diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.140406s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.048436s] Opening the output file... [0.00036s] Loading query sequences... [91.463s] Masking queries... [64.487s] Building query seed set... [0.4119s] Algorithm: Double-indexed Building query histograms... [2.77787s] Allocating buffers... [0.000706s] Loading reference sequences... [47.8508s] Masking reference... [59.0603s] Initializing temporary storage... [0.269188s] Building reference histograms... [12.4246s] Allocating buffers... [0.000216s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.91848s] Building query seed array... [1.81553s] Computing hash join... [4.16268s] Building seed filter... [0.065894s] Searching alignments... [229.147s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.4107s] Building query seed array... [2.15469s] Computing hash join... [4.13649s] Building seed filter... [0.065402s] Searching alignments... [249.854s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5909s] Building query seed array... [2.09942s] Computing hash join... [4.0669s] Building seed filter... [0.067275s] Searching alignments... [206.417s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.675s] Building query seed array... [1.75658s] Computing hash join... [4.13477s] Building seed filter... [0.071702s] Searching alignments... [211.871s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.079s] Building query seed array... [1.75001s] Computing hash join... [3.95253s] Building seed filter... [0.06357s] Searching alignments... [159.628s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2565s] Building query seed array... [1.95935s] Computing hash join... [3.99584s] Building seed filter... [0.060031s] Searching alignments... [131.939s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.5006s] Building query seed array... [2.02718s] Computing hash join... [3.95514s] Building seed filter... [0.059391s] Searching alignments... [152.937s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.58167s] Building query seed array... [1.65135s] Computing hash join... [3.94791s] Building seed filter... [0.063827s] Searching alignments... [149.968s] Deallocating buffers... [0.114505s] Opening temporary output file... [0.001516s] Computing alignments... [580.99s] Deallocating reference... [0.076983s] Loading reference sequences... [45.1644s] Masking reference... [58.0121s] Initializing temporary storage... [0.004379s] Building reference histograms... [12.7033s] Allocating buffers... [0.000189s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.43753s] Building query seed array... [1.88613s] Computing hash join... [4.10575s] Building seed filter... [0.061895s] Searching alignments... [178.359s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3292s] Building query seed array... [2.14814s] Computing hash join... [4.16055s] Building seed filter... [0.060572s] Searching alignments... [181.015s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5288s] Building query seed array... [2.22337s] Computing hash join... [4.08019s] Building seed filter... [0.064994s] Searching alignments... [148.028s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.69722s] Building query seed array... [1.82754s] Computing hash join... [4.15729s] Building seed filter... [0.063966s] Searching alignments... [155.584s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.78557s] Building query seed array... [1.68176s] Computing hash join... [4.03374s] Building seed filter... [0.067443s] Searching alignments... [119.851s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1908s] Building query seed array... [1.95805s] Computing hash join... [4.0783s] Building seed filter... [0.06124s] Searching alignments... [93.685s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3266s] Building query seed array... [2.01528s] Computing hash join... [4.07113s] Building seed filter... [0.061035s] Searching alignments... [117.916s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.61461s] Building query seed array... [1.6916s] Computing hash join... [3.99705s] Building seed filter... [0.065962s] Searching alignments... [122.459s] Deallocating buffers... [0.112819s] Opening temporary output file... [0.00139s] Computing alignments... [466.208s] Deallocating reference... [0.086204s] Loading reference sequences... [436.229s] Masking reference... [57.6547s] Initializing temporary storage... [0.003993s] Building reference histograms... [13.1882s] Allocating buffers... [0.000187s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.33185s] Building query seed array... [1.89901s] Computing hash join... [4.12251s] Building seed filter... [0.073647s] Searching alignments... [210.384s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2943s] Building query seed array... [2.19091s] Computing hash join... [4.07874s] Building seed filter... [0.061459s] Searching alignments... [216.072s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5555s] Building query seed array... [2.19568s] Computing hash join... [4.08159s] Building seed filter... [0.06381s] Searching alignments... [186.3s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.64933s] Building query seed array... [1.76734s] Computing hash join... [4.11354s] Building seed filter... [0.062792s] Searching alignments... [176.217s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.64758s] Building query seed array... [1.60636s] Computing hash join... [4.01472s] Building seed filter... [0.060531s] Searching alignments... [139.133s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1408s] Building query seed array... [1.92s] Computing hash join... [3.95353s] Building seed filter... [0.058428s] Searching alignments... [107.947s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4572s] Building query seed array... [2.01228s] Computing hash join... [3.97591s] Building seed filter... [0.056622s] Searching alignments... [137.542s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.64042s] Building query seed array... [1.59307s] Computing hash join... [3.96561s] Building seed filter... [0.06103s] Searching alignments... [130.776s] Deallocating buffers... [0.115563s] Opening temporary output file... [0.001258s] Computing alignments... [567.762s] Deallocating reference... [0.069607s] Loading reference sequences... [430.873s] Masking reference... [57.5746s] Initializing temporary storage... [0.004087s] Building reference histograms... [12.6511s] Allocating buffers... [0.000197s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.99261s] Building query seed array... [1.83892s] Computing hash join... [4.12404s] Building seed filter... [0.06568s] Searching alignments... [166.161s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2742s] Building query seed array... [2.14201s] Computing hash join... [4.22016s] Building seed filter... [0.063011s] Searching alignments... [140.788s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5191s] Building query seed array... [2.23782s] Computing hash join... [4.05467s] Building seed filter... [0.065496s] Searching alignments... [113.49s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.66188s] Building query seed array... [1.76009s] Computing hash join... [4.05416s] Building seed filter... [0.063836s] Searching alignments... [115.407s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.68523s] Building query seed array... [1.64236s] Computing hash join... [3.95907s] Building seed filter... [0.058669s] Searching alignments... [95.8893s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2682s] Building query seed array... [1.94775s] Computing hash join... [4.06182s] Building seed filter... [0.060254s] Searching alignments... [84.5427s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3818s] Building query seed array... [2.02607s] Computing hash join... [3.96738s] Building seed filter... [0.066249s] Searching alignments... [83.7193s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.55711s] Building query seed array... [1.66549s] Computing hash join... [3.9953s] Building seed filter... [0.06419s] Searching alignments... [76.1419s] Deallocating buffers... [0.119974s] Opening temporary output file... [0.001684s] Computing alignments... [401.967s] Deallocating reference... [0.066387s] Loading reference sequences... [438.911s] Masking reference... [57.8464s] Initializing temporary storage... [0.004825s] Building reference histograms... [13.3237s] Allocating buffers... [0.000203s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.93564s] Building query seed array... [1.81038s] Computing hash join... [4.04378s] Building seed filter... [0.065823s] Searching alignments... [143.167s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.3448s] Building query seed array... [2.16403s] Computing hash join... [4.10361s] Building seed filter... [0.070964s] Searching alignments... [139.07s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.795s] Building query seed array... [2.21449s] Computing hash join... [4.11218s] Building seed filter... [0.068316s] Searching alignments... [118.383s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.69034s] Building query seed array... [1.80963s] Computing hash join... [4.0798s] Building seed filter... [0.060081s] Searching alignments... [113.198s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.65606s] Building query seed array... [1.63397s] Computing hash join... [4.00243s] Building seed filter... [0.061328s] Searching alignments... [94.8293s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1574s] Building query seed array... [2.3067s] Computing hash join... [4.07417s] Building seed filter... [0.057779s] Searching alignments... [78.4474s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3284s] Building query seed array... [1.94599s] Computing hash join... [4.06015s] Building seed filter... [0.06021s] Searching alignments... [82.6691s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.53884s] Building query seed array... [1.64607s] Computing hash join... [3.98911s] Building seed filter... [0.064929s] Searching alignments... [79.8741s] Deallocating buffers... [0.123017s] Opening temporary output file... [0.023702s] Computing alignments... [374.969s] Deallocating reference... [0.06334s] Loading reference sequences... [16.8641s] Masking reference... [21.7591s] Initializing temporary storage... [0.005124s] Building reference histograms... [4.81974s] Allocating buffers... [0.00019s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.40418s] Building query seed array... [1.78404s] Computing hash join... [1.85965s] Building seed filter... [0.036342s] Searching alignments... [70.0364s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22825s] Building query seed array... [2.1086s] Computing hash join... [1.89394s] Building seed filter... [0.036906s] Searching alignments... [75.8122s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.3148s] Building query seed array... [2.14431s] Computing hash join... [1.88201s] Building seed filter... [0.036739s] Searching alignments... [59.918s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.45064s] Building query seed array... [1.75762s] Computing hash join... [1.91171s] Building seed filter... [0.039139s] Searching alignments... [63.7255s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.28595s] Building query seed array... [1.59952s] Computing hash join... [1.79629s] Building seed filter... [0.034888s] Searching alignments... [46.5497s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.24335s] Building query seed array... [1.91921s] Computing hash join... [1.81285s] Building seed filter... [0.03532s] Searching alignments... [40.999s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27701s] Building query seed array... [1.90011s] Computing hash join... [1.78781s] Building seed filter... [0.036706s] Searching alignments... [47.1875s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.3211s] Building query seed array... [1.59227s] Computing hash join... [1.75659s] Building seed filter... [0.034844s] Searching alignments... [47.2085s] Deallocating buffers... [0.045239s] Opening temporary output file... [0.044356s] Computing alignments... [188.756s] Deallocating reference... [0.029854s] Loading reference sequences... [0.095659s] Deallocating buffers... [0.122414s] Joining output blocks... [299.874s] Deallocating queries... [0.047058s] Loading query sequences... [3.5e-05s] Closing the input file... [4.9e-05s] Closing the output file... [0.365825s] Closing the database file... [3e-05s] Deallocating taxonomy... [2.8e-05s] Total time = 11634.8s Reported 2992262966 pairwise alignments, 2992350550 HSPs. 4054660 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.049405s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.046621s] Opening the output file... [0.000343s] Loading query sequences... [92.04s] Masking queries... [62.0924s] Building query seed set... [0.363904s] Algorithm: Double-indexed Building query histograms... [2.81762s] Allocating buffers... [0.000772s] Loading reference sequences... [47.1416s] Masking reference... [58.5061s] Initializing temporary storage... [0.004393s] Building reference histograms... [13.4304s] Allocating buffers... [0.000205s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.00887s] Building query seed array... [1.828s] Computing hash join... [4.21134s] Building seed filter... [0.075129s] Searching alignments... [220.887s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2944s] Building query seed array... [2.05749s] Computing hash join... [4.1405s] Building seed filter... [0.07609s] Searching alignments... [274.424s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.6042s] Building query seed array... [2.24016s] Computing hash join... [4.20312s] Building seed filter... [0.066007s] Searching alignments... [146.908s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.69088s] Building query seed array... [1.75746s] Computing hash join... [4.15798s] Building seed filter... [0.07993s] Searching alignments... [152.777s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.7545s] Building query seed array... [1.85213s] Computing hash join... [4.05483s] Building seed filter... [0.069818s] Searching alignments... [142.658s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2355s] Building query seed array... [1.94058s] Computing hash join... [4.08024s] Building seed filter... [0.067307s] Searching alignments... [124.669s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4347s] Building query seed array... [1.93704s] Computing hash join... [4.05622s] Building seed filter... [0.065575s] Searching alignments... [107.573s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.59314s] Building query seed array... [1.58483s] Computing hash join... [3.96183s] Building seed filter... [0.068932s] Searching alignments... [271.433s] Deallocating buffers... [0.12041s] Opening temporary output file... [0.001057s] Computing alignments... [558.35s] Deallocating reference... [0.095462s] Loading reference sequences... [482.804s] Masking reference... [57.6119s] Initializing temporary storage... [0.003936s] Building reference histograms... [12.3799s] Allocating buffers... [0.000186s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.22144s] Building query seed array... [1.90297s] Computing hash join... [4.16578s] Building seed filter... [0.069482s] Searching alignments... [167.962s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.4363s] Building query seed array... [2.15224s] Computing hash join... [4.22896s] Building seed filter... [0.066222s] Searching alignments... [188.011s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.8359s] Building query seed array... [2.20598s] Computing hash join... [4.15212s] Building seed filter... [0.066752s] Searching alignments... [116.247s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.81294s] Building query seed array... [1.80021s] Computing hash join... [4.10424s] Building seed filter... [0.070722s] Searching alignments... [109.257s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.68707s] Building query seed array... [1.59979s] Computing hash join... [4.10156s] Building seed filter... [0.069203s] Searching alignments... [114.555s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.483s] Building query seed array... [2.00457s] Computing hash join... [4.09984s] Building seed filter... [0.063077s] Searching alignments... [92.3215s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4778s] Building query seed array... [1.98259s] Computing hash join... [4.07109s] Building seed filter... [0.067915s] Searching alignments... [126.021s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.63688s] Building query seed array... [1.59594s] Computing hash join... [3.99773s] Building seed filter... [0.070804s] Searching alignments... [181.907s] Deallocating buffers... [0.128709s] Opening temporary output file... [0.004618s] Computing alignments... [424.135s] Deallocating reference... [0.071457s] Loading reference sequences... [503.048s] Masking reference... [57.7174s] Initializing temporary storage... [0.003789s] Building reference histograms... [12.6867s] Allocating buffers... [0.000207s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.97814s] Building query seed array... [1.86469s] Computing hash join... [4.12483s] Building seed filter... [0.074285s] Searching alignments... [196.379s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2853s] Building query seed array... [2.28531s] Computing hash join... [4.19968s] Building seed filter... [0.072074s] Searching alignments... [230.636s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.469s] Building query seed array... [2.23806s] Computing hash join... [4.13927s] Building seed filter... [0.07213s] Searching alignments... [137.555s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.63864s] Building query seed array... [1.80705s] Computing hash join... [4.16059s] Building seed filter... [0.070418s] Searching alignments... [124.621s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.66541s] Building query seed array... [1.65125s] Computing hash join... [4.00725s] Building seed filter... [0.065378s] Searching alignments... [133.097s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1581s] Building query seed array... [1.99239s] Computing hash join... [4.05051s] Building seed filter... [0.065362s] Searching alignments... [105.699s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.6048s] Building query seed array... [1.99423s] Computing hash join... [4.08235s] Building seed filter... [0.063393s] Searching alignments... [147.182s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.80383s] Building query seed array... [1.67389s] Computing hash join... [4.10149s] Building seed filter... [0.066356s] Searching alignments... [219.403s] Deallocating buffers... [0.1359s] Opening temporary output file... [0.001338s] Computing alignments... [527.736s] Deallocating reference... [0.071577s] Loading reference sequences... [446.387s] Masking reference... [58.1341s] Initializing temporary storage... [0.004393s] Building reference histograms... [12.5118s] Allocating buffers... [0.000191s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.14469s] Building query seed array... [1.84618s] Computing hash join... [4.16474s] Building seed filter... [0.071701s] Searching alignments... [165.767s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3155s] Building query seed array... [2.15538s] Computing hash join... [4.16224s] Building seed filter... [0.070559s] Searching alignments... [146.439s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4863s] Building query seed array... [2.19482s] Computing hash join... [4.14932s] Building seed filter... [0.071307s] Searching alignments... [105.73s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.65703s] Building query seed array... [1.8096s] Computing hash join... [4.14225s] Building seed filter... [0.069079s] Searching alignments... [112.988s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.70266s] Building query seed array... [1.59767s] Computing hash join... [4.05985s] Building seed filter... [0.064781s] Searching alignments... [96.2354s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2143s] Building query seed array... [1.93894s] Computing hash join... [4.11426s] Building seed filter... [0.067871s] Searching alignments... [86.4155s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4107s] Building query seed array... [1.99094s] Computing hash join... [4.03985s] Building seed filter... [0.066691s] Searching alignments... [91.5708s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.62974s] Building query seed array... [1.60673s] Computing hash join... [4.01259s] Building seed filter... [0.078439s] Searching alignments... [120.285s] Deallocating buffers... [0.12576s] Opening temporary output file... [0.001038s] Computing alignments... [367.016s] Deallocating reference... [0.065475s] Loading reference sequences... [387.17s] Masking reference... [57.9565s] Initializing temporary storage... [0.004478s] Building reference histograms... [12.1876s] Allocating buffers... [0.000174s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.99261s] Building query seed array... [1.803s] Computing hash join... [4.1524s] Building seed filter... [0.082392s] Searching alignments... [135.537s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.3136s] Building query seed array... [2.08491s] Computing hash join... [4.20673s] Building seed filter... [0.072853s] Searching alignments... [151.499s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4482s] Building query seed array... [2.09568s] Computing hash join... [4.22733s] Building seed filter... [0.07366s] Searching alignments... [112.251s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.64975s] Building query seed array... [1.74981s] Computing hash join... [4.17854s] Building seed filter... [0.070495s] Searching alignments... [104.198s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.72003s] Building query seed array... [1.66202s] Computing hash join... [4.01497s] Building seed filter... [0.064648s] Searching alignments... [113.863s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.232s] Building query seed array... [1.87439s] Computing hash join... [4.09001s] Building seed filter... [0.063994s] Searching alignments... [77.4947s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3263s] Building query seed array... [1.93228s] Computing hash join... [4.06236s] Building seed filter... [0.065821s] Searching alignments... [92.1532s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.59487s] Building query seed array... [1.69571s] Computing hash join... [4.06485s] Building seed filter... [0.065248s] Searching alignments... [91.5126s] Deallocating buffers... [0.117452s] Opening temporary output file... [0.001391s] Computing alignments... [357.865s] Deallocating reference... [0.07045s] Loading reference sequences... [18.8526s] Masking reference... [21.1923s] Initializing temporary storage... [0.004479s] Building reference histograms... [4.74918s] Allocating buffers... [0.000194s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.25189s] Building query seed array... [1.76859s] Computing hash join... [1.84929s] Building seed filter... [0.047651s] Searching alignments... [69.1639s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22115s] Building query seed array... [2.09541s] Computing hash join... [1.89811s] Building seed filter... [0.038584s] Searching alignments... [88.5052s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.45584s] Building query seed array... [2.11497s] Computing hash join... [1.92256s] Building seed filter... [0.039375s] Searching alignments... [51.6874s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26416s] Building query seed array... [1.76307s] Computing hash join... [1.9232s] Building seed filter... [0.041333s] Searching alignments... [47.4581s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.27002s] Building query seed array... [1.6465s] Computing hash join... [1.80566s] Building seed filter... [0.037077s] Searching alignments... [42.4675s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.20233s] Building query seed array... [1.9097s] Computing hash join... [1.82165s] Building seed filter... [0.039583s] Searching alignments... [36.0858s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.38148s] Building query seed array... [1.96482s] Computing hash join... [1.81964s] Building seed filter... [0.036267s] Searching alignments... [52.509s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.26918s] Building query seed array... [1.62721s] Computing hash join... [1.79733s] Building seed filter... [0.038503s] Searching alignments... [80.704s] Deallocating buffers... [0.046172s] Opening temporary output file... [0.028388s] Computing alignments... [178.105s] Deallocating reference... [0.028789s] Loading reference sequences... [0.026559s] Deallocating buffers... [0.011276s] Joining output blocks... [282.213s] Deallocating queries... [0.043887s] Loading query sequences... [3.1e-05s] Closing the input file... [5e-05s] Closing the output file... [0.410178s] Closing the database file... [4.2e-05s] Deallocating taxonomy... [9e-06s] Total time = 11931.6s Reported 2834126759 pairwise alignments, 2834204227 HSPs. 4027862 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.231112s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.116543s] Opening the output file... [0.000328s] Loading query sequences... [84.509s] Masking queries... [64.781s] Building query seed set... [0.446524s] Algorithm: Double-indexed Building query histograms... [2.70881s] Allocating buffers... [0.000707s] Loading reference sequences... [53.5216s] Masking reference... [58.8846s] Initializing temporary storage... [0.005517s] Building reference histograms... [12.449s] Allocating buffers... [0.00021s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.94576s] Building query seed array... [1.8002s] Computing hash join... [4.10757s] Building seed filter... [0.068071s] Searching alignments... [79.3609s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2916s] Building query seed array... [2.07264s] Computing hash join... [4.08775s] Building seed filter... [0.06062s] Searching alignments... [50.8048s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4526s] Building query seed array... [2.16204s] Computing hash join... [4.18787s] Building seed filter... [0.065888s] Searching alignments... [49.7506s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.66154s] Building query seed array... [1.85589s] Computing hash join... [4.14139s] Building seed filter... [0.062487s] Searching alignments... [46.3459s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.69573s] Building query seed array... [1.58688s] Computing hash join... [4.01392s] Building seed filter... [0.059567s] Searching alignments... [40.8716s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1406s] Building query seed array... [1.87235s] Computing hash join... [4.01687s] Building seed filter... [0.059514s] Searching alignments... [31.8327s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3572s] Building query seed array... [1.89753s] Computing hash join... [3.98918s] Building seed filter... [0.057217s] Searching alignments... [36.8748s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.5796s] Building query seed array... [1.54934s] Computing hash join... [3.98924s] Building seed filter... [0.069084s] Searching alignments... [31.7304s] Deallocating buffers... [0.117957s] Opening temporary output file... [0.001003s] Computing alignments... [137.148s] Deallocating reference... [0.078951s] Loading reference sequences... [422.807s] Masking reference... [57.8137s] Initializing temporary storage... [0.004035s] Building reference histograms... [13.2788s] Allocating buffers... [0.000192s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.84098s] Building query seed array... [1.76507s] Computing hash join... [4.21562s] Building seed filter... [0.064981s] Searching alignments... [66.194s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2324s] Building query seed array... [2.04157s] Computing hash join... [4.12226s] Building seed filter... [0.063817s] Searching alignments... [42.1327s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5233s] Building query seed array... [2.1759s] Computing hash join... [4.14673s] Building seed filter... [0.063418s] Searching alignments... [42.2678s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.63676s] Building query seed array... [1.76173s] Computing hash join... [4.1806s] Building seed filter... [0.062718s] Searching alignments... [38.8821s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.61717s] Building query seed array... [1.60724s] Computing hash join... [4.04734s] Building seed filter... [0.063373s] Searching alignments... [31.8361s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.3337s] Building query seed array... [2.05706s] Computing hash join... [4.0615s] Building seed filter... [0.055712s] Searching alignments... [26.6078s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4394s] Building query seed array... [1.92551s] Computing hash join... [4.0153s] Building seed filter... [0.060577s] Searching alignments... [29.9011s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.53887s] Building query seed array... [1.5724s] Computing hash join... [4.01719s] Building seed filter... [0.055556s] Searching alignments... [26.9746s] Deallocating buffers... [0.119123s] Opening temporary output file... [0.000641s] Computing alignments... [106.549s] Deallocating reference... [0.071426s] Loading reference sequences... [416.257s] Masking reference... [58.0834s] Initializing temporary storage... [0.004314s] Building reference histograms... [12.7611s] Allocating buffers... [0.000176s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.00777s] Building query seed array... [1.76233s] Computing hash join... [4.13624s] Building seed filter... [0.064198s] Searching alignments... [76.4099s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2687s] Building query seed array... [2.09525s] Computing hash join... [4.1734s] Building seed filter... [0.060508s] Searching alignments... [48.5163s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5381s] Building query seed array... [2.18022s] Computing hash join... [4.10447s] Building seed filter... [0.0776s] Searching alignments... [46.806s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.61314s] Building query seed array... [1.78464s] Computing hash join... [4.08957s] Building seed filter... [0.059894s] Searching alignments... [45.3066s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.65743s] Building query seed array... [1.55105s] Computing hash join... [3.96907s] Building seed filter... [0.063147s] Searching alignments... [37.0498s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.172s] Building query seed array... [1.91403s] Computing hash join... [3.99898s] Building seed filter... [0.061405s] Searching alignments... [29.4958s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3669s] Building query seed array... [1.9733s] Computing hash join... [4.07888s] Building seed filter... [0.062248s] Searching alignments... [34.9989s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.59392s] Building query seed array... [1.60679s] Computing hash join... [4.0096s] Building seed filter... [0.070612s] Searching alignments... [30.4458s] Deallocating buffers... [0.106489s] Opening temporary output file... [0.000946s] Computing alignments... [137.063s] Deallocating reference... [0.085024s] Loading reference sequences... [413.872s] Masking reference... [57.7362s] Initializing temporary storage... [0.003862s] Building reference histograms... [13.4321s] Allocating buffers... [0.000199s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.32983s] Building query seed array... [1.86578s] Computing hash join... [4.11154s] Building seed filter... [0.073843s] Searching alignments... [58.0909s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.279s] Building query seed array... [2.01486s] Computing hash join... [4.22167s] Building seed filter... [0.064036s] Searching alignments... [40.2325s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5266s] Building query seed array... [2.16385s] Computing hash join... [4.13268s] Building seed filter... [0.068251s] Searching alignments... [37.0254s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.67717s] Building query seed array... [2.12257s] Computing hash join... [4.15704s] Building seed filter... [0.067539s] Searching alignments... [36.1489s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.00774s] Building query seed array... [1.70808s] Computing hash join... [3.97s] Building seed filter... [0.061274s] Searching alignments... [29.4184s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2396s] Building query seed array... [1.89834s] Computing hash join... [4.00798s] Building seed filter... [0.063927s] Searching alignments... [24.8165s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.5237s] Building query seed array... [1.93694s] Computing hash join... [4.09595s] Building seed filter... [0.060877s] Searching alignments... [27.7323s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.6278s] Building query seed array... [1.56925s] Computing hash join... [3.95693s] Building seed filter... [0.064449s] Searching alignments... [24.1447s] Deallocating buffers... [0.112582s] Opening temporary output file... [0.001118s] Computing alignments... [97.7833s] Deallocating reference... [0.077464s] Loading reference sequences... [419.377s] Masking reference... [58.0448s] Initializing temporary storage... [0.004136s] Building reference histograms... [12.8061s] Allocating buffers... [0.000189s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.99436s] Building query seed array... [1.81341s] Computing hash join... [4.17186s] Building seed filter... [0.067693s] Searching alignments... [63.0634s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.668s] Building query seed array... [2.15582s] Computing hash join... [4.09488s] Building seed filter... [0.062645s] Searching alignments... [42.5328s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.3974s] Building query seed array... [2.06984s] Computing hash join... [4.12675s] Building seed filter... [0.065645s] Searching alignments... [42.5487s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.63054s] Building query seed array... [1.75881s] Computing hash join... [4.17846s] Building seed filter... [0.065521s] Searching alignments... [40.7292s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.65246s] Building query seed array... [1.55004s] Computing hash join... [3.98827s] Building seed filter... [0.062387s] Searching alignments... [30.3096s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2035s] Building query seed array... [1.92644s] Computing hash join... [4.09483s] Building seed filter... [0.058146s] Searching alignments... [29.6861s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.4931s] Building query seed array... [1.85679s] Computing hash join... [3.991s] Building seed filter... [0.057681s] Searching alignments... [34.6062s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.67379s] Building query seed array... [1.54048s] Computing hash join... [4.03903s] Building seed filter... [0.061691s] Searching alignments... [25.2223s] Deallocating buffers... [0.112616s] Opening temporary output file... [0.001313s] Computing alignments... [105.035s] Deallocating reference... [0.063201s] Loading reference sequences... [16.7785s] Masking reference... [21.8317s] Initializing temporary storage... [0.003847s] Building reference histograms... [4.99476s] Allocating buffers... [0.000188s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.42443s] Building query seed array... [1.728s] Computing hash join... [1.79549s] Building seed filter... [0.040879s] Searching alignments... [25.108s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.24034s] Building query seed array... [2.02822s] Computing hash join... [1.86246s] Building seed filter... [0.037677s] Searching alignments... [19.3111s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.33759s] Building query seed array... [2.12783s] Computing hash join... [1.84306s] Building seed filter... [0.039007s] Searching alignments... [18.0151s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.42203s] Building query seed array... [1.76751s] Computing hash join... [1.8574s] Building seed filter... [0.03782s] Searching alignments... [15.7366s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25799s] Building query seed array... [1.61724s] Computing hash join... [1.77713s] Building seed filter... [0.031665s] Searching alignments... [13.1444s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.17741s] Building query seed array... [1.81879s] Computing hash join... [1.78273s] Building seed filter... [0.033615s] Searching alignments... [10.3869s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.2791s] Building query seed array... [1.90179s] Computing hash join... [1.77426s] Building seed filter... [0.033874s] Searching alignments... [13.145s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.40603s] Building query seed array... [1.59493s] Computing hash join... [1.77426s] Building seed filter... [0.033881s] Searching alignments... [11.1709s] Deallocating buffers... [0.043848s] Opening temporary output file... [0.012871s] Computing alignments... [64.5043s] Deallocating reference... [0.028297s] Loading reference sequences... [0.000417s] Deallocating buffers... [0.011946s] Joining output blocks... [91.9133s] Deallocating queries... [0.035005s] Loading query sequences... [2.6e-05s] Closing the input file... [4.6e-05s] Closing the output file... [0.248643s] Closing the database file... [2.7e-05s] Deallocating taxonomy... [1e-05s] Total time = 5455.86s Reported 497001395 pairwise alignments, 497056540 HSPs. 2645757 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.069794s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.092671s] Opening the output file... [0.0007s] Loading query sequences... [85.6211s] Masking queries... [58.0563s] Building query seed set... [0.466895s] Algorithm: Double-indexed Building query histograms... [2.70008s] Allocating buffers... [0.000697s] Loading reference sequences... [47.5663s] Masking reference... [59.2956s] Initializing temporary storage... [0.003769s] Building reference histograms... [12.0966s] Allocating buffers... [0.0002s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.91261s] Building query seed array... [1.73156s] Computing hash join... [4.1476s] Building seed filter... [0.068086s] Searching alignments... [79.6288s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3658s] Building query seed array... [2.04186s] Computing hash join... [4.1737s] Building seed filter... [0.06979s] Searching alignments... [50.1239s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.6035s] Building query seed array... [2.13274s] Computing hash join... [4.16857s] Building seed filter... [0.067703s] Searching alignments... [49.0872s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.65687s] Building query seed array... [1.74741s] Computing hash join... [4.14685s] Building seed filter... [0.064136s] Searching alignments... [45.4654s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.61637s] Building query seed array... [1.57385s] Computing hash join... [4.0045s] Building seed filter... [0.064152s] Searching alignments... [40.6001s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.13s] Building query seed array... [1.87599s] Computing hash join... [4.05967s] Building seed filter... [0.061809s] Searching alignments... [31.4266s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4203s] Building query seed array... [1.97026s] Computing hash join... [4.10214s] Building seed filter... [0.059957s] Searching alignments... [37.3843s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.57398s] Building query seed array... [1.58949s] Computing hash join... [4.08375s] Building seed filter... [0.07118s] Searching alignments... [32.2722s] Deallocating buffers... [0.112994s] Opening temporary output file... [0.001142s] Computing alignments... [134.184s] Deallocating reference... [0.096012s] Loading reference sequences... [437.131s] Masking reference... [58.0371s] Initializing temporary storage... [0.004625s] Building reference histograms... [12.6301s] Allocating buffers... [0.000196s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.98616s] Building query seed array... [1.72376s] Computing hash join... [4.1475s] Building seed filter... [0.071945s] Searching alignments... [67.0557s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.394s] Building query seed array... [2.1218s] Computing hash join... [4.22255s] Building seed filter... [0.063152s] Searching alignments... [41.8723s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4986s] Building query seed array... [2.14379s] Computing hash join... [4.24311s] Building seed filter... [0.073289s] Searching alignments... [40.3625s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.6778s] Building query seed array... [1.74186s] Computing hash join... [4.11251s] Building seed filter... [0.068086s] Searching alignments... [38.5344s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.75569s] Building query seed array... [1.65619s] Computing hash join... [4.01692s] Building seed filter... [0.059978s] Searching alignments... [31.7065s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1569s] Building query seed array... [1.81724s] Computing hash join... [4.02427s] Building seed filter... [0.07006s] Searching alignments... [27.2128s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.6649s] Building query seed array... [1.93096s] Computing hash join... [4.06035s] Building seed filter... [0.068325s] Searching alignments... [29.7761s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.53581s] Building query seed array... [1.59305s] Computing hash join... [4.00424s] Building seed filter... [0.065434s] Searching alignments... [27.37s] Deallocating buffers... [0.105122s] Opening temporary output file... [0.000503s] Computing alignments... [103.563s] Deallocating reference... [0.071935s] Loading reference sequences... [415.456s] Masking reference... [57.5238s] Initializing temporary storage... [0.003921s] Building reference histograms... [12.1266s] Allocating buffers... [0.000188s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.88749s] Building query seed array... [1.80619s] Computing hash join... [4.1792s] Building seed filter... [0.066672s] Searching alignments... [76.1915s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3084s] Building query seed array... [2.13619s] Computing hash join... [4.32058s] Building seed filter... [0.066375s] Searching alignments... [47.8422s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.723s] Building query seed array... [2.15156s] Computing hash join... [4.21078s] Building seed filter... [0.078021s] Searching alignments... [47.0164s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.63382s] Building query seed array... [1.81972s] Computing hash join... [4.19815s] Building seed filter... [0.065649s] Searching alignments... [44.7087s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.72413s] Building query seed array... [1.58294s] Computing hash join... [4.03572s] Building seed filter... [0.067743s] Searching alignments... [36.7584s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2118s] Building query seed array... [1.91868s] Computing hash join... [4.09859s] Building seed filter... [0.063266s] Searching alignments... [29.0518s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4855s] Building query seed array... [1.92949s] Computing hash join... [4.09418s] Building seed filter... [0.076095s] Searching alignments... [35.4051s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.60078s] Building query seed array... [1.5364s] Computing hash join... [4.08011s] Building seed filter... [0.062743s] Searching alignments... [30.1644s] Deallocating buffers... [0.120848s] Opening temporary output file... [0.000947s] Computing alignments... [132.316s] Deallocating reference... [0.081754s] Loading reference sequences... [385.876s] Masking reference... [58.1322s] Initializing temporary storage... [0.004365s] Building reference histograms... [12.6927s] Allocating buffers... [0.000193s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.29793s] Building query seed array... [1.83183s] Computing hash join... [4.15372s] Building seed filter... [0.079459s] Searching alignments... [58.3235s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3045s] Building query seed array... [2.40654s] Computing hash join... [4.21658s] Building seed filter... [0.072382s] Searching alignments... [39.2996s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5821s] Building query seed array... [2.16075s] Computing hash join... [4.2039s] Building seed filter... [0.064699s] Searching alignments... [37.3144s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.78053s] Building query seed array... [1.71829s] Computing hash join... [4.15572s] Building seed filter... [0.065286s] Searching alignments... [35.4988s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.66754s] Building query seed array... [1.61767s] Computing hash join... [4.05066s] Building seed filter... [0.062632s] Searching alignments... [31.1496s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.4748s] Building query seed array... [1.92848s] Computing hash join... [4.12521s] Building seed filter... [0.065011s] Searching alignments... [24.3291s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3872s] Building query seed array... [1.92633s] Computing hash join... [4.08086s] Building seed filter... [0.067612s] Searching alignments... [28.008s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.77115s] Building query seed array... [1.63416s] Computing hash join... [4.04467s] Building seed filter... [0.062711s] Searching alignments... [24.1925s] Deallocating buffers... [0.1059s] Opening temporary output file... [0.000951s] Computing alignments... [101.364s] Deallocating reference... [0.083493s] Loading reference sequences... [376.993s] Masking reference... [58.0018s] Initializing temporary storage... [0.00399s] Building reference histograms... [11.6908s] Allocating buffers... [0.000186s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.85451s] Building query seed array... [1.72949s] Computing hash join... [4.26153s] Building seed filter... [0.070963s] Searching alignments... [64.0232s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.248s] Building query seed array... [2.01378s] Computing hash join... [4.23511s] Building seed filter... [0.063363s] Searching alignments... [42.3311s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.8313s] Building query seed array... [2.20594s] Computing hash join... [4.19649s] Building seed filter... [0.070232s] Searching alignments... [42.525s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.03302s] Building query seed array... [1.82918s] Computing hash join... [4.14748s] Building seed filter... [0.06729s] Searching alignments... [40.7715s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.78374s] Building query seed array... [1.5776s] Computing hash join... [4.05109s] Building seed filter... [0.058763s] Searching alignments... [30.1227s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1186s] Building query seed array... [1.84445s] Computing hash join... [4.06716s] Building seed filter... [0.067208s] Searching alignments... [29.6854s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.343s] Building query seed array... [1.84653s] Computing hash join... [4.03686s] Building seed filter... [0.062535s] Searching alignments... [33.9001s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.54771s] Building query seed array... [1.56632s] Computing hash join... [4.03821s] Building seed filter... [0.070782s] Searching alignments... [24.8562s] Deallocating buffers... [0.113371s] Opening temporary output file... [0.001418s] Computing alignments... [103.999s] Deallocating reference... [0.062743s] Loading reference sequences... [17.4061s] Masking reference... [21.847s] Initializing temporary storage... [0.003345s] Building reference histograms... [4.68051s] Allocating buffers... [0.000195s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.36294s] Building query seed array... [1.73758s] Computing hash join... [1.85286s] Building seed filter... [0.039595s] Searching alignments... [24.8612s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.2921s] Building query seed array... [2.04712s] Computing hash join... [1.89326s] Building seed filter... [0.040622s] Searching alignments... [18.6203s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.312s] Building query seed array... [2.10902s] Computing hash join... [1.87334s] Building seed filter... [0.042433s] Searching alignments... [18.0297s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.3022s] Building query seed array... [1.79979s] Computing hash join... [1.89792s] Building seed filter... [0.044566s] Searching alignments... [15.5466s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.31378s] Building query seed array... [1.5435s] Computing hash join... [1.78798s] Building seed filter... [0.039909s] Searching alignments... [13.05s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.22541s] Building query seed array... [1.8204s] Computing hash join... [1.82029s] Building seed filter... [0.038464s] Searching alignments... [10.487s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.29167s] Building query seed array... [1.84797s] Computing hash join... [1.76084s] Building seed filter... [0.040013s] Searching alignments... [13.2226s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.29328s] Building query seed array... [1.57027s] Computing hash join... [1.77981s] Building seed filter... [0.038794s] Searching alignments... [11.1257s] Deallocating buffers... [0.042633s] Opening temporary output file... [0.030386s] Computing alignments... [66.9843s] Deallocating reference... [0.029182s] Loading reference sequences... [0.000428s] Deallocating buffers... [0.012038s] Joining output blocks... [92.543s] Deallocating queries... [0.040829s] Loading query sequences... [2.9e-05s] Closing the input file... [4.7e-05s] Closing the output file... [0.367013s] Closing the database file... [3.6e-05s] Deallocating taxonomy... [1e-05s] Total time = 5376.76s Reported 492378909 pairwise alignments, 492446069 HSPs. 2636884 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.254141s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.095823s] Opening the output file... [0.000863s] Loading query sequences... [82.7109s] Masking queries... [57.5989s] Building query seed set... [0.328343s] Algorithm: Double-indexed Building query histograms... [2.60786s] Allocating buffers... [0.000697s] Loading reference sequences... [48.1668s] Masking reference... [59.1623s] Initializing temporary storage... [0.004459s] Building reference histograms... [12.6029s] Allocating buffers... [0.000216s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.98361s] Building query seed array... [1.77937s] Computing hash join... [4.11921s] Building seed filter... [0.068233s] Searching alignments... [146.269s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2647s] Building query seed