Version   MEGAN Community Edition (version 6.21.5, built 5 May 2021)
Author(s) Daniel H. Huson
Copyright (C) 2021 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
This is free software, licensed under the terms of the GNU General Public License, Version 3.
Sources available at: https://github.com/husonlab/megan-ce
Java version: 14.0.1

Opening startup files
Loading ncbi.map: 2,302,807
Loading ncbi.tre: 2,302,811
Executing: set mode=ABSOLUTE;
Executing: add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/12M_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/13M_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/16F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/29F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/31M_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/35F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/36F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/39F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/3F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/41F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/44F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/48M_R1-1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/50F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/52F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/53F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/54F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/59M_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/64M_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/6M_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/76F_R1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/77F_R1-1.rma6';add file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/7M_R1.rma6';
Executing: apply;
Selected: 22
Executing: compare mode=ABSOLUTE readAssignmentMode=readCount keep1=false ignoreUnassigned=false meganFile='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/12M_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/13M_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/16F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/29F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/31M_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/35F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/36F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/39F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/3F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/41F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/44F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/48M_R1-1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/50F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/52F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/53F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/54F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/59M_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/64M_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/6M_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/76F_R1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/77F_R1-1.rma6', '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/7M_R1.rma6';
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/12M_R1.rma6' readOnly=true;update;
Info: Opened file '12M_R1.rma6' with 549,266 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/13M_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/13M_R1.rma6' with 608,140 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/16F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/16F_R1.rma6' with 470,010 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/29F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/29F_R1.rma6' with 430,254 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/31M_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/31M_R1.rma6' with 333,860 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/35F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/35F_R1.rma6' with 456,809 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/36F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/36F_R1.rma6' with 502,043 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/39F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/39F_R1.rma6' with 446,973 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/3F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/3F_R1.rma6' with 492,416 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/41F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/41F_R1.rma6' with 352,342 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/44F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/44F_R1.rma6' with 1,015,725 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/48M_R1-1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/48M_R1-1.rma6' with 542,470 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/50F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/50F_R1.rma6' with 588,865 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/52F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/52F_R1.rma6' with 598,791 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/53F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/53F_R1.rma6' with 518,710 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/54F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/54F_R1.rma6' with 581,478 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/59M_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/59M_R1.rma6' with 282,117 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/64M_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/64M_R1.rma6' with 447,060 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/6M_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/6M_R1.rma6' with 503,217 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/76F_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/76F_R1.rma6' with 464,934 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/77F_R1-1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/77F_R1-1.rma6' with 478,547 reads
updating viewer
Executing: open file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/7M_R1.rma6' readOnly=true;update;
Opened file '/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/7M_R1.rma6' with 525,153 reads
updating viewer
Computing comparison: 
Total assigned:    4,179,298
Info: Command completed (12s): compare mode=ABSOLUTE readAssignmentMode=readCount keep1=false ignoreUnassigned=false meganFile='/home/sam/analyses/20220309-...
Executing: collapse rank='Genus';select rank='Genus';
Executing: set nodeDrawer=PieChart;
Executing: set nodeDrawer=BarChart;
Executing: set nodeDrawer=Circle;
Executing: expand direction=vertical;
Executing: expand direction=vertical;
Executing: expand direction=vertical;
Executing: contract direction=vertical;
Executing: contract direction=vertical;
Executing: show window=groups;
Executing: add group
Executing: add group
Executing: show window=samplesViewer;
Executing: show window=samplesViewer;
Executing: set useProgramColors=true;
Executing: set useProgramColors=false;
Executing: set scaleBy=Summarized;
Executing: show chart drawer=BubbleChart data='Taxonomy';
Executing: set chartDrawer=BoxChart;
UpdateView
Executing: set chartDrawer=BricksChart;
Executing: set chartDrawer=CoOccurrencePlot;
Executing: set chartDrawer=CorrelationPlot;
Updating...
Executing: set chartDrawer=HeatMap;
Updating...
Executing: set chartDrawer=LineChart;
Executing: set chartDrawer=PieChart;
Executing: set chartDrawer=RadialTreeChart;
Executing: set chartDrawer=StackedBarChart;
Executing: set chartDrawer=StackedLineChart;
Executing: set chartDrawer=WordCloud;
Executing: exportImage file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/20220309-cvir-unmapped_bsseq-megan-wordcloud-genus.png' format=png visibleOnly=false textAsShapes=true title=none replace=true;
(Export panel size: 1714 x 852)
Exported image to file: /home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/20220309-cvir-unmapped_bsseq-megan-wordcloud-genus.png
Executing: set scaleBy=Assigned;
Executing: set nodeDrawer=PieChart;
Executing: exportImage file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/20220309-cvir-unmapped_bsseq-megan-tree-assignments-genus.png' format=png visibleOnly=false textAsShapes=true title=none replace=true;
(Export panel size: 2107 x 1013)
Exported image to file: /home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/20220309-cvir-unmapped_bsseq-megan-tree-assignments-genus.png
Executing: save file='/home/sam/analyses/20220309-cvir-unmapped_bsseq-megan/20220309-cvir-unmapped-bsseq-comparison.megan' summary=true;
done
Executing: close what=current;