diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.129226s] #Target sequences to report alignments for: 1 Opening the input file... [0.038078s] Opening the output file... [0.000353s] Loading query sequences... [0.093023s] Masking queries... [0.064176s] Building query seed set... [0.048939s] Algorithm: Double-indexed Building query histograms... [0.025566s] Allocating buffers... [0.000171s] Loading reference sequences... [3.8979s] Masking reference... [0.856195s] Initializing temporary storage... [0.012106s] Building reference histograms... [0.219771s] Allocating buffers... [0.00011s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.168553s] Building query seed array... [0.011637s] Computing hash join... [0.043495s] Building seed filter... [0.001145s] Searching alignments... [0.041588s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.155326s] Building query seed array... [0.010729s] Computing hash join... [0.025265s] Building seed filter... [0.001001s] Searching alignments... [0.024355s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.150534s] Building query seed array... [0.006342s] Computing hash join... [0.023312s] Building seed filter... [0.001015s] Searching alignments... [0.018094s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.119009s] Building query seed array... [0.008604s] Computing hash join... [0.023587s] Building seed filter... [0.001055s] Searching alignments... [0.024988s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.116237s] Building query seed array... [0.008618s] Computing hash join... [0.024423s] Building seed filter... [0.001002s] Searching alignments... [0.01656s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.160828s] Building query seed array... [0.012455s] Computing hash join... [0.030373s] Building seed filter... [0.000992s] Searching alignments... [0.024266s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.17477s] Building query seed array... [0.017225s] Computing hash join... [0.036948s] Building seed filter... [0.001191s] Searching alignments... [0.024819s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.14013s] Building query seed array... [0.00942s] Computing hash join... [0.032841s] Building seed filter... [0.001205s] Searching alignments... [0.063355s] Deallocating buffers... [0.001894s] Computing alignments... [0.584024s] Deallocating reference... [0.002338s] Loading reference sequences... [6.7e-05s] Deallocating buffers... [0.000573s] Deallocating queries... [0.000529s] Loading query sequences... [5.5e-05s] Closing the input file... [4.8e-05s] Closing the output file... [0.000372s] Closing the database file... [8.1e-05s] Deallocating taxonomy... [2.1e-05s] Total time = 7.73745s Reported 3907 pairwise alignments, 3925 HSPs. 3907 queries aligned.