array... [1.98282s] Computing hash join... [4.13276s] Building seed filter... [0.061557s] Searching alignments... [169.96s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4415s] Building query seed array... [1.99443s] Computing hash join... [4.07079s] Building seed filter... [0.067935s] Searching alignments... [102.901s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.64989s] Building query seed array... [1.70151s] Computing hash join... [4.03027s] Building seed filter... [0.068193s] Searching alignments... [127.955s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.6242s] Building query seed array... [1.52086s] Computing hash join... [3.94762s] Building seed filter... [0.065358s] Searching alignments... [81.9603s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1484s] Building query seed array... [1.81647s] Computing hash join... [3.90539s] Building seed filter... [0.058067s] Searching alignments... [67.0163s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3505s] Building query seed array... [1.90316s] Computing hash join... [4.03397s] Building seed filter... [0.05786s] Searching alignments... [105.853s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.60746s] Building query seed array... [1.60702s] Computing hash join... [3.96916s] Building seed filter... [0.060471s] Searching alignments... [71.3193s] Deallocating buffers... [0.114972s] Opening temporary output file... [0.001048s] Computing alignments... [408.781s] Deallocating reference... [0.089133s] Loading reference sequences... [43.9897s] Masking reference... [58.8427s] Initializing temporary storage... [0.006042s] Building reference histograms... [12.4774s] Allocating buffers... [0.000212s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.98043s] Building query seed array... [1.76569s] Computing hash join... [4.08433s] Building seed filter... [0.067001s] Searching alignments... [119.246s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3788s] Building query seed array... [2.05443s] Computing hash join... [4.1257s] Building seed filter... [0.064104s] Searching alignments... [117.643s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5355s] Building query seed array... [2.07086s] Computing hash join... [4.14157s] Building seed filter... [0.070689s] Searching alignments... [87.9095s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.66791s] Building query seed array... [1.70469s] Computing hash join... [4.113s] Building seed filter... [0.066086s] Searching alignments... [78.6103s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.63768s] Building query seed array... [1.55063s] Computing hash join... [3.97156s] Building seed filter... [0.059543s] Searching alignments... [72.2704s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1973s] Building query seed array... [1.78713s] Computing hash join... [3.97595s] Building seed filter... [0.056682s] Searching alignments... [52.3261s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.361s] Building query seed array... [1.9219s] Computing hash join... [3.93005s] Building seed filter... [0.060708s] Searching alignments... [75.9795s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.67021s] Building query seed array... [1.5023s] Computing hash join... [3.91705s] Building seed filter... [0.062328s] Searching alignments... [55.0678s] Deallocating buffers... [0.124123s] Opening temporary output file... [0.001035s] Computing alignments... [317.819s] Deallocating reference... [0.071871s] Loading reference sequences... [465.366s] Masking reference... [57.6138s] Initializing temporary storage... [0.004063s] Building reference histograms... [13.1096s] Allocating buffers... [0.000187s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.91001s] Building query seed array... [1.72892s] Computing hash join... [4.08362s] Building seed filter... [0.06446s] Searching alignments... [150.444s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.5859s] Building query seed array... [2.08891s] Computing hash join... [4.05199s] Building seed filter... [0.060368s] Searching alignments... [136.236s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5296s] Building query seed array... [2.10815s] Computing hash join... [4.08795s] Building seed filter... [0.065037s] Searching alignments... [105.426s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.66095s] Building query seed array... [1.68761s] Computing hash join... [4.04689s] Building seed filter... [0.063249s] Searching alignments... [97.0716s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.61627s] Building query seed array... [1.91288s] Computing hash join... [3.98752s] Building seed filter... [0.060815s] Searching alignments... [75.3989s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1987s] Building query seed array... [2.02796s] Computing hash join... [3.93245s] Building seed filter... [0.065293s] Searching alignments... [62.7616s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4353s] Building query seed array... [1.89567s] Computing hash join... [3.99604s] Building seed filter... [0.056552s] Searching alignments... [94.1373s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.71091s] Building query seed array... [1.62663s] Computing hash join... [3.93417s] Building seed filter... [0.059201s] Searching alignments... [79.3098s] Deallocating buffers... [0.126292s] Opening temporary output file... [0.001141s] Computing alignments... [393.583s] Deallocating reference... [0.089455s] Loading reference sequences... [70.3863s] Masking reference... [59.1497s] Initializing temporary storage... [0.005126s] Building reference histograms... [12.5046s] Allocating buffers... [0.000165s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.17944s] Building query seed array... [1.77488s] Computing hash join... [4.09653s] Building seed filter... [0.064371s] Searching alignments... [156.888s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2953s] Building query seed array... [2.03842s] Computing hash join... [4.10618s] Building seed filter... [0.065772s] Searching alignments... [123.623s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5496s] Building query seed array... [2.09131s] Computing hash join... [4.25824s] Building seed filter... [0.066641s] Searching alignments... [82.3362s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.73006s] Building query seed array... [1.66552s] Computing hash join... [4.16262s] Building seed filter... [0.062406s] Searching alignments... [91.873s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.71681s] Building query seed array... [1.52556s] Computing hash join... [3.9417s] Building seed filter... [0.05948s] Searching alignments... [86.0045s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1929s] Building query seed array... [1.89958s] Computing hash join... [3.98565s] Building seed filter... [0.059964s] Searching alignments... [65.9605s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4035s] Building query seed array... [1.88613s] Computing hash join... [4.05713s] Building seed filter... [0.062262s] Searching alignments... [67.6142s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.5709s] Building query seed array... [1.54093s] Computing hash join... [3.95383s] Building seed filter... [0.056877s] Searching alignments... [49.8357s] Deallocating buffers... [0.122943s] Opening temporary output file... [0.001114s] Computing alignments... [312.738s] Deallocating reference... [0.082192s] Loading reference sequences... [40.5594s] Masking reference... [59.2529s] Initializing temporary storage... [0.00468s] Building reference histograms... [12.7986s] Allocating buffers... [0.000186s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.14091s] Building query seed array... [1.7674s] Computing hash join... [4.12405s] Building seed filter... [0.067333s] Searching alignments... [108.198s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.3213s] Building query seed array... [1.96731s] Computing hash join... [4.06065s] Building seed filter... [0.06132s] Searching alignments... [88.478s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4862s] Building query seed array... [1.99299s] Computing hash join... [4.09235s] Building seed filter... [0.068383s] Searching alignments... [81.3377s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.09421s] Building query seed array... [1.81496s] Computing hash join... [4.13659s] Building seed filter... [0.075115s] Searching alignments... [73.9763s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.637s] Building query seed array... [1.51273s] Computing hash join... [3.97436s] Building seed filter... [0.062214s] Searching alignments... [64.1554s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.103s] Building query seed array... [1.80241s] Computing hash join... [3.98026s] Building seed filter... [0.059863s] Searching alignments... [55.0881s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.2875s] Building query seed array... [1.85284s] Computing hash join... [4.03721s] Building seed filter... [0.065113s] Searching alignments... [69.2821s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.92577s] Building query seed array... [1.58254s] Computing hash join... [4.05965s] Building seed filter... [0.062221s] Searching alignments... [53.5058s] Deallocating buffers... [0.128249s] Opening temporary output file... [0.001534s] Computing alignments... [294.354s] Deallocating reference... [0.064361s] Loading reference sequences... [17.0422s] Masking reference... [21.3262s] Initializing temporary storage... [0.004638s] Building reference histograms... [4.65808s] Allocating buffers... [0.000184s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.31839s] Building query seed array... [1.68875s] Computing hash join... [1.84581s] Building seed filter... [0.04018s] Searching alignments... [47.1824s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.28886s] Building query seed array... [2.02135s] Computing hash join... [1.8748s] Building seed filter... [0.03861s] Searching alignments... [70.627s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30784s] Building query seed array... [2.06047s] Computing hash join... [1.85946s] Building seed filter... [0.035355s] Searching alignments... [33.4605s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.2555s] Building query seed array... [1.64483s] Computing hash join... [1.88997s] Building seed filter... [0.037499s] Searching alignments... [37.7516s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25194s] Building query seed array... [1.5341s] Computing hash join... [1.80847s] Building seed filter... [0.044402s] Searching alignments... [28.9939s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.17045s] Building query seed array... [1.81016s] Computing hash join... [1.76801s] Building seed filter... [0.035348s] Searching alignments... [22.6695s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.25926s] Building query seed array... [1.86063s] Computing hash join... [1.81385s] Building seed filter... [0.036056s] Searching alignments... [39.6612s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.21949s] Building query seed array... [1.56494s] Computing hash join... [1.75627s] Building seed filter... [0.042198s] Searching alignments... [24.2097s] Deallocating buffers... [0.050624s] Opening temporary output file... [0.002915s] Computing alignments... [137.521s] Deallocating reference... [0.039252s] Loading reference sequences... [0.00385s] Deallocating buffers... [0.013153s] Joining output blocks... [261.679s] Deallocating queries... [0.046194s] Loading query sequences... [3.6e-05s] Closing the input file... [5.6e-05s] Closing the output file... [0.34701s] Closing the database file... [3.9e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 7995.55s Reported 1266120152 pairwise alignments, 1266154793 HSPs. 3892337 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.100645s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.132446s] Opening the output file... [0.00032s] Loading query sequences... [82.7415s] Masking queries... [56.6447s] Building query seed set... [0.3483s] Algorithm: Double-indexed Building query histograms... [2.59608s] Allocating buffers... [0.000723s] Loading reference sequences... [57.2354s] Masking reference... [59.054s] Initializing temporary storage... [0.005s] Building reference histograms... [12.4343s] Allocating buffers... [0.000206s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.96s] Building query seed array... [1.71156s] Computing hash join... [4.18562s] Building seed filter... [0.070648s] Searching alignments... [142.486s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3009s] Building query seed array... [2.02291s] Computing hash join... [4.15813s] Building seed filter... [0.067812s] Searching alignments... [118.796s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5258s] Building query seed array... [1.98846s] Computing hash join... [4.19261s] Building seed filter... [0.069305s] Searching alignments... [96.2973s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.64085s] Building query seed array... [1.64895s] Computing hash join... [4.27155s] Building seed filter... [0.070921s] Searching alignments... [86.3247s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.64414s] Building query seed array... [1.54485s] Computing hash join... [3.98652s] Building seed filter... [0.067949s] Searching alignments... [95.8167s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1994s] Building query seed array... [1.77654s] Computing hash join... [4.05408s] Building seed filter... [0.068484s] Searching alignments... [66.0474s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3372s] Building query seed array... [1.82516s] Computing hash join... [3.99616s] Building seed filter... [0.065179s] Searching alignments... [77.2301s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.62243s] Building query seed array... [1.54575s] Computing hash join... [3.95978s] Building seed filter... [0.069527s] Searching alignments... [69.5246s] Deallocating buffers... [0.139914s] Opening temporary output file... [0.001168s] Computing alignments... [371.42s] Deallocating reference... [0.095099s] Loading reference sequences... [472.524s] Masking reference... [58.4071s] Initializing temporary storage... [0.004142s] Building reference histograms... [13.4561s] Allocating buffers... [0.00022s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.95s] Building query seed array... [1.69487s] Computing hash join... [4.15527s] Building seed filter... [0.075564s] Searching alignments... [115.957s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.4069s] Building query seed array... [2.1064s] Computing hash join... [4.14576s] Building seed filter... [0.074572s] Searching alignments... [91.8106s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4792s] Building query seed array... [2.06088s] Computing hash join... [4.15313s] Building seed filter... [0.069632s] Searching alignments... [83.8558s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.62978s] Building query seed array... [1.71276s] Computing hash join... [4.17401s] Building seed filter... [0.067718s] Searching alignments... [71.6968s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.62651s] Building query seed array... [1.54697s] Computing hash join... [4.07474s] Building seed filter... [0.067979s] Searching alignments... [71.6075s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2979s] Building query seed array... [1.85835s] Computing hash join... [4.09462s] Building seed filter... [0.063053s] Searching alignments... [50.4725s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.5229s] Building query seed array... [1.90588s] Computing hash join... [4.00043s] Building seed filter... [0.06418s] Searching alignments... [59.7343s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.53856s] Building query seed array... [1.54049s] Computing hash join... [3.99881s] Building seed filter... [0.065095s] Searching alignments... [54.0091s] Deallocating buffers... [0.111483s] Opening temporary output file... [0.001136s] Computing alignments... [287.993s] Deallocating reference... [0.071005s] Loading reference sequences... [434.994s] Masking reference... [57.5233s] Initializing temporary storage... [0.003947s] Building reference histograms... [11.8649s] Allocating buffers... [0.00018s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.90921s] Building query seed array... [1.70373s] Computing hash join... [4.12892s] Building seed filter... [0.072427s] Searching alignments... [140.801s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.5361s] Building query seed array... [2.08446s] Computing hash join... [4.13977s] Building seed filter... [0.077467s] Searching alignments... [122.632s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.6846s] Building query seed array... [2.75631s] Computing hash join... [4.4826s] Building seed filter... [0.074388s] Searching alignments... [96.2772s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.62013s] Building query seed array... [1.79313s] Computing hash join... [4.1687s] Building seed filter... [0.072409s] Searching alignments... [85.5407s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.74003s] Building query seed array... [1.50563s] Computing hash join... [3.98757s] Building seed filter... [0.065846s] Searching alignments... [75.603s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1645s] Building query seed array... [1.86819s] Computing hash join... [4.01619s] Building seed filter... [0.065713s] Searching alignments... [61.3596s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4329s] Building query seed array... [1.88113s] Computing hash join... [4.05019s] Building seed filter... [0.073812s] Searching alignments... [71.4435s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.84228s] Building query seed array... [1.65178s] Computing hash join... [4.03303s] Building seed filter... [0.067703s] Searching alignments... [61.9431s] Deallocating buffers... [0.112117s] Opening temporary output file... [0.001005s] Computing alignments... [365.287s] Deallocating reference... [0.079s] Loading reference sequences... [50.1811s] Masking reference... [58.5221s] Initializing temporary storage... [0.005144s] Building reference histograms... [13.3795s] Allocating buffers... [0.000204s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.10623s] Building query seed array... [1.96199s] Computing hash join... [4.16506s] Building seed filter... [0.070583s] Searching alignments... [158.147s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.36s] Building query seed array... [2.03937s] Computing hash join... [4.19133s] Building seed filter... [0.071443s] Searching alignments... [100.653s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5602s] Building query seed array... [2.07578s] Computing hash join... [4.15649s] Building seed filter... [0.066715s] Searching alignments... [77.0757s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.65053s] Building query seed array... [1.66281s] Computing hash join... [4.17133s] Building seed filter... [0.071614s] Searching alignments... [84.4886s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.65544s] Building query seed array... [1.57166s] Computing hash join... [4.02779s] Building seed filter... [0.067772s] Searching alignments... [85.9013s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1887s] Building query seed array... [1.88062s] Computing hash join... [4.07117s] Building seed filter... [0.068126s] Searching alignments... [59.219s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3866s] Building query seed array... [1.88972s] Computing hash join... [4.12789s] Building seed filter... [0.066838s] Searching alignments... [65.465s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.59965s] Building query seed array... [1.54863s] Computing hash join... [3.97199s] Building seed filter... [0.068362s] Searching alignments... [49.2299s] Deallocating buffers... [0.1068s] Opening temporary output file... [0.001087s] Computing alignments... [299.906s] Deallocating reference... [0.07834s] Loading reference sequences... [40.8664s] Masking reference... [59.2367s] Initializing temporary storage... [0.004514s] Building reference histograms... [12.433s] Allocating buffers... [0.000188s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.94203s] Building query seed array... [2.05276s] Computing hash join... [4.19041s] Building seed filter... [0.069625s] Searching alignments... [106.507s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.7483s] Building query seed array... [2.05561s] Computing hash join... [4.28048s] Building seed filter... [0.069449s] Searching alignments... [86.6138s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.673s] Building query seed array... [2.06862s] Computing hash join... [4.18621s] Building seed filter... [0.076679s] Searching alignments... [77.8707s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.68713s] Building query seed array... [1.65619s] Computing hash join... [4.1616s] Building seed filter... [0.075436s] Searching alignments... [69.0609s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.7416s] Building query seed array... [1.60114s] Computing hash join... [4.01919s] Building seed filter... [0.071477s] Searching alignments... [60.5385s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.0831s] Building query seed array... [1.78533s] Computing hash join... [4.01387s] Building seed filter... [0.071792s] Searching alignments... [54.6257s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.383s] Building query seed array... [1.85472s] Computing hash join... [4.05833s] Building seed filter... [0.072051s] Searching alignments... [58.0015s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.54333s] Building query seed array... [1.52522s] Computing hash join... [3.9994s] Building seed filter... [0.074454s] Searching alignments... [52.1023s] Deallocating buffers... [0.120582s] Opening temporary output file... [0.001508s] Computing alignments... [270.632s] Deallocating reference... [0.080596s] Loading reference sequences... [16.0694s] Masking reference... [21.1391s] Initializing temporary storage... [0.00464s] Building reference histograms... [4.99482s] Allocating buffers... [0.000213s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.34539s] Building query seed array... [1.68584s] Computing hash join... [1.87538s] Building seed filter... [0.042693s] Searching alignments... [43.8209s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22613s] Building query seed array... [1.98451s] Computing hash join... [1.88176s] Building seed filter... [0.041746s] Searching alignments... [48.0698s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.29604s] Building query seed array... [1.99011s] Computing hash join... [1.8822s] Building seed filter... [0.045248s] Searching alignments... [31.9661s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25336s] Building query seed array... [1.66283s] Computing hash join... [1.90646s] Building seed filter... [0.050265s] Searching alignments... [31.7455s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.331s] Building query seed array... [1.57789s] Computing hash join... [1.79921s] Building seed filter... [0.039256s] Searching alignments... [27.7571s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.28493s] Building query seed array... [1.7768s] Computing hash join... [1.82668s] Building seed filter... [0.041656s] Searching alignments... [22.2476s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.2569s] Building query seed array... [1.8534s] Computing hash join... [1.79271s] Building seed filter... [0.038657s] Searching alignments... [25.0789s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.3882s] Building query seed array... [1.4976s] Computing hash join... [1.7926s] Building seed filter... [0.041685s] Searching alignments... [22.896s] Deallocating buffers... [0.049914s] Opening temporary output file... [0.001862s] Computing alignments... [127.665s] Deallocating reference... [0.039072s] Loading reference sequences... [0.036896s] Deallocating buffers... [0.015993s] Joining output blocks... [237.989s] Deallocating queries... [0.051163s] Loading query sequences... [3.9e-05s] Closing the input file... [5.9e-05s] Closing the output file... [0.346886s] Closing the database file... [3.3e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 7828.86s Reported 988108712 pairwise alignments, 988134487 HSPs. 3731322 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.072054s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.052302s] Opening the output file... [0.000329s] Loading query sequences... [88.9458s] Masking queries... [52.997s] Building query seed set... [0.355173s] Algorithm: Double-indexed Building query histograms... [3.14633s] Allocating buffers... [0.000679s] Loading reference sequences... [56.6755s] Masking reference... [59.0047s] Initializing temporary storage... [0.005036s] Building reference histograms... [12.7869s] Allocating buffers... [0.000193s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.03556s] Building query seed array... [2.14118s] Computing hash join... [4.46664s] Building seed filter... [0.081193s] Searching alignments... [175.336s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3044s] Building query seed array... [2.55294s] Computing hash join... [4.50989s] Building seed filter... [0.079198s] Searching alignments... [120.831s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.502s] Building query seed array... [2.5866s] Computing hash join... [4.40331s] Building seed filter... [0.085764s] Searching alignments... [169.995s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.70096s] Building query seed array... [2.04491s] Computing hash join... [4.42738s] Building seed filter... [0.077124s] Searching alignments... [105.125s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.77162s] Building query seed array... [1.88518s] Computing hash join... [4.21769s] Building seed filter... [0.080579s] Searching alignments... [93.5749s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1404s] Building query seed array... [2.26995s] Computing hash join... [4.30639s] Building seed filter... [0.08174s] Searching alignments... [79.5726s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4213s] Building query seed array... [2.27509s] Computing hash join... [4.31818s] Building seed filter... [0.075656s] Searching alignments... [85.7973s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.52199s] Building query seed array... [1.89935s] Computing hash join... [4.22053s] Building seed filter... [0.08049s] Searching alignments... [74.2004s] Deallocating buffers... [0.124104s] Opening temporary output file... [0.001123s] Computing alignments... [383.809s] Deallocating reference... [0.096084s] Loading reference sequences... [546.609s] Masking reference... [57.9409s] Initializing temporary storage... [0.004125s] Building reference histograms... [12.7086s] Allocating buffers... [0.000187s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.97586s] Building query seed array... [2.17216s] Computing hash join... [4.35794s] Building seed filter... [0.081717s] Searching alignments... [126.408s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2999s] Building query seed array... [2.4526s] Computing hash join... [4.4665s] Building seed filter... [0.079771s] Searching alignments... [91.5568s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5268s] Building query seed array... [2.6109s] Computing hash join... [4.398s] Building seed filter... [0.082411s] Searching alignments... [107.307s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.65851s] Building query seed array... [2.09532s] Computing hash join... [4.37959s] Building seed filter... [0.087134s] Searching alignments... [79.0939s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.6144s] Building query seed array... [1.95087s] Computing hash join... [4.24088s] Building seed filter... [0.078543s] Searching alignments... [102.103s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.384s] Building query seed array... [2.57806s] Computing hash join... [4.2646s] Building seed filter... [0.075789s] Searching alignments... [56.2317s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3855s] Building query seed array... [2.45565s] Computing hash join... [4.23237s] Building seed filter... [0.072956s] Searching alignments... [64.5423s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.98194s] Building query seed array... [1.99868s] Computing hash join... [4.22385s] Building seed filter... [0.082533s] Searching alignments... [55.223s] Deallocating buffers... [0.122974s] Opening temporary output file... [0.000673s] Computing alignments... [304.126s] Deallocating reference... [0.072096s] Loading reference sequences... [458.652s] Masking reference... [58.5644s] Initializing temporary storage... [0.005037s] Building reference histograms... [13.0722s] Allocating buffers... [0.00019s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.97812s] Building query seed array... [2.15142s] Computing hash join... [4.51729s] Building seed filter... [0.090294s] Searching alignments... [148.083s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2983s] Building query seed array... [2.53485s] Computing hash join... [4.38389s] Building seed filter... [0.076261s] Searching alignments... [109.273s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5795s] Building query seed array... [2.58448s] Computing hash join... [4.37285s] Building seed filter... [0.083339s] Searching alignments... [129.132s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.89323s] Building query seed array... [2.15063s] Computing hash join... [4.35722s] Building seed filter... [0.083408s] Searching alignments... [89.4326s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.6462s] Building query seed array... [2.18363s] Computing hash join... [4.23545s] Building seed filter... [0.073446s] Searching alignments... [107.262s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1615s] Building query seed array... [2.33697s] Computing hash join... [4.31719s] Building seed filter... [0.077848s] Searching alignments... [65.6629s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3792s] Building query seed array... [2.48993s] Computing hash join... [4.3045s] Building seed filter... [0.075508s] Searching alignments... [75.7938s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.60716s] Building query seed array... [2.02221s] Computing hash join... [4.18354s] Building seed filter... [0.07869s] Searching alignments... [64.3447s] Deallocating buffers... [0.120703s] Opening temporary output file... [0.001043s] Computing alignments... [349.008s] Deallocating reference... [0.071334s] Loading reference sequences... [40.7704s] Masking reference... [59.208s] Initializing temporary storage... [0.003874s] Building reference histograms... [13.0753s] Allocating buffers... [0.000189s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.05969s] Building query seed array... [2.08166s] Computing hash join... [4.39667s] Building seed filter... [0.08398s] Searching alignments... [122.634s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3008s] Building query seed array... [2.55805s] Computing hash join... [4.40017s] Building seed filter... [0.080307s] Searching alignments... [101.49s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.6108s] Building query seed array... [2.57436s] Computing hash join... [4.38534s] Building seed filter... [0.080622s] Searching alignments... [97.3199s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.62299s] Building query seed array... [2.1034s] Computing hash join... [4.38925s] Building seed filter... [0.082749s] Searching alignments... [91.8583s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.73247s] Building query seed array... [1.87322s] Computing hash join... [4.23938s] Building seed filter... [0.085723s] Searching alignments... [92.4062s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2431s] Building query seed array... [2.23663s] Computing hash join... [4.31593s] Building seed filter... [0.087009s] Searching alignments... [68.7264s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3864s] Building query seed array... [2.43715s] Computing hash join... [4.21198s] Building seed filter... [0.079287s] Searching alignments... [69.8435s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.59792s] Building query seed array... [1.91547s] Computing hash join... [4.25609s] Building seed filter... [0.084548s] Searching alignments... [45.1773s] Deallocating buffers... [0.106793s] Opening temporary output file... [0.045752s] Computing alignments... [273.545s] Deallocating reference... [0.070469s] Loading reference sequences... [39.5863s] Masking reference... [58.036s] Initializing temporary storage... [0.004207s] Building reference histograms... [12.7382s] Allocating buffers... [0.000187s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.33761s] Building query seed array... [2.16212s] Computing hash join... [4.35811s] Building seed filter... [0.088225s] Searching alignments... [107.281s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2006s] Building query seed array... [2.50428s] Computing hash join... [4.3968s] Building seed filter... [0.082834s] Searching alignments... [81.5177s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.3835s] Building query seed array... [2.55366s] Computing hash join... [4.39611s] Building seed filter... [0.089435s] Searching alignments... [93.5049s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.14307s] Building query seed array... [2.18948s] Computing hash join... [4.42549s] Building seed filter... [0.084615s] Searching alignments... [64.4726s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.67297s] Building query seed array... [1.89416s] Computing hash join... [4.29239s] Building seed filter... [0.082804s] Searching alignments... [84.9435s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.5592s] Building query seed array... [2.37343s] Computing hash join... [4.32516s] Building seed filter... [0.07653s] Searching alignments... [67.059s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.4683s] Building query seed array... [2.27685s] Computing hash join... [4.27073s] Building seed filter... [0.079078s] Searching alignments... [55.8389s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.53345s] Building query seed array... [2.26037s] Computing hash join... [4.2005s] Building seed filter... [0.090816s] Searching alignments... [49.139s] Deallocating buffers... [0.117398s] Opening temporary output file... [0.001596s] Computing alignments... [247.835s] Deallocating reference... [0.065147s] Loading reference sequences... [20.4177s] Masking reference... [21.9526s] Initializing temporary storage... [0.003653s] Building reference histograms... [4.76666s] Allocating buffers... [0.000195s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.24644s] Building query seed array... [2.07763s] Computing hash join... [2.0572s] Building seed filter... [0.048381s] Searching alignments... [54.034s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.2498s] Building query seed array... [2.51051s] Computing hash join... [2.0565s] Building seed filter... [0.043888s] Searching alignments... [40.9693s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.28614s] Building query seed array... [2.58626s] Computing hash join... [2.0918s] Building seed filter... [0.044401s] Searching alignments... [42.4764s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.37488s] Building query seed array... [2.14353s] Computing hash join... [2.09388s] Building seed filter... [0.050038s] Searching alignments... [33.1757s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.27641s] Building query seed array... [1.8879s] Computing hash join... [1.97578s] Building seed filter... [0.045116s] Searching alignments... [32.1642s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.22124s] Building query seed array... [2.25944s] Computing hash join... [1.9563s] Building seed filter... [0.045491s] Searching alignments... [23.9527s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.25771s] Building query seed array... [2.32656s] Computing hash join... [1.93336s] Building seed filter... [0.045268s] Searching alignments... [27.8716s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22093s] Building query seed array... [1.881s] Computing hash join... [1.95851s] Building seed filter... [0.048626s] Searching alignments... [23.5672s] Deallocating buffers... [0.04295s] Opening temporary output file... [0.01112s] Computing alignments... [122.507s] Deallocating reference... [0.028983s] Loading reference sequences... [0.049013s] Deallocating buffers... [0.019544s] Joining output blocks... [233.057s] Deallocating queries... [0.046309s] Loading query sequences... [3.3e-05s] Closing the input file... [5.4e-05s] Closing the output file... [0.565964s] Closing the database file... [8.1e-05s] Deallocating taxonomy... [2.3e-05s] Total time = 8290.66s Reported 1532918512 pairwise alignments, 1533036090 HSPs. 3301186 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.083222s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.129716s] Opening the output file... [0.000797s] Loading query sequences... [90.5145s] Masking queries... [54.8879s] Building query seed set... [0.324671s] Algorithm: Double-indexed Building query histograms... [3.40685s] Allocating buffers... [0.000694s] Loading reference sequences... [59.8173s] Masking reference... [59.0096s] Initializing temporary storage... [0.00551s] Building reference histograms... [12.8644s] Allocating buffers... [0.000194s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.95279s] Building query seed array... [2.17216s] Computing hash join... [4.42505s] Building seed filter... [0.086479s] Searching alignments... [168.374s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.4047s] Building query seed array... [2.48045s] Computing hash join... [4.43611s] Building seed filter... [0.084025s] Searching alignments... [120.323s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5277s] Building query seed array... [2.62551s] Computing hash join... [4.44095s] Building seed filter... [0.088771s] Searching alignments... [133.15s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.68668s] Building query seed array... [2.14036s] Computing hash join... [4.42435s] Building seed filter... [0.088788s] Searching alignments... [103.591s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.65855s] Building query seed array... [1.94778s] Computing hash join... [4.27367s] Building seed filter... [0.086228s] Searching alignments... [92.4725s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1683s] Building query seed array... [2.35272s] Computing hash join... [4.38249s] Building seed filter... [0.083786s] Searching alignments... [80.1657s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3686s] Building query seed array... [2.32956s] Computing hash join... [4.26447s] Building seed filter... [0.080528s] Searching alignments... [86.2546s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.53604s] Building query seed array... [1.94079s] Computing hash join... [4.2207s] Building seed filter... [0.082341s] Searching alignments... [73.757s] Deallocating buffers... [0.110422s] Opening temporary output file... [0.000475s] Computing alignments... [394.637s] Deallocating reference... [0.093265s] Loading reference sequences... [499.869s] Masking reference... [57.7003s] Initializing temporary storage... [0.004077s] Building reference histograms... [12.6275s] Allocating buffers... [0.000192s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.96264s] Building query seed array... [2.16202s] Computing hash join... [4.39306s] Building seed filter... [0.09248s] Searching alignments... [124.859s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2878s] Building query seed array... [2.54952s] Computing hash join... [4.40705s] Building seed filter... [0.0928s] Searching alignments... [89.6199s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4562s] Building query seed array... [2.54495s] Computing hash join... [4.38517s] Building seed filter... [0.088945s] Searching alignments... [105.828s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.68719s] Building query seed array... [2.10896s] Computing hash join... [4.41712s] Building seed filter... [0.093337s] Searching alignments... [79.0364s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.0252s] Building query seed array... [2.02581s] Computing hash join... [4.25473s] Building seed filter... [0.082851s] Searching alignments... [102.409s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1912s] Building query seed array... [2.28419s] Computing hash join... [4.26738s] Building seed filter... [0.080371s] Searching alignments... [56.2319s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3938s] Building query seed array... [2.37186s] Computing hash join... [4.21897s] Building seed filter... [0.081126s] Searching alignments... [65.314s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.62903s] Building query seed array... [1.92814s] Computing hash join... [4.24465s] Building seed filter... [0.077558s] Searching alignments... [55.2604s] Deallocating buffers... [0.106032s] Opening temporary output file... [0.000929s] Computing alignments... [282.66s] Deallocating reference... [0.071571s] Loading reference sequences... [521.163s] Masking reference... [58.0461s] Initializing temporary storage... [0.004616s] Building reference histograms... [13.1158s] Allocating buffers... [0.000193s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.98654s] Building query seed array... [2.08477s] Computing hash join... [4.40188s] Building seed filter... [0.090663s] Searching alignments... [147.713s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2933s] Building query seed array... [2.5308s] Computing hash join... [4.56156s] Building seed filter... [0.084195s] Searching alignments... [106.85s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5722s] Building query seed array... [2.59038s] Computing hash join... [4.47074s] Building seed filter... [0.092145s] Searching alignments... [127.045s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.69172s] Building query seed array... [2.13245s] Computing hash join... [4.45748s] Building seed filter... [0.084683s] Searching alignments... [88.3173s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.63237s] Building query seed array... [1.88147s] Computing hash join... [4.37708s] Building seed filter... [0.082547s] Searching alignments... [104.377s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2846s] Building query seed array... [2.32869s] Computing hash join... [4.44232s] Building seed filter... [0.078066s] Searching alignments... [64.837s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.529s] Building query seed array... [2.3676s] Computing hash join... [4.2831s] Building seed filter... [0.078853s] Searching alignments... [75.4076s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.88327s] Building query seed array... [2.00474s] Computing hash join... [4.34255s] Building seed filter... [0.086602s] Searching alignments... [63.9829s] Deallocating buffers... [0.120764s] Opening temporary output file... [0.016225s] Computing alignments... [354.459s] Deallocating reference... [0.083504s] Loading reference sequences... [486.581s] Masking reference... [57.92s] Initializing temporary storage... [0.004494s] Building reference histograms... [12.5901s] Allocating buffers... [0.000187s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.17196s] Building query seed array... [2.17431s] Computing hash join... [4.41466s] Building seed filter... [0.087971s] Searching alignments... [118.235s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.7323s] Building query seed array... [2.88353s] Computing hash join... [4.42365s] Building seed filter... [0.085187s] Searching alignments... [112.589s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4748s] Building query seed array... [2.5684s] Computing hash join... [4.41212s] Building seed filter... [0.0839s] Searching alignments... [97.6249s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.00528s] Building query seed array... [2.21674s] Computing hash join... [4.43118s] Building seed filter... [0.0828s] Searching alignments... [97.1983s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.16857s] Building query seed array... [2.00792s] Computing hash join... [4.2744s] Building seed filter... [0.08332s] Searching alignments... [90.5022s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2607s] Building query seed array... [2.33587s] Computing hash join... [4.38472s] Building seed filter... [0.091795s] Searching alignments... [67.6362s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3926s] Building query seed array... [2.31065s] Computing hash join... [4.25833s] Building seed filter... [0.084582s] Searching alignments... [69.7848s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.61506s] Building query seed array... [1.92871s] Computing hash join... [4.25453s] Building seed filter... [0.084028s] Searching alignments... [44.824s] Deallocating buffers... [0.107257s] Opening temporary output file... [0.000878s] Computing alignments... [271.149s] Deallocating reference... [0.085092s] Loading reference sequences... [40.8436s] Masking reference... [58.1786s] Initializing temporary storage... [0.004063s] Building reference histograms... [12.9703s] Allocating buffers... [0.000212s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.97367s] Building query seed array... [2.10821s] Computing hash join... [4.48496s] Building seed filter... [0.088275s] Searching alignments... [107.01s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2593s] Building query seed array... [2.45605s] Computing hash join... [4.41411s] Building seed filter... [0.083632s] Searching alignments... [95.4261s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4113s] Building query seed array... [2.54371s] Computing hash join... [4.41353s] Building seed filter... [0.094633s] Searching alignments... [94.2405s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.75859s] Building query seed array... [2.15268s] Computing hash join... [4.41369s] Building seed filter... [0.090871s] Searching alignments... [65.5521s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.61406s] Building query seed array... [1.87038s] Computing hash join... [4.25627s] Building seed filter... [0.083083s] Searching alignments... [85.1593s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2354s] Building query seed array... [2.30937s] Computing hash join... [4.33048s] Building seed filter... [0.083905s] Searching alignments... [65.3278s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.802s] Building query seed array... [2.40903s] Computing hash join... [4.45222s] Building seed filter... [0.089781s] Searching alignments... [56.1786s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.56665s] Building query seed array... [2.07808s] Computing hash join... [4.2889s] Building seed filter... [0.09611s] Searching alignments... [48.2956s] Deallocating buffers... [0.121268s] Opening temporary output file... [0.000982s] Computing alignments... [241.905s] Deallocating reference... [0.078834s] Loading reference sequences... [20.4973s] Masking reference... [21.825s] Initializing temporary storage... [0.00391s] Building reference histograms... [4.66291s] Allocating buffers... [0.000185s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.24482s] Building query seed array... [2.06147s] Computing hash join... [2.05568s] Building seed filter... [0.04939s] Searching alignments... [52.7566s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22465s] Building query seed array... [2.49162s] Computing hash join... [2.16378s] Building seed filter... [0.050679s] Searching alignments... [41.3906s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.31521s] Building query seed array... [2.56883s] Computing hash join... [2.09431s] Building seed filter... [0.048193s] Searching alignments... [41.5853s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25749s] Building query seed array... [2.08721s] Computing hash join... [2.07372s] Building seed filter... [0.059608s] Searching alignments... [33.3532s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25787s] Building query seed array... [1.87339s] Computing hash join... [1.9798s] Building seed filter... [0.045777s] Searching alignments... [32.848s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.38437s] Building query seed array... [2.37152s] Computing hash join... [1.99351s] Building seed filter... [0.04512s] Searching alignments... [23.4883s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.41239s] Building query seed array... [2.30354s] Computing hash join... [1.98933s] Building seed filter... [0.046322s] Searching alignments... [27.9504s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.21669s] Building query seed array... [1.89016s] Computing hash join... [1.96179s] Building seed filter... [0.047704s] Searching alignments... [23.9346s] Deallocating buffers... [0.043054s] Opening temporary output file... [0.019767s] Computing alignments... [121.944s] Deallocating reference... [0.037814s] Loading reference sequences... [0.106182s] Deallocating buffers... [0.021438s] Joining output blocks... [245.665s] Deallocating queries... [0.049925s] Loading query sequences... [3.5e-05s] Closing the input file... [6.2e-05s] Closing the output file... [0.530365s] Closing the database file... [8.4e-05s] Deallocating taxonomy... [2.5e-05s] Total time = 8719.82s Reported 1518258543 pairwise alignments, 1518345863 HSPs. 3287600 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.100493s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.070979s] Opening the output file... [0.000348s] Loading query sequences... [113.514s] Masking queries... [64.7359s] Building query seed set... [0.376204s] Algorithm: Double-indexed Building query histograms... [4.07032s] Allocating buffers... [0.000688s] Loading reference sequences... [49.3875s] Masking reference... [58.9718s] Initializing temporary storage... [0.005175s] Building reference histograms... [13.077s] Allocating buffers... [0.000226s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.01673s] Building query seed array... [2.74486s] Computing hash join... [4.6288s] Building seed filter... [0.079768s] Searching alignments... [426.552s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3384s] Building query seed array... [3.20829s] Computing hash join... [4.61453s] Building seed filter... [0.087181s] Searching alignments... [478.045s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.7959s] Building query seed array... [3.34798s] Computing hash join... [4.64973s] Building seed filter... [0.081707s] Searching alignments... [307.8s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.67841s] Building query seed array... [2.69871s] Computing hash join... [4.6386s] Building seed filter... [0.084354s] Searching alignments... [418.73s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.64114s] Building query seed array... [2.43729s] Computing hash join... [4.41605s] Building seed filter... [0.075022s] Searching alignments... [309.345s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1971s] Building query seed array... [2.97012s] Computing hash