cold	cold_01	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.113.D9.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.113.D9.uninfected.cold.megan_R2.fq
warm	warm_01	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.127.D9.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.127.D9.infected.warm.megan_R2.fq
cold	cold_02	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.151.D9.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.151.D9.infected.cold.megan_R2.fq
warm	warm_02	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.173.D9.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.173.D9.infected.warm.megan_R2.fq
cold	cold_03	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.221.D12.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.221.D12.uninfected.cold.megan_R2.fq
cold	cold_04	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.222.D12.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.222.D12.uninfected.cold.megan_R2.fq
cold	cold_05	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.254.D12.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.254.D12.infected.cold.megan_R2.fq
warm	warm_03	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.272.D12.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.272.D12.infected.warm.megan_R2.fq
warm	warm_04	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.280.D12.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.280.D12.infected.warm.megan_R2.fq
warm	warm_05	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.294.D12.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.294.D12.infected.warm.megan_R2.fq
cold	cold_06	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.425.D26.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.425.D26.uninfected.cold.megan_R2.fq
cold	cold_07	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.427.D26.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.427.D26.uninfected.cold.megan_R2.fq
cold	cold_08	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.445.D26.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.445.D26.infected.cold.megan_R2.fq
warm	warm_06	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.72.D9.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.72.D9.infected.warm.megan_R2.fq
cold	cold_09	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.73.D9.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/cold-warm/20200413.C_bairdi.73.D9.uninfected.cold.megan_R2.fq