignments... [238.182s] Deallocating buffers... [1.131s] Loading trace points... Warning: resident size (116820758985) exceeds memory limit. [0.06s] Sorting trace points... [8.457s] Computing alignments... [248.534s] Deallocating buffers... [1.714s] Loading trace points... Warning: resident size (116271009060) exceeds memory limit. [0.059s] Sorting trace points... [7.419s] Computing alignments... [236.969s] Deallocating buffers... [1.07s] Loading trace points... Warning: resident size (114527547315) exceeds memory limit. [0.084s] Sorting trace points... [8.587s] Computing alignments... [238.78s] Deallocating buffers... [1.669s] Loading trace points... Warning: resident size (114805193220) exceeds memory limit. [0.096s] Sorting trace points... [7.688s] Computing alignments... [237.091s] Deallocating buffers... [1.118s] Loading trace points... Warning: resident size (116068524570) exceeds memory limit. [0s] Sorting trace points... [9.238s] Computing alignments... [236.29s] Deallocating buffers... [1.756s] Loading trace points... [0s] [3990.91s] Deallocating reference... [0.07s] Loading reference sequences... [29.251s] Masking reference... [30.885s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.275s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.477s] Building query seed array... [3.135s] Computing hash join... [6.16s] Masking low complexity seeds... [0.217s] Searching alignments... [1874.42s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.402s] Building query seed array... [4.053s] Computing hash join... [5.987s] Masking low complexity seeds... [0.21s] Searching alignments... [825.073s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.088s] Building query seed array... [3.784s] Computing hash join... [5.773s] Masking low complexity seeds... [0.205s] Searching alignments... [598.663s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.532s] Building query seed array... [3.299s] Computing hash join... [5.966s] Masking low complexity seeds... [0.208s] Searching alignments... [620.034s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.342s] Building query seed array... [2.969s] Computing hash join... [5.793s] Masking low complexity seeds... [0.185s] Searching alignments... [871.26s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.278s] Building query seed array... [3.494s] Computing hash join... [5.599s] Masking low complexity seeds... [0.203s] Searching alignments... [672.319s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.85s] Building query seed array... [3.322s] Computing hash join... [5.914s] Masking low complexity seeds... [0.202s] Searching alignments... [488.272s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.144s] Building query seed array... [2.952s] Computing hash join... [5.769s] Masking low complexity seeds... [0.206s] Searching alignments... [494.691s] Deallocating memory... [0s] Deallocating buffers... [1.102s] Clearing query masking... [1.977s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.923s] Sorting trace points... [6.167s] Computing alignments... [224.882s] Deallocating buffers... [0.513s] Loading trace points... Warning: resident size (113200327954) exceeds memory limit. [0.056s] Sorting trace points... [12.238s] Computing alignments... [228.373s] Deallocating buffers... [2.454s] Loading trace points... Warning: resident size (114341977669) exceeds memory limit. [0.001s] Sorting trace points... [6.149s] Computing alignments... [229.693s] Deallocating buffers... [0.486s] Loading trace points... Warning: resident size (116489439214) exceeds memory limit. [0.054s] Sorting trace points... [10.841s] Computing alignments... [235.583s] Deallocating buffers... [2.38s] Loading trace points... Warning: resident size (116151578614) exceeds memory limit. [0.074s] Sorting trace points... [6.342s] Computing alignments... [227.83s] Deallocating buffers... [0.553s] Loading trace points... Warning: resident size (113786487724) exceeds memory limit. [0.09s] Sorting trace points... [10.424s] Computing alignments... [227.237s] Deallocating buffers... [2.218s] Loading trace points... Warning: resident size (114027298954) exceeds memory limit. [0.091s] Sorting trace points... [7.377s] Computing alignments... [229.005s] Deallocating buffers... [1.156s] Loading trace points... Warning: resident size (115792930354) exceeds memory limit. [0.063s] Sorting trace points... [9.664s] Computing alignments... [238.093s] Deallocating buffers... [1.983s] Loading trace points... Warning: resident size (115639515649) exceeds memory limit. [0.744s] Sorting trace points... [9.081s] Computing alignments... [230.712s] Deallocating buffers... [1.213s] Loading trace points... Warning: resident size (114647254654) exceeds memory limit. [0.001s] Sorting trace points... [8.334s] Computing alignments... [229.453s] Deallocating buffers... [1.659s] Loading trace points... Warning: resident size (115543528219) exceeds memory limit. [0.694s] Sorting trace points... [7.883s] Computing alignments... [233.47s] Deallocating