join... [4.5262s] Building seed filter... [0.076995s] Searching alignments... [234.129s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.6851s] Building query seed array... [3.16318s] Computing hash join... [4.47439s] Building seed filter... [0.073246s] Searching alignments... [279.23s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.6036s] Building query seed array... [2.4775s] Computing hash join... [4.44735s] Building seed filter... [0.079448s] Searching alignments... [278.085s] Deallocating buffers... [0.116152s] Opening temporary output file... [0.001096s] Computing alignments... [941.055s] Deallocating reference... [0.076791s] Loading reference sequences... [471.86s] Masking reference... [57.7136s] Initializing temporary storage... [0.004057s] Building reference histograms... [12.769s] Allocating buffers... [0.000187s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.04084s] Building query seed array... [2.7041s] Computing hash join... [4.63576s] Building seed filter... [0.085877s] Searching alignments... [330.996s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2495s] Building query seed array... [3.27443s] Computing hash join... [4.68193s] Building seed filter... [0.081682s] Searching alignments... [331.696s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4607s] Building query seed array... [3.36504s] Computing hash join... [4.58198s] Building seed filter... [0.083062s] Searching alignments... [253.977s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.11566s] Building query seed array... [2.73625s] Computing hash join... [4.73953s] Building seed filter... [0.081932s] Searching alignments... [299.324s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.59781s] Building query seed array... [2.49061s] Computing hash join... [4.4223s] Building seed filter... [0.079881s] Searching alignments... [233.821s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.3756s] Building query seed array... [3.07846s] Computing hash join... [4.40288s] Building seed filter... [0.07928s] Searching alignments... [185.743s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4724s] Building query seed array... [3.10215s] Computing hash join... [4.43445s] Building seed filter... [0.082591s] Searching alignments... [214.034s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.68538s] Building query seed array... [2.52396s] Computing hash join... [4.39512s] Building seed filter... [0.078434s] Searching alignments... [208.527s] Deallocating buffers... [0.114347s] Opening temporary output file... [0.001064s] Computing alignments... [727.52s] Deallocating reference... [0.072345s] Loading reference sequences... [491.062s] Masking reference... [58.0076s] Initializing temporary storage... [0.00562s] Building reference histograms... [12.1866s] Allocating buffers... [0.000194s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.94636s] Building query seed array... [2.69915s] Computing hash join... [4.57823s] Building seed filter... [0.082569s] Searching alignments... [386.3s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.4025s] Building query seed array... [3.27502s] Computing hash join... [4.59048s] Building seed filter... [0.080377s] Searching alignments... [363.955s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5002s] Building query seed array... [3.3603s] Computing hash join... [4.62073s] Building seed filter... [0.079759s] Searching alignments... [301.636s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.6677s] Building query seed array... [2.64828s] Computing hash join... [4.73854s] Building seed filter... [0.076805s] Searching alignments... [359.678s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.70511s] Building query seed array... [2.43177s] Computing hash join... [4.53327s] Building seed filter... [0.084455s] Searching alignments... [290.234s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2391s] Building query seed array... [3.04887s] Computing hash join... [4.48929s] Building seed filter... [0.081026s] Searching alignments... [191.446s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.5576s] Building query seed array... [3.06573s] Computing hash join... [4.50789s] Building seed filter... [0.076226s] Searching alignments... [249.889s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.60621s] Building query seed array... [2.53151s] Computing hash join... [4.43904s] Building seed filter... [0.074277s] Searching alignments... [235.627s] Deallocating buffers... [0.113518s] Opening temporary output file... [0.000611s] Computing alignments... [899.795s] Deallocating reference... [0.099106s] Loading reference sequences... [433.076s] Masking reference... [57.6622s] Initializing temporary storage... [0.004624s] Building reference histograms... [12.421s] Allocating buffers... [0.000189s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.04406s] Building query seed array... [2.69511s] Computing hash join... [4.6135s] Building seed filter... [0.094865s] Searching alignments... [266.155s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2738s] Building query seed array... [3.30171s] Computing hash join... [4.64351s] Building seed filter... [0.079322s] Searching alignments... [247.125s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5873s] Building query seed array... [3.34055s] Computing hash join... [4.63211s] Building seed filter... [0.077524s] Searching alignments... [198.291s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.6862s] Building query seed array... [2.73314s] Computing hash join... [4.62064s] Building seed filter... [0.081469s] Searching alignments... [217.228s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.82834s] Building query seed array... [2.51268s] Computing hash join... [4.45795s] Building seed filter... [0.074083s] Searching alignments... [188.057s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2469s] Building query seed array... [3.00046s] Computing hash join... [4.49255s] Building seed filter... [0.073465s] Searching alignments... [146.454s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.5241s] Building query seed array... [3.07429s] Computing hash join... [4.45384s] Building seed filter... [0.074785s] Searching alignments... [156.473s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.57111s] Building query seed array... [2.51258s] Computing hash join... [4.36332s] Building seed filter... [0.076014s] Searching alignments... [147.475s] Deallocating buffers... [0.126058s] Opening temporary output file... [0.000563s] Computing alignments... [618.391s] Deallocating reference... [0.065548s] Loading reference sequences... [424.151s] Masking reference... [57.6075s] Initializing temporary storage... [0.004645s] Building reference histograms... [12.5862s] Allocating buffers... [0.000187s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.97173s] Building query seed array... [2.73425s] Computing hash join... [4.63203s] Building seed filter... [0.078634s] Searching alignments... [259.902s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2022s] Building query seed array... [3.20472s] Computing hash join... [4.6645s] Building seed filter... [0.081184s] Searching alignments... [256.941s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4448s] Building query seed array... [3.36372s] Computing hash join... [4.60735s] Building seed filter... [0.079204s] Searching alignments... [205.185s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.86308s] Building query seed array... [2.74862s] Computing hash join... [4.65311s] Building seed filter... [0.080943s] Searching alignments... [220.757s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.73134s] Building query seed array... [2.45221s] Computing hash join... [4.52712s] Building seed filter... [0.075146s] Searching alignments... [186.146s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1427s] Building query seed array... [2.93157s] Computing hash join... [4.46006s] Building seed filter... [0.074275s] Searching alignments... [138.549s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.4306s] Building query seed array... [2.97357s] Computing hash join... [4.50161s] Building seed filter... [0.074585s] Searching alignments... [154.945s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.8828s] Building query seed array... [2.50832s] Computing hash join... [4.43896s] Building seed filter... [0.075693s] Searching alignments... [169.741s] Deallocating buffers... [0.123339s] Opening temporary output file... [0.011858s] Computing alignments... [600.673s] Deallocating reference... [0.063287s] Loading reference sequences... [17.5094s] Masking reference... [21.6846s] Initializing temporary storage... [0.004034s] Building reference histograms... [4.54015s] Allocating buffers... [0.000183s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.29056s] Building query seed array... [2.73514s] Computing hash join... [2.28446s] Building seed filter... [0.054096s] Searching alignments... [131.61s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23756s] Building query seed array... [3.20697s] Computing hash join... [2.35234s] Building seed filter... [0.047787s] Searching alignments... [133.629s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.47755s] Building query seed array... [3.28075s] Computing hash join... [2.37042s] Building seed filter... [0.049909s] Searching alignments... [103.164s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26581s] Building query seed array... [2.699s] Computing hash join... [2.37334s] Building seed filter... [0.046226s] Searching alignments... [125.605s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.40747s] Building query seed array... [2.57019s] Computing hash join... [2.19973s] Building seed filter... [0.045819s] Searching alignments... [91.1304s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.3339s] Building query seed array... [2.9986s] Computing hash join... [2.21897s] Building seed filter... [0.051437s] Searching alignments... [66.1729s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.26599s] Building query seed array... [3.0019s] Computing hash join... [2.22286s] Building seed filter... [0.045615s] Searching alignments... [93.2718s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.26216s] Building query seed array... [2.44615s] Computing hash join... [2.20039s] Building seed filter... [0.048096s] Searching alignments... [89.8192s] Deallocating buffers... [0.050758s] Opening temporary output file... [0.059613s] Computing alignments... [297.896s] Deallocating reference... [0.028715s] Loading reference sequences... [0.036248s] Deallocating buffers... [0.024233s] Joining output blocks... [414.321s] Deallocating queries... [0.052153s] Loading query sequences... [2.8e-05s] Closing the input file... [4.5e-05s] Closing the output file... [0.382165s] Closing the database file... [3.2e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 18890.4s Reported 4978613444 pairwise alignments, 4978738426 HSPs. 7052311 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.090784s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.077412s] Opening the output file... [0.000329s] Loading query sequences... [113.238s] Masking queries... [66.5314s] Building query seed set... [0.383668s] Algorithm: Double-indexed Building query histograms... [4.05947s] Allocating buffers... [0.000704s] Loading reference sequences... [47.5843s] Masking reference... [59.1491s] Initializing temporary storage... [0.005214s] Building reference histograms... [12.7476s] Allocating buffers... [0.000212s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.98068s] Building query seed array... [2.76258s] Computing hash join... [4.61916s] Building seed filter... [0.087278s] Searching alignments... [428.565s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3231s] Building query seed array... [3.24942s] Computing hash join... [4.74908s] Building seed filter... [0.082293s] Searching alignments... [454.495s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5121s] Building query seed array... [3.32698s] Computing hash join... [4.6257s] Building seed filter... [0.08411s] Searching alignments... [315.464s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.69167s] Building query seed array... [2.66274s] Computing hash join... [4.59325s] Building seed filter... [0.084319s] Searching alignments... [403.803s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.66095s] Building query seed array... [2.43885s] Computing hash join... [4.36737s] Building seed filter... [0.078502s] Searching alignments... [271.322s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2723s] Building query seed array... [3.00706s] Computing hash join... [4.46293s] Building seed filter... [0.07259s] Searching alignments... [214.691s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3862s] Building query seed array... [2.9841s] Computing hash join... [4.46003s] Building seed filter... [0.075333s] Searching alignments... [279.186s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.61769s] Building query seed array... [2.50043s] Computing hash join... [4.3684s] Building seed filter... [0.08041s] Searching alignments... [270.955s] Deallocating buffers... [0.127768s] Opening temporary output file... [0.001088s] Computing alignments... [947.577s] Deallocating reference... [0.077749s] Loading reference sequences... [524.947s] Masking reference... [57.9532s] Initializing temporary storage... [0.003826s] Building reference histograms... [13.4647s] Allocating buffers... [0.000189s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.91226s] Building query seed array... [2.77604s] Computing hash join... [4.54793s] Building seed filter... [0.087281s] Searching alignments... [324.155s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2629s] Building query seed array... [3.26253s] Computing hash join... [4.56438s] Building seed filter... [0.076888s] Searching alignments... [317.418s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.9623s] Building query seed array... [3.41901s] Computing hash join... [4.58706s] Building seed filter... [0.082878s] Searching alignments... [239.607s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.76296s] Building query seed array... [2.69306s] Computing hash join... [4.63691s] Building seed filter... [0.082245s] Searching alignments... [298.062s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.64813s] Building query seed array... [2.43462s] Computing hash join... [4.47448s] Building seed filter... [0.078489s] Searching alignments... [198.033s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1567s] Building query seed array... [2.96771s] Computing hash join... [4.49092s] Building seed filter... [0.080085s] Searching alignments... [164.955s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3938s] Building query seed array... [3.05488s] Computing hash join... [4.44491s] Building seed filter... [0.079414s] Searching alignments... [211.336s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.59335s] Building query seed array... [2.42375s] Computing hash join... [4.42308s] Building seed filter... [0.082834s] Searching alignments... [211.214s] Deallocating buffers... [0.116712s] Opening temporary output file... [0.014246s] Computing alignments... [733.301s] Deallocating reference... [0.071859s] Loading reference sequences... [534.062s] Masking reference... [57.6608s] Initializing temporary storage... [0.022547s] Building reference histograms... [12.9194s] Allocating buffers... [0.00019s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.06369s] Building query seed array... [2.7611s] Computing hash join... [4.56637s] Building seed filter... [0.086428s] Searching alignments... [385.686s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.256s] Building query seed array... [3.33515s] Computing hash join... [4.58217s] Building seed filter... [0.080757s] Searching alignments... [386.44s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5167s] Building query seed array... [3.38478s] Computing hash join... [4.61691s] Building seed filter... [0.080423s] Searching alignments... [280.92s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.65239s] Building query seed array... [2.73834s] Computing hash join... [4.61017s] Building seed filter... [0.077793s] Searching alignments... [342.935s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.9688s] Building query seed array... [2.67548s] Computing hash join... [4.38597s] Building seed filter... [0.076341s] Searching alignments... [261.338s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.4259s] Building query seed array... [3.08202s] Computing hash join... [4.41632s] Building seed filter... [0.077779s] Searching alignments... [187.743s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3954s] Building query seed array... [3.10131s] Computing hash join... [4.46297s] Building seed filter... [0.076445s] Searching alignments... [247.294s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.59362s] Building query seed array... [2.42459s] Computing hash join... [4.43247s] Building seed filter... [0.084523s] Searching alignments... [240.137s] Deallocating buffers... [0.128381s] Opening temporary output file... [0.001276s] Computing alignments... [905.459s] Deallocating reference... [0.070956s] Loading reference sequences... [480.956s] Masking reference... [57.5255s] Initializing temporary storage... [0.00405s] Building reference histograms... [12.647s] Allocating buffers... [0.000187s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.15101s] Building query seed array... [2.80076s] Computing hash join... [4.66333s] Building seed filter... [0.080233s] Searching alignments... [263.88s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.307s] Building query seed array... [3.27224s] Computing hash join... [4.63415s] Building seed filter... [0.080847s] Searching alignments... [248.459s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5835s] Building query seed array... [3.43705s] Computing hash join... [4.6196s] Building seed filter... [0.079879s] Searching alignments... [198.919s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.68035s] Building query seed array... [2.68494s] Computing hash join... [4.57994s] Building seed filter... [0.09448s] Searching alignments... [210.218s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.66709s] Building query seed array... [2.62886s] Computing hash join... [4.37685s] Building seed filter... [0.081486s] Searching alignments... [156.373s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2046s] Building query seed array... [2.98694s] Computing hash join... [4.46868s] Building seed filter... [0.078011s] Searching alignments... [141.402s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4166s] Building query seed array... [3.05579s] Computing hash join... [4.47664s] Building seed filter... [0.088922s] Searching alignments... [153.213s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.5861s] Building query seed array... [2.46189s] Computing hash join... [4.38269s] Building seed filter... [0.081031s] Searching alignments... [148.843s] Deallocating buffers... [0.127471s] Opening temporary output file... [0.001148s] Computing alignments... [613.815s] Deallocating reference... [0.066469s] Loading reference sequences... [431.122s] Masking reference... [58.3036s] Initializing temporary storage... [0.005061s] Building reference histograms... [12.8796s] Allocating buffers... [0.000184s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.92469s] Building query seed array... [2.69289s] Computing hash join... [4.59807s] Building seed filter... [0.089099s] Searching alignments... [264.73s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.178s] Building query seed array... [3.23149s] Computing hash join... [4.66013s] Building seed filter... [0.082937s] Searching alignments... [256.94s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4975s] Building query seed array... [3.27594s] Computing hash join... [4.61538s] Building seed filter... [0.083732s] Searching alignments... [201.907s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.86622s] Building query seed array... [2.74639s] Computing hash join... [4.60307s] Building seed filter... [0.08125s] Searching alignments... [212.745s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.73277s] Building query seed array... [2.50903s] Computing hash join... [4.41109s] Building seed filter... [0.084032s] Searching alignments... [156.45s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.5003s] Building query seed array... [3.04634s] Computing hash join... [4.46298s] Building seed filter... [0.085358s] Searching alignments... [132.271s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.7396s] Building query seed array... [3.11039s] Computing hash join... [4.45591s] Building seed filter... [0.077435s] Searching alignments... [152.658s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.5468s] Building query seed array... [2.49035s] Computing hash join... [4.43225s] Building seed filter... [0.079607s] Searching alignments... [165.56s] Deallocating buffers... [0.125023s] Opening temporary output file... [0.001186s] Computing alignments... [604.035s] Deallocating reference... [0.063866s] Loading reference sequences... [194.107s] Masking reference... [21.2822s] Initializing temporary storage... [0.004632s] Building reference histograms... [4.73604s] Allocating buffers... [0.000187s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.24627s] Building query seed array... [2.70925s] Computing hash join... [2.30738s] Building seed filter... [0.053229s] Searching alignments... [129.656s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22602s] Building query seed array... [3.67617s] Computing hash join... [2.40442s] Building seed filter... [0.047529s] Searching alignments... [148.376s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30156s] Building query seed array... [3.30647s] Computing hash join... [2.34956s] Building seed filter... [0.052449s] Searching alignments... [100.003s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.3164s] Building query seed array... [2.67237s] Computing hash join... [2.35773s] Building seed filter... [0.049989s] Searching alignments... [119.766s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25234s] Building query seed array... [2.42812s] Computing hash join... [2.16756s] Building seed filter... [0.046777s] Searching alignments... [82.6745s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.17414s] Building query seed array... [2.98734s] Computing hash join... [2.1905s] Building seed filter... [0.042709s] Searching alignments... [63.8755s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27091s] Building query seed array... [3.01341s] Computing hash join... [2.22711s] Building seed filter... [0.044825s] Searching alignments... [89.1804s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.28276s] Building query seed array... [2.41628s] Computing hash join... [2.18092s] Building seed filter... [0.046845s] Searching alignments... [95.7332s] Deallocating buffers... [0.052463s] Opening temporary output file... [0.027438s] Computing alignments... [291.911s] Deallocating reference... [0.029013s] Loading reference sequences... [0.098074s] Deallocating buffers... [0.025671s] Joining output blocks... [416.203s] Deallocating queries... [0.046169s] Loading query sequences... [3e-05s] Closing the input file... [4.6e-05s] Closing the output file... [0.361139s] Closing the database file... [3.3e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 18898.1s Reported 4970449331 pairwise alignments, 4970576956 HSPs. 7047106 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.069711s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.073087s] Opening the output file... [0.000294s] Loading query sequences... [101.71s] Masking queries... [87.5626s] Building query seed set... [0.444261s] Algorithm: Double-indexed Building query histograms... [3.41423s] Allocating buffers... [0.00065s] Loading reference sequences... [47.5915s] Masking reference... [59.2426s] Initializing temporary storage... [0.00459s] Building reference histograms... [12.4762s] Allocating buffers... [0.000193s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.95808s] Building query seed array... [2.29031s] Computing hash join... [4.36675s] Building seed filter... [0.068754s] Searching alignments... [157.213s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3633s] Building query seed array... [2.62828s] Computing hash join... [4.36275s] Building seed filter... [0.068148s] Searching alignments... [105.425s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4965s] Building query seed array... [2.77412s] Computing hash join... [4.38794s] Building seed filter... [0.068968s] Searching alignments... [166.863s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.63769s] Building query seed array... [2.30596s] Computing hash join... [4.43037s] Building seed filter... [0.075128s] Searching alignments... [91.6665s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.6259s] Building query seed array... [2.07098s] Computing hash join... [4.10383s] Building seed filter... [0.062136s] Searching alignments... [79.0423s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2459s] Building query seed array... [2.4657s] Computing hash join... [4.26153s] Building seed filter... [0.063758s] Searching alignments... [63.4718s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3911s] Building query seed array... [2.42809s] Computing hash join... [4.16419s] Building seed filter... [0.064276s] Searching alignments... [67.7978s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.6336s] Building query seed array... [1.99569s] Computing hash join... [4.1746s] Building seed filter... [0.066114s] Searching alignments... [57.3558s] Deallocating buffers... [0.112014s] Opening temporary output file... [0.001058s] Computing alignments... [262.151s] Deallocating reference... [0.077938s] Loading reference sequences... [499.647s] Masking reference... [58.1252s] Initializing temporary storage... [0.004124s] Building reference histograms... [12.6302s] Allocating buffers... [0.000189s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.33299s] Building query seed array... [2.32466s] Computing hash join... [4.32345s] Building seed filter... [0.082898s] Searching alignments... [129.544s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2745s] Building query seed array... [2.85849s] Computing hash join... [4.28364s] Building seed filter... [0.068655s] Searching alignments... [91.4205s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.434s] Building query seed array... [2.81779s] Computing hash join... [4.30373s] Building seed filter... [0.073732s] Searching alignments... [147.615s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.63281s] Building query seed array... [2.2321s] Computing hash join... [4.29521s] Building seed filter... [0.070344s] Searching alignments... [72.3985s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.63107s] Building query seed array... [2.00312s] Computing hash join... [4.11223s] Building seed filter... [0.064234s] Searching alignments... [68.8761s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1678s] Building query seed array... [2.4655s] Computing hash join... [4.20009s] Building seed filter... [0.067746s] Searching alignments... [51.0247s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.346s] Building query seed array... [2.59169s] Computing hash join... [4.10688s] Building seed filter... [0.069435s] Searching alignments... [55.8621s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.60117s] Building query seed array... [1.99072s] Computing hash join... [4.21427s] Building seed filter... [0.062889s] Searching alignments... [47.7564s] Deallocating buffers... [0.106049s] Opening temporary output file... [0.000971s] Computing alignments... [203.157s] Deallocating reference... [0.071488s] Loading reference sequences... [489.697s] Masking reference... [57.9622s] Initializing temporary storage... [0.004084s] Building reference histograms... [12.8384s] Allocating buffers... [0.000189s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.03131s] Building query seed array... [2.30815s] Computing hash join... [4.30706s] Building seed filter... [0.076414s] Searching alignments... [161.117s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3019s] Building query seed array... [2.72218s] Computing hash join... [4.35629s] Building seed filter... [0.068172s] Searching alignments... [104.951s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.486s] Building query seed array... [2.75512s] Computing hash join... [4.30646s] Building seed filter... [0.069325s] Searching alignments... [177.367s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.61337s] Building query seed array... [2.36497s] Computing hash join... [4.3245s] Building seed filter... [0.068251s] Searching alignments... [81.2626s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.67211s] Building query seed array... [2.01271s] Computing hash join... [4.14774s] Building seed filter... [0.06589s] Searching alignments... [86.9987s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2122s] Building query seed array... [2.4605s] Computing hash join... [4.21853s] Building seed filter... [0.064491s] Searching alignments... [55.764s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3885s] Building query seed array... [2.51192s] Computing hash join... [4.11596s] Building seed filter... [0.065401s] Searching alignments... [63.7043s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.52226s] Building query seed array... [2.02504s] Computing hash join... [4.13064s] Building seed filter... [0.06681s] Searching alignments... [53.5558s] Deallocating buffers... [0.128121s] Opening temporary output file... [0.000671s] Computing alignments... [258.559s] Deallocating reference... [0.072062s] Loading reference sequences... [40.2256s] Masking reference... [57.7379s] Initializing temporary storage... [0.004136s] Building reference histograms... [12.6422s] Allocating buffers... [0.000188s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.00659s] Building query seed array... [2.29014s] Computing hash join... [4.32121s] Building seed filter... [0.072186s] Searching alignments... [111.669s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3425s] Building query seed array... [2.70559s] Computing hash join... [4.42281s] Building seed filter... [0.064067s] Searching alignments... [90.6557s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.8674s] Building query seed array... [3.25638s] Computing hash join... [4.33026s] Building seed filter... [0.068356s] Searching alignments... [145.781s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.59032s] Building query seed array... [2.25249s] Computing hash join... [4.30802s] Building seed filter... [0.064388s] Searching alignments... [69.3753s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.72048s] Building query seed array... [2.06117s] Computing hash join... [4.13175s] Building seed filter... [0.067383s] Searching alignments... [64.362s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.154s] Building query seed array... [2.45799s] Computing hash join... [4.1541s] Building seed filter... [0.067709s] Searching alignments... [48.3975s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4066s] Building query seed array... [2.51683s] Computing hash join... [4.18344s] Building seed filter... [0.071205s] Searching alignments... [53.5435s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.90127s] Building query seed array... [2.10156s] Computing hash join... [4.18202s] Building seed filter... [0.069595s] Searching alignments... [44.7538s] Deallocating buffers... [0.107708s] Opening temporary output file... [0.001105s] Computing alignments... [188.117s] Deallocating reference... [0.065244s] Loading reference sequences... [450.049s] Masking reference... [58.6426s] Initializing temporary storage... [0.005056s] Building reference histograms... [12.6729s] Allocating buffers... [0.000194s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.94361s] Building query seed array... [2.24723s] Computing hash join... [4.27154s] Building seed filter... [0.071324s] Searching alignments... [109.812s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.3128s] Building query seed array... [2.63951s] Computing hash join... [4.30526s] Building seed filter... [0.072484s] Searching alignments... [89.0303s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.7608s] Building query seed array... [2.7689s] Computing hash join... [4.33905s] Building seed filter... [0.080269s] Searching alignments... [135.655s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.61553s] Building query seed array... [2.24743s] Computing hash join... [4.31272s] Building seed filter... [0.071695s] Searching alignments... [63.8922s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.66315s] Building query seed array... [2.0418s] Computing hash join... [4.11003s] Building seed filter... [0.067201s] Searching alignments... [62.4514s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1462s] Building query seed array... [2.41764s] Computing hash join... [4.16985s] Building seed filter... [0.064623s] Searching alignments... [47.9124s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3287s] Building query seed array... [2.43942s] Computing hash join... [4.28229s] Building seed filter... [0.065933s] Searching alignments... [54.2237s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.96974s] Building query seed array... [2.09138s] Computing hash join... [4.15612s] Building seed filter... [0.068331s] Searching alignments... [44.8118s] Deallocating buffers... [0.105226s] Opening temporary output file... [0.000932s] Computing alignments... [179.896s] Deallocating reference... [0.081155s] Loading reference sequences... [21.3055s] Masking reference... [21.8419s] Initializing temporary storage... [0.003565s] Building reference histograms... [4.81021s] Allocating buffers... [0.000203s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.33373s] Building query seed array... [2.24297s] Computing hash join... [2.06646s] Building seed filter... [0.046189s] Searching alignments... [48.367s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.24097s] Building query seed array... [2.70413s] Computing hash join... [2.07432s] Building seed filter... [0.040231s] Searching alignments... [37.2318s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30691s] Building query seed array... [2.71681s] Computing hash join... [2.09581s] Building seed filter... [0.044567s] Searching alignments... [55.346s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.24821s] Building query seed array... [2.26783s] Computing hash join... [2.10885s] Building seed filter... [0.049143s] Searching alignments... [30.9927s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.24649s] Building query seed array... [2.00206s] Computing hash join... [1.96561s] Building seed filter... [0.039589s] Searching alignments... [25.9248s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.20167s] Building query seed array... [2.42932s] Computing hash join... [1.99141s] Building seed filter... [0.0405s] Searching alignments... [20.2938s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.26794s] Building query seed array... [2.50001s] Computing hash join... [1.96512s] Building seed filter... [0.037853s] Searching alignments... [22.9192s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.37241s] Building query seed array... [2.03177s] Computing hash join... [2.02597s] Building seed filter... [0.045185s] Searching alignments... [20.2322s] Deallocating buffers... [0.045686s] Opening temporary output file... [0.02777s] Computing alignments... [94.3029s] Deallocating reference... [0.029741s] Loading reference sequences... [0.102661s] Deallocating buffers... [0.020681s] Joining output blocks... [141.932s] Deallocating queries... [0.05125s] Loading query sequences... [3.4e-05s] Closing the input file... [6.8e-05s] Closing the output file... [0.301669s] Closing the database file... [6.2e-05s] Deallocating taxonomy... [2.6e-05s] Total time = 7926.49s Reported 538219007 pairwise alignments, 538261347 HSPs. 3677002 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.100578s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.070938s] Opening the output file... [0.000343s] Loading query sequences... [102.808s] Masking queries... [66.6009s] Building query seed set... [0.372167s] Algorithm: Double-indexed Building query histograms... [3.40814s] Allocating buffers... [0.00068s] Loading reference sequences... [46.4059s] Masking reference... [58.955s] Initializing temporary storage... [0.00456s] Building reference histograms... [12.5765s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.95664s] Building query seed array... [2.2895s] Computing hash join... [4.34618s] Building seed filter... [0.072837s] Searching alignments... [153.469s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2558s] Building query seed array... [2.7673s] Computing hash join... [4.37466s] Building seed filter... [0.069083s] Searching alignments... [109.403s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5103s] Building query seed array... [2.67022s] Computing hash join... [4.3451s] Building seed filter... [0.07143s] Searching alignments... [167.372s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.70147s] Building query seed array... [2.19798s] Computing hash join... [4.3584s] Building seed filter... [0.071946s] Searching alignments... [91.1567s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.63741s] Building query seed array... [2.10792s] Computing hash join... [4.19768s] Building seed filter... [0.075447s] Searching alignments... [79.6858s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1734s] Building query seed array... [2.44349s] Computing hash join... [4.19715s] Building seed filter... [0.068391s] Searching alignments... [61.8403s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3599s] Building query seed array... [2.47404s] Computing hash join... [4.26158s] Building seed filter... [0.072306s] Searching alignments... [67.6933s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.63459s] Building query seed array... [2.03136s] Computing hash join... [4.19615s] Building seed filter... [0.070741s] Searching alignments... [56.5592s] Deallocating buffers... [0.106539s] Opening temporary output file... [0.001036s] Computing alignments... [263.844s] Deallocating reference... [0.090294s] Loading reference sequences... [490.921s] Masking reference... [57.7323s] Initializing temporary storage... [0.004086s] Building reference histograms... [13.2283s] Allocating buffers... [0.000185s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.93193s] Building query seed array... [2.25482s] Computing hash join... [4.37628s] Building seed filter... [0.079868s] Searching alignments... [125.339s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3045s] Building query seed array... [2.70384s] Computing hash join... [4.39296s] Building seed filter... [0.074336s] Searching alignments... [93.7771s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4998s] Building query seed array... [2.72988s] Computing hash join... [4.31007s] Building seed filter... [0.080708s] Searching alignments... [146.069s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.62265s] Building query seed array... [2.22603s] Computing hash join... [4.30981s] Building seed filter... [0.073577s] Searching alignments... [70.4716s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.65911s] Building query seed array... [2.01395s] Computing hash join... [4.13874s] Building seed filter... [0.069982s] Searching alignments... [63.6888s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1669s] Building query seed array... [2.51448s] Computing hash join... [4.15931s] Building seed filter... [0.066847s] Searching alignments... [50.8057s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4672s] Building query seed array... [2.51926s] Computing hash join... [4.23533s] Building seed filter... [0.068876s] Searching alignments... [55.7907s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.99164s] Building query seed array... [2.1127s] Computing hash join... [4.1897s] Building seed filter... [0.069615s] Searching alignments... [47.6595s] Deallocating buffers... [0.106575s] Opening temporary output file... [0.001402s] Computing alignments... [198.26s] Deallocating reference... [0.071095s] Loading reference sequences... [500.296s] Masking reference... [57.6244s] Initializing temporary storage... [0.004101s] Building reference histograms... [12.619s] Allocating buffers... [0.000199s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.05665s] Building query seed array... [2.28555s] Computing hash join... [4.35099s] Building seed filter... [0.074022s] Searching alignments... [156.319s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3283s] Building query seed array... [2.74126s] Computing hash join... [4.34615s] Building seed filter... [0.069451s] Searching alignments... [104.948s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.9828s] Building query seed array... [2.77116s] Computing hash join... [4.50128s] Building seed filter... [0.072436s] Searching alignments... [174.732s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.59306s] Building query seed array... [2.20186s] Computing hash join... [4.33378s] Building seed filter... [0.080311s] Searching alignments... [80.1837s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.60877s] Building query seed array... [2.12225s] Computing hash join... [4.14519s] Building seed filter... [0.062866s] Searching alignments... [71.833s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1546s] Building query seed array... [2.53133s] Computing hash join... [4.18695s] Building seed filter... [0.069023s] Searching alignments... [56.3221s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4325s] Building query seed array... [2.49545s] Computing hash join... [4.194s] Building seed filter... [0.075342s] Searching alignments... [64.5873s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.60392s] Building query seed array... [1.98609s] Computing hash join... [4.29029s] Building seed filter... [0.070251s] Searching alignments... [53.5983s] Deallocating buffers... [0.112171s] Opening temporary output file... [0.001089s] Computing alignments... [253.231s] Deallocating reference... [0.070849s] Loading reference sequences... [468.113s] Masking reference... [57.8218s] Initializing temporary storage... [0.003979s] Building reference histograms... [13.0645s] Allocating buffers... [0.00019s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.8877s] Building query seed array... [2.36679s] Computing hash join... [4.50193s] Building seed filter... [0.069918s] Searching alignments... [110.532s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3469s] Building query seed array... [2.99526s] Computing hash join... [4.42167s] Building seed filter... [0.070264s] Searching alignments... [91.1522s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.6359s] Building query seed array... [2.76885s] Computing hash join... [4.38724s] Building seed filter... [0.071804s] Searching alignments... [145.604s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.73649s] Building query seed array... [2.23475s] Computing hash join... [4.28799s] Building seed filter... [0.075821s] Searching alignments... [69.3665s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.08282s] Building query seed array... [2.41546s] Computing hash join... [4.25061s] Building seed filter... [0.068147s] Searching alignments... [58.5834s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.6714s] Building query seed array... [2.50409s] Computing hash join... [4.19041s] Building seed filter... [0.069852s] Searching alignments... [48.5549s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.5758s] Building query seed array... [2.49917s] Computing hash join... [4.29356s] Building seed filter... [0.065624s] Searching alignments... [53.5834s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.68909s] Building query seed array... [2.02928s] Computing hash join... [4.22413s] Building seed filter... [0.07388s] Searching alignments... [44.2639s] Deallocating buffers... [0.107315s] Opening temporary output file... [0.003973s] Computing alignments... [186.94s] Deallocating reference... [0.082609s] Loading reference sequences... [446.167s] Masking reference... [57.5976s] Initializing temporary storage... [0.004623s] Building reference histograms... [12.2892s] Allocating buffers... [0.000207s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.96553s] Building query seed array... [2.35691s] Computing hash join... [4.45615s] Building seed filter... [0.078747s] Searching alignments... [106.913s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.226s] Building query seed array... [2.64573s] Computing hash join... [4.37122s] Building seed filter... [0.074187s] Searching alignments... [89.3352s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4639s] Building query seed array... [2.72015s] Computing hash join... [4.41711s] Building seed filter... [0.079328s] Searching alignments... [133.486s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.67732s] Building query seed array... [2.24431s] Computing hash join... [4.33507s] Building seed filter... [0.074785s] Searching alignments... [63.5128s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.60302s] Building query seed array... [2.03564s] Computing hash join... [4.20089s] Building seed filter... [0.070088s] Searching alignments... [58.8162s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.0779s] Building query seed array... [2.42132s] Computing hash join... [4.1949s] Building seed filter... [0.070995s] Searching alignments... [47.3937s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.8304s] Building query seed array... [2.5166s] Computing hash join... [4.20624s] Building seed filter... [0.069504s] Searching alignments... [53.8494s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.92849s] Building query seed array... [2.19543s] Computing hash join... [4.17964s] Building seed filter... [0.069395s] Searching alignments... [44.2405s] Deallocating buffers... [0.106109s] Opening temporary output file... [0.000977s] Computing alignments... [178.927s] Deallocating reference... [0.064722s] Loading reference sequences... [191.342s] Masking reference... [21.5825s] Initializing temporary storage... [0.003951s] Building reference histograms... [4.8151s] Allocating buffers... [0.000214s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.31716s] Building query seed array... [2.31606s] Computing hash join... [2.09204s] Building seed filter... [0.050211s] Searching alignments... [46.3531s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23902s] Building query seed array... [2.68578s] Computing hash join... [2.08991s] Building seed filter... [0.052782s] Searching alignments... [37.3634s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.35212s] Building query seed array... [2.68653s] Computing hash join... [2.14525s] Building seed filter... [0.047634s] Searching alignments... [53.7122s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26195s] Building query seed array... [2.23166s] Computing hash join... [2.13119s] Building seed filter... [0.052416s] Searching alignments... [30.1068s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.27299s] Building query seed array... [2.00399s] Computing hash join... [1.98267s] Building seed filter... [0.041124s] Searching alignments... [25.092s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.2214s] Building query seed array... [2.37936s] Computing hash join... [2.00687s] Building seed filter... [0.043639s] Searching alignments... [19.7435s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27089s] Building query seed array... [2.42819s] Computing hash join... [2.01979s] Building seed filter... [0.041892s] Searching alignments... [22.5187s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.21492s] Building query seed array... [2.01714s] Computing hash join... [2.03258s] Building seed filter... [0.041569s] Searching alignments... [18.96s] Deallocating buffers... [0.042189s] Opening temporary output file... [0.021899s] Computing alignments... [91.6699s] Deallocating reference... [0.028996s] Loading reference sequences... [0.05985s] Deallocating buffers... [0.020156s] Joining output blocks... [138.377s] Deallocating queries... [0.045375s] Loading query sequences... [3e-05s] Closing the input file... [5e-05s] Closing the output file... [0.370042s] Closing the database file... [2.9e-05s] Deallocating taxonomy... [1e-05s] Total time = 8426.73s Reported 533838533 pairwise alignments, 533883031 HSPs. 3628624 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.127638s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.156442s] Opening the output file... [0.000699s] Loading query sequences... [97.3056s] Masking queries... [59.0305s] Building query seed set... [0.39672s] Algorithm: Double-indexed Building query histograms... [3.57632s] Allocating buffers... [0.000693s] Loading reference sequences... [47.1235s] Masking reference... [59.0013s] Initializing temporary storage... [0.004621s] Building reference histograms... [11.9896s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.90186s] Building query seed array... [2.30095s] Computing hash join... [4.31445s] Building seed filter... [0.062891s] Searching alignments... [381.959s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3472s] Building query seed array... [2.7981s] Computing hash join... [4.30911s] Building seed filter... [0.055814s] Searching alignments... [243.79s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5282s] Building query seed array... [2.79527s] Computing hash join... [4.3544s] Building seed filter... [0.059871s] Searching alignments... [206.942s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.65898s] Building query seed array... [2.31645s] Computing hash join... [4.32459s] Building seed filter... [0.064355s] Searching alignments... [190.404s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.69363s] Building query seed array... [2.04776s] Computing hash join... [4.226s] Building seed filter... [0.05354s] Searching alignments... [185.746s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1266s] Building query seed array... [2.55245s] Computing hash join... [4.18261s] Building seed filter... [0.057469s] Searching alignments... [141.415s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4757s] Building query seed array... [2.58096s] Computing hash join... [4.26033s] Building seed filter... [0.056589s] Searching alignments... [172.723s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.5524s] Building query seed array... [2.08348s] Computing hash join... [4.12491s] Building seed filter... [0.060522s] Searching alignments... [129.235s] Deallocating buffers... [0.127425s] Opening temporary output file... [0.001997s] Computing alignments... [708.792s] Deallocating reference... [0.08458s] Loading reference sequences... [515.503s] Masking reference... [57.5759s] Initializing temporary storage... [0.004609s] Building reference histograms... [12.3836s] Allocating buffers... [0.000202s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.22145s] Building