/volume2/web/Atumefaciens/20210908-cbai-transcriptome_v3.1-hisat2-build-index

Generate cbai_transcriptome_v3.1 transcriptome assembly HISAT2 index files on Mox.

- 20210908-cbai-transcriptome_v3.1-hisat2-build-index.sh: SLURM script for running job on Mox HPC.

- *.ht2: HISAT2 index files.

- checksums.md5: MD5 checksums for all files in this directory.

- hisat2_build.err: Standard error output from HISAT2 indexing.

- program_options.log: Log of program options/help menus used in SLURM script.

- slurm-2188948.out: Standard output catpured by SLURM job.

- system_path.log: Record of system $PATH at runtime.

Notebook:

https://robertslab.github.io/sams-notebook/2021/09/08/Assembly-Indexing-C.bairdi-Transcriptome-cbai_transcriptome_v3.1.fasta-with-Hisat2-on-Mox.html