buffers... [1.131s] Loading trace points... Warning: resident size (117448556944) exceeds memory limit. [0.053s] Sorting trace points... [10.512s] Computing alignments... [242.315s] Deallocating buffers... [1.963s] Loading trace points... Warning: resident size (116894972164) exceeds memory limit. [0.084s] Sorting trace points... [9.117s] Computing alignments... [230.715s] Deallocating buffers... [1.633s] Loading trace points... Warning: resident size (115138604134) exceeds memory limit. [0.04s] Sorting trace points... [9.151s] Computing alignments... [231.187s] Deallocating buffers... [1.738s] Loading trace points... Warning: resident size (115417236919) exceeds memory limit. [0.075s] Sorting trace points... [8.072s] Computing alignments... [231.796s] Deallocating buffers... [1.473s] Loading trace points... Warning: resident size (116690249914) exceeds memory limit. [0s] Sorting trace points... [8.197s] Computing alignments... [230.824s] Deallocating buffers... [1.868s] Loading trace points... [0s] [3905.31s] Deallocating reference... [0.078s] Loading reference sequences... [255.126s] Masking reference... [31.151s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.885s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.168s] Building query seed array... [3.136s] Computing hash join... [6.12s] Masking low complexity seeds... [0.211s] Searching alignments... [1869.41s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.073s] Building query seed array... [4.298s] Computing hash join... [5.486s] Masking low complexity seeds... [0.205s] Searching alignments... [817.185s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.86s] Building query seed array... [3.933s] Computing hash join... [5.937s] Masking low complexity seeds... [0.243s] Searching alignments... [598s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.976s] Building query seed array... [3.214s] Computing hash join... [6.054s] Masking low complexity seeds... [0.196s] Searching alignments... [620.657s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.67s] Building query seed array... [3.156s] Computing hash join... [5.783s] Masking low complexity seeds... [0.238s] Searching alignments... [864.975s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.972s] Building query seed array... [3.553s] Computing hash join... [6.106s] Masking low complexity seeds... [0.19s] Searching alignments... [665.884s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.15s] Building query seed array... [3.562s] Computing hash join... [6.184s] Masking low complexity seeds... [0.201s] Searching alignments... [484.064s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.602s] Building query seed array... [3.133s] Computing hash join... [6.168s] Masking low complexity seeds... [0.217s] Searching alignments... [497.417s] Deallocating memory... [0s] Deallocating buffers... [2.26s] Clearing query masking... [2.022s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.898s] Sorting trace points... [9.875s] Computing alignments... [244.136s] Deallocating buffers... [1.932s] Loading trace points... Warning: resident size (113085970010) exceeds memory limit. [0.001s] Sorting trace points... [9.469s] Computing alignments... [248.666s] Deallocating buffers... [1.773s] Loading trace points... Warning: resident size (114232012745) exceeds memory limit. [0.063s] Sorting trace points... [9.716s] Computing alignments... [246.194s] Deallocating buffers... [2.065s] Loading trace points... Warning: resident size (116381092730) exceeds memory limit. [0.065s] Sorting trace points... [8.94s] Computing alignments... [253.781s] Deallocating buffers... [1.601s] Loading trace points... Warning: resident size (116041559150) exceeds memory limit. [0.096s] Sorting trace points... [8.946s] Computing alignments... [246.739s] Deallocating buffers... [1.806s] Loading trace points... Warning: resident size (113675050235) exceeds memory limit. [0.063s] Sorting trace points... [8.364s] Computing alignments... [242.525s] Deallocating buffers... [1.545s] Loading trace points... Warning: resident size (113918913785) exceeds memory limit. [0.069s] Sorting trace points... [8.514s] Computing alignments... [246.733s] Deallocating buffers... [1.765s] Loading trace points... Warning: resident size (115684720820) exceeds memory limit. [0.061s] Sorting trace points... [9s] Computing alignments... [259.885s] Deallocating buffers... [1.707s] Loading trace points... Warning: resident size (115529992445) exceeds memory limit. [0.054s] Sorting trace points... [9.636s] Computing alignments... [248.082s] Deallocating buffers... [1.841s] Loading trace points... Warning: resident size (114536872805) exceeds memory limit. [0.12s] Sorting trace points... [8.219s] Computing alignments... [246.214s] Deallocating buffers... [1.527s] Loading trace points... Warning: resident size (115436898920) exceeds memory limit. [0.126s] Sorting trace points... [8.499s] Computing alignments... [249.506s] Deallocating buffers... [1.683s] Loading trace points... Warning: resident