query seed array... [2.40678s] Computing hash join... [4.2579s] Building seed filter... [0.062117s] Searching alignments... [277.128s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3639s] Building query seed array... [3.12886s] Computing hash join... [4.33898s] Building seed filter... [0.054686s] Searching alignments... [171.763s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.7398s] Building query seed array... [2.89829s] Computing hash join... [4.29154s] Building seed filter... [0.065491s] Searching alignments... [155.484s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.8292s] Building query seed array... [2.32664s] Computing hash join... [4.34328s] Building seed filter... [0.05703s] Searching alignments... [144.853s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [10.6225s] Building query seed array... [2.14811s] Computing hash join... [4.31363s] Building seed filter... [0.059965s] Searching alignments... [131.381s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1432s] Building query seed array... [2.53798s] Computing hash join... [4.22652s] Building seed filter... [0.05916s] Searching alignments... [107.257s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.6648s] Building query seed array... [2.62881s] Computing hash join... [4.12666s] Building seed filter... [0.055404s] Searching alignments... [125.134s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.82762s] Building query seed array... [2.15645s] Computing hash join... [4.06723s] Building seed filter... [0.053293s] Searching alignments... [98.3852s] Deallocating buffers... [0.119775s] Opening temporary output file... [0.001869s] Computing alignments... [512.846s] Deallocating reference... [0.071087s] Loading reference sequences... [510.416s] Masking reference... [57.5108s] Initializing temporary storage... [0.004083s] Building reference histograms... [12.7033s] Allocating buffers... [0.000201s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.90928s] Building query seed array... [2.35695s] Computing hash join... [4.31629s] Building seed filter... [0.059638s] Searching alignments... [326.427s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.204s] Building query seed array... [2.79981s] Computing hash join... [4.27851s] Building seed filter... [0.056888s] Searching alignments... [194.594s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.6004s] Building query seed array... [2.87061s] Computing hash join... [4.27901s] Building seed filter... [0.057703s] Searching alignments... [183.582s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.67037s] Building query seed array... [2.3242s] Computing hash join... [4.32674s] Building seed filter... [0.05847s] Searching alignments... [164.383s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.66667s] Building query seed array... [2.05319s] Computing hash join... [4.14444s] Building seed filter... [0.055354s] Searching alignments... [153.917s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1367s] Building query seed array... [2.55307s] Computing hash join... [4.21985s] Building seed filter... [0.053966s] Searching alignments... [136.635s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.6643s] Building query seed array... [2.63068s] Computing hash join... [4.20278s] Building seed filter... [0.052811s] Searching alignments... [147.054s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.61844s] Building query seed array... [2.14743s] Computing hash join... [4.13416s] Building seed filter... [0.05802s] Searching alignments... [112.556s] Deallocating buffers... [0.124912s] Opening temporary output file... [0.001162s] Computing alignments... [640.381s] Deallocating reference... [0.08475s] Loading reference sequences... [458.551s] Masking reference... [57.9507s] Initializing temporary storage... [0.005158s] Building reference histograms... [12.5654s] Allocating buffers... [0.000212s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.95339s] Building query seed array... [2.27897s] Computing hash join... [4.30381s] Building seed filter... [0.063967s] Searching alignments... [224.299s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.5218s] Building query seed array... [2.8119s] Computing hash join... [4.43842s] Building seed filter... [0.069202s] Searching alignments... [144.415s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4624s] Building query seed array... [2.84449s] Computing hash join... [4.29959s] Building seed filter... [0.057867s] Searching alignments... [127.993s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.73049s] Building query seed array... [2.31282s] Computing hash join... [4.36361s] Building seed filter... [0.054002s] Searching alignments... [120.542s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.67389s] Building query seed array... [2.10166s] Computing hash join... [4.18271s] Building seed filter... [0.0528s] Searching alignments... [108.318s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2343s] Building query seed array... [2.53611s] Computing hash join... [4.26024s] Building seed filter... [0.051024s] Searching alignments... [93.4655s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3854s] Building query seed array... [2.62271s] Computing hash join... [4.16342s] Building seed filter... [0.055372s] Searching alignments... [97.4527s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.57276s] Building query seed array... [2.14767s] Computing hash join... [4.17612s] Building seed filter... [0.052214s] Searching alignments... [76.7764s] Deallocating buffers... [0.121823s] Opening temporary output file... [0.001183s] Computing alignments... [435.23s] Deallocating reference... [0.074583s] Loading reference sequences... [442.331s] Masking reference... [57.7006s] Initializing temporary storage... [0.004007s] Building reference histograms... [12.813s] Allocating buffers... [0.000187s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.94953s] Building query seed array... [2.34758s] Computing hash join... [4.29676s] Building seed filter... [0.066889s] Searching alignments... [214.214s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.5503s] Building query seed array... [2.83218s] Computing hash join... [4.32278s] Building seed filter... [0.063253s] Searching alignments... [148.744s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4884s] Building query seed array... [2.81529s] Computing hash join... [4.2918s] Building seed filter... [0.06719s] Searching alignments... [130.901s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.68231s] Building query seed array... [2.3067s] Computing hash join... [4.2923s] Building seed filter... [0.058429s] Searching alignments... [116.815s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.64562s] Building query seed array... [2.10393s] Computing hash join... [4.19179s] Building seed filter... [0.053858s] Searching alignments... [109.122s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1117s] Building query seed array... [2.46787s] Computing hash join... [4.34786s] Building seed filter... [0.059853s] Searching alignments... [93.2924s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3199s] Building query seed array... [2.54892s] Computing hash join... [4.22253s] Building seed filter... [0.059503s] Searching alignments... [100.232s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.82799s] Building query seed array... [2.144s] Computing hash join... [4.08024s] Building seed filter... [0.064418s] Searching alignments... [80.7923s] Deallocating buffers... [0.121828s] Opening temporary output file... [0.001179s] Computing alignments... [425.056s] Deallocating reference... [0.07596s] Loading reference sequences... [16.4181s] Masking reference... [21.1815s] Initializing temporary storage... [0.003616s] Building reference histograms... [4.54241s] Allocating buffers... [0.000184s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.24345s] Building query seed array... [2.35282s] Computing hash join... [2.04716s] Building seed filter... [0.038126s] Searching alignments... [111.792s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23361s] Building query seed array... [2.79102s] Computing hash join... [2.13139s] Building seed filter... [0.034993s] Searching alignments... [70.4836s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.35983s] Building query seed array... [2.76761s] Computing hash join... [2.11073s] Building seed filter... [0.035507s] Searching alignments... [62.7972s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.40692s] Building query seed array... [2.25385s] Computing hash join... [2.1185s] Building seed filter... [0.035722s] Searching alignments... [58.3325s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25687s] Building query seed array... [2.08686s] Computing hash join... [1.98912s] Building seed filter... [0.037147s] Searching alignments... [56.7761s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.17375s] Building query seed array... [2.50222s] Computing hash join... [2.01043s] Building seed filter... [0.035622s] Searching alignments... [42.0158s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.29678s] Building query seed array... [2.51363s] Computing hash join... [1.98009s] Building seed filter... [0.032195s] Searching alignments... [53.7524s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.39039s] Building query seed array... [2.0329s] Computing hash join... [1.96863s] Building seed filter... [0.030707s] Searching alignments... [41.1807s] Deallocating buffers... [0.045473s] Opening temporary output file... [0.01804s] Computing alignments... [217.127s] Deallocating reference... [0.028623s] Loading reference sequences... [0.032781s] Deallocating buffers... [0.021074s] Joining output blocks... [329.967s] Deallocating queries... [0.041465s] Loading query sequences... [2.9e-05s] Closing the input file... [4.8e-05s] Closing the output file... [0.405634s] Closing the database file... [3.6e-05s] Deallocating taxonomy... [1e-05s] Total time = 13310.5s Reported 3100348521 pairwise alignments, 3100503309 HSPs. 5076248 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.102152s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.081123s] Opening the output file... [0.000312s] Loading query sequences... [97.8084s] Masking queries... [64.2446s] Building query seed set... [0.432779s] Algorithm: Double-indexed Building query histograms... [3.41508s] Allocating buffers... [0.000702s] Loading reference sequences... [47.9183s] Masking reference... [59.1649s] Initializing temporary storage... [0.003899s] Building reference histograms... [12.7338s] Allocating buffers... [0.000179s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.91512s] Building query seed array... [2.3093s] Computing hash join... [4.35617s] Building seed filter... [0.067011s] Searching alignments... [372.269s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.283s] Building query seed array... [2.70588s] Computing hash join... [4.38087s] Building seed filter... [0.062361s] Searching alignments... [242.449s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4822s] Building query seed array... [2.90899s] Computing hash join... [4.33627s] Building seed filter... [0.066656s] Searching alignments... [202.783s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.65158s] Building query seed array... [2.2469s] Computing hash join... [4.39084s] Building seed filter... [0.064032s] Searching alignments... [188.753s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.60303s] Building query seed array... [2.13984s] Computing hash join... [4.17834s] Building seed filter... [0.066972s] Searching alignments... [185.004s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2649s] Building query seed array... [2.57314s] Computing hash join... [4.24498s] Building seed filter... [0.05906s] Searching alignments... [140.511s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3401s] Building query seed array... [2.61253s] Computing hash join... [4.23445s] Building seed filter... [0.063882s] Searching alignments... [169.17s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.60869s] Building query seed array... [2.04472s] Computing hash join... [4.17958s] Building seed filter... [0.07147s] Searching alignments... [127.141s] Deallocating buffers... [0.120868s] Opening temporary output file... [0.001048s] Computing alignments... [680.389s] Deallocating reference... [0.092741s] Loading reference sequences... [458.735s] Masking reference... [58.1493s] Initializing temporary storage... [0.003944s] Building reference histograms... [13.0385s] Allocating buffers... [0.000201s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.98466s] Building query seed array... [2.34421s] Computing hash join... [4.42925s] Building seed filter... [0.069141s] Searching alignments... [272.102s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2949s] Building query seed array... [2.79827s] Computing hash join... [4.39506s] Building seed filter... [0.067825s] Searching alignments... [164.914s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.6604s] Building query seed array... [3.1914s] Computing hash join... [4.41536s] Building seed filter... [0.067049s] Searching alignments... [154.069s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.63027s] Building query seed array... [2.36861s] Computing hash join... [4.34024s] Building seed filter... [0.065892s] Searching alignments... [142.168s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.95892s] Building query seed array... [2.15362s] Computing hash join... [4.15713s] Building seed filter... [0.062454s] Searching alignments... [129.79s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1727s] Building query seed array... [2.55277s] Computing hash join... [4.2354s] Building seed filter... [0.063114s] Searching alignments... [106.261s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4287s] Building query seed array... [2.49465s] Computing hash join... [4.18826s] Building seed filter... [0.05956s] Searching alignments... [123.532s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.67742s] Building query seed array... [2.03844s] Computing hash join... [4.15731s] Building seed filter... [0.060732s] Searching alignments... [97.381s] Deallocating buffers... [0.108596s] Opening temporary output file... [0.000529s] Computing alignments... [501.125s] Deallocating reference... [0.070745s] Loading reference sequences... [443.545s] Masking reference... [57.6398s] Initializing temporary storage... [0.005058s] Building reference histograms... [12.538s] Allocating buffers... [0.000212s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.89646s] Building query seed array... [2.30902s] Computing hash join... [4.38014s] Building seed filter... [0.067774s] Searching alignments... [317.108s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2727s] Building query seed array... [2.83123s] Computing hash join... [4.3275s] Building seed filter... [0.064534s] Searching alignments... [191.676s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4861s] Building query seed array... [2.83439s] Computing hash join... [4.4002s] Building seed filter... [0.062843s] Searching alignments... [181.339s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.60498s] Building query seed array... [2.28897s] Computing hash join... [4.33572s] Building seed filter... [0.0683s] Searching alignments... [161.262s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.70902s] Building query seed array... [2.11513s] Computing hash join... [4.15759s] Building seed filter... [0.058663s] Searching alignments... [152.052s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1893s] Building query seed array... [2.53947s] Computing hash join... [4.21955s] Building seed filter... [0.06144s] Searching alignments... [123.608s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.6894s] Building query seed array... [2.67252s] Computing hash join... [4.21656s] Building seed filter... [0.060256s] Searching alignments... [142.863s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.59869s] Building query seed array... [2.04753s] Computing hash join... [4.18903s] Building seed filter... [0.060355s] Searching alignments... [111.119s] Deallocating buffers... [0.10966s] Opening temporary output file... [0.000576s] Computing alignments... [624.592s] Deallocating reference... [0.085197s] Loading reference sequences... [426.318s] Masking reference... [58.3939s] Initializing temporary storage... [0.005126s] Building reference histograms... [13.139s] Allocating buffers... [0.000187s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.88826s] Building query seed array... [2.27042s] Computing hash join... [4.46939s] Building seed filter... [0.079371s] Searching alignments... [220.23s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.4544s] Building query seed array... [2.77377s] Computing hash join... [4.4202s] Building seed filter... [0.062014s] Searching alignments... [144.451s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5912s] Building query seed array... [2.87342s] Computing hash join... [4.38863s] Building seed filter... [0.064588s] Searching alignments... [126.02s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.6334s] Building query seed array... [2.32738s] Computing hash join... [4.40637s] Building seed filter... [0.06568s] Searching alignments... [117.814s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.95839s] Building query seed array... [2.13433s] Computing hash join... [4.20304s] Building seed filter... [0.062844s] Searching alignments... [106.876s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1974s] Building query seed array... [2.5347s] Computing hash join... [4.28071s] Building seed filter... [0.059922s] Searching alignments... [90.6544s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4594s] Building query seed array... [2.59079s] Computing hash join... [4.22442s] Building seed filter... [0.059653s] Searching alignments... [97.7491s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.58251s] Building query seed array... [2.1145s] Computing hash join... [4.23115s] Building seed filter... [0.061777s] Searching alignments... [75.8396s] Deallocating buffers... [0.106131s] Opening temporary output file... [0.00097s] Computing alignments... [428.088s] Deallocating reference... [0.080654s] Loading reference sequences... [420.977s] Masking reference... [57.7506s] Initializing temporary storage... [0.004042s] Building reference histograms... [12.3671s] Allocating buffers... [0.000205s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.91186s] Building query seed array... [2.28199s] Computing hash join... [4.37014s] Building seed filter... [0.070107s] Searching alignments... [214.047s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2513s] Building query seed array... [2.70669s] Computing hash join... [4.35835s] Building seed filter... [0.062033s] Searching alignments... [134.892s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4608s] Building query seed array... [2.8151s] Computing hash join... [4.34592s] Building seed filter... [0.067386s] Searching alignments... [128.748s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.62341s] Building query seed array... [2.31889s] Computing hash join... [4.3916s] Building seed filter... [0.065386s] Searching alignments... [114.566s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.62394s] Building query seed array... [2.45637s] Computing hash join... [4.29666s] Building seed filter... [0.058415s] Searching alignments... [108.867s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2892s] Building query seed array... [2.57411s] Computing hash join... [4.28497s] Building seed filter... [0.064864s] Searching alignments... [90.6025s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.325s] Building query seed array... [2.5614s] Computing hash join... [4.15918s] Building seed filter... [0.063472s] Searching alignments... [98.2952s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.79478s] Building query seed array... [2.47275s] Computing hash join... [4.15074s] Building seed filter... [0.063113s] Searching alignments... [79.6296s] Deallocating buffers... [0.122665s] Opening temporary output file... [0.00124s] Computing alignments... [416.122s] Deallocating reference... [0.063615s] Loading reference sequences... [16.4251s] Masking reference... [21.1288s] Initializing temporary storage... [0.003527s] Building reference histograms... [4.85003s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.33166s] Building query seed array... [2.27269s] Computing hash join... [2.06237s] Building seed filter... [0.042708s] Searching alignments... [110.272s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21004s] Building query seed array... [2.75602s] Computing hash join... [2.1033s] Building seed filter... [0.037312s] Searching alignments... [68.8547s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.46654s] Building query seed array... [2.83583s] Computing hash join... [2.1671s] Building seed filter... [0.04445s] Searching alignments... [60.8808s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.31499s] Building query seed array... [2.25472s] Computing hash join... [2.10749s] Building seed filter... [0.037959s] Searching alignments... [58.4351s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.31092s] Building query seed array... [2.05183s] Computing hash join... [2.01326s] Building seed filter... [0.041552s] Searching alignments... [55.5047s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.19491s] Building query seed array... [2.47908s] Computing hash join... [2.02733s] Building seed filter... [0.037971s] Searching alignments... [41.4505s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.38769s] Building query seed array... [2.52772s] Computing hash join... [1.98347s] Building seed filter... [0.039207s] Searching alignments... [52.9477s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.21786s] Building query seed array... [2.08386s] Computing hash join... [1.95836s] Building seed filter... [0.03951s] Searching alignments... [40.8534s] Deallocating buffers... [0.042615s] Opening temporary output file... [0.018424s] Computing alignments... [212.535s] Deallocating reference... [0.029527s] Loading reference sequences... [0.060451s] Deallocating buffers... [0.021848s] Joining output blocks... [308.723s] Deallocating queries... [0.061375s] Loading query sequences... [3.6e-05s] Closing the input file... [0.000101s] Closing the output file... [0.364306s] Closing the database file... [6.9e-05s] Deallocating taxonomy... [2.4e-05s] Total time = 12914.6s Reported 3059706909 pairwise alignments, 3059859254 HSPs. 4953688 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.094352s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.210607s] Opening the output file... [0.000325s] Loading query sequences... [85.0492s] Masking queries... [57.1693s] Building query seed set... [0.379097s] Algorithm: Double-indexed Building query histograms... [3.06571s] Allocating buffers... [0.000659s] Loading reference sequences... [46.4457s] Masking reference... [58.8199s] Initializing temporary storage... [0.005357s] Building reference histograms... [12.8047s] Allocating buffers... [0.000193s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.97331s] Building query seed array... [2.04541s] Computing hash join... [4.13169s] Building seed filter... [0.044157s] Searching alignments... [286.309s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.323s] Building query seed array... [2.38564s] Computing hash join... [4.10428s] Building seed filter... [0.038483s] Searching alignments... [261.973s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5037s] Building query seed array... [2.54643s] Computing hash join... [4.10916s] Building seed filter... [0.038772s] Searching alignments... [159.556s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.63264s] Building query seed array... [2.04055s] Computing hash join... [4.15691s] Building seed filter... [0.044509s] Searching alignments... [157.371s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.63308s] Building query seed array... [1.8506s] Computing hash join... [3.89075s] Building seed filter... [0.039574s] Searching alignments... [229.008s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1419s] Building query seed array... [2.18388s] Computing hash join... [4.05685s] Building seed filter... [0.041556s] Searching alignments... [118.564s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.5169s] Building query seed array... [2.29843s] Computing hash join... [3.96035s] Building seed filter... [0.036229s] Searching alignments... [110.674s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.63877s] Building query seed array... [1.81502s] Computing hash join... [3.91835s] Building seed filter... [0.038009s] Searching alignments... [124.959s] Deallocating buffers... [0.119686s] Opening temporary output file... [0.000564s] Computing alignments... [548.827s] Deallocating reference... [0.089467s] Loading reference sequences... [50.719s] Masking reference... [58.3017s] Initializing temporary storage... [0.004529s] Building reference histograms... [12.6545s] Allocating buffers... [0.000187s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.92183s] Building query seed array... [2.10976s] Computing hash join... [4.0846s] Building seed filter... [0.042762s] Searching alignments... [201.77s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3465s] Building query seed array... [2.4587s] Computing hash join... [4.16133s] Building seed filter... [0.038059s] Searching alignments... [159.851s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5849s] Building query seed array... [2.57007s] Computing hash join... [4.0794s] Building seed filter... [0.047878s] Searching alignments... [128.346s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.73589s] Building query seed array... [2.04686s] Computing hash join... [4.12955s] Building seed filter... [0.051721s] Searching alignments... [109.266s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.62322s] Building query seed array... [1.84563s] Computing hash join... [3.90985s] Building seed filter... [0.039669s] Searching alignments... [130.683s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2328s] Building query seed array... [2.30662s] Computing hash join... [4.0088s] Building seed filter... [0.038606s] Searching alignments... [73.3579s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3715s] Building query seed array... [2.31591s] Computing hash join... [3.95217s] Building seed filter... [0.040172s] Searching alignments... [76.6189s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.71106s] Building query seed array... [1.90728s] Computing hash join... [3.90962s] Building seed filter... [0.041239s] Searching alignments... [79.3357s] Deallocating buffers... [0.124787s] Opening temporary output file... [0.000651s] Computing alignments... [385.52s] Deallocating reference... [0.08882s] Loading reference sequences... [477.045s] Masking reference... [58.2003s] Initializing temporary storage... [0.005274s] Building reference histograms... [12.0034s] Allocating buffers... [0.000202s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.05189s] Building query seed array... [2.15635s] Computing hash join... [4.09255s] Building seed filter... [0.04194s] Searching alignments... [241.95s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2434s] Building query seed array... [2.45932s] Computing hash join... [4.08908s] Building seed filter... [0.043814s] Searching alignments... [182.854s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5335s] Building query seed array... [2.55642s] Computing hash join... [4.11344s] Building seed filter... [0.043046s] Searching alignments... [136.217s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.67419s] Building query seed array... [2.08604s] Computing hash join... [4.10968s] Building seed filter... [0.042373s] Searching alignments... [139.263s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.62585s] Building query seed array... [1.88526s] Computing hash join... [3.94143s] Building seed filter... [0.045132s] Searching alignments... [149.984s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2114s] Building query seed array... [2.25187s] Computing hash join... [4.06067s] Building seed filter... [0.03927s] Searching alignments... [130.573s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4008s] Building query seed array... [2.32069s] Computing hash join... [3.96965s] Building seed filter... [0.039351s] Searching alignments... [90.0113s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.58938s] Building query seed array... [1.90946s] Computing hash join... [3.96376s] Building seed filter... [0.039702s] Searching alignments... [90.3656s] Deallocating buffers... [0.119649s] Opening temporary output file... [0.000574s] Computing alignments... [493.103s] Deallocating reference... [0.086882s] Loading reference sequences... [416.817s] Masking reference... [57.8156s] Initializing temporary storage... [0.004571s] Building reference histograms... [12.5685s] Allocating buffers... [0.000201s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.92474s] Building query seed array... [2.03341s] Computing hash join... [4.07355s] Building seed filter... [0.043588s] Searching alignments... [219.321s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3669s] Building query seed array... [2.47498s] Computing hash join... [4.11499s] Building seed filter... [0.039278s] Searching alignments... [143.285s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.7855s] Building query seed array... [2.61182s] Computing hash join... [4.10112s] Building seed filter... [0.041191s] Searching alignments... [101.741s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.65934s] Building query seed array... [2.03573s] Computing hash join... [4.18448s] Building seed filter... [0.042374s] Searching alignments... [105.728s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.64701s] Building query seed array... [1.88738s] Computing hash join... [4.04178s] Building seed filter... [0.042249s] Searching alignments... [112.284s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1815s] Building query seed array... [2.35138s] Computing hash join... [4.04544s] Building seed filter... [0.040913s] Searching alignments... [79.8472s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4547s] Building query seed array... [2.32779s] Computing hash join... [3.99958s] Building seed filter... [0.03647s] Searching alignments... [91.0492s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.62201s] Building query seed array... [1.92289s] Computing hash join... [3.9431s] Building seed filter... [0.037711s] Searching alignments... [88.5318s] Deallocating buffers... [0.127172s] Opening temporary output file... [0.001095s] Computing alignments... [354.939s] Deallocating reference... [0.083429s] Loading reference sequences... [423.319s] Masking reference... [57.8401s] Initializing temporary storage... [0.004078s] Building reference histograms... [12.0734s] Allocating buffers... [0.000185s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.8243s] Building query seed array... [2.03276s] Computing hash join... [4.12488s] Building seed filter... [0.046296s] Searching alignments... [169.336s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.7862s] Building query seed array... [2.57239s] Computing hash join... [4.1678s] Building seed filter... [0.044158s] Searching alignments... [137.223s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4583s] Building query seed array... [2.48995s] Computing hash join... [4.07089s] Building seed filter... [0.046435s] Searching alignments... [107.863s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.86196s] Building query seed array... [2.1341s] Computing hash join... [4.13038s] Building seed filter... [0.046044s] Searching alignments... [102.775s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.66808s] Building query seed array... [1.82789s] Computing hash join... [3.98199s] Building seed filter... [0.04045s] Searching alignments... [114.971s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.4356s] Building query seed array... [2.46636s] Computing hash join... [4.05613s] Building seed filter... [0.043325s] Searching alignments... [79.6068s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3269s] Building query seed array... [2.25474s] Computing hash join... [4.02919s] Building seed filter... [0.042014s] Searching alignments... [81.3899s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.10496s] Building query seed array... [1.949s] Computing hash join... [3.94871s] Building seed filter... [0.043656s] Searching alignments... [59.5406s] Deallocating buffers... [0.120059s] Opening temporary output file... [0.001072s] Computing alignments... [337.223s] Deallocating reference... [0.072511s] Loading reference sequences... [16.853s] Masking reference... [21.8776s] Initializing temporary storage... [0.003996s] Building reference histograms... [4.7339s] Allocating buffers... [0.000184s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.29783s] Building query seed array... [2.01292s] Computing hash join... [1.91264s] Building seed filter... [0.029466s] Searching alignments... [87.3902s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22864s] Building query seed array... [2.44066s] Computing hash join... [1.98476s] Building seed filter... [0.027134s] Searching alignments... [72.7338s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.32893s] Building query seed array... [2.50595s] Computing hash join... [1.94662s] Building seed filter... [0.029793s] Searching alignments... [51.5944s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26812s] Building query seed array... [2.24288s] Computing hash join... [2.00955s] Building seed filter... [0.037622s] Searching alignments... [64.7465s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25609s] Building query seed array... [1.82147s] Computing hash join... [1.83183s] Building seed filter... [0.024426s] Searching alignments... [58.7442s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.19028s] Building query seed array... [2.24848s] Computing hash join... [1.9406s] Building seed filter... [0.025546s] Searching alignments... [41.1756s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.30652s] Building query seed array... [2.28509s] Computing hash join... [1.85356s] Building seed filter... [0.023934s] Searching alignments... [34.334s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.38603s] Building query seed array... [1.82659s] Computing hash join... [1.85673s] Building seed filter... [0.024976s] Searching alignments... [50.0115s] Deallocating buffers... [0.052779s] Opening temporary output file... [0.023563s] Computing alignments... [176.538s] Deallocating reference... [0.039223s] Loading reference sequences... [0.087392s] Deallocating buffers... [0.021398s] Joining output blocks... [385.749s] Deallocating queries... [0.054876s] Loading query sequences... [3.6e-05s] Closing the input file... [5.8e-05s] Closing the output file... [0.357084s] Closing the database file... [3.5e-05s] Deallocating taxonomy... [1.4e-05s] Total time = 11183s Reported 1771828892 pairwise alignments, 1771897403 HSPs. 4000659 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.058266s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.115549s] Opening the output file... [0.00033s] Loading query sequences... [85.9614s] Masking queries... [72.1226s] Building query seed set... [0.375227s] Algorithm: Double-indexed Building query histograms... [3.21841s] Allocating buffers... [0.000453s] Loading reference sequences... [48.0388s] Masking reference... [59.0799s] Initializing temporary storage... [0.005169s] Building reference histograms... [12.178s] Allocating buffers... [0.000206s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.97945s] Building query seed array... [2.06006s] Computing hash join... [4.23316s] Building seed filter... [0.056927s] Searching alignments... [279.62s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.386s] Building query seed array... [2.38221s] Computing hash join... [4.16682s] Building seed filter... [0.0537s] Searching alignments... [256.196s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5693s] Building query seed array... [2.54686s] Computing hash join... [4.1802s] Building seed filter... [0.051035s] Searching alignments... [150.961s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.6334s] Building query seed array... [2.08624s] Computing hash join... [4.16988s] Building seed filter... [0.051276s] Searching alignments... [157.175s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.69279s] Building query seed array... [1.87816s] Computing hash join... [4.04619s] Building seed filter... [0.046017s] Searching alignments... [178.247s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1942s] Building query seed array... [2.18045s] Computing hash join... [4.08399s] Building seed filter... [0.04799s] Searching alignments... [116.27s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3976s] Building query seed array... [2.26472s] Computing hash join... [4.16897s] Building seed filter... [0.046315s] Searching alignments... [109.515s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.60355s] Building query seed array... [1.81616s] Computing hash join... [4.01076s] Building seed filter... [0.051563s] Searching alignments... [121.447s] Deallocating buffers... [0.118046s] Opening temporary output file... [0.000658s] Computing alignments... [533.585s] Deallocating reference... [0.094696s] Loading reference sequences... [53.2037s] Masking reference... [57.8903s] Initializing temporary storage... [0.004654s] Building reference histograms... [13.0863s] Allocating buffers... [0.000186s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.29649s] Building query seed array... [2.10281s] Computing hash join... [4.17792s] Building seed filter... [0.049207s] Searching alignments... [197.55s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3634s] Building query seed array... [2.47421s] Computing hash join... [4.2346s] Building seed filter... [0.049578s] Searching alignments... [158.309s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5559s] Building query seed array... [2.51801s] Computing hash join... [4.20775s] Building seed filter... [0.054867s] Searching alignments... [116.874s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.63929s] Building query seed array... [2.02768s] Computing hash join... [4.19904s] Building seed filter... [0.054471s] Searching alignments... [102.958s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.64959s] Building query seed array... [1.87961s] Computing hash join... [4.00358s] Building seed filter... [0.051819s] Searching alignments... [126.018s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.3775s] Building query seed array... [2.27116s] Computing hash join... [4.16415s] Building seed filter... [0.04772s] Searching alignments... [72.19s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3722s] Building query seed array... [2.2814s] Computing hash join... [4.04029s] Building seed filter... [0.048293s] Searching alignments... [74.2244s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.59412s] Building query seed array... [1.81377s] Computing hash join... [3.99068s] Building seed filter... [0.050054s] Searching alignments... [78.095s] Deallocating buffers... [0.124163s] Opening temporary output file... [0.001915s] Computing alignments... [370.124s] Deallocating reference... [0.072203s] Loading reference sequences... [441.078s] Masking reference... [57.9004s] Initializing temporary storage... [0.004062s] Building reference histograms... [12.3589s] Allocating buffers... [0.000188s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.10468s] Building query seed array... [2.01628s] Computing hash join... [4.12737s] Building seed filter... [0.054049s] Searching alignments... [239.643s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.589s] Building query seed array... [2.47421s] Computing hash join... [4.18316s] Building seed filter... [0.054088s] Searching alignments... [178.311s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.6589s] Building query seed array... [2.5387s] Computing hash join... [4.21488s] Building seed filter... [0.0493s] Searching alignments... [145.58s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.70819s] Building query seed array... [2.03945s] Computing hash join... [4.25626s] Building seed filter... [0.051982s] Searching alignments... [116.731s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.67736s] Building query seed array... [1.85413s] Computing hash join... [4.04879s] Building seed filter... [0.050836s] Searching alignments... [145.319s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1661s] Building query seed array... [2.26682s] Computing hash join... [4.12495s] Building seed filter... [0.050203s] Searching alignments... [120.14s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3779s] Building query seed array... [2.30483s] Computing hash join... [4.02783s] Building seed filter... [0.050398s] Searching alignments... [104.44s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.5756s] Building query seed array... [1.81404s] Computing hash join... [4.0168s] Building seed filter... [0.050728s] Searching alignments... [88.9755s] Deallocating buffers... [0.118572s] Opening temporary output file... [0.000649s] Computing alignments... [464.952s] Deallocating reference... [0.08763s] Loading reference sequences... [399.95s] Masking reference... [57.8271s] Initializing temporary storage... [0.004095s] Building reference histograms... [13.5223s] Allocating buffers... [0.000208s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.0812s] Building query seed array... [2.02312s] Computing hash join... [4.15847s] Building seed filter... [0.05091s] Searching alignments... [221.508s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3056s] Building query seed array... [2.48069s] Computing hash join... [4.20367s] Building seed filter... [0.05322s] Searching alignments... [141.44s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5495s] Building query seed array... [2.54563s] Computing hash join... [4.12854s] Building seed filter... [0.053308s] Searching alignments... [98.16s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.65203s] Building query seed array... [2.03586s] Computing hash join... [4.25864s] Building seed filter... [0.052537s] Searching alignments... [102.638s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.65427s] Building query seed array... [1.83304s] Computing hash join... [3.96914s] Building seed filter... [0.049612s] Searching alignments... [108.126s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2378s] Building query seed array... [2.27466s] Computing hash join... [4.1912s] Building seed filter... [0.052582s] Searching alignments... [77.5746s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4007s] Building query seed array... [2.21607s] Computing hash join... [4.014s] Building seed filter... [0.052712s] Searching alignments... [89.0634s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.6537s] Building query seed array... [1.83473s] Computing hash join... [3.98484s] Building seed filter... [0.052777s] Searching alignments... [82.5972s] Deallocating buffers... [0.11783s] Opening temporary output file... [0.00052s] Computing alignments... [367.83s] Deallocating reference... [0.074823s] Loading reference sequences... [559.947s] Masking reference... [58.0782s] Initializing temporary storage... [0.005925s] Building reference histograms... [12.8185s] Allocating buffers... [0.000187s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.02359s] Building query seed array... [2.14001s] Computing hash join... [4.23457s] Building seed filter... [0.054079s] Searching alignments... [164.999s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2531s] Building query seed array... [2.4179s] Computing hash join... [4.21394s] Building seed filter... [0.053776s] Searching alignments... [113.128s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.46s] Building query seed array... [2.48424s] Computing hash join... [4.19391s] Building seed filter... [0.053828s] Searching alignments... [97.6604s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.69089s] Building query seed array... [2.28948s] Computing hash join... [4.28425s] Building seed filter... [0.054914s] Searching alignments... [101.903s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.65837s] Building query seed array... [1.86791s] Computing hash join... [4.18071s] Building seed filter... [0.052472s] Searching alignments... [109.841s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.3757s] Building query seed array... [2.27847s] Computing hash join... [4.12567s] Building seed filter... [0.050531s] Searching alignments... [69.9905s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.4048s] Building query seed array... [2.23633s] Computing hash join... [4.19451s] Building seed filter... [0.053136s] Searching alignments... [77.0012s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.54924s] Building query seed array... [1.83542s] Computing hash join... [4.00148s] Building seed filter... [0.050679s] Searching alignments... [57.9593s] Deallocating buffers... [0.116043s] Opening temporary output file... [0.0011s] Computing alignments... [314.808s] Deallocating reference... [0.064441s] Loading reference sequences... [17.1925s] Masking reference... [21.8345s] Initializing temporary storage... [0.004107s] Building reference histograms... [4.89317s] Allocating buffers... [0.000204s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.33311s] Building query seed array... [2.01155s] Computing hash join... [1.92604s] Building seed filter... [0.03523s] Searching alignments... [84.6128s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.25411s] Building query seed array... [2.38412s] Computing hash join... [1.98474s] Building seed filter... [0.034853s] Searching alignments... [72.1327s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.40778s] Building query seed array... [2.45097s] Computing hash join... [2.01813s] Building seed filter... [0.02883s] Searching alignments... [51.8116s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.33049s] Building query seed array... [1.99552s] Computing hash join... [2.02619s] Building seed filter... [0.032204s] Searching alignments... [45.6578s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.34503s] Building query seed array... [1.92773s] Computing hash join... [1.88095s] Building seed filter... [0.029889s] Searching alignments... [54.6895s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.18083s] Building query seed array... [2.25132s] Computing hash join... [1.97753s] Building seed filter... [0.030422s] Searching alignments... [46.5734s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.34219s] Building query seed array... [2.21846s] Computing hash join... [1.88778s] Building seed filter... [0.028647s] Searching alignments... [35.0016s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22858s] Building query seed array... [1.8505s] Computing hash join... [1.85715s] Building seed filter... [0.029547s] Searching alignments... [31.9453s] Deallocating buffers... [0.041656s] Opening temporary output file... [0.001791s] Computing alignments... [163.696s] Deallocating reference... [0.033941s] Loading reference sequences... [0.058576s] Deallocating buffers... [0.02101s] Joining output blocks... [354.812s] Deallocating queries... [0.04349s] Loading query sequences... [3.2e-05s] Closing the input file... [5.3e-05s] Closing the output file... [0.319609s] Closing the database file... [3.5e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 10926s Reported 1718781343 pairwise alignments, 1718851783 HSPs. 3859050 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.056883s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.079413s] Opening the output file... [0.000323s] Loading query sequences... [145.98s] Masking queries... [120.457s] Building query seed set... [0.679583s] Algorithm: Double-indexed Building query histograms... [3.12122s] Allocating buffers... [0.000685s] Loading reference sequences... [47.1114s] Masking reference... [59.08s] Initializing temporary storage... [0.004559s] Building reference histograms... [12.0844s] Allocating buffers... [0.000221s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.89788s] Building query seed array... [2.15147s] Computing hash join... [3.98319s] Building seed filter... [0.070661s] Searching alignments... [167.373s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2997s] Building query seed array... [2.17055s] Computing hash join... [4.02878s] Building seed filter... [0.066718s] Searching alignments... [127.131s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4394s] Building query seed array... [2.27905s] Computing hash join... [3.98603s] Building seed filter... [0.068189s] Searching alignments... [104.636s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.63735s] Building query seed array... [1.97443s] Computing hash join... [3.98821s] Building seed filter... [0.067823s] Searching alignments... [109.147s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.67136s] Building query seed array... [1.78122s] Computing hash join... [4.00196s] Building seed filter... [0.062929s] Searching alignments... [94.5141s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1857s] Building query seed array... [1.97205s] Computing hash join... [3.86762s] Building seed filter... [0.061685s] Searching alignments... [92.0154s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4892s] Building query seed array... [2.09237s] Computing hash join... [3.98742s] Building seed filter... [0.065759s] Searching alignments... [96.7301s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.66597s] Building query seed array... [1.78056s] Computing hash join... [3.88733s] Building seed filter... [0.066752s] Searching alignments... [95.4365s] Deallocating buffers... [0.123058s] Opening temporary output file... [0.000695s] Computing alignments... [357.178s] Deallocating reference... [0.080372s] Loading reference sequences... [41.5959s] Masking reference... [57.6419s] Initializing temporary storage... [0.004544s] Building reference histograms... [12.6405s] Allocating buffers... [0.000193s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.3693s] Building query seed array... [2.11677s] Computing hash join... [4.14293s] Building seed filter... [0.076712s] Searching alignments... [124.352s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.4104s] Building query seed array... [2.26417s] Computing hash join... [3.99788s] Building seed filter... [0.069075s] Searching alignments... [98.5097s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4984s] Building query seed array... [2.33184s] Computing hash join... [3.99305s] Building seed filter... [0.07584s] Searching alignments... [79.1007s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.89556s] Building query seed array... [2.04021s] Computing hash join... [4.0409s] Building seed filter... [0.068506s] Searching alignments... [81.6156s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.64665s] Building query seed array... [1.78305s] Computing hash