[2021-04-01 19:18:14,207] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-04-01 19:18:14,234] multiqc [DEBUG ] Loading config settings from: /usr/lusers/samwhite/.multiqc_config.yaml [2021-04-01 19:18:14,234] multiqc [DEBUG ] New config 'star': {'fn': '*Log.final.out'} [2021-04-01 19:18:14,235] multiqc [DEBUG ] New config 'star/genecounts': {'fn': '*ReadsPerGene.out.tab'} [2021-04-01 19:18:14,235] multiqc [DEBUG ] Added to filename patterns: {'fastp': {'fn': '*report.json'}} [2021-04-01 19:18:14,235] multiqc [DEBUG ] New config 'hisat2': {'contents': 'HISAT2 summary stats:', 'shared': True} [2021-04-01 19:18:14,236] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-04-01 19:18:14,236] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-04-01 19:18:19,525] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-04-01 19:18:19,525] multiqc [INFO ] This is MultiQC v1.8 [2021-04-01 19:18:19,525] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-04-01 19:18:19,525] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/samwhite/outputs/20210401_pgen_fastp_10x-genomics [2021-04-01 19:18:19,525] multiqc [INFO ] Template : default [2021-04-01 19:18:19,526] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-04-01 19:18:19,526] multiqc [INFO ] Searching : /gscratch/scrubbed/samwhite/outputs/20210401_pgen_fastp_10x-genomics [2021-04-01 19:18:19,527] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-04-01 19:18:19,528] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpvgx2o68b [2021-04-01 19:18:20,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: HiC-Libraries-GeoHiC-C3-N701_S18_L001_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleA_S14_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleD_S13_L001_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleA_S14_L001_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,343] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Geoduck_HiC_S2_L006}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleB_S11_L001_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleC_S16_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleC_S16_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: HiC-Libraries-GeoHiC-C3-N701_S18_L001}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleB_S15_L001_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleC_S12_L001_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleC_S16_L001}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleC_S12_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: raw_fastq_checksums.md5 [2021-04-01 19:18:20,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleB_S15_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleB_S11_L001}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleD_S13_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleB_S15_L001}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Geoduck_HiC_S2_L006_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,414] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleB_S11_L001_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: HiC-Libraries-GeoHiC-C3-N701_S18_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleC_S12_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleD_S17_L001_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Geoduck_HiC_S2_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L001_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleD_S13_L001_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleD_S17_L001}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleB_S11_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleD_S17_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleC_S12_L001}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleD_S13_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleA_S14_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_fastq_checksums.md5 [2021-04-01 19:18:20,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleC_S16_L001_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleA_S14_L001}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleD_S17_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-1801764.out [2021-04-01 19:18:20,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-1801764.out [2021-04-01 19:18:20,481] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: HiC-Libraries-GeoHiC-C3-N701_S18_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleB_S15_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L001}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 20210401_pgen_fastp_10x-genomics.sh [2021-04-01 19:18:20,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 