size (117342859430) exceeds memory limit. [0.09s] Sorting trace points... [10.228s] Computing alignments... [263.041s] Deallocating buffers... [1.919s] Loading trace points... Warning: resident size (116785059980) exceeds memory limit. [0.063s] Sorting trace points... [9.672s] Computing alignments... [249.064s] Deallocating buffers... [1.801s] Loading trace points... Warning: resident size (115029937160) exceeds memory limit. [0.09s] Sorting trace points... [8.49s] Computing alignments... [249.691s] Deallocating buffers... [1.579s] Loading trace points... Warning: resident size (115308547340) exceeds memory limit. [0.064s] Sorting trace points... [8.187s] Computing alignments... [249.565s] Deallocating buffers... [1.804s] Loading trace points... Warning: resident size (116583851750) exceeds memory limit. [0s] Sorting trace points... [8.345s] Computing alignments... [248s] Deallocating buffers... [1.702s] Loading trace points... [0s] [4204.1s] Deallocating reference... [0.079s] Loading reference sequences... [257.518s] Masking reference... [31.104s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.013s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.215s] Building query seed array... [3.169s] Computing hash join... [6.349s] Masking low complexity seeds... [0.212s] Searching alignments... [1848.37s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.079s] Building query seed array... [4.172s] Computing hash join... [5.449s] Masking low complexity seeds... [0.213s] Searching alignments... [811.762s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.856s] Building query seed array... [4.016s] Computing hash join... [5.885s] Masking low complexity seeds... [0.209s] Searching alignments... [597.566s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.733s] Building query seed array... [3.336s] Computing hash join... [6.227s] Masking low complexity seeds... [0.259s] Searching alignments... [612.891s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.819s] Building query seed array... [3.05s] Computing hash join... [5.655s] Masking low complexity seeds... [0.203s] Searching alignments... [865.36s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.273s] Building query seed array... [3.432s] Computing hash join... [5.897s] Masking low complexity seeds... [0.206s] Searching alignments... [656.569s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.258s] Building query seed array... [3.501s] Computing hash join... [5.739s] Masking low complexity seeds... [0.244s] Searching alignments... [485.552s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.507s] Building query seed array... [3.122s] Computing hash join... [5.704s] Masking low complexity seeds... [0.228s] Searching alignments... [494.696s] Deallocating memory... [0s] Deallocating buffers... [2s] Clearing query masking... [2.001s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [37.106s] Sorting trace points... [6.283s] Computing alignments... [227.351s] Deallocating buffers... [0.845s] Loading trace points... Warning: resident size (112692500424) exceeds memory limit. [0.056s] Sorting trace points... [10.388s] Computing alignments... [232.626s] Deallocating buffers... [2.19s] Loading trace points... Warning: resident size (113831743869) exceeds memory limit. [0.057s] Sorting trace points... [7.121s] Computing alignments... [232.252s] Deallocating buffers... [0.857s] Loading trace points... Warning: resident size (115966663584) exceeds memory limit. [0.055s] Sorting trace points... [11.112s] Computing alignments... [240.135s] Deallocating buffers... [2.323s] Loading trace points... Warning: resident size (115630248144) exceeds memory limit. [0.059s] Sorting trace points... [8.125s] Computing alignments... [232.77s] Deallocating buffers... [1.356s] Loading trace points... Warning: resident size (113278510644) exceeds memory limit. [0.075s] Sorting trace points... [9.588s] Computing alignments... [229.648s] Deallocating buffers... [1.949s] Loading trace points... Warning: resident size (113519420934) exceeds memory limit. [0.083s] Sorting trace points... [7.709s] Computing alignments... [230.104s] Deallocating buffers... [1.154s] Loading trace points... Warning: resident size (115273091739) exceeds memory limit. [0.062s] Sorting trace points... [9.831s] Computing alignments... [242.467s] Deallocating buffers... [2.095s] Loading trace points... Warning: resident size (115119251889) exceeds memory limit. [0.065s] Sorting trace points... [7.602s] Computing alignments... [233.322s] Deallocating buffers... [1.067s] Loading trace points... Warning: resident size (114132661119) exceeds memory limit. [0.049s] Sorting trace points... [10.968s] Computing alignments... [232.053s] Deallocating buffers... [2.154s] Loading trace points... Warning: resident size (115025380089) exceeds memory limit. [0.049s] Sorting trace points... [7.512s] Computing alignments... [236.825s] Deallocating buffers... [1.195s] Loading trace points... Warning: resident size (116920954074) exceeds memory limit. [0.056s] Sorting