join... [3.90389s] Building seed filter... [0.062904s] Searching alignments... [67.8605s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1942s] Building query seed array... [2.13202s] Computing hash join... [3.88051s] Building seed filter... [0.064097s] Searching alignments... [64.0204s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3576s] Building query seed array... [2.15526s] Computing hash join... [3.90587s] Building seed filter... [0.059372s] Searching alignments... [72.5787s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.58577s] Building query seed array... [1.90587s] Computing hash join... [3.90234s] Building seed filter... [0.067566s] Searching alignments... [67.3859s] Deallocating buffers... [0.117457s] Opening temporary output file... [0.000577s] Computing alignments... [271.007s] Deallocating reference... [0.071457s] Loading reference sequences... [422.955s] Masking reference... [57.5709s] Initializing temporary storage... [0.004038s] Building reference histograms... [13.0612s] Allocating buffers... [0.000189s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.05076s] Building query seed array... [2.05032s] Computing hash join... [3.97504s] Building seed filter... [0.086318s] Searching alignments... [144.175s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2767s] Building query seed array... [2.28264s] Computing hash join... [3.96426s] Building seed filter... [0.067065s] Searching alignments... [113.369s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5375s] Building query seed array... [2.27099s] Computing hash join... [4.00458s] Building seed filter... [0.072258s] Searching alignments... [95.4248s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.61969s] Building query seed array... [2.08609s] Computing hash join... [3.96214s] Building seed filter... [0.067215s] Searching alignments... [98.6404s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.63111s] Building query seed array... [1.86615s] Computing hash join... [3.87857s] Building seed filter... [0.062597s] Searching alignments... [85.4563s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2414s] Building query seed array... [2.15626s] Computing hash join... [3.86663s] Building seed filter... [0.062428s] Searching alignments... [77.7161s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3896s] Building query seed array... [2.11584s] Computing hash join... [3.94488s] Building seed filter... [0.06555s] Searching alignments... [83.6246s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.57946s] Building query seed array... [1.79259s] Computing hash join... [3.90664s] Building seed filter... [0.069202s] Searching alignments... [81.591s] Deallocating buffers... [0.12015s] Opening temporary output file... [0.000717s] Computing alignments... [330.202s] Deallocating reference... [0.084728s] Loading reference sequences... [40.3572s] Masking reference... [57.6198s] Initializing temporary storage... [0.004197s] Building reference histograms... [12.34s] Allocating buffers... [0.000186s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.07607s] Building query seed array... [2.09256s] Computing hash join... [3.99575s] Building seed filter... [0.074788s] Searching alignments... [95.0148s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3407s] Building query seed array... [2.23295s] Computing hash join... [4.05683s] Building seed filter... [0.065606s] Searching alignments... [77.0679s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5063s] Building query seed array... [2.21204s] Computing hash join... [3.9719s] Building seed filter... [0.070811s] Searching alignments... [65.1862s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.64113s] Building query seed array... [2.03835s] Computing hash join... [4.01789s] Building seed filter... [0.06345s] Searching alignments... [60.9354s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.03943s] Building query seed array... [1.87493s] Computing hash join... [4.01707s] Building seed filter... [0.074546s] Searching alignments... [57.5798s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2329s] Building query seed array... [2.05714s] Computing hash join... [3.90104s] Building seed filter... [0.07177s] Searching alignments... [51.7387s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3673s] Building query seed array... [2.18971s] Computing hash join... [3.86869s] Building seed filter... [0.064628s] Searching alignments... [53.4728s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.61045s] Building query seed array... [1.77936s] Computing hash join... [3.90723s] Building seed filter... [0.069849s] Searching alignments... [49.7415s] Deallocating buffers... [0.129114s] Opening temporary output file... [0.001104s] Computing alignments... [232.415s] Deallocating reference... [0.065905s] Loading reference sequences... [377.936s] Masking reference... [58.0343s] Initializing temporary storage... [0.004162s] Building reference histograms... [12.0834s] Allocating buffers... [0.00019s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.95641s] Building query seed array... [2.04971s] Computing hash join... [4.06832s] Building seed filter... [0.081671s] Searching alignments... [97.7757s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.308s] Building query seed array... [2.15881s] Computing hash join... [4.08282s] Building seed filter... [0.069337s] Searching alignments... [77.2185s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4752s] Building query seed array... [2.18344s] Computing hash join... [4.00502s] Building seed filter... [0.073799s] Searching alignments... [66.2793s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.97951s] Building query seed array... [2.17787s] Computing hash join... [4.09274s] Building seed filter... [0.071686s] Searching alignments... [62.6945s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.72113s] Building query seed array... [1.89646s] Computing hash join... [3.87982s] Building seed filter... [0.063454s] Searching alignments... [54.3139s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.3231s] Building query seed array... [2.08569s] Computing hash join... [3.95476s] Building seed filter... [0.064444s] Searching alignments... [50.9983s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3708s] Building query seed array... [2.06222s] Computing hash join... [3.97124s] Building seed filter... [0.065736s] Searching alignments... [57.9313s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.6481s] Building query seed array... [1.83399s] Computing hash join... [3.85912s] Building seed filter... [0.067624s] Searching alignments... [50.8636s] Deallocating buffers... [0.10641s] Opening temporary output file... [0.022203s] Computing alignments... [226.373s] Deallocating reference... [0.065092s] Loading reference sequences... [16.6007s] Masking reference... [21.7595s] Initializing temporary storage... [0.004548s] Building reference histograms... [4.59344s] Allocating buffers... [0.000184s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.30581s] Building query seed array... [2.03079s] Computing hash join... [1.70704s] Building seed filter... [0.044578s] Searching alignments... [52.0949s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.29781s] Building query seed array... [2.15382s] Computing hash join... [1.78102s] Building seed filter... [0.038736s] Searching alignments... [42.3837s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.31553s] Building query seed array... [2.18646s] Computing hash join... [1.72512s] Building seed filter... [0.039193s] Searching alignments... [34.7272s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.2643s] Building query seed array... [1.9875s] Computing hash join... [1.75945s] Building seed filter... [0.040352s] Searching alignments... [35.7596s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.31712s] Building query seed array... [1.80773s] Computing hash join... [1.64981s] Building seed filter... [0.036861s] Searching alignments... [30.4598s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.17917s] Building query seed array... [2.03549s] Computing hash join... [1.67464s] Building seed filter... [0.035086s] Searching alignments... [29.1857s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.26542s] Building query seed array... [2.01375s] Computing hash join... [1.66794s] Building seed filter... [0.035536s] Searching alignments... [32.9499s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.21409s] Building query seed array... [1.85962s] Computing hash join... [1.70321s] Building seed filter... [0.036178s] Searching alignments... [28.1947s] Deallocating buffers... [0.045947s] Opening temporary output file... [0.001918s] Computing alignments... [123.32s] Deallocating reference... [0.028972s] Loading reference sequences... [0.013358s] Deallocating buffers... [0.008418s] Joining output blocks... [145.949s] Deallocating queries... [0.066919s] Loading query sequences... [2.9e-05s] Closing the input file... [5e-05s] Closing the output file... [0.320004s] Closing the database file... [3.5e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 7628.41s Reported 1774270874 pairwise alignments, 1774326328 HSPs. 2426353 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.067779s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.092607s] Opening the output file... [0.000344s] Loading query sequences... [147.077s] Masking queries... [152.448s] Building query seed set... [0.576293s] Algorithm: Double-indexed Building query histograms... [3.15333s] Allocating buffers... [0.000695s] Loading reference sequences... [53.9957s] Masking reference... [57.5399s] Initializing temporary storage... [0.005121s] Building reference histograms... [13.1143s] Allocating buffers... [0.000202s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.97864s] Building query seed array... [2.01245s] Computing hash join... [4.03623s] Building seed filter... [0.082084s] Searching alignments... [131.327s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.4292s] Building query seed array... [2.2355s] Computing hash join... [4.04701s] Building seed filter... [0.07157s] Searching alignments... [161.596s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.645s] Building query seed array... [2.22358s] Computing hash join... [4.06829s] Building seed filter... [0.078124s] Searching alignments... [95.6952s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.71475s] Building query seed array... [1.93548s] Computing hash join... [4.0487s] Building seed filter... [0.070282s] Searching alignments... [144.307s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.69748s] Building query seed array... [1.87039s] Computing hash join... [3.91714s] Building seed filter... [0.067763s] Searching alignments... [99.4777s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1688s] Building query seed array... [1.95807s] Computing hash join... [3.95505s] Building seed filter... [0.066626s] Searching alignments... [76.6484s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4097s] Building query seed array... [2.02706s] Computing hash join... [4.0208s] Building seed filter... [0.068366s] Searching alignments... [66.8913s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.60203s] Building query seed array... [1.87494s] Computing hash join... [3.9209s] Building seed filter... [0.06924s] Searching alignments... [119.286s] Deallocating buffers... [0.128692s] Opening temporary output file... [0.001123s] Computing alignments... [331.893s] Deallocating reference... [0.100297s] Loading reference sequences... [50.9263s] Masking reference... [57.9327s] Initializing temporary storage... [0.004592s] Building reference histograms... [12.4054s] Allocating buffers... [0.000185s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.99101s] Building query seed array... [2.05788s] Computing hash join... [4.10186s] Building seed filter... [0.083052s] Searching alignments... [98.8647s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.27s] Building query seed array... [2.24082s] Computing hash join... [4.12005s] Building seed filter... [0.073548s] Searching alignments... [106.784s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5077s] Building query seed array... [2.2885s] Computing hash join... [4.13383s] Building seed filter... [0.07982s] Searching alignments... [73.3638s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.85555s] Building query seed array... [2.06934s] Computing hash join... [4.09922s] Building seed filter... [0.074155s] Searching alignments... [103.026s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.66601s] Building query seed array... [1.76213s] Computing hash join... [3.92762s] Building seed filter... [0.06897s] Searching alignments... [69.5376s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1629s] Building query seed array... [2.04231s] Computing hash join... [3.91031s] Building seed filter... [0.071185s] Searching alignments... [56.7815s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.5196s] Building query seed array... [2.09093s] Computing hash join... [3.90677s] Building seed filter... [0.064529s] Searching alignments... [51.148s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.01066s] Building query seed array... [1.93807s] Computing hash join... [3.90956s] Building seed filter... [0.069182s] Searching alignments... [78.8257s] Deallocating buffers... [0.126269s] Opening temporary output file... [0.00104s] Computing alignments... [257.971s] Deallocating reference... [0.071419s] Loading reference sequences... [433.036s] Masking reference... [58.0263s] Initializing temporary storage... [0.00578s] Building reference histograms... [12.8722s] Allocating buffers... [0.00019s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.96524s] Building query seed array... [2.05974s] Computing hash join... [4.07303s] Building seed filter... [0.081165s] Searching alignments... [117.82s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3328s] Building query seed array... [2.21623s] Computing hash join... [4.04234s] Building seed filter... [0.081337s] Searching alignments... [143.924s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4652s] Building query seed array... [2.2455s] Computing hash join... [4.10034s] Building seed filter... [0.071003s] Searching alignments... [85.3252s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.65168s] Building query seed array... [1.99558s] Computing hash join... [4.05016s] Building seed filter... [0.070586s] Searching alignments... [118.628s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.70609s] Building query seed array... [1.86469s] Computing hash join... [3.98178s] Building seed filter... [0.068953s] Searching alignments... [119.559s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.3766s] Building query seed array... [2.15026s] Computing hash join... [3.98379s] Building seed filter... [0.067911s] Searching alignments... [68.2242s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4069s] Building query seed array... [2.07451s] Computing hash join... [3.95676s] Building seed filter... [0.072376s] Searching alignments... [81.3622s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.78464s] Building query seed array... [1.85314s] Computing hash join... [3.96595s] Building seed filter... [0.068415s] Searching alignments... [103.557s] Deallocating buffers... [0.113007s] Opening temporary output file... [0.001181s] Computing alignments... [308.379s] Deallocating reference... [0.072181s] Loading reference sequences... [392.726s] Masking reference... [57.7825s] Initializing temporary storage... [0.005706s] Building reference histograms... [12.5962s] Allocating buffers... [0.000189s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.95087s] Building query seed array... [2.04612s] Computing hash join... [4.11807s] Building seed filter... [0.081473s] Searching alignments... [81.1718s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.5838s] Building query seed array... [2.29698s] Computing hash join... [4.0391s] Building seed filter... [0.06964s] Searching alignments... [84.2817s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5773s] Building query seed array... [2.2717s] Computing hash join... [4.10687s] Building seed filter... [0.071264s] Searching alignments... [61.2253s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.64429s] Building query seed array... [2.01325s] Computing hash join... [4.05357s] Building seed filter... [0.069963s] Searching alignments... [73.4422s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.68768s] Building query seed array... [1.78828s] Computing hash join... [3.97837s] Building seed filter... [0.066833s] Searching alignments... [54.7878s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2035s] Building query seed array... [2.02923s] Computing hash join... [4.0496s] Building seed filter... [0.070301s] Searching alignments... [50.0668s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3249s] Building query seed array... [2.11251s] Computing hash join... [3.97775s] Building seed filter... [0.069784s] Searching alignments... [41.9001s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.54559s] Building query seed array... [1.81848s] Computing hash join... [3.92631s] Building seed filter... [0.068144s] Searching alignments... [49.7718s] Deallocating buffers... [0.124003s] Opening temporary output file... [0.000654s] Computing alignments... [216.419s] Deallocating reference... [0.082133s] Loading reference sequences... [38.2554s] Masking reference... [57.7436s] Initializing temporary storage... [0.004045s] Building reference histograms... [12.9157s] Allocating buffers... [0.000215s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.96909s] Building query seed array... [1.99602s] Computing hash join... [4.07104s] Building seed filter... [0.076137s] Searching alignments... [79.7378s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2344s] Building query seed array... [2.2238s] Computing hash join... [4.1029s] Building seed filter... [0.073119s] Searching alignments... [96.9909s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.5798s] Building query seed array... [2.16636s] Computing hash join... [4.03473s] Building seed filter... [0.073864s] Searching alignments... [62.7184s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.65249s] Building query seed array... [2.01014s] Computing hash join... [4.02701s] Building seed filter... [0.069567s] Searching alignments... [69.9263s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.66918s] Building query seed array... [1.8641s] Computing hash join... [3.92016s] Building seed filter... [0.067421s] Searching alignments... [59.031s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.088s] Building query seed array... [2.04591s] Computing hash join... [3.97057s] Building seed filter... [0.069149s] Searching alignments... [46.6611s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3422s] Building query seed array... [2.00184s] Computing hash join... [3.96407s] Building seed filter... [0.076217s] Searching alignments... [43.5133s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.56122s] Building query seed array... [1.79165s] Computing hash join... [3.88584s] Building seed filter... [0.07131s] Searching alignments... [59.2678s] Deallocating buffers... [0.111242s] Opening temporary output file... [0.001069s] Computing alignments... [214.195s] Deallocating reference... [0.080113s] Loading reference sequences... [165.91s] Masking reference... [21.4651s] Initializing temporary storage... [0.003958s] Building reference histograms... [4.91642s] Allocating buffers... [0.000205s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.39402s] Building query seed array... [2.06094s] Computing hash join... [1.73125s] Building seed filter... [0.041514s] Searching alignments... [39.7771s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.28129s] Building query seed array... [2.13961s] Computing hash join... [1.72099s] Building seed filter... [0.038981s] Searching alignments... [50.1904s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.36241s] Building query seed array... [2.14932s] Computing hash join... [1.72682s] Building seed filter... [0.040635s] Searching alignments... [28.6262s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26881s] Building query seed array... [1.92395s] Computing hash join... [1.78985s] Building seed filter... [0.04253s] Searching alignments... [42.3323s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26277s] Building query seed array... [1.82613s] Computing hash join... [1.71519s] Building seed filter... [0.038917s] Searching alignments... [29.9691s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.21693s] Building query seed array... [2.01488s] Computing hash join... [1.69277s] Building seed filter... [0.037169s] Searching alignments... [22.8794s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.42912s] Building query seed array... [2.00817s] Computing hash join... [1.66625s] Building seed filter... [0.037346s] Searching alignments... [35.1044s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23169s] Building query seed array... [2.42286s] Computing hash join... [1.70421s] Building seed filter... [0.039857s] Searching alignments... [36.1393s] Deallocating buffers... [0.046628s] Opening temporary output file... [0.012236s] Computing alignments... [118.48s] Deallocating reference... [0.028224s] Loading reference sequences... [5.2e-05s] Deallocating buffers... [0.00754s] Joining output blocks... [140.763s] Deallocating queries... [0.057004s] Loading query sequences... [2.4e-05s] Closing the input file... [5.2e-05s] Closing the output file... [0.243117s] Closing the database file... [2.9e-05s] Deallocating taxonomy... [1e-05s] Total time = 7788.36s Reported 1654898723 pairwise alignments, 1654952173 HSPs. 2386160 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.052629s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.132015s] Opening the output file... [0.0003s] Loading query sequences... [56.8733s] Masking queries... [36.316s] Building query seed set... [0.290976s] Algorithm: Double-indexed Building query histograms... [2.2152s] Allocating buffers... [0.000708s] Loading reference sequences... [46.3248s] Masking reference... [58.9698s] Initializing temporary storage... [0.005192s] Building reference histograms... [12.816s] Allocating buffers... [0.000179s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.97677s] Building query seed array... [1.4247s] Computing hash join... [3.98559s] Building seed filter... [0.055629s] Searching alignments... [220.089s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2526s] Building query seed array... [1.65691s] Computing hash join... [3.98309s] Building seed filter... [0.05069s] Searching alignments... [131.016s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5357s] Building query seed array... [1.69902s] Computing hash join... [4.09242s] Building seed filter... [0.05581s] Searching alignments... [120.217s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.67487s] Building query seed array... [1.38881s] Computing hash join... [3.98376s] Building seed filter... [0.05321s] Searching alignments... [113.844s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.68088s] Building query seed array... [1.27669s] Computing hash join... [3.86356s] Building seed filter... [0.050512s] Searching alignments... [102.977s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.3669s] Building query seed array... [1.63383s] Computing hash join... [3.86236s] Building seed filter... [0.050302s] Searching alignments... [103.222s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3969s] Building query seed array... [1.60374s] Computing hash join... [3.90139s] Building seed filter... [0.048806s] Searching alignments... [101.28s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.58659s] Building query seed array... [1.27265s] Computing hash join... [3.8472s] Building seed filter... [0.049452s] Searching alignments... [87.9303s] Deallocating buffers... [0.121255s] Opening temporary output file... [0.001138s] Computing alignments... [387.139s] Deallocating reference... [0.077445s] Loading reference sequences... [424.899s] Masking reference... [57.5796s] Initializing temporary storage... [0.004063s] Building reference histograms... [13.1088s] Allocating buffers... [0.000188s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.40027s] Building query seed array... [1.51014s] Computing hash join... [3.96179s] Building seed filter... [0.050162s] Searching alignments... [164.587s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.7782s] Building query seed array... [1.81322s] Computing hash join... [4.02219s] Building seed filter... [0.047007s] Searching alignments... [98.1609s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4634s] Building query seed array... [1.88696s] Computing hash join... [3.93877s] Building seed filter... [0.048753s] Searching alignments... [90.4538s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.71432s] Building query seed array... [1.48904s] Computing hash join... [4.02085s] Building seed filter... [0.048946s] Searching alignments... [87.3082s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.6407s] Building query seed array... [1.38663s] Computing hash join... [3.9226s] Building seed filter... [0.045869s] Searching alignments... [103.128s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2131s] Building query seed array... [1.60791s] Computing hash join... [3.93712s] Building seed filter... [0.047971s] Searching alignments... [74.2752s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.7636s] Building query seed array... [1.68116s] Computing hash join... [3.89472s] Building seed filter... [0.043677s] Searching alignments... [76.6271s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.03308s] Building query seed array... [1.42032s] Computing hash join... [3.87329s] Building seed filter... [0.050748s] Searching alignments... [66.7624s] Deallocating buffers... [0.119917s] Opening temporary output file... [0.001187s] Computing alignments... [297.09s] Deallocating reference... [0.072693s] Loading reference sequences... [416.537s] Masking reference... [57.5268s] Initializing temporary storage... [0.003892s] Building reference histograms... [11.8288s] Allocating buffers... [0.000186s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.81506s] Building query seed array... [1.41719s] Computing hash join... [3.94665s] Building seed filter... [0.055421s] Searching alignments... [197.809s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2899s] Building query seed array... [1.74683s] Computing hash join... [4.02063s] Building seed filter... [0.047353s] Searching alignments... [115.154s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4987s] Building query seed array... [1.81562s] Computing hash join... [3.9465s] Building seed filter... [0.049789s] Searching alignments... [106.245s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.62253s] Building query seed array... [1.39782s] Computing hash join... [3.94722s] Building seed filter... [0.049966s] Searching alignments... [98.714s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.75443s] Building query seed array... [1.35603s] Computing hash join... [3.81034s] Building seed filter... [0.049879s] Searching alignments... [112.732s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1773s] Building query seed array... [1.6104s] Computing hash join... [3.88368s] Building seed filter... [0.044899s] Searching alignments... [87.4878s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4667s] Building query seed array... [1.65047s] Computing hash join... [3.95296s] Building seed filter... [0.05089s] Searching alignments... [89.2448s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.54085s] Building query seed array... [1.26929s] Computing hash join... [3.89024s] Building seed filter... [0.046693s] Searching alignments... [76.117s] Deallocating buffers... [0.117902s] Opening temporary output file... [0.001064s] Computing alignments... [352.964s] Deallocating reference... [0.070366s] Loading reference sequences... [41.2376s] Masking reference... [59.2031s] Initializing temporary storage... [0.004764s] Building reference histograms... [13.1873s] Allocating buffers... [0.000216s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.1091s] Building query seed array... [1.45338s] Computing hash join... [4.07668s] Building seed filter... [0.058179s] Searching alignments... [128.157s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3139s] Building query seed array... [1.74828s] Computing hash join... [3.97021s] Building seed filter... [0.053465s] Searching alignments... [77.347s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5779s] Building query seed array... [1.79242s] Computing hash join... [4.13755s] Building seed filter... [0.058473s] Searching alignments... [71.776s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.66505s] Building query seed array... [1.51126s] Computing hash join... [3.94665s] Building seed filter... [0.047526s] Searching alignments... [66.7413s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.65485s] Building query seed array... [1.34771s] Computing hash join... [3.81164s] Building seed filter... [0.046408s] Searching alignments... [83.0343s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2216s] Building query seed array... [1.63415s] Computing hash join... [3.92153s] Building seed filter... [0.052525s] Searching alignments... [55.8801s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3836s] Building query seed array... [1.60649s] Computing hash join... [3.89845s] Building seed filter... [0.044794s] Searching alignments... [58.1674s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.59234s] Building query seed array... [1.37877s] Computing hash join... [3.88436s] Building seed filter... [0.052323s] Searching alignments... [51.1889s] Deallocating buffers... [0.118876s] Opening temporary output file... [0.000946s] Computing alignments... [239.639s] Deallocating reference... [0.065667s] Loading reference sequences... [41.6692s] Masking reference... [59.3893s] Initializing temporary storage... [0.004683s] Building reference histograms... [11.854s] Allocating buffers... [0.000204s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.92983s] Building query seed array... [1.48346s] Computing hash join... [3.9812s] Building seed filter... [0.058266s] Searching alignments... [132.129s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.7234s] Building query seed array... [1.78966s] Computing hash join... [3.96104s] Building seed filter... [0.051294s] Searching alignments... [79.1385s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4257s] Building query seed array... [1.74103s] Computing hash join... [3.93959s] Building seed filter... [0.053719s] Searching alignments... [74.8695s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.67163s] Building query seed array... [1.3906s] Computing hash join... [3.99003s] Building seed filter... [0.05182s] Searching alignments... [68.4311s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.00897s] Building query seed array... [1.4055s] Computing hash join... [3.82974s] Building seed filter... [0.046302s] Searching alignments... [78.0147s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.3599s] Building query seed array... [1.62375s] Computing hash join... [3.9137s] Building seed filter... [0.049519s] Searching alignments... [59.0345s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.6943s] Building query seed array... [1.64618s] Computing hash join... [3.88632s] Building seed filter... [0.055289s] Searching alignments... [59.4417s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.66398s] Building query seed array... [1.27667s] Computing hash join... [3.861s] Building seed filter... [0.050533s] Searching alignments... [51.3671s] Deallocating buffers... [0.122392s] Opening temporary output file... [0.015231s] Computing alignments... [236.649s] Deallocating reference... [0.063996s] Loading reference sequences... [16.8987s] Masking reference... [21.7928s] Initializing temporary storage... [0.004625s] Building reference histograms... [4.9224s] Allocating buffers... [0.000207s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.37906s] Building query seed array... [1.4239s] Computing hash join... [1.76328s] Building seed filter... [0.031595s] Searching alignments... [69.3632s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.39204s] Building query seed array... [1.70451s] Computing hash join... [1.79318s] Building seed filter... [0.032616s] Searching alignments... [39.3221s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30091s] Building query seed array... [1.6966s] Computing hash join... [1.7735s] Building seed filter... [0.029973s] Searching alignments... [37.5321s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.44255s] Building query seed array... [1.4225s] Computing hash join... [1.78366s] Building seed filter... [0.031158s] Searching alignments... [34.8977s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.32021s] Building query seed array... [1.28248s] Computing hash join... [1.67898s] Building seed filter... [0.02988s] Searching alignments... [33.7819s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.23272s] Building query seed array... [1.57539s] Computing hash join... [1.74098s] Building seed filter... [0.030815s] Searching alignments... [31.3462s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27038s] Building query seed array... [1.58142s] Computing hash join... [1.71572s] Building seed filter... [0.029162s] Searching alignments... [31.4591s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23908s] Building query seed array... [1.31934s] Computing hash join... [1.68597s] Building seed filter... [0.031221s] Searching alignments... [27.7379s] Deallocating buffers... [0.047449s] Opening temporary output file... [0.014371s] Computing alignments... [116.949s] Deallocating reference... [0.028448s] Loading reference sequences... [0.055726s] Deallocating buffers... [0.014198s] Joining output blocks... [162.293s] Deallocating queries... [0.026271s] Loading query sequences... [2.3e-05s] Closing the input file... [3.9e-05s] Closing the output file... [0.244015s] Closing the database file... [2.8e-05s] Deallocating taxonomy... [1e-05s] Total time = 8068.55s Reported 1907504842 pairwise alignments, 1907583380 HSPs. 3032356 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.075656s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.070756s] Opening the output file... [0.000303s] Loading query sequences... [57.9565s] Masking queries... [32.829s] Building query seed set... [0.250317s] Algorithm: Double-indexed Building query histograms... [2.20669s] Allocating buffers... [0.000705s] Loading reference sequences... [421.848s] Masking reference... [59.2834s] Initializing temporary storage... [0.003882s] Building reference histograms... [12.9745s] Allocating buffers... [0.000194s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.02552s] Building query seed array... [1.47158s] Computing hash join... [4.05493s] Building seed filter... [0.061245s] Searching alignments... [219.366s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3549s] Building query seed array... [1.71633s] Computing hash join... [4.08011s] Building seed filter... [0.055116s] Searching alignments... [127.444s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4838s] Building query seed array... [1.73702s] Computing hash join... [4.08042s] Building seed filter... [0.06128s] Searching alignments... [115.698s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.69927s] Building query seed array... [1.41275s] Computing hash join... [4.09546s] Building seed filter... [0.056991s] Searching alignments... [111.17s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.68506s] Building query seed array... [1.28235s] Computing hash join... [3.95333s] Building seed filter... [0.060982s] Searching alignments... [98.5772s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1589s] Building query seed array... [1.5586s] Computing hash join... [4.01302s] Building seed filter... [0.055439s] Searching alignments... [101.512s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4518s] Building query seed array... [1.63998s] Computing hash join... [3.91365s] Building seed filter... [0.056968s] Searching alignments... [99.0086s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.56587s] Building query seed array... [1.3537s] Computing hash join... [3.92577s] Building seed filter... [0.060756s] Searching alignments... [86.6938s] Deallocating buffers... [0.122463s] Opening temporary output file... [0.000748s] Computing alignments... [365.865s] Deallocating reference... [0.085738s] Loading reference sequences... [46.6234s] Masking reference... [57.6615s] Initializing temporary storage... [0.004057s] Building reference histograms... [12.8176s] Allocating buffers... [0.000188s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.89262s] Building query seed array... [1.40988s] Computing hash join... [4.02623s] Building seed filter... [0.06014s] Searching alignments... [163.31s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.499s] Building query seed array... [1.7985s] Computing hash join... [4.0197s] Building seed filter... [0.058492s] Searching alignments... [95.5808s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4836s] Building query seed array... [1.7739s] Computing hash join... [4.02076s] Building seed filter... [0.059432s] Searching alignments... [88.5489s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.66616s] Building query seed array... [1.38907s] Computing hash join... [4.03436s] Building seed filter... [0.060065s] Searching alignments... [84.8074s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.7163s] Building query seed array... [1.38044s] Computing hash join... [3.92093s] Building seed filter... [0.054025s] Searching alignments... [101.928s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2147s] Building query seed array... [1.53092s] Computing hash join... [4.01751s] Building seed filter... [0.058395s] Searching alignments... [72.8785s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4s] Building query seed array... [1.62654s] Computing hash join... [3.95283s] Building seed filter... [0.05556s] Searching alignments... [74.9586s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.52462s] Building query seed array... [1.27324s] Computing hash join... [3.97928s] Building seed filter... [0.059208s] Searching alignments... [65.8227s] Deallocating buffers... [0.127788s] Opening temporary output file... [0.001206s] Computing alignments... [286.147s] Deallocating reference... [0.089584s] Loading reference sequences... [377.545s] Masking reference... [57.8375s] Initializing temporary storage... [0.005166s] Building reference histograms... [12.4788s] Allocating buffers... [0.000186s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.31237s] Building query seed array... [1.49634s] Computing hash join... [4.01699s] Building seed filter... [0.057575s] Searching alignments... [192.465s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.4876s] Building query seed array... [1.75978s] Computing hash join... [4.03614s] Building seed filter... [0.0542s] Searching alignments... [112.366s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5263s] Building query seed array... [1.80291s] Computing hash join... [4.04731s] Building seed filter... [0.058416s] Searching alignments... [103.989s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.64926s] Building query seed array... [1.45069s] Computing hash join... [4.0372s] Building seed filter... [0.057827s] Searching alignments... [96.9723s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.68488s] Building query seed array... [1.31658s] Computing hash join... [3.89778s] Building seed filter... [0.057384s] Searching alignments... [96.6167s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1253s] Building query seed array... [1.61723s] Computing hash join... [3.96614s] Building seed filter... [0.054001s] Searching alignments... [86.0742s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.7939s] Building query seed array... [1.69385s] Computing hash join... [3.96888s] Building seed filter... [0.053988s] Searching alignments... [86.4533s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.58487s] Building query seed array... [1.3684s] Computing hash join... [3.89268s] Building seed filter... [0.056772s] Searching alignments... [74.6843s] Deallocating buffers... [0.112442s] Opening temporary output file... [0.000694s] Computing alignments... [342.218s] Deallocating reference... [0.082407s] Loading reference sequences... [40.7964s] Masking reference... [59.0884s] Initializing temporary storage... [0.004628s] Building reference histograms... [12.7651s] Allocating buffers... [0.000185s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.89744s] Building query seed array... [1.47226s] Computing hash join... [4.03983s] Building seed filter... [0.06s] Searching alignments... [126.159s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3228s] Building query seed array... [1.76245s] Computing hash join... [4.00476s] Building seed filter... [0.056898s] Searching alignments... [76.3382s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5208s] Building query seed array... [1.79496s] Computing hash join... [4.00655s] Building seed filter... [0.058348s] Searching alignments... [69.9097s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.68798s] Building query seed array... [1.38847s] Computing hash join... [4.02038s] Building seed filter... [0.058782s] Searching alignments... [65.679s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.68368s] Building query seed array... [1.525s] Computing hash join... [3.91721s] Building seed filter... [0.05447s] Searching alignments... [81.8056s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2959s] Building query seed array... [1.62515s] Computing hash join... [3.98299s] Building seed filter... [0.056708s] Searching alignments... [54.5308s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.678s] Building query seed array... [1.6589s] Computing hash join... [3.92773s] Building seed filter... [0.055056s] Searching alignments... [57.1638s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.76082s] Building query seed array... [1.39194s] Computing hash join... [3.87049s] Building seed filter... [0.05436s] Searching alignments... [49.4391s] Deallocating buffers... [0.124945s] Opening temporary output file... [0.001109s] Computing alignments... [228.843s] Deallocating reference... [0.075922s] Loading reference sequences... [334.507s] Masking reference... [58.5768s] Initializing temporary storage... [0.004001s] Building reference histograms... [13.0801s] Allocating buffers... [0.000191s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.00952s] Building query seed array... [1.50816s] Computing hash join... [4.0868s] Building seed filter... [0.063796s] Searching alignments... [128.956s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2879s] Building query seed array... [1.7001s] Computing hash join... [4.04387s] Building seed filter... [0.055707s] Searching alignments... [78.5515s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4204s] Building query seed array... [1.72862s] Computing hash join... [4.01314s] Building seed filter... [0.061843s] Searching alignments... [73.1348s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.66237s] Building query seed array... [1.38784s] Computing hash join... [4.03064s] Building seed filter... [0.059201s] Searching alignments... [66.2394s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.67532s] Building query seed array... [1.297s] Computing hash join... [3.89338s] Building seed filter... [0.055452s] Searching alignments... [76.3678s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.5922s] Building query seed array... [1.6126s] Computing hash join... [3.96132s] Building seed filter... [0.057941s] Searching alignments... [56.4325s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3966s] Building query seed array... [1.55099s] Computing hash join... [3.99567s] Building seed filter... [0.059629s] Searching alignments... [59.0776s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.63965s] Building query seed array... [1.37335s] Computing hash join... [3.93179s] Building seed filter... [0.058603s] Searching alignments... [51.5211s] Deallocating buffers... [0.123145s] Opening temporary output file... [0.000978s] Computing alignments... [228.56s] Deallocating reference... [0.06375s] Loading reference sequences... [16.9786s] Masking reference... [21.6724s] Initializing temporary storage... [0.004522s] Building reference histograms... [4.83549s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.61961s] Building query seed array... [1.48994s] Computing hash join... [1.77087s] Building seed filter... [0.039733s] Searching alignments... [68.6037s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.29835s] Building query seed array... [1.70289s] Computing hash join... [1.77874s] Building seed filter... [0.03255s] Searching alignments... [38.6262s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.32678s] Building query seed array... [1.70172s] Computing hash join... [1.81447s] Building seed filter... [0.037664s] Searching alignments... [37.5667s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25618s] Building query seed array... [1.58149s] Computing hash join... [1.81271s] Building seed filter... [0.034448s] Searching alignments... [34.4557s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.30074s] Building query seed array... [1.29088s] Computing hash join... [1.70122s] Building seed filter... [0.030314s] Searching alignments... [30.6411s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.25569s] Building query seed array... [1.63607s] Computing hash join... [1.74881s] Building seed filter... [0.035951s] Searching alignments... [30.6188s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.35116s] Building query seed array... [1.55798s] Computing hash join... [1.71928s] Building seed filter... [0.032809s] Searching alignments... [30.6592s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22722s] Building query seed array... [1.30796s] Computing hash join... [1.73621s] Building seed filter... [0.037907s] Searching alignments... [27.0949s] Deallocating buffers... [0.050719s] Opening temporary output file... [0.002237s] Computing alignments... [113.236s] Deallocating reference... [0.02869s] Loading reference sequences... [4.6e-05s] Deallocating buffers... [0.010171s] Joining output blocks... [159.883s] Deallocating queries... [0.024945s] Loading query sequences... [2.9e-05s] Closing the input file... [4.4e-05s] Closing the output file... [0.246122s] Closing the database file... [3.4e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 8152.29s Reported 1880039414 pairwise alignments, 1880125259 HSPs. 2952147 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.052661s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.055764s] Opening the output file... [0.000325s] Loading query sequences... [74.1969s] Masking queries... [54.3313s] Building query seed set... [0.327606s] Algorithm: Double-indexed Building query histograms... [1.94909s] Allocating buffers... [0.000705s] Loading reference sequences... [45.3657s] Masking reference... [59.0262s] Initializing temporary storage... [0.005222s] Building reference histograms... [12.0974s] Allocating buffers... [0.000194s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.8875s] Building query seed array... [1.26642s] Computing hash join... [4.07951s] Building seed filter... [0.088434s] Searching alignments... [79.5538s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3454s] Building query seed array... [1.49336s] Computing hash join... [4.14191s] Building seed filter... [0.082082s] Searching alignments... [65.7595s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4396s] Building query seed array... [1.55507s] Computing hash join... [4.04948s] Building seed filter... [0.085789s] Searching alignments... [38.1055s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.66455s] Building query seed array... [1.25621s] Computing hash join... [4.0965s] Building seed filter... [0.082879s] Searching alignments... [37.2016s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.67165s] Building query seed array... [1.10413s] Computing hash join... [3.95188s] Building seed filter... [0.074814s] Searching alignments... [39.7527s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1324s] Building query seed array... [1.27557s] Computing hash join... [3.974s] Building seed filter... [0.078265s] Searching alignments... [28.9033s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4158s] Building query seed array... [1.2293s] Computing hash join... [3.92267s] Building seed filter... [0.078779s] Searching alignments... [27.5567s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.55346s] Building query seed array... [1.05096s] Computing hash join... [3.94941s] Building seed filter... [0.086299s] Searching alignments... [27.0404s] Deallocating buffers... [0.112036s] Opening temporary output file... [0.000571s] Computing alignments... [107.044s] Deallocating reference... [0.079226s] Loading reference sequences... [381.562s] Masking reference... [57.614s] Initializing temporary storage... [0.004099s] Building reference histograms... [12.283s] Allocating buffers... [0.000212s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.11034s] Building query seed array... [1.34418s] Computing hash join... [4.08364s] Building seed filter... [0.095624s] Searching alignments... [57.5852s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.4266s] Building query seed array... [1.51143s] Computing hash join... [4.06455s] Building seed filter... [0.084778s] Searching alignments... [39.2651s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5758s] Building query seed array... [1.50445s] Computing hash join... [4.09699s] Building seed filter... [0.09523s] Searching alignments... [29.5205s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.63939s] Building query seed array... [1.25739s] Computing hash join... [4.08007s] Building seed filter... [0.089683s] Searching alignments... [28.0485s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.7334s] Building query seed array... [1.0857s] Computing hash join... [3.95056s] Building seed filter... [0.075875s] Searching alignments... [28.3637s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.3138s] Building query seed array... [1.32509s] Computing hash join... [3.92444s] Building seed filter... [0.077731s] Searching alignments... [18.7001s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3804s] Building query seed array... [1.3256s] Computing hash join... [3.98558s] Building seed filter... [0.083306s] Searching alignments... [21.2289s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.59825s] Building query seed array... [1.05154s] Computing hash join... [3.99534s] Building seed filter... [0.076656s] Searching alignments... [18.6991s] Deallocating buffers... [0.113033s] Opening temporary output file... [0.000521s] Computing alignments... [77.2752s] Deallocating reference... [0.070472s] Loading reference