20210401_pgen_fastp_10x-genomics.sh [2021-04-01 19:18:20,509] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,509] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L001_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,509] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Geoduck_HiC_S2_L006_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,509] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleD_S13_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,509] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleD_S13_L001}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,509] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L002_R1_001.fastp-trim.20210401.report.html [2021-04-01 19:18:20,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleB_S11_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: HiC-Libraries-GeoHiC-C3-N701_S18_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleA_S14_L001_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: HiC-Libraries-GeoHiC-C3-N701_S18_L001_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleC_S16_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Geoduck_HiC_S2_L002_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleB_S15_L001_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleB_S11_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleC_S12_L001_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleA_S14_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleD_S17_L001_R2_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleC_S16_L001_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:20,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleD_S17_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x6-B3-MultipleB_S15_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10x-Genomics-Libraries-Geo10x5-A3-MultipleC_S12_L002}.fastp-trim.20210401.report.html [2021-04-01 19:18:20,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Geoduck_HiC_S2_L002_R1_001.fastp-trim.20210401.fq.gz [2021-04-01 19:18:25,149] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-04-01 19:18:25,163] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-04-01 19:18:25,204] multiqc [DEBUG ] No samples found: custom_content [2021-04-01 19:18:25,278] multiqc [DEBUG ] No samples found: conpair [2021-04-01 19:18:25,360] multiqc [DEBUG ] No samples found: peddy [2021-04-01 19:18:25,447] multiqc [DEBUG ] No samples found: methylQA [2021-04-01 19:18:25,478] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-04-01 19:18:25,594] multiqc [DEBUG ] No samples found: qualimap [2021-04-01 19:18:25,629] multiqc [DEBUG ] No samples found: preseq [2021-04-01 19:18:25,660] multiqc [DEBUG ] No samples found: quast [2021-04-01 19:18:25,708] multiqc [DEBUG ] No samples found: qorts [2021-04-01 19:18:25,764] multiqc [DEBUG ] No samples found: rna_seqc [2021-04-01 19:18:25,796] multiqc [DEBUG ] No samples found: rsem [2021-04-01 19:18:25,904] multiqc [DEBUG ] No samples found: rseqc [2021-04-01 19:18:25,965] multiqc [DEBUG ] No samples found: busco [2021-04-01 19:18:26,012] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-04-01 19:18:26,058] multiqc [DEBUG ] No samples found: disambiguate [2021-04-01 19:18:26,234] multiqc [DEBUG ] No samples found: supernova [2021-04-01 19:18:26,379] multiqc [DEBUG ] No samples found: deeptools [2021-04-01 19:18:26,429] multiqc [DEBUG ] No samples found: sargasso [2021-04-01 19:18:26,475] multiqc [DEBUG ] No samples found: verifybamid [2021-04-01 19:18:26,501] multiqc [DEBUG ] No samples found: mirtrace [2021-04-01 19:18:26,521] multiqc [DEBUG ] No samples found: happy [2021-04-01 19:18:26,564] multiqc [DEBUG ] No samples found: homer [2021-04-01 19:18:26,590] multiqc [DEBUG ] No samples found: macs2 [2021-04-01 19:18:26,603] multiqc [DEBUG ] No samples found: theta2 [2021-04-01 19:18:26,630] multiqc [DEBUG ] No samples found: snpeff [2021-04-01 19:18:26,720] multiqc [DEBUG ] No samples found: gatk [2021-04-01 19:18:26,733] multiqc [DEBUG ] No samples found: htseq [2021-04-01 19:18:26,804] multiqc [DEBUG ] No samples found: bcftools [2021-04-01 19:18:26,817] multiqc [DEBUG ] No samples found: featureCounts [2021-04-01 19:18:26,827] multiqc [DEBUG ] No samples found: fgbio [2021-04-01 19:18:26,834] multiqc [DEBUG ] No samples found: dedup [2021-04-01 19:18:26,852] multiqc [DEBUG ] No samples found: damageprofiler [2021-04-01 19:18:27,030] multiqc [DEBUG ] No samples found: biobambam2 [2021-04-01 19:18:27,044] multiqc [DEBUG ] No samples found: mtnucratio [2021-04-01 19:18:27,049] multiqc [DEBUG ] No samples found: picard [2021-04-01 19:18:27,073] multiqc [DEBUG ] No samples found: prokka [2021-04-01 19:18:27,085] multiqc [DEBUG ] No samples found: samblaster [2021-04-01 19:18:27,169] multiqc [DEBUG ] No samples found: samtools [2021-04-01 19:18:27,198] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-04-01 19:18:27,248] multiqc [DEBUG ] No samples found: bamtools [2021-04-01 19:18:27,260] multiqc [DEBUG ] No samples found: jellyfish [2021-04-01 19:18:27,292] multiqc [DEBUG ] No samples found: vcftools [2021-04-01 19:18:27,317] multiqc [DEBUG ] No samples found: longranger [2021-04-01 19:18:27,344] multiqc [DEBUG ] No samples found: stacks [2021-04-01 19:18:27,418] multiqc [DEBUG ] No samples found: bbmap [2021-04-01 19:18:27,472] multiqc [DEBUG ] No samples found: bismark [2021-04-01 19:18:27,504] multiqc [DEBUG ] No samples found: biscuit [2021-04-01 19:18:27,532] multiqc [DEBUG ] No samples found: hicexplorer [2021-04-01 19:18:27,563] multiqc [DEBUG ] No samples found: hicup [2021-04-01 19:18:27,598] multiqc [DEBUG ] No samples found: hicpro [2021-04-01 19:18:27,612] multiqc [DEBUG ] No samples found: salmon [2021-04-01 19:18:27,635] multiqc [DEBUG ] No samples found: kallisto [2021-04-01 19:18:27,668] multiqc [DEBUG ] No samples found: slamdunk [2021-04-01 19:18:27,703] multiqc [DEBUG ] No samples found: star [2021-04-01 19:18:27,733] multiqc [DEBUG ] No samples found: hisat2 [2021-04-01 19:18:27,756] multiqc [DEBUG ] No samples found: tophat [2021-04-01 19:18:27,787] multiqc [DEBUG ] No samples found: bowtie2 [2021-04-01 19:18:27,817] multiqc [DEBUG ] No samples found: bowtie1 [2021-04-01 19:18:27,830] multiqc [DEBUG ] No samples found: kat [2021-04-01 19:18:27,840] multiqc [DEBUG ] No samples found: leehom [2021-04-01 19:18:27,872] multiqc [DEBUG ] No samples found: adapterRemoval [2021-04-01 19:18:27,886] multiqc [DEBUG ] No samples found: clipandmerge [2021-04-01 19:18:27,927] multiqc [DEBUG ] No samples found: cutadapt [2021-04-01 19:18:27,941] multiqc [DEBUG ] No samples found: flexbar [2021-04-01 19:18:27,956] multiqc [DEBUG ] No samples found: trimmomatic [2021-04-01 19:18:28,026] multiqc [DEBUG ] No samples found: skewer [2021-04-01 19:18:28,040] multiqc [DEBUG ] No samples found: sortmerna [2021-04-01 19:18:28,063] multiqc [DEBUG ] No samples found: biobloomtools [2021-04-01 19:18:28,090] multiqc [DEBUG ] No samples found: fastq_screen [2021-04-01 19:18:28,134] multiqc [DEBUG ] No samples found: afterqc [2021-04-01 19:18:28,314] multiqc.modules.fastp.fastp [DEBUG ] No insert size plot data: HiC-Libraries-GeoHiC-C3-N701_S18_L001.fastp-trim.20210401.report.json [2021-04-01 19:18:28,432] multiqc.modules.fastp.fastp [DEBUG ] No insert size plot data: HiC-Libraries-GeoHiC-C3-N701_S18_L002.fastp-trim.20210401.report.json [2021-04-01 19:18:28,706] multiqc.modules.fastp.fastp [INFO ] Found 21 reports [2021-04-01 19:18:28,838] multiqc [DEBUG ] No samples found: fastqc [2021-04-01 19:18:28,867] multiqc [DEBUG ] No samples found: minionqc [2021-04-01 19:18:28,958] multiqc [DEBUG ] No samples found: mosdepth [2021-04-01 19:18:28,984] multiqc [DEBUG ] No samples found: clusterflow [2021-04-01 19:18:29,061] multiqc [DEBUG ] No samples found: bcl2fastq [2021-04-01 19:18:29,090] multiqc [DEBUG ] No samples found: interop [2021-04-01 19:18:29,124] multiqc [DEBUG ] No samples found: flash [2021-04-01 19:18:29,152] multiqc [DEBUG ] No samples found: seqyclean [2021-04-01 19:18:29,189] multiqc [INFO ] Compressing plot data [2021-04-01 19:18:30,304] multiqc [INFO ] Report : multiqc_report.html [2021-04-01 19:18:30,305] multiqc [INFO ] Data : multiqc_data [2021-04-01 19:18:30,306] multiqc [DEBUG ] Moving data file from '/tmp/tmpvgx2o68b/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/samwhite/outputs/20210401_pgen_fastp_10x-genomics/multiqc_data' [2021-04-01 19:18:30,310] multiqc [DEBUG ] Moving data file from '/tmp/tmpvgx2o68b/multiqc_data/multiqc_fastp.txt' to '/gscratch/scrubbed/samwhite/outputs/20210401_pgen_fastp_10x-genomics/multiqc_data' [2021-04-01 19:18:30,312] multiqc [DEBUG ] Moving data file from '/tmp/tmpvgx2o68b/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/samwhite/outputs/20210401_pgen_fastp_10x-genomics/multiqc_data' [2021-04-01 19:18:30,313] multiqc [DEBUG ] Moving data file from '/tmp/tmpvgx2o68b/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/samwhite/outputs/20210401_pgen_fastp_10x-genomics/multiqc_data' [2021-04-01 19:18:30,315] multiqc [DEBUG ] Moving data file from '/tmp/tmpvgx2o68b/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/samwhite/outputs/20210401_pgen_fastp_10x-genomics/multiqc_data' [2021-04-01 19:18:31,325] multiqc [INFO ] MultiQC complete