trace points... [9.397s] Computing alignments... [249.25s] Deallocating buffers... [2.099s] Loading trace points... Warning: resident size (116367213804) exceeds memory limit. [0s] Sorting trace points... [7.633s] Computing alignments... [233.41s] Deallocating buffers... [1.144s] Loading trace points... Warning: resident size (114621938649) exceeds memory limit. [0.058s] Sorting trace points... [11.017s] Computing alignments... [235.522s] Deallocating buffers... [2.176s] Loading trace points... Warning: resident size (114901322289) exceeds memory limit. [0.099s] Sorting trace points... [7.807s] Computing alignments... [236.045s] Deallocating buffers... [1.197s] Loading trace points... Warning: resident size (116167143114) exceeds memory limit. [0s] Sorting trace points... [11.88s] Computing alignments... [236.65s] Deallocating buffers... [2.42s] Loading trace points... [0s] [3968.68s] Deallocating reference... [0.072s] Loading reference sequences... [31.227s] Masking reference... [31.232s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.961s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.535s] Building query seed array... [3.137s] Computing hash join... [6.018s] Masking low complexity seeds... [0.217s] Searching alignments... [1864.5s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.606s] Building query seed array... [3.857s] Computing hash join... [6.478s] Masking low complexity seeds... [0.212s] Searching alignments... [821.141s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.731s] Building query seed array... [3.905s] Computing hash join... [6.273s] Masking low complexity seeds... [0.249s] Searching alignments... [596.532s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.801s] Building query seed array... [3.08s] Computing hash join... [6.563s] Masking low complexity seeds... [0.249s] Searching alignments... [611.955s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.551s] Building query seed array... [3.169s] Computing hash join... [5.976s] Masking low complexity seeds... [0.219s] Searching alignments... [863.034s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.925s] Building query seed array... [3.412s] Computing hash join... [6.625s] Masking low complexity seeds... [0.191s] Searching alignments... [659.016s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.734s] Building query seed array... [3.775s] Computing hash join... [6.064s] Masking low complexity seeds... [0.187s] Searching alignments... [486.828s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.409s] Building query seed array... [3.025s] Computing hash join... [6.607s] Masking low complexity seeds... [0.235s] Searching alignments... [495.384s] Deallocating memory... [0s] Deallocating buffers... [1.99s] Clearing query masking... [2.107s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [37.37s] Sorting trace points... [6.314s] Computing alignments... [230.531s] Deallocating buffers... [0.906s] Loading trace points... Warning: resident size (112748244050) exceeds memory limit. [0.06s] Sorting trace points... [11.586s] Computing alignments... [237.66s] Deallocating buffers... [2.507s] Loading trace points... Warning: resident size (113888545445) exceeds memory limit. [0.062s] Sorting trace points... [7.109s] Computing alignments... [237.166s] Deallocating buffers... [0.896s] Loading trace points... Warning: resident size (116025165695) exceeds memory limit. [0.062s] Sorting trace points... [10.558s] Computing alignments... [245.23s] Deallocating buffers... [2.516s] Loading trace points... Warning: resident size (115687627550) exceeds memory limit. [0.069s] Sorting trace points... [7.422s] Computing alignments... [238.682s] Deallocating buffers... [0.934s] Loading trace points... Warning: resident size (113334682220) exceeds memory limit. [0.043s] Sorting trace points... [9.765s] Computing alignments... [232.485s] Deallocating buffers... [2.233s] Loading trace points... Warning: resident size (113577513500) exceeds memory limit. [1.25s] Sorting trace points... [7.467s] Computing alignments... [232.744s] Deallocating buffers... [1.064s] Loading trace points... Warning: resident size (115332047840) exceeds memory limit. [0.038s] Sorting trace points... [9.815s] Computing alignments... [247.918s] Deallocating buffers... [2.311s] Loading trace points... Warning: resident size (115178175980) exceeds memory limit. [0.062s] Sorting trace points... [7.479s] Computing alignments... [234.535s] Deallocating buffers... [1.106s] Loading trace points... Warning: resident size (114191623385) exceeds memory limit. [0.057s] Sorting trace points... [10.274s] Computing alignments... [235.468s] Deallocating buffers... [2.369s] Loading trace points... Warning: resident size (115084191740) exceeds memory limit. [0.097s] Sorting trace points... [7.605s] Computing alignments... [239.087s] Deallocating buffers... [1.162s] Loading trace points... Warning: resident size (116980544360) exceeds memory limit. [0.067s] Sorting trace points... [10.079s] Computing