sequences... [383.684s] Masking reference... [57.8994s] Initializing temporary storage... [0.018331s] Building reference histograms... [11.9867s] Allocating buffers... [0.000205s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.90288s] Building query seed array... [1.24408s] Computing hash join... [4.07096s] Building seed filter... [0.086456s] Searching alignments... [66.8479s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.341s] Building query seed array... [1.50196s] Computing hash join... [4.13913s] Building seed filter... [0.080729s] Searching alignments... [45.2958s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5575s] Building query seed array... [1.49131s] Computing hash join... [4.10539s] Building seed filter... [0.08778s] Searching alignments... [32.2965s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.75485s] Building query seed array... [1.31106s] Computing hash join... [4.1598s] Building seed filter... [0.081705s] Searching alignments... [30.228s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.63812s] Building query seed array... [1.1131s] Computing hash join... [3.91541s] Building seed filter... [0.073404s] Searching alignments... [32.9109s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.184s] Building query seed array... [1.34847s] Computing hash join... [3.95347s] Building seed filter... [0.073306s] Searching alignments... [22.0314s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.6777s] Building query seed array... [1.30849s] Computing hash join... [3.92849s] Building seed filter... [0.076396s] Searching alignments... [24.5279s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.61428s] Building query seed array... [1.059s] Computing hash join... [3.95243s] Building seed filter... [0.087201s] Searching alignments... [20.9614s] Deallocating buffers... [0.107007s] Opening temporary output file... [0.001403s] Computing alignments... [93.2126s] Deallocating reference... [0.070553s] Loading reference sequences... [42.2859s] Masking reference... [58.4908s] Initializing temporary storage... [0.005138s] Building reference histograms... [12.4858s] Allocating buffers... [0.000189s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.07006s] Building query seed array... [1.26287s] Computing hash join... [4.15537s] Building seed filter... [0.086664s] Searching alignments... [50.9493s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.328s] Building query seed array... [1.46492s] Computing hash join... [4.14289s] Building seed filter... [0.082175s] Searching alignments... [33.4106s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5736s] Building query seed array... [1.50275s] Computing hash join... [4.20497s] Building seed filter... [0.086868s] Searching alignments... [25.8216s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.01633s] Building query seed array... [1.39228s] Computing hash join... [4.09576s] Building seed filter... [0.087401s] Searching alignments... [27.4091s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.71181s] Building query seed array... [1.11428s] Computing hash join... [4.00658s] Building seed filter... [0.084985s] Searching alignments... [25.3361s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1894s] Building query seed array... [1.32223s] Computing hash join... [3.93698s] Building seed filter... [0.08469s] Searching alignments... [18.1286s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3515s] Building query seed array... [1.3405s] Computing hash join... [3.94128s] Building seed filter... [0.080083s] Searching alignments... [21.366s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.62409s] Building query seed array... [1.05471s] Computing hash join... [3.98384s] Building seed filter... [0.080202s] Searching alignments... [16.5296s] Deallocating buffers... [0.108376s] Opening temporary output file... [0.001013s] Computing alignments... [73.3085s] Deallocating reference... [0.082425s] Loading reference sequences... [55.9174s] Masking reference... [58.3602s] Initializing temporary storage... [0.005317s] Building reference histograms... [12.6623s] Allocating buffers... [0.000188s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.02671s] Building query seed array... [1.25723s] Computing hash join... [4.13939s] Building seed filter... [0.091269s] Searching alignments... [47.9804s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.1753s] Building query seed array... [1.44211s] Computing hash join... [4.16012s] Building seed filter... [0.090072s] Searching alignments... [34.8505s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.487s] Building query seed array... [1.4626s] Computing hash join... [4.11949s] Building seed filter... [0.089948s] Searching alignments... [25.3152s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.72628s] Building query seed array... [1.20721s] Computing hash join... [4.13234s] Building seed filter... [0.095307s] Searching alignments... [23.9649s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.61252s] Building query seed array... [1.08549s] Computing hash join... [3.93081s] Building seed filter... [0.078344s] Searching alignments... [25.5455s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.6101s] Building query seed array... [1.34163s] Computing hash join... [3.99186s] Building seed filter... [0.074554s] Searching alignments... [17.6738s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.4034s] Building query seed array... [1.26286s] Computing hash join... [3.9504s] Building seed filter... [0.082252s] Searching alignments... [19.647s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.61407s] Building query seed array... [1.05291s] Computing hash join... [3.96096s] Building seed filter... [0.076671s] Searching alignments... [17.0239s] Deallocating buffers... [0.104231s] Opening temporary output file... [0.01639s] Computing alignments... [71.5992s] Deallocating reference... [0.081093s] Loading reference sequences... [146.531s] Masking reference... [21.6127s] Initializing temporary storage... [0.004049s] Building reference histograms... [4.55888s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.25822s] Building query seed array... [1.25293s] Computing hash join... [1.70421s] Building seed filter... [0.050443s] Searching alignments... [24.7515s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22019s] Building query seed array... [1.44043s] Computing hash join... [1.74292s] Building seed filter... [0.047327s] Searching alignments... [17.9291s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.40264s] Building query seed array... [1.45325s] Computing hash join... [1.74317s] Building seed filter... [0.046044s] Searching alignments... [12.5767s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.38988s] Building query seed array... [1.20386s] Computing hash join... [1.75064s] Building seed filter... [0.048104s] Searching alignments... [12.0439s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.30477s] Building query seed array... [1.06629s] Computing hash join... [1.62919s] Building seed filter... [0.044821s] Searching alignments... [12.646s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.20125s] Building query seed array... [1.2081s] Computing hash join... [1.65591s] Building seed filter... [0.043652s] Searching alignments... [7.99544s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.34997s] Building query seed array... [1.21749s] Computing hash join... [1.6431s] Building seed filter... [0.043208s] Searching alignments... [8.88234s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.34634s] Building query seed array... [1.05931s] Computing hash join... [1.63372s] Building seed filter... [0.046016s] Searching alignments... [7.98745s] Deallocating buffers... [0.04288s] Opening temporary output file... [0.030587s] Computing alignments... [57.3644s] Deallocating reference... [0.035419s] Loading reference sequences... [6e-05s] Deallocating buffers... [0.008385s] Joining output blocks... [45.288s] Deallocating queries... [0.031253s] Loading query sequences... [2.7e-05s] Closing the input file... [4.1e-05s] Closing the output file... [0.412761s] Closing the database file... [3.2e-05s] Deallocating taxonomy... [1e-05s] Total time = 4162.37s Reported 320178918 pairwise alignments, 320262288 HSPs. 924216 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.065213s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.146785s] Opening the output file... [0.000783s] Loading query sequences... [75.2129s] Masking queries... [77.6059s] Building query seed set... [0.341303s] Algorithm: Double-indexed Building query histograms... [2.05194s] Allocating buffers... [0.000702s] Loading reference sequences... [46.0921s] Masking reference... [59.2463s] Initializing temporary storage... [0.005108s] Building reference histograms... [12.7127s] Allocating buffers... [0.00023s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.09019s] Building query seed array... [1.30872s] Computing hash join... [4.0733s] Building seed filter... [0.092614s] Searching alignments... [76.8546s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3708s] Building query seed array... [1.42909s] Computing hash join... [4.0777s] Building seed filter... [0.097228s] Searching alignments... [64.6831s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4738s] Building query seed array... [1.46799s] Computing hash join... [4.12754s] Building seed filter... [0.096826s] Searching alignments... [38.478s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.67374s] Building query seed array... [1.22222s] Computing hash join... [4.14808s] Building seed filter... [0.090248s] Searching alignments... [37.29s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.64936s] Building query seed array... [1.12295s] Computing hash join... [3.96958s] Building seed filter... [0.080025s] Searching alignments... [40.3709s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1355s] Building query seed array... [1.20704s] Computing hash join... [4.02425s] Building seed filter... [0.082307s] Searching alignments... [28.6042s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.358s] Building query seed array... [1.34377s] Computing hash join... [3.96936s] Building seed filter... [0.076654s] Searching alignments... [27.573s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.57538s] Building query seed array... [1.03597s] Computing hash join... [3.95561s] Building seed filter... [0.091099s] Searching alignments... [27.0309s] Deallocating buffers... [0.112829s] Opening temporary output file... [0.000513s] Computing alignments... [105.113s] Deallocating reference... [0.081232s] Loading reference sequences... [383.776s] Masking reference... [58.9206s] Initializing temporary storage... [0.004002s] Building reference histograms... [12.5202s] Allocating buffers... [0.000191s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.90844s] Building query seed array... [1.23069s] Computing hash join... [4.07298s] Building seed filter... [0.092502s] Searching alignments... [57.7671s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3284s] Building query seed array... [1.45483s] Computing hash join... [4.15634s] Building seed filter... [0.082598s] Searching alignments... [39.0333s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5188s] Building query seed array... [1.47715s] Computing hash join... [4.10437s] Building seed filter... [0.082388s] Searching alignments... [29.4306s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.0451s] Building query seed array... [1.27369s] Computing hash join... [4.092s] Building seed filter... [0.085721s] Searching alignments... [28.3373s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.67471s] Building query seed array... [1.06597s] Computing hash join... [3.93305s] Building seed filter... [0.081554s] Searching alignments... [29.1605s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2529s] Building query seed array... [1.20379s] Computing hash join... [4.06449s] Building seed filter... [0.082782s] Searching alignments... [18.4719s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3175s] Building query seed array... [1.23316s] Computing hash join... [3.95307s] Building seed filter... [0.081389s] Searching alignments... [21.0403s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.83766s] Building query seed array... [1.19215s] Computing hash join... [3.94244s] Building seed filter... [0.087952s] Searching alignments... [19.1234s] Deallocating buffers... [0.10843s] Opening temporary output file... [0.001145s] Computing alignments... [77.3343s] Deallocating reference... [0.07525s] Loading reference sequences... [379.211s] Masking reference... [57.86s] Initializing temporary storage... [0.005165s] Building reference histograms... [12.8794s] Allocating buffers... [0.000189s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.98893s] Building query seed array... [1.26159s] Computing hash join... [4.15025s] Building seed filter... [0.088393s] Searching alignments... [65.1637s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2742s] Building query seed array... [1.49364s] Computing hash join... [4.10407s] Building seed filter... [0.085095s] Searching alignments... [45.4795s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5816s] Building query seed array... [1.52021s] Computing hash join... [4.12842s] Building seed filter... [0.085136s] Searching alignments... [32.1268s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.83935s] Building query seed array... [1.26542s] Computing hash join... [4.16081s] Building seed filter... [0.086111s] Searching alignments... [30.2158s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.73561s] Building query seed array... [1.07771s] Computing hash join... [3.93892s] Building seed filter... [0.07859s] Searching alignments... [34.0904s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1465s] Building query seed array... [1.30052s] Computing hash join... [3.98234s] Building seed filter... [0.082558s] Searching alignments... [21.713s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4013s] Building query seed array... [1.29634s] Computing hash join... [3.96608s] Building seed filter... [0.081678s] Searching alignments... [23.933s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.58111s] Building query seed array... [1.04032s] Computing hash join... [3.94855s] Building seed filter... [0.086913s] Searching alignments... [20.5743s] Deallocating buffers... [0.106963s] Opening temporary output file... [0.001478s] Computing alignments... [92.1069s] Deallocating reference... [0.071532s] Loading reference sequences... [41.0923s] Masking reference... [59.6793s] Initializing temporary storage... [0.005334s] Building reference histograms... [12.3206s] Allocating buffers... [0.000202s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.14759s] Building query seed array... [1.28444s] Computing hash join... [4.1963s] Building seed filter... [0.096352s] Searching alignments... [50.4734s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3796s] Building query seed array... [1.43992s] Computing hash join... [4.0988s] Building seed filter... [0.084736s] Searching alignments... [33.1765s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.6642s] Building query seed array... [1.67343s] Computing hash join... [4.08864s] Building seed filter... [0.094912s] Searching alignments... [25.8786s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.65976s] Building query seed array... [1.2965s] Computing hash join... [4.10102s] Building seed filter... [0.090871s] Searching alignments... [27.0862s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.86761s] Building query seed array... [1.18991s] Computing hash join... [3.9533s] Building seed filter... [0.081522s] Searching alignments... [25.9132s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1634s] Building query seed array... [1.22234s] Computing hash join... [3.95924s] Building seed filter... [0.080993s] Searching alignments... [17.7849s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4815s] Building query seed array... [1.51006s] Computing hash join... [4.01298s] Building seed filter... [0.082525s] Searching alignments... [21.0084s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.61336s] Building query seed array... [1.09714s] Computing hash join... [4.00511s] Building seed filter... [0.08406s] Searching alignments... [16.3362s] Deallocating buffers... [0.111111s] Opening temporary output file... [0.000874s] Computing alignments... [72.6973s] Deallocating reference... [0.081693s] Loading reference sequences... [39.9447s] Masking reference... [59.4691s] Initializing temporary storage... [0.004189s] Building reference histograms... [13.0354s] Allocating buffers... [0.000189s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.99426s] Building query seed array... [1.23593s] Computing hash join... [4.18119s] Building seed filter... [0.107561s] Searching alignments... [47.9896s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.4922s] Building query seed array... [1.48244s] Computing hash join... [4.16364s] Building seed filter... [0.09514s] Searching alignments... [33.7729s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4255s] Building query seed array... [1.48547s] Computing hash join... [4.09603s] Building seed filter... [0.10225s] Searching alignments... [25.1758s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.7053s] Building query seed array... [1.19217s] Computing hash join... [4.11835s] Building seed filter... [0.09188s] Searching alignments... [23.6756s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.7057s] Building query seed array... [1.07509s] Computing hash join... [3.99952s] Building seed filter... [0.082312s] Searching alignments... [26.2488s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2376s] Building query seed array... [1.48161s] Computing hash join... [4.03873s] Building seed filter... [0.084692s] Searching alignments... [18.2812s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.7358s] Building query seed array... [1.40736s] Computing hash join... [3.98106s] Building seed filter... [0.089778s] Searching alignments... [18.9834s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.57475s] Building query seed array... [1.03625s] Computing hash join... [3.94014s] Building seed filter... [0.08287s] Searching alignments... [16.6913s] Deallocating buffers... [0.104295s] Opening temporary output file... [0.001418s] Computing alignments... [69.3832s] Deallocating reference... [0.062339s] Loading reference sequences... [16.7136s] Masking reference... [21.9069s] Initializing temporary storage... [0.003567s] Building reference histograms... [4.64686s] Allocating buffers... [0.000186s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.31626s] Building query seed array... [1.24337s] Computing hash join... [1.73423s] Building seed filter... [0.052509s] Searching alignments... [24.6859s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23092s] Building query seed array... [1.36199s] Computing hash join... [1.77656s] Building seed filter... [0.049576s] Searching alignments... [18.4866s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.4726s] Building query seed array... [1.41427s] Computing hash join... [1.74789s] Building seed filter... [0.051572s] Searching alignments... [12.6955s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.2699s] Building query seed array... [1.18021s] Computing hash join... [1.7886s] Building seed filter... [0.04979s] Searching alignments... [12.0179s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26781s] Building query seed array... [1.04015s] Computing hash join... [1.66037s] Building seed filter... [0.04413s] Searching alignments... [12.8408s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.37169s] Building query seed array... [1.28341s] Computing hash join... [1.66706s] Building seed filter... [0.053s] Searching alignments... [7.856s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.30992s] Building query seed array... [1.20368s] Computing hash join... [1.64182s] Building seed filter... [0.046679s] Searching alignments... [8.86143s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.31591s] Building query seed array... [1.03821s] Computing hash join... [1.61964s] Building seed filter... [0.045246s] Searching alignments... [7.89231s] Deallocating buffers... [0.042924s] Opening temporary output file... [0.015317s] Computing alignments... [55.8052s] Deallocating reference... [0.028489s] Loading reference sequences... [4.5e-05s] Deallocating buffers... [0.00655s] Joining output blocks... [42.9481s] Deallocating queries... [0.033381s] Loading query sequences... [2.8e-05s] Closing the input file... [5e-05s] Closing the output file... [0.406545s] Closing the database file... [2.9e-05s] Deallocating taxonomy... [1e-05s] Total time = 4030.31s Reported 317121663 pairwise alignments, 317205568 HSPs. 910506 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.057242s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.079544s] Opening the output file... [0.000266s] Loading query sequences... [163.362s] Masking queries... [124.545s] Building query seed set... [0.615379s] Algorithm: Double-indexed Building query histograms... [3.5156s] Allocating buffers... [0.00069s] Loading reference sequences... [45.4389s] Masking reference... [58.6707s] Initializing temporary storage... [0.005277s] Building reference histograms... [12.3227s] Allocating buffers... [0.000207s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.95534s] Building query seed array... [2.26478s] Computing hash join... [4.20526s] Building seed filter... [0.096165s] Searching alignments... [91.0679s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3253s] Building query seed array... [2.33404s] Computing hash join... [4.27118s] Building seed filter... [0.10105s] Searching alignments... [103.726s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4809s] Building query seed array... [2.50466s] Computing hash join... [4.30047s] Building seed filter... [0.096089s] Searching alignments... [51.6976s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.67499s] Building query seed array... [2.14021s] Computing hash join... [4.21116s] Building seed filter... [0.1088s] Searching alignments... [89.2376s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.59214s] Building query seed array... [2.03167s] Computing hash join... [4.06228s] Building seed filter... [0.094412s] Searching alignments... [52.9692s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2862s] Building query seed array... [2.20717s] Computing hash join... [4.16587s] Building seed filter... [0.087875s] Searching alignments... [72.994s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.457s] Building query seed array... [2.3315s] Computing hash join... [4.13477s] Building seed filter... [0.084582s] Searching alignments... [61.0894s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.56633s] Building query seed array... [1.96519s] Computing hash join... [4.06659s] Building seed filter... [0.089132s] Searching alignments... [48.2313s] Deallocating buffers... [0.137333s] Opening temporary output file... [0.001046s] Computing alignments... [199.585s] Deallocating reference... [0.09136s] Loading reference sequences... [48.6808s] Masking reference... [57.6125s] Initializing temporary storage... [0.004012s] Building reference histograms... [12.4014s] Allocating buffers... [0.000217s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.11083s] Building query seed array... [2.3328s] Computing hash join... [4.21144s] Building seed filter... [0.09951s] Searching alignments... [73.435s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.4924s] Building query seed array... [2.41265s] Computing hash join... [4.23706s] Building seed filter... [0.120719s] Searching alignments... [67.8169s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.603s] Building query seed array... [2.43901s] Computing hash join... [4.22213s] Building seed filter... [0.100055s] Searching alignments... [43.6444s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.74142s] Building query seed array... [2.14671s] Computing hash join... [4.18934s] Building seed filter... [0.099255s] Searching alignments... [61.5649s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.63995s] Building query seed array... [1.9733s] Computing hash join... [4.11037s] Building seed filter... [0.088037s] Searching alignments... [37.3025s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.354s] Building query seed array... [2.32299s] Computing hash join... [4.03105s] Building seed filter... [0.085523s] Searching alignments... [38.7834s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3738s] Building query seed array... [2.25473s] Computing hash join... [4.04662s] Building seed filter... [0.086742s] Searching alignments... [39.4467s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.62165s] Building query seed array... [2.05109s] Computing hash join... [4.04084s] Building seed filter... [0.090908s] Searching alignments... [39.581s] Deallocating buffers... [0.118059s] Opening temporary output file... [0.000636s] Computing alignments... [159.033s] Deallocating reference... [0.071622s] Loading reference sequences... [49.9252s] Masking reference... [57.5453s] Initializing temporary storage... [0.004018s] Building reference histograms... [12.2286s] Allocating buffers... [0.000188s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.06759s] Building query seed array... [2.29277s] Computing hash join... [4.24778s] Building seed filter... [0.099531s] Searching alignments... [81.5764s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3369s] Building query seed array... [2.4013s] Computing hash join... [4.28902s] Building seed filter... [0.106803s] Searching alignments... [79.0333s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.8661s] Building query seed array... [2.58056s] Computing hash join... [4.25043s] Building seed filter... [0.107245s] Searching alignments... [53.5979s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.94673s] Building query seed array... [2.24367s] Computing hash join... [4.21255s] Building seed filter... [0.101383s] Searching alignments... [83.1019s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.6869s] Building query seed array... [1.97018s] Computing hash join... [4.06907s] Building seed filter... [0.086266s] Searching alignments... [48.0937s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.6074s] Building query seed array... [2.31773s] Computing hash join... [4.04013s] Building seed filter... [0.088627s] Searching alignments... [49.828s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.7498s] Building query seed array... [2.33856s] Computing hash join... [4.19532s] Building seed filter... [0.086058s] Searching alignments... [53.8348s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.72521s] Building query seed array... [2.06435s] Computing hash join... [4.05874s] Building seed filter... [0.091087s] Searching alignments... [61.9263s] Deallocating buffers... [0.120807s] Opening temporary output file... [0.011336s] Computing alignments... [188.315s] Deallocating reference... [0.071199s] Loading reference sequences... [40.2358s] Masking reference... [58.5787s] Initializing temporary storage... [0.005318s] Building reference histograms... [12.1555s] Allocating buffers... [0.000813s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.91623s] Building query seed array... [2.2404s] Computing hash join... [4.28711s] Building seed filter... [0.103681s] Searching alignments... [57.7888s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.394s] Building query seed array... [2.54859s] Computing hash join... [4.21252s] Building seed filter... [0.092287s] Searching alignments... [59.7902s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5899s] Building query seed array... [2.53977s] Computing hash join... [4.18803s] Building seed filter... [0.093912s] Searching alignments... [37.3123s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.72499s] Building query seed array... [2.1403s] Computing hash join... [4.2177s] Building seed filter... [0.093665s] Searching alignments... [50.0346s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.76886s] Building query seed array... [2.11312s] Computing hash join... [4.13268s] Building seed filter... [0.085302s] Searching alignments... [31.0067s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.5167s] Building query seed array... [2.22635s] Computing hash join... [4.06727s] Building seed filter... [0.095507s] Searching alignments... [38.3305s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4367s] Building query seed array... [2.25251s] Computing hash join... [4.10132s] Building seed filter... [0.090209s] Searching alignments... [34.9474s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.65083s] Building query seed array... [1.96313s] Computing hash join... [4.09412s] Building seed filter... [0.099129s] Searching alignments... [34.568s] Deallocating buffers... [0.116033s] Opening temporary output file... [0.000659s] Computing alignments... [137.153s] Deallocating reference... [0.079777s] Loading reference sequences... [350.023s] Masking reference... [58.2872s] Initializing temporary storage... [0.005179s] Building reference histograms... [12.2066s] Allocating buffers... [0.000178s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.93868s] Building query seed array... [2.23536s] Computing hash join... [4.23846s] Building seed filter... [0.097962s] Searching alignments... [58.701s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.1841s] Building query seed array... [2.44127s] Computing hash join... [4.23785s] Building seed filter... [0.097017s] Searching alignments... [53.61s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.5108s] Building query seed array... [2.36707s] Computing hash join... [4.2212s] Building seed filter... [0.105441s] Searching alignments... [38.0418s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.69751s] Building query seed array... [2.12321s] Computing hash join... [4.29998s] Building seed filter... [0.097999s] Searching alignments... [47.6736s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.99358s] Building query seed array... [2.05976s] Computing hash join... [4.10373s] Building seed filter... [0.08808s] Searching alignments... [27.1621s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1186s] Building query seed array... [2.15393s] Computing hash join... [4.08417s] Building seed filter... [0.087553s] Searching alignments... [34.1961s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.6201s] Building query seed array... [2.26051s] Computing hash join... [4.18585s] Building seed filter... [0.085785s] Searching alignments... [30.2452s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.51339s] Building query seed array... [2.04456s] Computing hash join... [4.11806s] Building seed filter... [0.091673s] Searching alignments... [31.2942s] Deallocating buffers... [0.115964s] Opening temporary output file... [0.009627s] Computing alignments... [138.542s] Deallocating reference... [0.063736s] Loading reference sequences... [151.616s] Masking reference... [21.4046s] Initializing temporary storage... [0.003965s] Building reference histograms... [4.7257s] Allocating buffers... [0.000188s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.29278s] Building query seed array... [2.23683s] Computing hash join... [1.78834s] Building seed filter... [0.058849s] Searching alignments... [28.2386s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21487s] Building query seed array... [2.44282s] Computing hash join... [1.77515s] Building seed filter... [0.050951s] Searching alignments... [31.1698s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.3689s] Building query seed array... [2.41201s] Computing hash join... [1.80951s] Building seed filter... [0.052481s] Searching alignments... [17.1443s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.28703s] Building query seed array... [2.1247s] Computing hash join... [1.79028s] Building seed filter... [0.057247s] Searching alignments... [32.1313s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.27069s] Building query seed array... [2.0942s] Computing hash join... [1.73208s] Building seed filter... [0.048423s] Searching alignments... [19.6907s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.26592s] Building query seed array... [2.13006s] Computing hash join... [1.76378s] Building seed filter... [0.049904s] Searching alignments... [23.1412s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27725s] Building query seed array... [2.24872s] Computing hash join... [1.77741s] Building seed filter... [0.049037s] Searching alignments... [20.5796s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.241s] Building query seed array... [1.95319s] Computing hash join... [1.7365s] Building seed filter... [0.049738s] Searching alignments... [14.7167s] Deallocating buffers... [0.046176s] Opening temporary output file... [0.022556s] Computing alignments... [115.974s] Deallocating reference... [0.02855s] Loading reference sequences... [0.058478s] Deallocating buffers... [0.009002s] Joining output blocks... [84.7418s] Deallocating queries... [0.072464s] Loading query sequences... [3.3e-05s] Closing the input file... [5.3e-05s] Closing the output file... [0.307052s] Closing the database file... [2.9e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 5444.48s Reported 1065268970 pairwise alignments, 1065292211 HSPs. 1616509 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.076459s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.087532s] Opening the output file... [0.000325s] Loading query sequences... [167.878s] Masking queries... [126.58s] Building query seed set... [0.727295s] Algorithm: Double-indexed Building query histograms... [3.53995s] Allocating buffers... [0.000633s] Loading reference sequences... [43.8302s] Masking reference... [57.2905s] Initializing temporary storage... [0.005933s] Building reference histograms... [12.3602s] Allocating buffers... [0.000208s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.9983s] Building query seed array... [2.22537s] Computing hash join... [4.32401s] Building seed filter... [0.106821s] Searching alignments... [50.0144s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2909s] Building query seed array... [2.33872s] Computing hash join... [4.31338s] Building seed filter... [0.104968s] Searching alignments... [62.6904s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5314s] Building query seed array... [2.40383s] Computing hash join... [4.25182s] Building seed filter... [0.103054s] Searching alignments... [37.9387s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.63533s] Building query seed array... [2.19959s] Computing hash join... [4.24656s] Building seed filter... [0.104021s] Searching alignments... [74.9045s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.64978s] Building query seed array... [1.9563s] Computing hash join... [4.17079s] Building seed filter... [0.093914s] Searching alignments... [30.4623s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1935s] Building query seed array... [2.20666s] Computing hash join... [4.14461s] Building seed filter... [0.095141s] Searching alignments... [25.1656s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3761s] Building query seed array... [2.21477s] Computing hash join... [4.1258s] Building seed filter... [0.093335s] Searching alignments... [31.1168s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.61268s] Building query seed array... [1.96235s] Computing hash join... [4.08946s] Building seed filter... [0.097926s] Searching alignments... [27.0199s] Deallocating buffers... [0.120613s] Opening temporary output file... [0.001768s] Computing alignments... [140.983s] Deallocating reference... [0.094541s] Loading reference sequences... [389.812s] Masking reference... [57.906s] Initializing temporary storage... [0.005081s] Building reference histograms... [12.1657s] Allocating buffers... [0.000193s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.94383s] Building query seed array... [2.25609s] Computing hash join... [4.25067s] Building seed filter... [0.108271s] Searching alignments... [43.1104s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3625s] Building query seed array... [2.37842s] Computing hash join... [4.21261s] Building seed filter... [0.098119s] Searching alignments... [56.3951s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4729s] Building query seed array... [2.53336s] Computing hash join... [4.29143s] Building seed filter... [0.107554s] Searching alignments... [32.4166s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.68364s] Building query seed array... [2.13648s] Computing hash join... [4.22655s] Building seed filter... [0.106214s] Searching alignments... [56.8899s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.64791s] Building query seed array... [1.94126s] Computing hash join... [4.10544s] Building seed filter... [0.097473s] Searching alignments... [25.3809s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1831s] Building query seed array... [2.22653s] Computing hash join... [4.11641s] Building seed filter... [0.107351s] Searching alignments... [20.7585s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4107s] Building query seed array... [2.2861s] Computing hash join... [4.07903s] Building seed filter... [0.095882s] Searching alignments... [24.1935s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.65089s] Building query seed array... [2.00648s] Computing hash join... [4.0833s] Building seed filter... [0.105487s] Searching alignments... [21.9687s] Deallocating buffers... [0.1086s] Opening temporary output file... [0.001482s] Computing alignments... [126.248s] Deallocating reference... [0.071799s] Loading reference sequences... [383.052s] Masking reference... [57.8717s] Initializing temporary storage... [0.004545s] Building reference histograms... [12.6264s] Allocating buffers... [0.000206s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.96468s] Building query seed array... [2.1954s] Computing hash join... [4.25566s] Building seed filter... [0.096838s] Searching alignments... [49.1273s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3976s] Building query seed array... [2.42393s] Computing hash join... [4.35965s] Building seed filter... [0.0954s] Searching alignments... [49.2947s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4325s] Building query seed array... [2.51622s] Computing hash join... [4.21262s] Building seed filter... [0.099655s] Searching alignments... [34.9988s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.66941s] Building query seed array... [2.19985s] Computing hash join... [4.29013s] Building seed filter... [0.098489s] Searching alignments... [67.2359s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.641s] Building query seed array... [1.97537s] Computing hash join... [4.13951s] Building seed filter... [0.09461s] Searching alignments... [28.3193s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1399s] Building query seed array... [2.21156s] Computing hash join... [4.07837s] Building seed filter... [0.103104s] Searching alignments... [22.9651s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3248s] Building query seed array... [2.27158s] Computing hash join... [4.14235s] Building seed filter... [0.095233s] Searching alignments... [27.7328s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.67814s] Building query seed array... [2.01661s] Computing hash join... [4.18152s] Building seed filter... [0.103531s] Searching alignments... [24.8553s] Deallocating buffers... [0.126904s] Opening temporary output file... [0.001286s] Computing alignments... [135.368s] Deallocating reference... [0.071531s] Loading reference sequences... [356.085s] Masking reference... [57.701s] Initializing temporary storage... [0.004104s] Building reference histograms... [12.1003s] Allocating buffers... [0.000184s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.96342s] Building query seed array... [2.22316s] Computing hash join... [4.30074s] Building seed filter... [0.104543s] Searching alignments... [39.5692s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3762s] Building query seed array... [2.40156s] Computing hash join... [4.30936s] Building seed filter... [0.103469s] Searching alignments... [34.1744s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.7848s] Building query seed array... [2.53961s] Computing hash join... [4.21137s] Building seed filter... [0.098394s] Searching alignments... [28.8484s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.13598s] Building query seed array... [2.18897s] Computing hash join... [4.28021s] Building seed filter... [0.105645s] Searching alignments... [39.0314s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.64536s] Building query seed array... [2.07327s] Computing hash join... [4.1822s] Building seed filter... [0.097359s] Searching alignments... [24.2282s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2298s] Building query seed array... [2.21217s] Computing hash join... [4.17759s] Building seed filter... [0.093949s] Searching alignments... [21.4315s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3709s] Building query seed array... [2.25874s] Computing hash join... [4.10061s] Building seed filter... [0.092994s] Searching alignments... [28.9474s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.64214s] Building query seed array... [1.9338s] Computing hash join... [4.15008s] Building seed filter... [0.101811s] Searching alignments... [19.5204s] Deallocating buffers... [0.108201s] Opening temporary output file... [0.000985s] Computing alignments... [125.859s] Deallocating reference... [0.064746s] Loading reference sequences... [349.011s] Masking reference... [57.541s] Initializing temporary storage... [0.005126s] Building reference histograms... [12.6641s] Allocating buffers... [0.000216s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.27642s] Building query seed array... [2.29478s] Computing hash join... [4.34898s] Building seed filter... [0.105901s] Searching alignments... [38.7295s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.1733s] Building query seed array... [2.37943s] Computing hash join... [4.23197s] Building seed filter... [0.102921s] Searching alignments... [32.7101s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.5297s] Building query seed array... [2.45982s] Computing hash join... [4.2329s] Building seed filter... [0.107987s] Searching alignments... [30.1607s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.65287s] Building query seed array... [2.1605s] Computing hash join... [4.2829s] Building seed filter... [0.099668s] Searching alignments... [44.6862s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.63051s] Building query seed array... [1.95225s] Computing hash join... [4.15116s] Building seed filter... [0.094924s] Searching alignments... [23.3989s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2532s] Building query seed array... [2.19558s] Computing hash join... [4.22789s] Building seed filter... [0.096248s] Searching alignments... [19.6395s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.2995s] Building query seed array... [2.21208s] Computing hash join... [4.12689s] Building seed filter... [0.098584s] Searching alignments... [23.4413s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.55484s] Building query seed array... [2.00254s] Computing hash join... [4.09349s] Building seed filter... [0.099257s] Searching alignments... [20.1657s] Deallocating buffers... [0.104228s] Opening temporary output file... [0.001035s] Computing alignments... [124.312s] Deallocating reference... [0.06303s] Loading reference sequences... [17.2509s] Masking reference... [21.7449s] Initializing temporary storage... [0.003696s] Building reference histograms... [4.55816s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.40473s] Building query seed array... [2.21073s] Computing hash join... [1.78877s] Building seed filter... [0.058374s] Searching alignments... [16.8029s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.24474s] Building query seed array... [2.29629s] Computing hash join... [1.81247s] Building seed filter... [0.060452s] Searching alignments... [25.3483s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.37069s] Building query seed array... [2.47227s] Computing hash join... [1.81607s] Building seed filter... [0.05405s] Searching alignments... [13.0019s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.24633s] Building query seed array... [2.18184s] Computing hash join... [1.80874s] Building seed filter... [0.054269s] Searching alignments... [20.6742s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.24955s] Building query seed array... [1.97557s] Computing hash join... [1.76771s] Building seed filter... [0.052892s] Searching alignments... [9.8433s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.16175s] Building query seed array... [2.20411s] Computing hash join... [1.75886s] Building seed filter... [0.050517s] Searching alignments... [8.22771s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.28124s] Building query seed array... [2.27515s] Computing hash join... [1.7487s] Building seed filter... [0.050752s] Searching alignments... [10.1754s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.31415s] Building query seed array... [1.97082s] Computing hash join... [1.74429s] Building seed filter... [0.052378s] Searching alignments... [8.79953s] Deallocating buffers... [0.042611s] Opening temporary output file... [0.033235s] Computing alignments... [108.09s] Deallocating reference... [0.028874s] Loading reference sequences... [0.013768s] Deallocating buffers... [0.006884s] Joining output blocks... [68.7591s] Deallocating queries... [0.080084s] Loading query sequences... [2.8e-05s] Closing the input file... [5.1e-05s] Closing the output file... [0.31295s] Closing the database file... [5.4e-05s] Deallocating taxonomy... [1.9e-05s] Total time = 5278.65s Reported 439186464 pairwise alignments, 439198150 HSPs. 1451421 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.068499s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.105861s] Opening the output file... [0.000347s] Loading query sequences... [97.2879s] Masking queries... [54.43s] Building query seed set... [0.370727s] Algorithm: Double-indexed Building query histograms... [3.61541s] Allocating buffers... [0.000703s] Loading reference sequences... [47.4315s] Masking reference... [59.1521s] Initializing temporary storage... [0.005068s] Building reference histograms... [12.0793s] Allocating buffers... [0.000207s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.91822s] Building query seed array... [2.46792s] Computing hash join... [4.33464s] Building seed filter... [0.057673s] Searching alignments... [252.075s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2741s] Building query seed array... [2.90672s] Computing hash join... [4.34042s] Building seed filter... [0.059883s] Searching alignments... [177.926s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4022s] Building query seed array... [2.98154s] Computing hash join... [4.38429s] Building seed filter... [0.056811s] Searching alignments... [163.104s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.672s] Building query seed array... [2.45299s] Computing hash join... [4.40832s] Building seed filter... [0.063888s] Searching alignments... [140.298s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.64828s] Building query seed array... [2.25675s] Computing hash join... [4.23949s] Building seed filter... [0.05494s] Searching alignments... [163.653s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.197s] Building query seed array... [2.72578s] Computing hash join... [4.27984s] Building seed filter... [0.06092s] Searching alignments... [108.271s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3788s] Building query seed array... [2.98383s] Computing hash join... [4.16669s] Building seed filter... [0.054219s] Searching alignments... [126.805s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.57713s] Building query seed array... [2.20695s] Computing hash join... [4.22643s] Building seed filter... [0.05751s] Searching alignments... [110.56s] Deallocating buffers... [0.121427s] Opening temporary output file... [0.001137s] Computing alignments... [545.472s] Deallocating reference... [0.095108s] Loading reference sequences... [386.11s] Masking reference... [57.7538s] Initializing temporary storage... [0.004096s] Building reference histograms... [13.034s] Allocating buffers... [0.000201s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.98121s] Building query seed array... [2.41897s] Computing hash join... [4.29677s] Building seed filter... [0.05926s] Searching alignments... [197.996s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2785s] Building query seed array... [2.95424s] Computing hash join... [4.36277s] Building seed filter... [0.058509s] Searching alignments... [140.786s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5334s] Building query seed array... [3.02174s] Computing hash join... [4.45181s] Building seed filter... [0.064856s] Searching alignments... [131.773s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.85223s] Building query seed array... [2.49076s] Computing hash join... [4.37832s] Building seed filter... [0.060691s] Searching alignments... [114.556s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.66612s] Building query seed array... [2.19805s] Computing hash join... [4.1829s] Building seed filter... [0.053978s] Searching alignments... [148.959s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2238s] Building query seed array... [2.73986s] Computing hash join... [4.32203s] Building seed filter... [0.057145s] Searching alignments... [89.8921s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.5121s] Building query seed array... [2.80591s] Computing hash join... [4.22602s] Building seed filter... [0.06114s] Searching alignments... [98.2406s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.80745s] Building query seed array... [2.34823s] Computing hash join... [4.13664s] Building seed filter... [0.055898s] Searching alignments... [97.5658s] Deallocating buffers... [0.127195s] Opening temporary output file... [0.001265s] Computing alignments... [415.691s] Deallocating reference... [0.071034s] Loading reference sequences... [397.425s] Masking reference... [57.9928s] Initializing temporary storage... [0.004418s] Building reference histograms... [12.1114s] Allocating buffers... [0.000202s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.89689s] Building query seed array... [2.42398s] Computing hash join... [4.34955s] Building seed filter... [0.057809s] Searching alignments... [233.963s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.5438s] Building query seed array... [3.02042s] Computing hash join... [4.39351s] Building seed filter... [0.058686s] Searching alignments... [162.219s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5268s] Building query seed array... [3.03134s] Computing hash join... [4.38062s] Building seed filter... [0.060636s] Searching alignments... [154.899s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.01286s] Building query seed array... [2.50267s] Computing hash join... [4.39578s] Building