diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.094008s] #Target sequences to report alignments for: 1 Opening the input file... [0.000118s] Opening the output file... [0.000357s] Loading query sequences... [2.81092s] Masking queries... [2.10445s] Building query seed set... [0.05947s] Algorithm: Double-indexed Building query histograms... [0.403838s] Allocating buffers... [0.000514s] Loading reference sequences... [3.59477s] Masking reference... [0.958382s] Initializing temporary storage... [0.013097s] Building reference histograms... [0.16822s] Allocating buffers... [9.2e-05s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.123607s] Building query seed array... [0.245605s] Computing hash join... [0.140661s] Building seed filter... [0.005375s] Searching alignments... [0.553078s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.197043s] Building query seed array... [0.295072s] Computing hash join... [0.154161s] Building seed filter... [0.005031s] Searching alignments... [0.436821s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.149824s] Building query seed array... [0.299226s] Computing hash join... [0.148704s] Building seed filter... [0.005094s] Searching alignments... [0.401826s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.116242s] Building query seed array... [0.249932s] Computing hash join... [0.149521s] Building seed filter... [0.005027s] Searching alignments... [0.411104s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.116509s] Building query seed array... [0.240407s] Computing hash join... [0.149798s] Building seed filter... [0.004968s] Searching alignments... [0.360053s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.146298s] Building query seed array... [0.296673s] Computing hash join... [0.15266s] Building seed filter... [0.005099s] Searching alignments... [0.347243s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.155822s] Building query seed array... [0.326849s] Computing hash join... [0.144817s] Building seed filter... [0.004902s] Searching alignments... [0.421091s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.114668s] Building query seed array... [0.242227s] Computing hash join... [0.142655s] Building seed filter... [0.004886s] Searching alignments... [0.329172s] Deallocating buffers... [0.00144s] Computing alignments... [6.85064s] Deallocating reference... [0.001139s] Loading reference sequences... [4.6e-05s] Deallocating buffers... [0.001968s] Deallocating queries... [0.002266s] Loading query sequences... [2.6e-05s] Closing the input file... [2.7e-05s] Closing the output file... [0.000522s] Closing the database file... [2e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 24.8718s Reported 126858 pairwise alignments, 130346 HSPs. 126858 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.008279s] #Target sequences to report alignments for: 1 Opening the input file... [8.9e-05s] Opening the output file... [0.001924s] Loading query sequences... [1.62696s] Masking queries... [1.30047s] Building query seed set... [0.062613s] Algorithm: Double-indexed Building query histograms... [0.251204s] Allocating buffers... [0.000518s] Loading reference sequences... [0.652984s] Masking reference... [0.904756s] Initializing temporary storage... [0.0033s] Building reference histograms... [0.167446s] Allocating buffers... [9.1e-05s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.123759s] Building query seed array... [0.144773s] Computing hash join... [0.098888s] Building seed filter... [0.003148s] Searching alignments... [0.216503s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.148213s] Building query seed array... [0.179052s] Computing hash join... [0.106078s] Building seed filter... [0.003402s] Searching alignments... [0.18893s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.150499s] Building query seed array... [0.174293s] Computing hash join... [0.100369s] Building seed filter... [0.003094s] Searching alignments... [0.178068s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.11618s] Building query seed array... [0.137377s] Computing hash join... [0.103464s] Building seed filter... [0.003272s] Searching alignments... [0.17051s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.126966s] Building query seed array... [0.139996s] Computing hash join... [0.09981s] Building seed filter... [0.003096s] Searching alignments... [0.248917s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.146632s] Building query seed array... [0.201479s] Computing hash join... [0.099006s] Building seed filter... [0.003086s] Searching alignments... [0.155202s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.175697s] Building query seed array... [0.177325s] Computing hash join... [0.105719s] Building seed filter... [0.00319s] Searching alignments... [0.154348s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.114907s] Building query seed array... [0.13854s] Computing hash join... [0.098804s] Building seed filter... [0.003037s] Searching alignments... [0.141707s] Deallocating buffers... [0.001411s] Computing alignments... [3.98635s] Deallocating reference... [0.001316s] Loading reference sequences... [4.4e-05s] Deallocating buffers... [0.001235s] Deallocating queries... [0.001599s] Loading query sequences... [2.4e-05s] Closing the input file... [2.4e-05s] Closing the output file... [0.000174s] Closing the database file... [1.9e-05s] Deallocating taxonomy... [9e-06s] Total time = 13.6643s Reported 48551 pairwise alignments, 50038 HSPs. 48551 queries aligned.