alignments... [248.813s] Deallocating buffers... [2.311s] Loading trace points... Warning: resident size (116428503890) exceeds memory limit. [0.046s] Sorting trace points... [7.178s] Computing alignments... [236.819s] Deallocating buffers... [1.103s] Loading trace points... Warning: resident size (114682086365) exceeds memory limit. [0.079s] Sorting trace points... [10.354s] Computing alignments... [238.146s] Deallocating buffers... [2.346s] Loading trace points... Warning: resident size (114959243255) exceeds memory limit. [0.081s] Sorting trace points... [6.508s] Computing alignments... [239.699s] Deallocating buffers... [1.099s] Loading trace points... Warning: resident size (116226523535) exceeds memory limit. [0s] Sorting trace points... [10.282s] Computing alignments... [239.212s] Deallocating buffers... [2.401s] Loading trace points... [0s] [4020.92s] Deallocating reference... [0.112s] Loading reference sequences... [31.094s] Masking reference... [31.879s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.991s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.169s] Building query seed array... [3.151s] Computing hash join... [7.273s] Masking low complexity seeds... [0.406s] Searching alignments... [1856.27s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.308s] Building query seed array... [4.189s] Computing hash join... [7.028s] Masking low complexity seeds... [0.206s] Searching alignments... [807.627s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.563s] Building query seed array... [3.911s] Computing hash join... [6.807s] Masking low complexity seeds... [0.226s] Searching alignments... [597.015s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.729s] Building query seed array... [3.328s] Computing hash join... [6.478s] Masking low complexity seeds... [0.225s] Searching alignments... [609.136s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.395s] Building query seed array... [3.092s] Computing hash join... [6.741s] Masking low complexity seeds... [0.272s] Searching alignments... [868.309s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.911s] Building query seed array... [3.515s] Computing hash join... [6.913s] Masking low complexity seeds... [0.192s] Searching alignments... [660.639s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.943s] Building query seed array... [3.706s] Computing hash join... [7.041s] Masking low complexity seeds... [0.202s] Searching alignments... [487.926s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.997s] Building query seed array... [3.028s] Computing hash join... [6.828s] Masking low complexity seeds... [0.218s] Searching alignments... [495.668s] Deallocating memory... [0s] Deallocating buffers... [1.707s] Clearing query masking... [2.3s] Opening temporary output file... [0.005s] Computing alignments... Loading trace points... [38.34s] Sorting trace points... [7.929s] Computing alignments... [221.323s] Deallocating buffers... [1.526s] Loading trace points... Warning: resident size (112456846016) exceeds memory limit. [0.089s] Sorting trace points... [8.9s] Computing alignments... [226.431s] Deallocating buffers... [1.804s] Loading trace points... Warning: resident size (113585667041) exceeds memory limit. [0.063s] Sorting trace points... [8.001s] Computing alignments... [225.758s] Deallocating buffers... [1.582s] Loading trace points... Warning: resident size (115711396946) exceeds memory limit. [0.08s] Sorting trace points... [9.145s] Computing alignments... [231.741s] Deallocating buffers... [1.904s] Loading trace points... Warning: resident size (115378918691) exceeds memory limit. [0.112s] Sorting trace points... [7.686s] Computing alignments... [224.015s] Deallocating buffers... [1.478s] Loading trace points... Warning: resident size (113038550936) exceeds memory limit. [0.047s] Sorting trace points... [9.192s] Computing alignments... [222.829s] Deallocating buffers... [1.798s] Loading trace points... Warning: resident size (113278019801) exceeds memory limit. [0.003s] Sorting trace points... [8.863s] Computing alignments... [223.135s] Deallocating buffers... [1.568s] Loading trace points... Warning: resident size (115023836006) exceeds memory limit. [0.064s] Sorting trace points... [9.253s] Computing alignments... [236.497s] Deallocating buffers... [1.932s] Loading trace points... Warning: resident size (114873285431) exceeds memory limit. [0.051s] Sorting trace points... [10.008s] Computing alignments... [226.562s] Deallocating buffers... [1.62s] Loading trace points... Warning: resident size (113891173256) exceeds memory limit. [0.058s] Sorting trace points... [9.694s] Computing alignments... [224.787s] Deallocating buffers... [1.919s] Loading trace points... Warning: resident size (114776762591) exceeds memory limit. [0.096s] Sorting trace points... [8.007s] Computing alignments... [229.85s] Deallocating buffers... [1.65s] Loading trace points... Warning: resident size (116664490901) exceeds memory limit. [0.08s] Sorting trace points... [9.98s] Computing