seed filter... [0.061706s] Searching alignments... [133.455s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.67781s] Building query seed array... [2.31512s] Computing hash join... [4.18292s] Building seed filter... [0.054239s] Searching alignments... [176.678s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2434s] Building query seed array... [2.72259s] Computing hash join... [4.3406s] Building seed filter... [0.057106s] Searching alignments... [117.703s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.5002s] Building query seed array... [2.76126s] Computing hash join... [4.22541s] Building seed filter... [0.059344s] Searching alignments... [115.493s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.59027s] Building query seed array... [2.21527s] Computing hash join... [4.1255s] Building seed filter... [0.059664s] Searching alignments... [107.059s] Deallocating buffers... [0.119397s] Opening temporary output file... [0.001304s] Computing alignments... [522.263s] Deallocating reference... [0.08403s] Loading reference sequences... [361.386s] Masking reference... [57.8103s] Initializing temporary storage... [0.004185s] Building reference histograms... [12.008s] Allocating buffers... [0.000207s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.92495s] Building query seed array... [2.46315s] Computing hash join... [4.36633s] Building seed filter... [0.063836s] Searching alignments... [174.918s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3851s] Building query seed array... [2.96712s] Computing hash join... [4.34137s] Building seed filter... [0.066441s] Searching alignments... [126.266s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4491s] Building query seed array... [2.99406s] Computing hash join... [4.31524s] Building seed filter... [0.064586s] Searching alignments... [114.119s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.68983s] Building query seed array... [2.45265s] Computing hash join... [4.37617s] Building seed filter... [0.059682s] Searching alignments... [104.497s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.66356s] Building query seed array... [2.21099s] Computing hash join... [4.1631s] Building seed filter... [0.054291s] Searching alignments... [137.354s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1954s] Building query seed array... [2.73974s] Computing hash join... [4.25055s] Building seed filter... [0.060037s] Searching alignments... [80.7828s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4584s] Building query seed array... [2.79466s] Computing hash join... [4.21768s] Building seed filter... [0.054085s] Searching alignments... [83.9792s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.72586s] Building query seed array... [2.27463s] Computing hash join... [4.1493s] Building seed filter... [0.058704s] Searching alignments... [79.2309s] Deallocating buffers... [0.113663s] Opening temporary output file... [0.001438s] Computing alignments... [372.09s] Deallocating reference... [0.083141s] Loading reference sequences... [349.449s] Masking reference... [57.8141s] Initializing temporary storage... [0.005019s] Building reference histograms... [12.0425s] Allocating buffers... [0.000187s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.83808s] Building query seed array... [2.42426s] Computing hash join... [4.38972s] Building seed filter... [0.065724s] Searching alignments... [165.197s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.4s] Building query seed array... [2.95107s] Computing hash join... [4.39971s] Building seed filter... [0.055637s] Searching alignments... [122.173s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4539s] Building query seed array... [3.31123s] Computing hash join... [4.7418s] Building seed filter... [0.061317s] Searching alignments... [116.45s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.66149s] Building query seed array... [2.41196s] Computing hash join... [4.36333s] Building seed filter... [0.059444s] Searching alignments... [102.683s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.68319s] Building query seed array... [2.25809s] Computing hash join... [4.13508s] Building seed filter... [0.06045s] Searching alignments... [136.852s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1201s] Building query seed array... [2.65527s] Computing hash join... [4.33319s] Building seed filter... [0.059523s] Searching alignments... [77.505s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.369s] Building query seed array... [2.68554s] Computing hash join... [4.27726s] Building seed filter... [0.05499s] Searching alignments... [84.7541s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.99944s] Building query seed array... [2.27469s] Computing hash join... [4.16323s] Building seed filter... [0.060494s] Searching alignments... [91.9531s] Deallocating buffers... [0.119652s] Opening temporary output file... [0.000718s] Computing alignments... [357.299s] Deallocating reference... [0.077872s] Loading reference sequences... [16.8386s] Masking reference... [21.713s] Initializing temporary storage... [0.004799s] Building reference histograms... [4.57522s] Allocating buffers... [0.000184s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.35588s] Building query seed array... [2.4163s] Computing hash join... [2.17213s] Building seed filter... [0.036932s] Searching alignments... [76.238s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22281s] Building query seed array... [2.90019s] Computing hash join... [2.16257s] Building seed filter... [0.035233s] Searching alignments... [57.8995s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30947s] Building query seed array... [3.00643s] Computing hash join... [2.13812s] Building seed filter... [0.033787s] Searching alignments... [50.6721s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25054s] Building query seed array... [2.83261s] Computing hash join... [2.26878s] Building seed filter... [0.035707s] Searching alignments... [44.9729s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.37471s] Building query seed array... [2.21698s] Computing hash join... [2.00646s] Building seed filter... [0.033082s] Searching alignments... [45.807s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.23779s] Building query seed array... [3.08378s] Computing hash join... [2.16654s] Building seed filter... [0.032744s] Searching alignments... [42.3787s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.6594s] Building query seed array... [2.82538s] Computing hash join... [2.03659s] Building seed filter... [0.033325s] Searching alignments... [40.3476s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22863s] Building query seed array... [2.18413s] Computing hash join... [2.01266s] Building seed filter... [0.036106s] Searching alignments... [34.027s] Deallocating buffers... [0.051304s] Opening temporary output file... [0.016725s] Computing alignments... [172.232s] Deallocating reference... [0.028993s] Loading reference sequences... [0.033559s] Deallocating buffers... [0.022976s] Joining output blocks... [278.299s] Deallocating queries... [0.045146s] Loading query sequences... [2.9e-05s] Closing the input file... [5.2e-05s] Closing the output file... [0.435848s] Closing the database file... [5.6e-05s] Deallocating taxonomy... [6.6e-05s] Total time = 11164.8s Reported 2162533543 pairwise alignments, 2162623227 HSPs. 4724324 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.049067s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.082669s] Opening the output file... [0.000755s] Loading query sequences... [100.317s] Masking queries... [59.1849s] Building query seed set... [0.380044s] Algorithm: Double-indexed Building query histograms... [3.64314s] Allocating buffers... [0.00078s] Loading reference sequences... [46.3729s] Masking reference... [59.0489s] Initializing temporary storage... [0.005209s] Building reference histograms... [12.7901s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.92351s] Building query seed array... [2.47715s] Computing hash join... [4.3916s] Building seed filter... [0.070429s] Searching alignments... [250.927s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2641s] Building query seed array... [2.86324s] Computing hash join... [4.45648s] Building seed filter... [0.071794s] Searching alignments... [171.545s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5504s] Building query seed array... [2.93155s] Computing hash join... [4.46479s] Building seed filter... [0.065989s] Searching alignments... [158.129s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.63543s] Building query seed array... [2.45823s] Computing hash join... [4.41601s] Building seed filter... [0.066725s] Searching alignments... [140.503s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.61413s] Building query seed array... [2.26141s] Computing hash join... [4.25372s] Building seed filter... [0.066829s] Searching alignments... [157.887s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1445s] Building query seed array... [2.64522s] Computing hash join... [4.31253s] Building seed filter... [0.063987s] Searching alignments... [107.211s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3981s] Building query seed array... [2.74493s] Computing hash join... [4.22049s] Building seed filter... [0.066005s] Searching alignments... [124.827s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.62369s] Building query seed array... [2.22042s] Computing hash join... [4.26718s] Building seed filter... [0.066625s] Searching alignments... [113.075s] Deallocating buffers... [0.122936s] Opening temporary output file... [0.001083s] Computing alignments... [533.58s] Deallocating reference... [0.076743s] Loading reference sequences... [43.9828s] Masking reference... [58.1798s] Initializing temporary storage... [0.004667s] Building reference histograms... [12.993s] Allocating buffers... [0.000203s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.03635s] Building query seed array... [2.42246s] Computing hash join... [4.37627s] Building seed filter... [0.070121s] Searching alignments... [194.54s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2597s] Building query seed array... [2.94625s] Computing hash join... [4.44201s] Building seed filter... [0.068824s] Searching alignments... [135.185s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4643s] Building query seed array... [2.96581s] Computing hash join... [4.40067s] Building seed filter... [0.068904s] Searching alignments... [130.071s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.6202s] Building query seed array... [2.49859s] Computing hash join... [4.40285s] Building seed filter... [0.063468s] Searching alignments... [112.141s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.67253s] Building query seed array... [2.31006s] Computing hash join... [4.29687s] Building seed filter... [0.064097s] Searching alignments... [148.012s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1647s] Building query seed array... [2.64819s] Computing hash join... [4.43737s] Building seed filter... [0.064408s] Searching alignments... [87.7628s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3995s] Building query seed array... [2.82261s] Computing hash join... [4.22518s] Building seed filter... [0.064668s] Searching alignments... [97.9778s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.57216s] Building query seed array... [2.20741s] Computing hash join... [4.23618s] Building seed filter... [0.063054s] Searching alignments... [97.0805s] Deallocating buffers... [0.116734s] Opening temporary output file... [0.001187s] Computing alignments... [410.723s] Deallocating reference... [0.071859s] Loading reference sequences... [393.798s] Masking reference... [57.6572s] Initializing temporary storage... [0.004008s] Building reference histograms... [12.9906s] Allocating buffers... [0.000206s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.91894s] Building query seed array... [2.43228s] Computing hash join... [4.38631s] Building seed filter... [0.065231s] Searching alignments... [228.755s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3649s] Building query seed array... [2.95143s] Computing hash join... [4.42542s] Building seed filter... [0.062517s] Searching alignments... [159.523s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4487s] Building query seed array... [3.0348s] Computing hash join... [4.49109s] Building seed filter... [0.069143s] Searching alignments... [152.117s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.66557s] Building query seed array... [2.44176s] Computing hash join... [4.46064s] Building seed filter... [0.07039s] Searching alignments... [131.553s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.7635s] Building query seed array... [2.29793s] Computing hash join... [4.23506s] Building seed filter... [0.058549s] Searching alignments... [172.487s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2392s] Building query seed array... [2.71798s] Computing hash join... [4.37147s] Building seed filter... [0.065782s] Searching alignments... [101.612s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3866s] Building query seed array... [2.77654s] Computing hash join... [4.28034s] Building seed filter... [0.06219s] Searching alignments... [114.28s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.9232s] Building query seed array... [2.27191s] Computing hash join... [4.23993s] Building seed filter... [0.066063s] Searching alignments... [107.382s] Deallocating buffers... [0.119273s] Opening temporary output file... [0.001224s] Computing alignments... [513.72s] Deallocating reference... [0.07238s] Loading reference sequences... [372.817s] Masking reference... [57.7587s] Initializing temporary storage... [0.006353s] Building reference histograms... [12.856s] Allocating buffers... [0.000193s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.13616s] Building query seed array... [2.50254s] Computing hash join... [4.41611s] Building seed filter... [0.072898s] Searching alignments... [171.569s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2861s] Building query seed array... [2.94935s] Computing hash join... [4.50497s] Building seed filter... [0.065098s] Searching alignments... [128.451s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.6589s] Building query seed array... [3.05585s] Computing hash join... [4.4247s] Building seed filter... [0.065s] Searching alignments... [111.326s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.69538s] Building query seed array... [2.42241s] Computing hash join... [4.50834s] Building seed filter... [0.064281s] Searching alignments... [102.672s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.13862s] Building query seed array... [2.29035s] Computing hash join... [4.30439s] Building seed filter... [0.061246s] Searching alignments... [136.003s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1917s] Building query seed array... [2.73615s] Computing hash join... [4.38962s] Building seed filter... [0.06905s] Searching alignments... [78.6219s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.7928s] Building query seed array... [2.86634s] Computing hash join... [4.28271s] Building seed filter... [0.067742s] Searching alignments... [82.5179s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.59139s] Building query seed array... [2.18722s] Computing hash join... [4.25569s] Building seed filter... [0.06525s] Searching alignments... [80.4349s] Deallocating buffers... [0.115131s] Opening temporary output file... [0.00071s] Computing alignments... [369.328s] Deallocating reference... [0.078498s] Loading reference sequences... [357.93s] Masking reference... [59.3584s] Initializing temporary storage... [0.004524s] Building reference histograms... [13.1365s] Allocating buffers... [0.000194s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.97129s] Building query seed array... [2.41765s] Computing hash join... [4.39194s] Building seed filter... [0.071615s] Searching alignments... [161.327s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.4886s] Building query seed array... [3.01217s] Computing hash join... [4.48557s] Building seed filter... [0.06426s] Searching alignments... [118.747s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.7624s] Building query seed array... [3.04853s] Computing hash join... [4.40749s] Building seed filter... [0.069097s] Searching alignments... [114.022s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.61269s] Building query seed array... [2.45359s] Computing hash join... [4.54978s] Building seed filter... [0.065765s] Searching alignments... [99.3265s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.6153s] Building query seed array... [2.23718s] Computing hash join... [4.28873s] Building seed filter... [0.068009s] Searching alignments... [133.412s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.0776s] Building query seed array... [2.69102s] Computing hash join... [4.39757s] Building seed filter... [0.064893s] Searching alignments... [79.7382s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3223s] Building query seed array... [2.73296s] Computing hash join... [4.28344s] Building seed filter... [0.070556s] Searching alignments... [83.5031s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.55386s] Building query seed array... [2.18215s] Computing hash join... [4.31704s] Building seed filter... [0.066521s] Searching alignments... [93.2091s] Deallocating buffers... [0.124346s] Opening temporary output file... [0.001064s] Computing alignments... [349.731s] Deallocating reference... [0.063563s] Loading reference sequences... [16.6664s] Masking reference... [21.7449s] Initializing temporary storage... [0.005207s] Building reference histograms... [4.84482s] Allocating buffers... [0.000202s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.33713s] Building query seed array... [2.5455s] Computing hash join... [2.14259s] Building seed filter... [0.045147s] Searching alignments... [76.7057s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23769s] Building query seed array... [2.88006s] Computing hash join... [2.21631s] Building seed filter... [0.038087s] Searching alignments... [57.9008s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.38758s] Building query seed array... [2.9855s] Computing hash join... [2.20486s] Building seed filter... [0.046615s] Searching alignments... [50.5082s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.38873s] Building query seed array... [2.39905s] Computing hash join... [2.24039s] Building seed filter... [0.040727s] Searching alignments... [44.998s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.23354s] Building query seed array... [2.19292s] Computing hash join... [2.0716s] Building seed filter... [0.041623s] Searching alignments... [45.6663s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.18474s] Building query seed array... [2.66791s] Computing hash join... [2.11387s] Building seed filter... [0.037772s] Searching alignments... [34.2279s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.35397s] Building query seed array... [2.69301s] Computing hash join... [2.1323s] Building seed filter... [0.038819s] Searching alignments... [39.3283s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23098s] Building query seed array... [2.18659s] Computing hash join... [2.0461s] Building seed filter... [0.042087s] Searching alignments... [33.8071s] Deallocating buffers... [0.045603s] Opening temporary output file... [0.030878s] Computing alignments... [170.549s] Deallocating reference... [0.029051s] Loading reference sequences... [0.022397s] Deallocating buffers... [0.018168s] Joining output blocks... [264.421s] Deallocating queries... [0.048625s] Loading query sequences... [3.8e-05s] Closing the input file... [5.8e-05s] Closing the output file... [0.361211s] Closing the database file... [3.7e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 10698.2s Reported 2131065706 pairwise alignments, 2131162451 HSPs. 4700674 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.102863s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.106494s] Opening the output file... [0.000339s] Loading query sequences... [85.5075s] Masking queries... [50.0409s] Building query seed set... [0.393703s] Algorithm: Double-indexed Building query histograms... [3.03421s] Allocating buffers... [0.00071s] Loading reference sequences... [45.8732s] Masking reference... [59.0466s] Initializing temporary storage... [0.004497s] Building reference histograms... [13.3278s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.97688s] Building query seed array... [2.04694s] Computing hash join... [4.25725s] Building seed filter... [0.074497s] Searching alignments... [103.979s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2829s] Building query seed array... [2.39661s] Computing hash join... [4.27777s] Building seed filter... [0.06387s] Searching alignments... [48.504s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5555s] Building query seed array... [2.51796s] Computing hash join... [4.26149s] Building seed filter... [0.07204s] Searching alignments... [44.2545s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.66165s] Building query seed array... [2.02489s] Computing hash join... [4.24576s] Building seed filter... [0.068404s] Searching alignments... [45.5962s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.62144s] Building query seed array... [1.84909s] Computing hash join... [4.13568s] Building seed filter... [0.062022s] Searching alignments... [94.9718s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1467s] Building query seed array... [2.20915s] Computing hash join... [4.13632s] Building seed filter... [0.067721s] Searching alignments... [35.2243s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3844s] Building query seed array... [2.23185s] Computing hash join... [4.09906s] Building seed filter... [0.064425s] Searching alignments... [41.032s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.56122s] Building query seed array... [1.8398s] Computing hash join... [4.12329s] Building seed filter... [0.067358s] Searching alignments... [28.4052s] Deallocating buffers... [0.107347s] Opening temporary output file... [0.00097s] Computing alignments... [129.448s] Deallocating reference... [0.093968s] Loading reference sequences... [409.408s] Masking reference... [57.8989s] Initializing temporary storage... [0.005134s] Building reference histograms... [12.478s] Allocating buffers... [0.000187s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.07124s] Building query seed array... [2.10738s] Computing hash join... [4.26385s] Building seed filter... [0.078108s] Searching alignments... [90.6249s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2815s] Building query seed array... [2.38089s] Computing hash join... [4.25493s] Building seed filter... [0.069172s] Searching alignments... [38.0696s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5291s] Building query seed array... [2.50898s] Computing hash join... [4.27769s] Building seed filter... [0.0671s] Searching alignments... [36.78s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.67933s] Building query seed array... [1.9967s] Computing hash join... [4.29993s] Building seed filter... [0.068417s] Searching alignments... [36.4016s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.68796s] Building query seed array... [2.12288s] Computing hash join... [4.13377s] Building seed filter... [0.068689s] Searching alignments... [134.211s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.6298s] Building query seed array... [2.25967s] Computing hash join... [4.22466s] Building seed filter... [0.068918s] Searching alignments... [27.2598s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.403s] Building query seed array... [2.2051s] Computing hash join... [4.12758s] Building seed filter... [0.068798s] Searching alignments... [35.6531s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.50727s] Building query seed array... [1.85463s] Computing hash join... [4.06088s] Building seed filter... [0.071638s] Searching alignments... [24.0959s] Deallocating buffers... [0.105941s] Opening temporary output file... [0.001121s] Computing alignments... [94.5507s] Deallocating reference... [0.081818s] Loading reference sequences... [409.558s] Masking reference... [57.6785s] Initializing temporary storage... [0.03931s] Building reference histograms... [12.783s] Allocating buffers... [0.000186s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.97802s] Building query seed array... [2.08732s] Computing hash join... [4.31473s] Building seed filter... [0.07945s] Searching alignments... [89.3462s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.4213s] Building query seed array... [2.45703s] Computing hash join... [4.45657s] Building seed filter... [0.080574s] Searching alignments... [47.4976s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4654s] Building query seed array... [2.5261s] Computing hash join... [4.22429s] Building seed filter... [0.06927s] Searching alignments... [40.1778s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.6826s] Building query seed array... [2.01745s] Computing hash join... [4.21129s] Building seed filter... [0.07907s] Searching alignments... [39.3619s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.65044s] Building query seed array... [1.86491s] Computing hash join... [4.15086s] Building seed filter... [0.060655s] Searching alignments... [117.385s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1237s] Building query seed array... [2.27554s] Computing hash join... [4.15931s] Building seed filter... [0.066909s] Searching alignments... [29.6023s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4215s] Building query seed array... [2.32427s] Computing hash join... [4.10431s] Building seed filter... [0.062704s] Searching alignments... [36.3803s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.86792s] Building query seed array... [1.90128s] Computing hash join... [4.13969s] Building seed filter... [0.071748s] Searching alignments... [26.6171s] Deallocating buffers... [0.120956s] Opening temporary output file... [0.000455s] Computing alignments... [120.301s] Deallocating reference... [0.08604s] Loading reference sequences... [395.813s] Masking reference... [58.2376s] Initializing temporary storage... [0.005228s] Building reference histograms... [12.6564s] Allocating buffers... [0.000188s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.99894s] Building query seed array... [2.01831s] Computing hash join... [4.21229s] Building seed filter... [0.080981s] Searching alignments... [90.1192s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3263s] Building query seed array... [2.48558s] Computing hash join... [4.27558s] Building seed filter... [0.063629s] Searching alignments... [42.2339s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.654s] Building query seed array... [2.55192s] Computing hash join... [4.19414s] Building seed filter... [0.071672s] Searching alignments... [32.6812s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.77107s] Building query seed array... [2.00333s] Computing hash join... [4.35069s] Building seed filter... [0.072984s] Searching alignments... [53.7351s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.66027s] Building query seed array... [1.83714s] Computing hash join... [4.12721s] Building seed filter... [0.0679s] Searching alignments... [112.143s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2275s] Building query seed array... [2.26367s] Computing hash join... [4.22116s] Building seed filter... [0.06242s] Searching alignments... [26.8063s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3813s] Building query seed array... [2.23919s] Computing hash join... [4.15841s] Building seed filter... [0.067409s] Searching alignments... [35.3207s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.66846s] Building query seed array... [1.86187s] Computing hash join... [4.11984s] Building seed filter... [0.067315s] Searching alignments... [22.2173s] Deallocating buffers... [0.112238s] Opening temporary output file... [0.001207s] Computing alignments... [94.5777s] Deallocating reference... [0.081477s] Loading reference sequences... [359.121s] Masking reference... [57.6438s] Initializing temporary storage... [0.004154s] Building reference histograms... [12.5949s] Allocating buffers... [0.000189s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.03949s] Building query seed array... [2.01008s] Computing hash join... [4.27764s] Building seed filter... [0.074433s] Searching alignments... [84.9607s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.3167s] Building query seed array... [2.45663s] Computing hash join... [4.27922s] Building seed filter... [0.069s] Searching alignments... [34.8949s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.3959s] Building query seed array... [2.47202s] Computing hash join... [4.33793s] Building seed filter... [0.072619s] Searching alignments... [35.4008s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.60763s] Building query seed array... [2.07048s] Computing hash join... [4.23559s] Building seed filter... [0.077378s] Searching alignments... [35.2549s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.65365s] Building query seed array... [1.86879s] Computing hash join... [4.10473s] Building seed filter... [0.061777s] Searching alignments... [100.34s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2008s] Building query seed array... [2.17923s] Computing hash join... [4.20104s] Building seed filter... [0.065196s] Searching alignments... [25.0013s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3126s] Building query seed array... [2.24405s] Computing hash join... [4.09206s] Building seed filter... [0.064478s] Searching alignments... [35.0314s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.62616s] Building query seed array... [1.81411s] Computing hash join... [4.10342s] Building seed filter... [0.082192s] Searching alignments... [22.804s] Deallocating buffers... [0.120277s] Opening temporary output file... [0.001606s] Computing alignments... [88.2678s] Deallocating reference... [0.081241s] Loading reference sequences... [16.8212s] Masking reference... [21.7227s] Initializing temporary storage... [0.004586s] Building reference histograms... [4.72584s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.2522s] Building query seed array... [2.01661s] Computing hash join... [1.91493s] Building seed filter... [0.040609s] Searching alignments... [34.9814s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.28025s] Building query seed array... [2.37992s] Computing hash join... [1.9835s] Building seed filter... [0.037827s] Searching alignments... [18.8802s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.36483s] Building query seed array... [2.48159s] Computing hash join... [1.95695s] Building seed filter... [0.037455s] Searching alignments... [15.1199s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25835s] Building query seed array... [1.9982s] Computing hash join... [1.99499s] Building seed filter... [0.043226s] Searching alignments... [15.3698s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26061s] Building query seed array... [1.82026s] Computing hash join... [1.884s] Building seed filter... [0.035456s] Searching alignments... [30.2846s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.32758s] Building query seed array... [2.23979s] Computing hash join... [1.93659s] Building seed filter... [0.035012s] Searching alignments... [11.1671s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.24261s] Building query seed array... [2.23885s] Computing hash join... [1.8616s] Building seed filter... [0.036108s] Searching alignments... [14.4248s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.24454s] Building query seed array... [1.80359s] Computing hash join... [1.89775s] Building seed filter... [0.041711s] Searching alignments... [10.1376s] Deallocating buffers... [0.042892s] Opening temporary output file... [0.028328s] Computing alignments... [58.1032s] Deallocating reference... [0.028185s] Loading reference sequences... [4.5e-05s] Deallocating buffers... [0.015321s] Joining output blocks... [76.4489s] Deallocating queries... [0.042391s] Loading query sequences... [3.1e-05s] Closing the input file... [5.4e-05s] Closing the output file... [0.412844s] Closing the database file... [3.5e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 5773.97s Reported 348921242 pairwise alignments, 348951455 HSPs. 1994079 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.061198s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.058206s] Opening the output file... [0.000961s] Loading query sequences... [84.7252s] Masking queries... [53.3037s] Building query seed set... [0.393944s] Algorithm: Double-indexed Building query histograms... [3.05781s] Allocating buffers... [0.000684s] Loading reference sequences... [47.1909s] Masking reference... [59.2111s] Initializing temporary storage... [0.005944s] Building reference histograms... [12.6446s] Allocating buffers... [0.000196s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.96924s] Building query seed array... [2.06568s] Computing hash join... [4.35278s] Building seed filter... [0.076139s] Searching alignments... [100.035s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2634s] Building query seed array... [2.37733s] Computing hash join... [4.32436s] Building seed filter... [0.071218s] Searching alignments... [47.0672s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5892s] Building query seed array... [2.44403s] Computing hash join... [4.37242s] Building seed filter... [0.070509s] Searching alignments... [44.5225s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.64567s] Building query seed array... [2.02482s] Computing hash join... [4.28172s] Building seed filter... [0.0739s] Searching alignments... [45.4254s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.59209s] Building query seed array... [1.8364s] Computing hash join... [4.16723s] Building seed filter... [0.069363s] Searching alignments... [93.5693s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2523s] Building query seed array... [2.17465s] Computing hash join... [4.28874s] Building seed filter... [0.072041s] Searching alignments... [34.9601s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.5366s] Building query seed array... [2.29942s] Computing hash join... [4.19219s] Building seed filter... [0.067714s] Searching alignments... [40.5583s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.614s] Building query seed array... [1.81223s] Computing hash join... [4.11351s] Building seed filter... [0.076716s] Searching alignments... [27.8105s] Deallocating buffers... [0.12061s] Opening temporary output file... [0.000952s] Computing alignments... [126.327s] Deallocating reference... [0.095591s] Loading reference sequences... [401.812s] Masking reference... [58.6982s] Initializing temporary storage... [0.00522s] Building reference histograms... [13.1221s] Allocating buffers... [0.000208s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.93829s] Building query seed array... [2.00674s] Computing hash join... [4.29348s] Building seed filter... [0.077728s] Searching alignments... [86.324s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3277s] Building query seed array... [2.48725s] Computing hash join... [4.35276s] Building seed filter... [0.078808s] Searching alignments... [37.8317s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.661s] Building query seed array... [2.55421s] Computing hash join... [4.2556s] Building seed filter... [0.077818s] Searching alignments... [37.0729s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.00169s] Building query seed array... [2.15007s] Computing hash join... [4.25581s] Building seed filter... [0.085346s] Searching alignments... [36.1516s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.17157s] Building query seed array... [1.92288s] Computing hash join... [4.17449s] Building seed filter... [0.075383s] Searching alignments... [131.459s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1269s] Building query seed array... [2.28226s] Computing hash join... [4.24882s] Building seed filter... [0.069517s] Searching alignments... [26.5113s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.411s] Building query seed array... [2.34039s] Computing hash join... [4.16809s] Building seed filter... [0.068138s] Searching alignments... [35.658s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.6193s] Building query seed array... [1.81302s] Computing hash join... [4.10274s] Building seed filter... [0.07465s] Searching alignments... [24.4165s] Deallocating buffers... [0.116126s] Opening temporary output file... [0.00113s] Computing alignments... [93.7803s] Deallocating reference... [0.088561s] Loading reference sequences... [402.213s] Masking reference... [57.5032s] Initializing temporary storage... [0.004147s] Building reference histograms... [12.2112s] Allocating buffers... [0.000195s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.07555s] Building query seed array... [2.08554s] Computing hash join... [4.2102s] Building seed filter... [0.075229s] Searching alignments... [88.2465s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.636s] Building query seed array... [2.51918s] Computing hash join... [4.22442s] Building seed filter... [0.069167s] Searching alignments... [43.6729s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5686s] Building query seed array... [2.56701s] Computing hash join... [4.32167s] Building seed filter... [0.07395s] Searching alignments... [40.5857s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.76366s] Building query seed array... [2.07582s] Computing hash join... [4.26177s] Building seed filter... [0.073847s] Searching alignments... [39.3832s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.6533s] Building query seed array... [1.90938s] Computing hash join... [4.12878s] Building seed filter... [0.071318s] Searching alignments... [115.488s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1982s] Building query seed array... [2.25956s] Computing hash join... [4.22973s] Building seed filter... [0.079544s] Searching alignments... [30.0302s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4456s] Building query seed array... [2.29442s] Computing hash join... [4.13523s] Building seed filter... [0.072973s] Searching alignments... [35.0621s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.58075s] Building query seed array... [1.84963s] Computing hash join... [4.10715s] Building seed filter... [0.073942s] Searching alignments... [26.6018s] Deallocating buffers... [0.089982s] Opening temporary output file... [0.000923s] Computing alignments... [119.237s] Deallocating reference... [0.069787s] Loading reference sequences... [369.018s] Masking reference... [57.582s] Initializing temporary storage... [0.004084s] Building reference histograms... [13.2542s] Allocating buffers... [0.000192s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.09044s] Building query seed array... [2.00373s] Computing hash join... [4.26225s] Building seed filter... [0.079067s] Searching alignments... [87.4161s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.332s] Building query seed array... [2.4728s] Computing hash join... [4.30481s] Building seed filter... [0.078379s] Searching alignments... [41.4378s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5414s] Building query seed array... [2.50188s] Computing hash join... [4.30737s] Building seed filter... [0.08577s] Searching alignments... [33.255s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.67701s] Building query seed array... [2.03461s] Computing hash join... [4.25032s] Building seed filter... [0.07337s] Searching alignments... [35.7597s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.79233s] Building query seed array... [1.90136s] Computing hash join... [4.18434s] Building seed filter... [0.065359s] Searching alignments... [109.85s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2382s] Building query seed array... [2.21288s] Computing hash join... [4.2418s] Building seed filter... [0.070103s] Searching alignments... [25.8619s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.9184s] Building query seed array... [2.31885s] Computing hash join... [4.23842s] Building seed filter... [0.074478s] Searching alignments... [38.6082s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.79133s] Building query seed array... [1.90653s] Computing hash join... [4.10566s] Building seed filter... [0.065732s] Searching alignments... [21.973s] Deallocating buffers... [0.10917s] Opening temporary output file... [0.000983s] Computing alignments... [93.995s] Deallocating reference... [0.082398s] Loading reference sequences... [364.537s] Masking reference... [58.0444s] Initializing temporary storage... [0.004098s] Building reference histograms... [12.8645s] Allocating buffers... [0.000194s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.2924s] Building query seed array... [2.09371s] Computing hash join... [4.27215s] Building seed filter... [0.072909s] Searching alignments... [84.2193s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.3699s] Building query seed array... [2.4236s] Computing hash join... [4.31869s] Building seed filter... [0.081394s] Searching alignments... [35.0442s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.3744s] Building query seed array... [2.47765s] Computing hash join... [4.27783s] Building seed filter... [0.082129s] Searching alignments... [35.1488s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.60913s] Building query seed array... [2.04781s] Computing hash join... [4.36006s] Building seed filter... [0.085377s] Searching alignments... [34.4559s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.70246s] Building query seed array... [1.85366s] Computing hash join... [4.14047s] Building seed filter... [0.07468s] Searching alignments... [98.842s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.171s] Building query seed array... [2.17847s] Computing hash join... [4.26861s] Building seed filter... [0.080113s] Searching alignments... [24.9451s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.354s] Building query seed array... [2.23644s] Computing hash join... [4.12503s] Building seed filter... [0.072069s] Searching alignments... [34.1497s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.54921s] Building query seed array... [1.87743s] Computing hash join... [4.15606s] Building seed filter... [0.08239s] Searching alignments... [22.6455s] Deallocating buffers... [0.123449s] Opening temporary output file... [0.00147s] Computing alignments... [85.0035s] Deallocating reference... [0.063498s] Loading reference sequences... [16.7376s] Masking reference... [21.3479s] Initializing temporary storage... [0.003622s] Building reference histograms... [4.85495s] Allocating buffers... [0.000188s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.32488s] Building query seed array... [2.13892s] Computing hash join... [1.95502s] Building seed filter... [0.043785s] Searching alignments... [33.4713s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21624s] Building query seed array... [2.41016s] Computing hash join... [1.98711s] Building seed filter... [0.040162s] Searching alignments... [16.8377s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.32557s] Building query seed array... [2.46921s] Computing hash join... [2.02967s] Building seed filter... [0.039252s] Searching alignments... [14.9847s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.28414s] Building query seed array... [2.01372s] Computing hash join... [1.97218s] Building seed filter... [0.044644s] Searching alignments... [15.3235s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.28925s] Building query seed array... [1.82708s] Computing hash join... [1.86174s] Building seed filter... [0.041074s] Searching alignments... [30.4694s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.20886s] Building query seed array... [2.17115s] Computing hash join... [1.92943s] Building seed filter... [0.038817s] Searching alignments... [11.4945s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.32687s] Building query seed array... [2.20857s] Computing hash join... [1.86519s] Building seed filter... [0.040672s] Searching alignments... [14.1342s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.21712s] Building query seed array... [1.83116s] Computing hash join... [1.86431s] Building seed filter... [0.037932s] Searching alignments... [9.96461s] Deallocating buffers... [0.042302s] Opening temporary output file... [0.019557s] Computing alignments... [57.7992s] Deallocating reference... [0.028426s] Loading reference sequences... [4.7e-05s] Deallocating buffers... [0.014901s] Joining output blocks... [72.4993s] Deallocating queries... [0.036948s] Loading query sequences... [2.9e-05s] Closing the input file... [4.7e-05s] Closing the output file... [0.235562s] Closing the database file... [2.9e-05s] Deallocating taxonomy... [1.9e-05s] Total time = 5680.3s Reported 341005991 pairwise alignments, 341034304 HSPs. 1986273 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.085493s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.088581s] Opening the output file... [0.000282s] Loading query sequences... [91.4091s] Masking queries... [66.5701s] Building query seed set... [0.41848s] Algorithm: Double-indexed Building query histograms... [2.41631s] Allocating buffers... [0.000682s] Loading reference sequences... [427.329s] Masking reference... [58.9705s] Initializing temporary storage... [0.00509s] Building reference histograms... [12.7089s] Allocating buffers... [0.000199s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.92043s] Building query seed array... [1.62473s] Computing hash join... [4.50463s] Building seed filter... [0.125226s] Searching alignments... [20.3437s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.277s] Building query seed array... [1.76229s] Computing hash join... [4.47734s] Building seed filter... [0.130205s] Searching alignments... [19.8901s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4828s] Building query seed array... [1.82463s] Computing hash join... [4.39938s] Building seed filter... [0.126303s] Searching alignments... [19.6053s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.63289s] Building query seed array... [1.56538s] Computing hash join... [4.41013s] Building seed filter... [0.123303s] Searching alignments... [17.6014s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.64277s] Building query seed array... [1.355s] Computing hash join... [4.29031s] Building seed filter... [0.109872s] Searching alignments... [14.0037s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1124s] Building query seed array... [1.54337s] Computing hash join... [4.28544s] Building seed filter... [0.114149s] Searching alignments... [17.2107s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3295s] Building query seed array... [1.60154s] Computing hash join... [4.28806s] Building seed filter... [0.112573s] Searching alignments... [13.9844s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.56991s] Building query seed array... [1.38055s] Computing hash join... [4.36028s] Building seed filter... [0.114815s] Searching alignments... [13.123s] Deallocating buffers... [0.117689s] Opening temporary output file... [0.000939s] Computing alignments... [64.4615s] Deallocating reference... [0.093216s] Loading reference sequences... [405.501s] Masking reference... [57.95s] Initializing temporary storage... [0.004312s] Building reference histograms... [12.7894s] Allocating buffers... [0.000196s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.016s] Building query seed array... [1.69626s] Computing hash join... [4.44231s] Building seed filter... [0.143705s] Searching alignments... [18.6306s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3032s] Building query seed array... [1.82389s] Computing hash join... [4.42631s] Building seed filter... [0.128933s] Searching alignments... [18.0936s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.737s] Building query seed array... [1.91993s] Computing hash join... [4.40381s] Building seed filter... [0.137139s] Searching alignments... [17.8111s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.68633s] Building query seed array... [1.51454s] Computing hash join... [4.38319s] Building seed filter... [0.127977s] Searching alignments... [16.8871s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.69263s] Building query seed array... [1.35006s] Computing hash join... [4.33491s] Building seed filter... [0.116232s] Searching alignments... [14.5642s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.4954s] Building query seed array... [1.65638s] Computing hash join... [4.27763s] Building seed filter... [0.121481s] Searching alignments... [14.4177s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.368s] Building query seed array... [1.71686s] Computing hash join... [4.30072s] Building seed filter... [0.118702s] Searching alignments... [13.0467s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.55271s] Building query seed array... [1.35214s] Computing hash join... [4.30014s] Building seed filter... [0.126757s] Searching alignments... [16.752s] Deallocating buffers... [0.115157s] Opening temporary output file... [0.001255s] Computing alignments... [60.1025s] Deallocating reference... [0.085333s] Loading reference sequences... [400.748s] Masking reference... [58.1518s] Initializing temporary storage... [0.004563s] Building reference histograms... [12.57s] Allocating buffers... [0.000212s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.96372s] Building query seed array... [1.60115s] Computing hash join... [4.45609s] Building seed filter... [0.12553s] Searching alignments... [19.5851s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2465s] Building query seed array... [1.81747s] Computing hash join... [4.40112s] Building seed filter... [0.120377s] Searching alignments... [18.7459s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4162s] Building query seed array... [1.90436s] Computing hash join... [4.40146s] Building seed filter... [0.124577s] Searching alignments... [18.5966s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.59433s] Building query seed array... [1.51303s] Computing hash join... [4.4035s] Building seed filter... [0.122388s] Searching alignments... [16.8727s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.6637s] Building query seed array... [1.3666s] Computing hash join... [4.31899s] Building seed filter... [0.126513s] Searching alignments... [21.3328s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1225s] Building query seed array... [1.62229s] Computing hash join... [4.28424s] Building seed filter... [0.127813s] Searching alignments... [15.0221s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4489s] Building query seed array... [1.68352s] Computing hash join... [4.29526s] Building seed filter... [0.122557s] Searching alignments... [14.2418s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.85935s] Building query seed array... [1.47052s] Computing hash join... [4.40746s] Building seed filter... [0.124485s] Searching alignments... [12.5459s] Deallocating buffers... [0.107758s] Opening temporary output