alignments... [238.074s] Deallocating buffers... [1.789s] Loading trace points... Warning: resident size (116116563671) exceeds memory limit. [0.053s] Sorting trace points... [7.077s] Computing alignments... [227.091s] Deallocating buffers... [1.658s] Loading trace points... Warning: resident size (114376722206) exceeds memory limit. [0.079s] Sorting trace points... [7.608s] Computing alignments... [227.601s] Deallocating buffers... [1.593s] Loading trace points... Warning: resident size (114651732701) exceeds memory limit. [0.001s] Sorting trace points... [8.159s] Computing alignments... [229.001s] Deallocating buffers... [1.724s] Loading trace points... Warning: resident size (115911438986) exceeds memory limit. [0s] Sorting trace points... [9.032s] Computing alignments... [228.52s] Deallocating buffers... [1.785s] Loading trace points... [0s] [3848.56s] Deallocating reference... [0.077s] Loading reference sequences... [29.652s] Masking reference... [31.001s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.107s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.419s] Building query seed array... [3.149s] Computing hash join... [6.407s] Masking low complexity seeds... [0.206s] Searching alignments... [1861.03s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.487s] Building query seed array... [4.217s] Computing hash join... [6.234s] Masking low complexity seeds... [0.212s] Searching alignments... [823.277s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.223s] Building query seed array... [3.785s] Computing hash join... [6.658s] Masking low complexity seeds... [0.199s] Searching alignments... [601.794s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.723s] Building query seed array... [3.18s] Computing hash join... [6.161s] Masking low complexity seeds... [0.26s] Searching alignments... [619.45s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.343s] Building query seed array... [3.093s] Computing hash join... [6.505s] Masking low complexity seeds... [0.216s] Searching alignments... [869.844s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.941s] Building query seed array... [3.42s] Computing hash join... [6.525s] Masking low complexity seeds... [0.192s] Searching alignments... [667.623s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.342s] Building query seed array... [3.521s] Computing hash join... [6.206s] Masking low complexity seeds... [0.237s] Searching alignments... [485.952s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.53s] Building query seed array... [3.186s] Computing hash join... [6.543s] Masking low complexity seeds... [0.236s] Searching alignments... [498.31s] Deallocating memory... [0s] Deallocating buffers... [2.406s] Clearing query masking... [2.074s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [39.342s] Sorting trace points... [8.684s] Computing alignments... [224.765s] Deallocating buffers... [1.385s] Loading trace points... Warning: resident size (112864695599) exceeds memory limit. [0.042s] Sorting trace points... [11.957s] Computing alignments... [231.707s] Deallocating buffers... [2.542s] Loading trace points... Warning: resident size (114001029059) exceeds memory limit. [0.064s] Sorting trace points... [7.908s] Computing alignments... [231.61s] Deallocating buffers... [1.249s] Loading trace points... Warning: resident size (116138047349) exceeds memory limit. [0.069s] Sorting trace points... [11.859s] Computing alignments... [239.562s] Deallocating buffers... [2.409s] Loading trace points... Warning: resident size (115800554114) exceeds memory limit. [0.04s] Sorting trace points... [6.234s] Computing alignments... [230.028s] Deallocating buffers... [1.157s] Loading trace points... Warning: resident size (113446301444) exceeds memory limit. [0.097s] Sorting trace points... [10.742s] Computing alignments... [228.098s] Deallocating buffers... [2.269s] Loading trace points... Warning: resident size (113686024154) exceeds memory limit. [0.068s] Sorting trace points... [8.18s] Computing alignments... [228.828s] Deallocating buffers... [1.189s] Loading trace points... Warning: resident size (115442323064) exceeds memory limit. [0.059s] Sorting trace points... [11.059s] Computing alignments... [241.35s] Deallocating buffers... [2.315s] Loading trace points... Warning: resident size (115289848754) exceeds memory limit. [0.065s] Sorting trace points... [7.873s] Computing alignments... [232.162s] Deallocating buffers... [1.249s] Loading trace points... Warning: resident size (114305867099) exceeds memory limit. [0.077s] Sorting trace points... [11.713s] Computing alignments... [229.41s] Deallocating buffers... [2.281s] Loading trace points... Warning: resident size (115199087414) exceeds memory limit. [0.101s] Sorting trace points... [7.339s] Computing alignments... [235.749s] Deallocating buffers... [1.321s] Loading trace points... Warning: resident size (117094392074) exceeds memory limit. [0.07s] Sorting trace points... [13.322s] Computing alignments... [244.764s] Deallocating buffers... [2.665s] Loading trace points... Warning: resident size (116541972719) exceeds memory limit. [0.075s] Sorting trace points... [7.166s] Computing alignments... [234.191s] Deallocating buffers... [1.233s] Loading trace points... Warning: resident size (114791551679) exceeds memory limit. [0.082s] Sorting trace points... [9.428s] Computing alignments... [234.121s] Deallocating buffers... [2.275s] Loading trace points... Warning: resident size (115070092199) exceeds memory limit. [0.062s] Sorting trace points... [8.551s] Computing alignments... [234.864s] Deallocating buffers... [1.358s] Loading trace points... Warning: resident size (116338403669) exceeds memory limit. [0s] Sorting trace points... [8.152s] Computing alignments... [234.716s] Deallocating buffers... [2.124s] Loading trace points... [0s] [3955.57s] Deallocating reference... [0.073s] Loading reference sequences... [29.308s] Masking reference... [32.126s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.48s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.365s] Building query seed array... [3.081s] Computing hash join... [6.952s] Masking low complexity seeds... [0.41s] Searching alignments... [1860.8s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.557s] Building query seed array... [4.019s] Computing hash join... [6.717s] Masking low complexity seeds... [0.212s] Searching alignments... [816.499s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.174s] Building query seed array... [3.918s] Computing hash join... [6.784s] Masking low complexity seeds... [0.226s] Searching alignments... [593.801s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.45s] Building query seed array... [3.336s] Computing hash join... [6.798s] Masking low complexity seeds... [0.216s] Searching alignments... [612.822s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.313s] Building query seed array... [2.897s] Computing hash join... [6.88s] Masking low complexity seeds... [0.247s] Searching alignments... [855.957s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.431s] Building query seed array... [3.429s] Computing hash join... [6.62s] Masking low complexity seeds... [0.211s] Searching alignments... [654.254s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.722s] Building query seed array... [3.621s] Computing hash join... [6.637s] Masking low complexity seeds... [0.203s] Searching alignments... [482.699s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.971s] Building query seed array... [3.074s] Computing hash join... [6.527s] Masking low complexity seeds... [0.2s] Searching alignments... [492.021s] Deallocating memory... [0s] Deallocating buffers... [1.31s] Clearing query masking... [2.135s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [38.8s] Sorting trace points... [8.834s] Computing alignments... [200.348s] Deallocating buffers... [1.443s] Loading trace points... Warning: resident size (112699653286) exceeds memory limit. [0.088s] Sorting trace points... [8.43s] Computing alignments... [205.231s] Deallocating buffers... [1.535s] Loading trace points... Warning: resident size (113837955961) exceeds memory limit. [0.04s] Sorting trace points... [9.221s] Computing alignments... [206.542s] Deallocating buffers... [1.451s] Loading trace points... Warning: resident size (115974363211) exceeds memory limit. [0.049s] Sorting trace points... [8.571s] Computing alignments... [213.742s] Deallocating buffers... [1.651s] Loading trace points... Warning: resident size (115636564141) exceeds memory limit. [0.11s] Sorting trace points... [10.048s] Computing alignments... [204.566s] Deallocating buffers... [1.787s] Loading trace points... Warning: resident size (113284516561) exceeds memory limit. [0.121s] Sorting trace points... [8.739s] Computing alignments... [204.253s] Deallocating buffers... [1.553s] Loading trace points... Warning: resident size (113528862481) exceeds memory limit. [0.107s] Sorting trace points... [7.849s] Computing alignments... [204.401s] Deallocating buffers... [1.546s] Loading trace points... Warning: resident size (115282970611) exceeds memory limit. [0.387s] Sorting trace points... [9.955s] Computing alignments... [214.405s] Deallocating buffers... [1.677s] Loading trace points... Warning: resident size (115128397051) exceeds memory limit. [0.104s] Sorting trace points... [7.786s] Computing alignments... [205.354s] Deallocating buffers... [1.5s] Loading trace points... Warning: resident size (114140142151) exceeds memory limit. [0.073s] Sorting trace points... [7.96s] Computing alignments... [206.571s] Deallocating buffers... [1.577s] Loading trace points... Warning: resident size (115033006681) exceeds memory limit. [0.053s] Sorting trace points... [8.191s] Computing alignments... [210.777s] Deallocating buffers... [1.512s] Loading trace points... Warning: resident size (116930245711) exceeds memory limit. [0.067s] Sorting trace points... [9.763s] Computing alignments... [218.119s] Deallocating buffers... [1.845s] Loading trace points... Warning: resident size (116376561271) exceeds memory limit. [0.073s] Sorting trace points... [9.354s] Computing alignments... [206.682s] Deallocating buffers... [1.698s] Loading trace points... Warning: resident size (114628888651) exceeds memory limit. [0.069s] Sorting trace points... [9.168s] Computing alignments... [209.17s] Deallocating buffers... [1.667s] Loading trace points... Warning: resident size (114906747466) exceeds memory limit. [0.099s] Sorting trace points... [8.315s] Computing alignments... [208.374s] Deallocating buffers... [1.56s] Loading trace points... Warning: resident size (116174429041) exceeds memory limit. [0s] Sorting trace points... [9.375s] Computing alignments... [210.217s] Deallocating buffers... [1.811s] Loading trace points... [0s] [3536.56s] Deallocating reference... [0.062s] Loading reference sequences... [30.336s] Masking reference... [30.922s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.007s] Building reference histograms... [33.776s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.48s] Building query seed array... [3.23s] Computing hash join... [6.978s] Masking low complexity seeds... [0.384s] Searching alignments... [1858.01s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.985s] Building query seed array... [4.133s] Computing hash join... [6.48s] Masking low complexity seeds... [0.22s] Searching alignments... [821.564s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.586s] Building query seed array... [3.78s] Computing hash join... [7.263s] Masking low complexity seeds... [0.268s] Searching alignments... [598.758s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.109s] Building query seed array... [3.22s] Computing hash join... [7.075s] Masking low complexity seeds... [0.205s] Searching alignments... [618.661s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.293s] Building query seed array... [3.032s] Computing hash join... [6.754s] Masking low complexity seeds... [0.205s] Searching alignments... [873.68s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.325s] Building query seed array... [3.426s] Computing hash join... [7.108s] Masking low complexity seeds... [0.218s] Searching alignments... [661.42s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.274s] Building query seed array... [3.623s] Computing hash join... [6.943s] Masking low complexity seeds... [0.228s] Searching alignments... [488.854s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.499s] Building query seed array... [3.1s] Computing hash join... [6.615s] Masking low complexity seeds... [0.209s] Searching alignments... [495.846s] Deallocating memory... [0s] Deallocating buffers... [1.737s] Clearing query masking... [2.276s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [40.889s] Sorting trace points... [9.628s] Computing alignments... [245.721s] Deallocating buffers... [1.671s] Loading trace points... Warning: resident size (113012677951) exceeds memory limit. [0.063s] Sorting trace points... [8.741s] Computing alignments... [257.513s] Deallocating buffers... [1.47s] Loading trace points... Warning: resident size (114153623146) exceeds memory limit. [0.059s] Sorting trace points... [8.777s] Computing alignments... [251.713s] Deallocating buffers... [1.754s] Loading trace points... Warning: resident size (116299465321) exceeds memory limit. [0.056s] Sorting trace points... [9.719s] Computing alignments... [258.217s] Deallocating buffers... [1.668s] Loading trace points... Warning: resident size (115963594636) exceeds memory limit. [0.078s] Sorting trace points... [8.517s] Computing alignments... [251.499s] Deallocating buffers... [1.766s] Loading trace points... Warning: resident size (113602606186) exceeds memory limit. [0.049s] Sorting trace points... [8.596s] Computing alignments... [247.645s] Deallocating buffers... [1.492s] Loading trace points... Warning: resident size (113844525886) exceeds memory limit. [0.074s] Sorting trace points... [8.18s] Computing alignments... [251.273s] Deallocating buffers... [1.746s] Loading trace points... Warning: resident size (115604716366) exceeds memory limit. [0.001s] Sorting trace points... [10.562s] Computing alignments... [261.545s] Deallocating buffers... [1.746s] Loading trace points... Warning: resident size (115450829086) exceeds memory limit. [0.04s] Sorting trace points... [8.227s] Computing alignments... [250.663s] Deallocating buffers... [1.639s] Loading trace points... Warning: resident size (114460128661) exceeds memory limit. [0.071s] Sorting trace points... [9.361s] Computing alignments... [251.448s] Deallocating buffers... [1.687s] Loading trace points... Warning: resident size (115353057016) exceeds memory limit. [0.08s] Sorting trace points... [8.907s] Computing alignments... /var/spool/slurm/d/job4511835/slurm_script: line 72: 12951 Killed "${programs_array[diamond]}" blastx --db ${dmnd_db} --query "${fastq}" --out "${no_ext}".blastx.meganized.daa --outfmt 100 --top 5 --block-size 15.0 --index-chunks 4 --memory-limit ${mem_limit} --threads ${threads}