file... [0.000926s] Computing alignments... [63.9121s] Deallocating reference... [0.070459s] Loading reference sequences... [374.543s] Masking reference... [57.9347s] Initializing temporary storage... [0.004561s] Building reference histograms... [12.1326s] Allocating buffers... [0.000188s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.85031s] Building query seed array... [1.67651s] Computing hash join... [4.47261s] Building seed filter... [0.131025s] Searching alignments... [18.7952s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.5909s] Building query seed array... [1.85561s] Computing hash join... [4.41305s] Building seed filter... [0.127422s] Searching alignments... [18.6115s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5688s] Building query seed array... [1.88163s] Computing hash join... [4.48347s] Building seed filter... [0.122048s] Searching alignments... [18.2105s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.67232s] Building query seed array... [1.61042s] Computing hash join... [4.4124s] Building seed filter... [0.127367s] Searching alignments... [16.8898s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.65561s] Building query seed array... [1.39662s] Computing hash join... [4.33629s] Building seed filter... [0.121848s] Searching alignments... [16.1264s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.3672s] Building query seed array... [1.63074s] Computing hash join... [4.35415s] Building seed filter... [0.122871s] Searching alignments... [14.5004s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3971s] Building query seed array... [1.64025s] Computing hash join... [4.28113s] Building seed filter... [0.123735s] Searching alignments... [16.5799s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.57339s] Building query seed array... [1.46386s] Computing hash join... [4.26463s] Building seed filter... [0.117315s] Searching alignments... [18.3619s] Deallocating buffers... [0.124561s] Opening temporary output file... [0.000552s] Computing alignments... [62.9098s] Deallocating reference... [0.064593s] Loading reference sequences... [370.851s] Masking reference... [57.9685s] Initializing temporary storage... [0.005177s] Building reference histograms... [12.3468s] Allocating buffers... [0.000209s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.01009s] Building query seed array... [1.59995s] Computing hash join... [4.48602s] Building seed filter... [0.127984s] Searching alignments... [18.8149s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2281s] Building query seed array... [1.84914s] Computing hash join... [4.49096s] Building seed filter... [0.12869s] Searching alignments... [20.1723s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4894s] Building query seed array... [1.83539s] Computing hash join... [4.51922s] Building seed filter... [0.125131s] Searching alignments... [18.3643s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.84167s] Building query seed array... [1.62145s] Computing hash join... [4.4223s] Building seed filter... [0.124297s] Searching alignments... [16.6154s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.59989s] Building query seed array... [1.35407s] Computing hash join... [4.29619s] Building seed filter... [0.116098s] Searching alignments... [16.2052s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.0933s] Building query seed array... [1.54168s] Computing hash join... [4.35872s] Building seed filter... [0.113569s] Searching alignments... [14.0148s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3331s] Building query seed array... [1.54973s] Computing hash join... [4.28729s] Building seed filter... [0.121066s] Searching alignments... [14.1462s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.52927s] Building query seed array... [1.36962s] Computing hash join... [4.29843s] Building seed filter... [0.12363s] Searching alignments... [16.2516s] Deallocating buffers... [0.119186s] Opening temporary output file... [0.000963s] Computing alignments... [60.3724s] Deallocating reference... [0.063689s] Loading reference sequences... [161.721s] Masking reference... [21.6721s] Initializing temporary storage... [0.005326s] Building reference histograms... [4.94957s] Allocating buffers... [0.000187s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.26394s] Building query seed array... [1.59115s] Computing hash join... [1.93569s] Building seed filter... [0.073796s] Searching alignments... [8.16338s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.30874s] Building query seed array... [1.76478s] Computing hash join... [1.91436s] Building seed filter... [0.068327s] Searching alignments... [7.96127s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30796s] Building query seed array... [1.82305s] Computing hash join... [1.90429s] Building seed filter... [0.064479s] Searching alignments... [8.06744s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25025s] Building query seed array... [1.53565s] Computing hash join... [1.89915s] Building seed filter... [0.064446s] Searching alignments... [7.16653s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25996s] Building query seed array... [1.396s] Computing hash join... [1.84218s] Building seed filter... [0.061082s] Searching alignments... [10.0004s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.17274s] Building query seed array... [1.61s] Computing hash join... [1.84093s] Building seed filter... [0.065385s] Searching alignments... [6.33774s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.28915s] Building query seed array... [1.55268s] Computing hash join... [1.843s] Building seed filter... [0.062825s] Searching alignments... [5.39265s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23208s] Building query seed array... [1.34761s] Computing hash join... [1.83527s] Building seed filter... [0.064822s] Searching alignments... [5.07922s] Deallocating buffers... [0.0425s] Opening temporary output file... [0.019912s] Computing alignments... [54.2168s] Deallocating reference... [0.029678s] Loading reference sequences... [4.8e-05s] Deallocating buffers... [0.007974s] Joining output blocks... [16.4157s] Deallocating queries... [0.05884s] Loading query sequences... [5.4e-05s] Closing the input file... [7.9e-05s] Closing the output file... [0.387241s] Closing the database file... [6.7e-05s] Deallocating taxonomy... [2.5e-05s] Total time = 4504.81s Reported 42745926 pairwise alignments, 42752502 HSPs. 467418 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.00019s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.068911s] Opening the output file... [0.00034s] Loading query sequences... [93.0615s] Masking queries... [66.1925s] Building query seed set... [0.368282s] Algorithm: Double-indexed Building query histograms... [2.40919s] Allocating buffers... [0.000696s] Loading reference sequences... [443.077s] Masking reference... [59.2456s] Initializing temporary storage... [0.003993s] Building reference histograms... [13.1661s] Allocating buffers... [0.000197s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.99651s] Building query seed array... [1.60011s] Computing hash join... [4.44781s] Building seed filter... [0.138152s] Searching alignments... [20.4764s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2179s] Building query seed array... [1.83911s] Computing hash join... [4.47833s] Building seed filter... [0.128054s] Searching alignments... [19.9257s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.497s] Building query seed array... [1.8236s] Computing hash join... [4.43356s] Building seed filter... [0.133271s] Searching alignments... [19.8786s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.67166s] Building query seed array... [1.49763s] Computing hash join... [4.44644s] Building seed filter... [0.132059s] Searching alignments... [17.6986s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.62317s] Building query seed array... [1.34371s] Computing hash join... [4.33433s] Building seed filter... [0.115325s] Searching alignments... [14.002s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1228s] Building query seed array... [1.53246s] Computing hash join... [4.35662s] Building seed filter... [0.113345s] Searching alignments... [17.7761s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3387s] Building query seed array... [1.59457s] Computing hash join... [4.30015s] Building seed filter... [0.117833s] Searching alignments... [14.083s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.57119s] Building query seed array... [1.39177s] Computing hash join... [4.29155s] Building seed filter... [0.115023s] Searching alignments... [13.367s] Deallocating buffers... [0.10868s] Opening temporary output file... [0.000994s] Computing alignments... [65.1428s] Deallocating reference... [0.100953s] Loading reference sequences... [406.543s] Masking reference... [57.716s] Initializing temporary storage... [0.004641s] Building reference histograms... [12.0213s] Allocating buffers... [0.000188s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.95863s] Building query seed array... [1.5915s] Computing hash join... [4.48085s] Building seed filter... [0.129659s] Searching alignments... [18.6009s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3149s] Building query seed array... [1.82682s] Computing hash join... [4.44717s] Building seed filter... [0.12455s] Searching alignments... [18.2413s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4513s] Building query seed array... [1.89265s] Computing hash join... [4.43787s] Building seed filter... [0.126984s] Searching alignments... [17.9706s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.6705s] Building query seed array... [1.54759s] Computing hash join... [4.44933s] Building seed filter... [0.131742s] Searching alignments... [17.0177s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.65334s] Building query seed array... [1.41022s] Computing hash join... [4.35806s] Building seed filter... [0.118006s] Searching alignments... [14.4699s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1973s] Building query seed array... [1.62171s] Computing hash join... [4.39965s] Building seed filter... [0.115524s] Searching alignments... [15.0643s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.373s] Building query seed array... [1.58418s] Computing hash join... [4.35433s] Building seed filter... [0.114563s] Searching alignments... [12.9551s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.57079s] Building query seed array... [1.44138s] Computing hash join... [4.44634s] Building seed filter... [0.115543s] Searching alignments... [17.1351s] Deallocating buffers... [0.125848s] Opening temporary output file... [0.001106s] Computing alignments... [60.9192s] Deallocating reference... [0.082679s] Loading reference sequences... [411.372s] Masking reference... [57.6926s] Initializing temporary storage... [0.004507s] Building reference histograms... [12.7209s] Allocating buffers... [0.000219s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.01304s] Building query seed array... [1.58921s] Computing hash join... [4.46381s] Building seed filter... [0.142451s] Searching alignments... [19.7017s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2695s] Building query seed array... [1.86145s] Computing hash join... [4.53033s] Building seed filter... [0.132934s] Searching alignments... [19.1921s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4573s] Building query seed array... [1.90485s] Computing hash join... [4.49015s] Building seed filter... [0.132401s] Searching alignments... [18.815s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.83801s] Building query seed array... [1.64171s] Computing hash join... [4.55669s] Building seed filter... [0.125317s] Searching alignments... [17.0424s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.66674s] Building query seed array... [1.39588s] Computing hash join... [4.44528s] Building seed filter... [0.121137s] Searching alignments... [21.5202s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2751s] Building query seed array... [1.65984s] Computing hash join... [4.34315s] Building seed filter... [0.126073s] Searching alignments... [15.3841s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3808s] Building query seed array... [1.70196s] Computing hash join... [4.3594s] Building seed filter... [0.11871s] Searching alignments... [14.1816s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.5384s] Building query seed array... [1.39843s] Computing hash join... [4.29043s] Building seed filter... [0.121332s] Searching alignments... [13.3167s] Deallocating buffers... [0.112096s] Opening temporary output file... [0.000919s] Computing alignments... [62.6746s] Deallocating reference... [0.088229s] Loading reference sequences... [376.145s] Masking reference... [57.8789s] Initializing temporary storage... [0.004536s] Building reference histograms... [12.1705s] Allocating buffers... [0.000182s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.97329s] Building query seed array... [1.60264s] Computing hash join... [4.49305s] Building seed filter... [0.130567s] Searching alignments... [18.8095s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3106s] Building query seed array... [1.84362s] Computing hash join... [4.53062s] Building seed filter... [0.131839s] Searching alignments... [18.9053s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5773s] Building query seed array... [1.88877s] Computing hash join... [4.50381s] Building seed filter... [0.126196s] Searching alignments... [18.4685s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.70231s] Building query seed array... [1.59667s] Computing hash join... [4.56496s] Building seed filter... [0.13618s] Searching alignments... [17.1846s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.70676s] Building query seed array... [1.38998s] Computing hash join... [4.42429s] Building seed filter... [0.118274s] Searching alignments... [16.6182s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1905s] Building query seed array... [1.66577s] Computing hash join... [4.3654s] Building seed filter... [0.123055s] Searching alignments... [14.5085s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.395s] Building query seed array... [1.59129s] Computing hash join... [4.40439s] Building seed filter... [0.12805s] Searching alignments... [16.4793s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.84611s] Building query seed array... [1.47956s] Computing hash join... [4.2987s] Building seed filter... [0.134991s] Searching alignments... [18.1569s] Deallocating buffers... [0.113897s] Opening temporary output file... [0.001116s] Computing alignments... [64.1336s] Deallocating reference... [0.083291s] Loading reference sequences... [383.749s] Masking reference... [57.9512s] Initializing temporary storage... [0.004648s] Building reference histograms... [12.6961s] Allocating buffers... [0.0002s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.01489s] Building query seed array... [1.59559s] Computing hash join... [4.6155s] Building seed filter... [0.147138s] Searching alignments... [18.6181s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.199s] Building query seed array... [1.79143s] Computing hash join... [4.4996s] Building seed filter... [0.137532s] Searching alignments... [20.5285s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4032s] Building query seed array... [1.81356s] Computing hash join... [4.46969s] Building seed filter... [0.134894s] Searching alignments... [18.5835s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.62345s] Building query seed array... [1.57629s] Computing hash join... [4.45496s] Building seed filter... [0.138399s] Searching alignments... [16.7963s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.02244s] Building query seed array... [1.48165s] Computing hash join... [4.42803s] Building seed filter... [0.121365s] Searching alignments... [15.8566s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.3452s] Building query seed array... [1.64151s] Computing hash join... [4.46156s] Building seed filter... [0.115937s] Searching alignments... [14.4459s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.7919s] Building query seed array... [1.68182s] Computing hash join... [4.36111s] Building seed filter... [0.124686s] Searching alignments... [14.1026s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.56503s] Building query seed array... [1.37592s] Computing hash join... [4.45647s] Building seed filter... [0.132735s] Searching alignments... [16.1701s] Deallocating buffers... [0.116163s] Opening temporary output file... [0.000591s] Computing alignments... [60.2117s] Deallocating reference... [0.062872s] Loading reference sequences... [164.856s] Masking reference... [21.7131s] Initializing temporary storage... [0.003875s] Building reference histograms... [4.52587s] Allocating buffers... [0.00019s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.2512s] Building query seed array... [1.57442s] Computing hash join... [1.93009s] Building seed filter... [0.071897s] Searching alignments... [8.17104s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.43215s] Building query seed array... [1.86861s] Computing hash join... [1.94073s] Building seed filter... [0.071653s] Searching alignments... [8.04168s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.28805s] Building query seed array... [1.8066s] Computing hash join... [1.93051s] Building seed filter... [0.070896s] Searching alignments... [8.12624s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26421s] Building query seed array... [1.6067s] Computing hash join... [1.96688s] Building seed filter... [0.066406s] Searching alignments... [7.40637s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25395s] Building query seed array... [1.40132s] Computing hash join... [1.83561s] Building seed filter... [0.062299s] Searching alignments... [9.83954s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.2532s] Building query seed array... [1.59361s] Computing hash join... [1.82836s] Building seed filter... [0.06893s] Searching alignments... [6.24027s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.26397s] Building query seed array... [1.61371s] Computing hash join... [1.86741s] Building seed filter... [0.066019s] Searching alignments... [5.43791s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.24405s] Building query seed array... [1.36691s] Computing hash join... [1.91393s] Building seed filter... [0.069954s] Searching alignments... [5.12926s] Deallocating buffers... [0.041952s] Opening temporary output file... [0.009448s] Computing alignments... [54.5686s] Deallocating reference... [0.030004s] Loading reference sequences... [4.8e-05s] Deallocating buffers... [0.00808s] Joining output blocks... [15.9609s] Deallocating queries... [0.047966s] Loading query sequences... [3.4e-05s] Closing the input file... [5.5e-05s] Closing the output file... [0.339939s] Closing the database file... [2.9e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 4561.75s Reported 42467113 pairwise alignments, 42471433 HSPs. 464824 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.051316s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.049419s] Opening the output file... [0.00034s] Loading query sequences... [89.8833s] Masking queries... [54.8212s] Building query seed set... [0.346654s] Algorithm: Double-indexed Building query histograms... [3.28075s] Allocating buffers... [0.000701s] Loading reference sequences... [46.8243s] Masking reference... [59.1641s] Initializing temporary storage... [0.00454s] Building reference histograms... [13.2312s] Allocating buffers... [9.4e-05s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.99123s] Building query seed array... [2.22503s] Computing hash join... [4.48128s] Building seed filter... [0.084713s] Searching alignments... [198.768s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2805s] Building query seed array... [2.64225s] Computing hash join... [4.35348s] Building seed filter... [0.070675s] Searching alignments... [194.499s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5605s] Building query seed array... [2.72535s] Computing hash join... [4.55762s] Building seed filter... [0.066638s] Searching alignments... [152.596s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.65373s] Building query seed array... [2.21366s] Computing hash join... [4.45825s] Building seed filter... [0.073572s] Searching alignments... [131.033s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.66781s] Building query seed array... [1.9858s] Computing hash join... [4.30398s] Building seed filter... [0.063459s] Searching alignments... [144.881s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1386s] Building query seed array... [2.39983s] Computing hash join... [4.2843s] Building seed filter... [0.06775s] Searching alignments... [97.9407s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3655s] Building query seed array... [2.47709s] Computing hash join... [4.25502s] Building seed filter... [0.064251s] Searching alignments... [121.197s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.60421s] Building query seed array... [2.00222s] Computing hash join... [4.2335s] Building seed filter... [0.068285s] Searching alignments... [108.063s] Deallocating buffers... [0.115952s] Opening temporary output file... [0.000485s] Computing alignments... [527.848s] Deallocating reference... [0.091408s] Loading reference sequences... [50.0491s] Masking reference... [58.2797s] Initializing temporary storage... [0.004524s] Building reference histograms... [12.4624s] Allocating buffers... [0.000188s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.92753s] Building query seed array... [2.21221s] Computing hash join... [4.42502s] Building seed filter... [0.075763s] Searching alignments... [161.671s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3102s] Building query seed array... [2.68988s] Computing hash join... [4.44939s] Building seed filter... [0.070858s] Searching alignments... [145.48s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5389s] Building query seed array... [2.76819s] Computing hash join... [4.41085s] Building seed filter... [0.069126s] Searching alignments... [134.745s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.64947s] Building query seed array... [2.26749s] Computing hash join... [4.48759s] Building seed filter... [0.069314s] Searching alignments... [106.719s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.7456s] Building query seed array... [2.03596s] Computing hash join... [4.21389s] Building seed filter... [0.067044s] Searching alignments... [109.485s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.6017s] Building query seed array... [2.46631s] Computing hash join... [4.30771s] Building seed filter... [0.07311s] Searching alignments... [76.7682s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.5002s] Building query seed array... [2.51031s] Computing hash join... [4.313s] Building seed filter... [0.069044s] Searching alignments... [91.1321s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.69996s] Building query seed array... [2.1445s] Computing hash join... [4.17778s] Building seed filter... [0.068964s] Searching alignments... [81.5263s] Deallocating buffers... [0.127252s] Opening temporary output file... [0.001014s] Computing alignments... [404.831s] Deallocating reference... [0.089159s] Loading reference sequences... [432.513s] Masking reference... [57.5693s] Initializing temporary storage... [0.004541s] Building reference histograms... [11.8902s] Allocating buffers... [0.000194s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.87558s] Building query seed array... [2.19755s] Computing hash join... [4.39707s] Building seed filter... [0.071205s] Searching alignments... [188.432s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3417s] Building query seed array... [2.70845s] Computing hash join... [4.42855s] Building seed filter... [0.065254s] Searching alignments... [163.893s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5568s] Building query seed array... [2.74407s] Computing hash join... [4.46738s] Building seed filter... [0.077061s] Searching alignments... [136.487s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.79994s] Building query seed array... [2.25037s] Computing hash join... [4.51877s] Building seed filter... [0.071046s] Searching alignments... [120.831s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.6888s] Building query seed array... [1.99299s] Computing hash join... [4.30524s] Building seed filter... [0.0704s] Searching alignments... [115.832s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2698s] Building query seed array... [2.4892s] Computing hash join... [4.29134s] Building seed filter... [0.066629s] Searching alignments... [87.2858s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3739s] Building query seed array... [2.44813s] Computing hash join... [4.20074s] Building seed filter... [0.064303s] Searching alignments... [106.897s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.67621s] Building query seed array... [1.97426s] Computing hash join... [4.2192s] Building seed filter... [0.076404s] Searching alignments... [95.1805s] Deallocating buffers... [0.124962s] Opening temporary output file... [0.001182s] Computing alignments... [503.569s] Deallocating reference... [0.070182s] Loading reference sequences... [390.93s] Masking reference... [57.6093s] Initializing temporary storage... [0.004659s] Building reference histograms... [12.7002s] Allocating buffers... [0.000187s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.97973s] Building query seed array... [2.25941s] Computing hash join... [4.43007s] Building seed filter... [0.078441s] Searching alignments... [180.075s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3186s] Building query seed array... [2.70046s] Computing hash join... [4.48541s] Building seed filter... [0.068332s] Searching alignments... [132.519s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4945s] Building query seed array... [2.79527s] Computing hash join... [4.43324s] Building seed filter... [0.071525s] Searching alignments... [105.565s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.67928s] Building query seed array... [2.26106s] Computing hash join... [4.40435s] Building seed filter... [0.076102s] Searching alignments... [108.911s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.85301s] Building query seed array... [2.11491s] Computing hash join... [4.26823s] Building seed filter... [0.073286s] Searching alignments... [93.9639s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.4503s] Building query seed array... [2.47674s] Computing hash join... [4.2844s] Building seed filter... [0.069343s] Searching alignments... [74.234s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.7824s] Building query seed array... [2.54929s] Computing hash join... [4.34751s] Building seed filter... [0.064045s] Searching alignments... [83.5136s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.56529s] Building query seed array... [2.00458s] Computing hash join... [4.25754s] Building seed filter... [0.06667s] Searching alignments... [67.4153s] Deallocating buffers... [0.12515s] Opening temporary output file... [0.000931s] Computing alignments... [381.176s] Deallocating reference... [0.079647s] Loading reference sequences... [371.879s] Masking reference... [57.8254s] Initializing temporary storage... [0.003974s] Building reference histograms... [12.1088s] Allocating buffers... [0.00019s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.10783s] Building query seed array... [2.27627s] Computing hash join... [4.48256s] Building seed filter... [0.085732s] Searching alignments... [143.767s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.5931s] Building query seed array... [2.75474s] Computing hash join... [4.47017s] Building seed filter... [0.072539s] Searching alignments... [117.183s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4512s] Building query seed array... [2.68746s] Computing hash join... [4.45805s] Building seed filter... [0.084969s] Searching alignments... [106.536s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.70794s] Building query seed array... [2.21121s] Computing hash join... [4.4213s] Building seed filter... [0.073517s] Searching alignments... [96.0311s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.65772s] Building query seed array... [2.03666s] Computing hash join... [4.32019s] Building seed filter... [0.073168s] Searching alignments... [84.0606s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2266s] Building query seed array... [2.42596s] Computing hash join... [4.26468s] Building seed filter... [0.072487s] Searching alignments... [72.5053s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3336s] Building query seed array... [2.49136s] Computing hash join... [4.26619s] Building seed filter... [0.072899s] Searching alignments... [80.5906s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.08908s] Building query seed array... [2.10532s] Computing hash join... [4.24033s] Building seed filter... [0.073831s] Searching alignments... [68.6643s] Deallocating buffers... [0.122254s] Opening temporary output file... [0.000974s] Computing alignments... [362.625s] Deallocating reference... [0.062699s] Loading reference sequences... [16.6122s] Masking reference... [21.731s] Initializing temporary storage... [0.004079s] Building reference histograms... [4.70484s] Allocating buffers... [0.000184s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.31253s] Building query seed array... [2.19569s] Computing hash join... [2.10433s] Building seed filter... [0.048973s] Searching alignments... [60.6919s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23647s] Building query seed array... [2.65515s] Computing hash join... [2.12285s] Building seed filter... [0.04078s] Searching alignments... [58.6129s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.3804s] Building query seed array... [2.71968s] Computing hash join... [2.20688s] Building seed filter... [0.046929s] Searching alignments... [46.7361s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25025s] Building query seed array... [2.20676s] Computing hash join... [2.14679s] Building seed filter... [0.049914s] Searching alignments... [42.2343s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25337s] Building query seed array... [2.00356s] Computing hash join... [2.01575s] Building seed filter... [0.038804s] Searching alignments... [46.6501s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.21405s] Building query seed array... [2.42945s] Computing hash join... [2.09717s] Building seed filter... [0.045603s] Searching alignments... [30.3364s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.28179s] Building query seed array... [2.46854s] Computing hash join... [2.01961s] Building seed filter... [0.039075s] Searching alignments... [62.6832s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23019s] Building query seed array... [2.01109s] Computing hash join... [1.98996s] Building seed filter... [0.045944s] Searching alignments... [32.9459s] Deallocating buffers... [0.045129s] Opening temporary output file... [0.012641s] Computing alignments... [172.152s] Deallocating reference... [0.028892s] Loading reference sequences... [0.0675s] Deallocating buffers... [0.022166s] Joining output blocks... [298.67s] Deallocating queries... [0.046711s] Loading query sequences... [3.1e-05s] Closing the input file... [5.5e-05s] Closing the output file... [0.529935s] Closing the database file... [3.6e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 10299.5s Reported 1873163092 pairwise alignments, 1873303624 HSPs. 5582565 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.077706s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.10497s] Opening the output file... [0.000725s] Loading query sequences... [90.4367s] Masking queries... [56.0545s] Building query seed set... [0.352637s] Algorithm: Double-indexed Building query histograms... [3.41344s] Allocating buffers... [0.000698s] Loading reference sequences... [46.1696s] Masking reference... [59.0784s] Initializing temporary storage... [0.00447s] Building reference histograms... [12.8948s] Allocating buffers... [0.000197s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.11035s] Building query seed array... [2.31728s] Computing hash join... [4.42864s] Building seed filter... [0.076526s] Searching alignments... [199.86s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2594s] Building query seed array... [2.63315s] Computing hash join... [4.43745s] Building seed filter... [0.071696s] Searching alignments... [164.168s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5744s] Building query seed array... [2.66973s] Computing hash join... [4.45553s] Building seed filter... [0.077248s] Searching alignments... [146.646s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.62123s] Building query seed array... [2.2139s] Computing hash join... [4.44835s] Building seed filter... [0.073511s] Searching alignments... [121.762s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.63156s] Building query seed array... [2.03649s] Computing hash join... [4.30241s] Building seed filter... [0.071054s] Searching alignments... [194.583s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2143s] Building query seed array... [2.41385s] Computing hash join... [4.29522s] Building seed filter... [0.080638s] Searching alignments... [101.423s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3582s] Building query seed array... [2.47304s] Computing hash join... [4.24807s] Building seed filter... [0.072291s] Searching alignments... [117.4s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.58894s] Building query seed array... [1.98793s] Computing hash join... [4.25292s] Building seed filter... [0.081723s] Searching alignments... [107.96s] Deallocating buffers... [0.119206s] Opening temporary output file... [0.000581s] Computing alignments... [493.975s] Deallocating reference... [0.096081s] Loading reference sequences... [49.7198s] Masking reference... [58.117s] Initializing temporary storage... [0.004555s] Building reference histograms... [11.9887s] Allocating buffers... [0.000189s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.98053s] Building query seed array... [2.23827s] Computing hash join... [4.41297s] Building seed filter... [0.078242s] Searching alignments... [161.937s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.8009s] Building query seed array... [2.74477s] Computing hash join... [4.43776s] Building seed filter... [0.073624s] Searching alignments... [130.544s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5487s] Building query seed array... [2.75258s] Computing hash join... [4.40067s] Building seed filter... [0.080234s] Searching alignments... [116.627s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.60152s] Building query seed array... [2.21037s] Computing hash join... [4.43837s] Building seed filter... [0.077813s] Searching alignments... [104.055s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.63358s] Building query seed array... [2.03973s] Computing hash join... [4.2222s] Building seed filter... [0.065058s] Searching alignments... [143.347s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2409s] Building query seed array... [2.43887s] Computing hash join... [4.24111s] Building seed filter... [0.069307s] Searching alignments... [77.1495s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.7325s] Building query seed array... [2.52454s] Computing hash join... [4.32177s] Building seed filter... [0.064604s] Searching alignments... [90.2924s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.6024s] Building query seed array... [2.08097s] Computing hash join... [4.17248s] Building seed filter... [0.072116s] Searching alignments... [81.7881s] Deallocating buffers... [0.114201s] Opening temporary output file... [0.000669s] Computing alignments... [379.298s] Deallocating reference... [0.071923s] Loading reference sequences... [41.6571s] Masking reference... [57.7548s] Initializing temporary storage... [0.004546s] Building reference histograms... [12.1644s] Allocating buffers... [0.00021s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.99131s] Building query seed array... [2.27571s] Computing hash join... [4.41266s] Building seed filter... [0.074842s] Searching alignments... [191.375s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.4444s] Building query seed array... [2.69175s] Computing hash join... [4.42176s] Building seed filter... [0.06706s] Searching alignments... [153.692s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5565s] Building query seed array... [2.78567s] Computing hash join... [4.38932s] Building seed filter... [0.07459s] Searching alignments... [135.29s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.67836s] Building query seed array... [2.24788s] Computing hash join... [4.41678s] Building seed filter... [0.070608s] Searching alignments... [118.242s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.63641s] Building query seed array... [2.01524s] Computing hash join... [4.28682s] Building seed filter... [0.063628s] Searching alignments... [149.906s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.5763s] Building query seed array... [2.46721s] Computing hash join... [4.28991s] Building seed filter... [0.064906s] Searching alignments... [89.6438s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.5852s] Building query seed array... [2.54335s] Computing hash join... [4.26874s] Building seed filter... [0.067726s] Searching alignments... [106.729s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.77382s] Building query seed array... [2.09808s] Computing hash join... [4.2939s] Building seed filter... [0.069197s] Searching alignments... [96.1177s] Deallocating buffers... [0.122482s] Opening temporary output file... [0.000547s] Computing alignments... [479.235s] Deallocating reference... [0.071021s] Loading reference sequences... [39.8244s] Masking reference... [57.7934s] Initializing temporary storage... [0.004607s] Building reference histograms... [12.0641s] Allocating buffers... [0.000201s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.8964s] Building query seed array... [2.21138s] Computing hash join... [4.39086s] Building seed filter... [0.076661s] Searching alignments... [179.635s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3186s] Building query seed array... [2.63373s] Computing hash join... [4.42037s] Building seed filter... [0.075697s] Searching alignments... [130.836s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4971s] Building query seed array... [2.71134s] Computing hash join... [4.36521s] Building seed filter... [0.073715s] Searching alignments... [102.698s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.67941s] Building query seed array... [2.24235s] Computing hash join... [4.47543s] Building seed filter... [0.071957s] Searching alignments... [103.186s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.65292s] Building query seed array... [1.98503s] Computing hash join... [4.25632s] Building seed filter... [0.07076s] Searching alignments... [95.0201s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2563s] Building query seed array... [2.4854s] Computing hash join... [4.34286s] Building seed filter... [0.067315s] Searching alignments... [75.5126s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.6733s] Building query seed array... [2.50746s] Computing hash join... [4.24317s] Building seed filter... [0.081823s] Searching alignments... [82.004s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.62236s] Building query seed array... [1.96579s] Computing hash join... [4.19839s] Building seed filter... [0.071252s] Searching alignments... [66.8129s] Deallocating buffers... [0.12083s] Opening temporary output file... [0.001094s] Computing alignments... [366.138s] Deallocating reference... [0.065725s] Loading reference sequences... [39.3384s] Masking reference... [57.9614s] Initializing temporary storage... [0.005207s] Building reference histograms... [12.9823s] Allocating buffers... [0.000216s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.55322s] Building query seed array... [2.28178s] Computing hash join... [4.39482s] Building seed filter... [0.074812s] Searching alignments... [143.388s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2919s] Building query seed array... [2.65169s] Computing hash join... [4.43577s] Building seed filter... [0.070378s] Searching alignments... [118.192s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4455s] Building query seed array... [2.70774s] Computing hash join... [4.43863s] Building seed filter... [0.076046s] Searching alignments... [103.936s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.62524s] Building query seed array... [2.20031s] Computing hash join... [4.41885s] Building seed filter... [0.071797s] Searching alignments... [94.0266s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.66292s] Building query seed array... [1.99591s] Computing hash join... [4.33332s] Building seed filter... [0.068149s] Searching alignments... [101.065s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1444s] Building query seed array... [2.42022s] Computing hash join... [4.2695s] Building seed filter... [0.073957s] Searching alignments... [71.6792s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3701s] Building query seed array... [2.47391s] Computing hash join... [4.30958s] Building seed filter... [0.069267s] Searching alignments... [78.5656s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.5782s] Building query seed array... [2.00477s] Computing hash join... [4.25141s] Building seed filter... [0.076219s] Searching alignments... [68.6366s] Deallocating buffers... [0.122884s] Opening temporary output file... [0.001138s] Computing alignments... [355.649s] Deallocating reference... [0.064994s] Loading reference sequences... [17.1493s] Masking reference... [21.6492s] Initializing temporary storage... [0.0045s] Building reference histograms... [4.5293s] Allocating buffers... [0.000191s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.28755s] Building query seed array... [2.20358s] Computing hash join... [2.12349s] Building seed filter... [0.044733s] Searching alignments... [60.1558s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.26272s] Building query seed array... [2.64449s] Computing hash join... [2.10766s] Building seed filter... [0.042811s] Searching alignments... [58.2054s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.31276s] Building query seed array... [2.68998s] Computing hash join... [2.11263s] Building seed filter... [0.04092s] Searching alignments... [45.7306s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.29763s] Building query seed array... [2.16443s] Computing hash join... [2.18724s] Building seed filter... [0.043429s] Searching alignments... [40.4433s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25508s] Building query seed array... [2.03937s] Computing hash join... [2.01735s] Building seed filter... [0.038939s] Searching alignments... [56.3184s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.23365s] Building query seed array... [2.38285s] Computing hash join... [2.03424s] Building seed filter... [0.041247s] Searching alignments... [30.7982s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.31075s] Building query seed array... [2.42584s] Computing hash join... [1.99676s] Building seed filter... [0.038374s] Searching alignments... [36.7516s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.2173s] Building query seed array... [1.96431s] Computing hash join... [2.00097s] Building seed filter... [0.043215s] Searching alignments... [33.0129s] Deallocating buffers... [0.031496s] Opening temporary output file... [0.036314s] Computing alignments... [162.102s] Deallocating reference... [0.02938s] Loading reference sequences... [0.051122s] Deallocating buffers... [0.020616s] Joining output blocks... [294.627s] Deallocating queries... [0.048824s] Loading query sequences... [3.4e-05s] Closing the input file... [5.9e-05s] Closing the output file... [0.388926s] Closing the database file... [3.6e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 9114.35s Reported 1554965683 pairwise alignments, 1555104720 HSPs. 5539046 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.061648s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.106302s] Opening the output file... [0.00035s] Loading query sequences... [161.092s] Masking queries... [131.242s] Building query seed set... [0.966091s] Algorithm: Double-indexed Building query histograms... [2.67579s] Allocating buffers... [0.000693s] Loading reference sequences... [46.4071s] Masking reference... [59.1554s] Initializing temporary storage... [0.00436s] Building reference histograms... [12.8342s] Allocating buffers... [0.00011s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.95108s] Building query seed array... [1.63922s] Computing hash join... [3.83404s] Building seed filter... [0.042234s] Searching alignments... [8.68539s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2693s] Building query seed array... [1.7028s] Computing hash join... [3.81159s] Building seed filter... [0.037507s] Searching alignments... [6.44654s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4696s] Building query seed array... [1.74035s] Computing hash join... [3.81844s] Building seed filter... [0.035318s] Searching alignments... [5.49397s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.6814s] Building query seed array... [1.5889s] Computing hash join... [3.84135s] Building seed filter... [0.034061s] Searching alignments... [5.91516s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.77748s] Building query seed array... [1.52811s] Computing hash join... [3.77039s] Building seed filter... [0.0311s] Searching alignments... [5.86055s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1457s] Building query seed array... [1.50855s] Computing hash join... [3.77053s] Building seed filter... [0.032419s] Searching alignments... [3.80272s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3692s] Building query seed array... [1.50751s] Computing hash join... [3.79706s] Building seed filter... [0.03111s] Searching alignments... [4.34224s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.50202s] Building query seed array... [1.52284s] Computing hash join... [3.73221s] Building seed filter... [0.032327s] Searching alignments... [4.0781s] Deallocating buffers... [0.117104s] Opening temporary output file... [0.000586s] Computing alignments... [103.346s] Deallocating reference... [0.080594s] Loading reference sequences... [425.092s] Masking reference... [58.9912s] Initializing temporary storage... [0.004513s] Building reference histograms... [12.8225s] Allocating buffers... [0.000179s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.94719s] Building query seed array... [1.69296s] Computing hash join... [3.81523s] Building seed filter... [0.039289s] Searching alignments... [6.95043s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2184s] Building query seed array... [1.7789s] Computing hash join... [3.80942s] Building seed filter... [0.038061s] Searching alignments... [6.98912s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4701s] Building query seed array... [1.74931s] Computing hash join... [3.806s] Building seed filter... [0.037451s] Searching alignments... [5.15302s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.70114s] Building query seed array... [1.59733s] Computing hash join... [3.78811s] Building seed filter... [0.037264s] Searching alignments... [5.21517s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.64532s] Building query seed array... [1.52166s] Computing hash join... [3.75072s] Building seed filter... [0.033392s] Searching alignments... [3.87325s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2198s] Building query seed array... [1.64157s] Computing hash join... [3.74422s] Building seed filter... [0.030614s] Searching alignments... [3.38945s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.2713s] Building query seed array... [1.49848s] Computing hash join... [3.82827s] Building seed filter... [0.030881s] Searching alignments... [3.99771s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.71833s] Building query seed array... [1.87158s] Computing hash join... [3.75828s] Building seed filter... [0.032739s] Searching alignments... [3.9271s] Deallocating buffers... [0.105582s] Opening temporary output file... [0.000499s] Computing alignments... [97.4665s] Deallocating reference... [0.074511s] Loading reference sequences... [432.927s] Masking reference... [57.583s] Initializing temporary storage... [0.005243s] Building reference histograms... [13.0118s] Allocating buffers... [0.000207s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.06063s] Building query seed array... [1.7221s] Computing hash join... [3.87308s] Building seed filter... [0.041248s] Searching alignments... [7.60179s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3323s] Building query seed array... [1.70571s] Computing hash join... [3.83744s] Building seed filter... [0.034273s] Searching alignments... [6.34614s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4308s] Building query seed array... [1.71955s] Computing hash join... [3.7771s] Building seed filter... [0.03425s] Searching alignments... [5.52093s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.74578s] Building query seed array... [1.70228s] Computing hash join... [3.83703s] Building seed filter... [0.035053s] Searching alignments... [5.93902s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.59526s] Building query seed array... [1.50945s] Computing hash join... [3.88791s] Building seed filter... [0.030345s] Searching alignments... [4.30912s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1594s] Building query seed array... [1.58465s] Computing hash join... [3.75595s] Building seed filter... [0.029805s] Searching alignments... [4.61223s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3644s] Building query seed array... [1.55945s] Computing hash join... [3.75121s] Building seed filter... [0.030871s] Searching alignments... [4.36254s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.53306s] Building query seed array... [1.52918s] Computing hash join... [3.80452s] Building seed filter... [0.030904s] Searching alignments... [4.56678s] Deallocating buffers... [0.112713s] Opening temporary output file... [0.000561s] Computing alignments... [102.286s] Deallocating reference... [0.06902s] Loading reference sequences... [412.079s] Masking reference... [57.6066s] Initializing temporary storage... [0.004605s] Building reference histograms... [12.7361s] Allocating buffers... [0.000195s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.00476s] Building query seed array... [1.71694s] Computing hash join... [3.88048s] Building seed filter... [0.040024s] Searching alignments... [7.77024s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2518s] Building query seed array... [1.74665s] Computing hash join... [3.83313s] Building seed filter... [0.03574s] Searching alignments... [6.5379s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.7299s] Building query seed array... [1.81204s] Computing hash join... [3.74626s] Building seed filter... [0.034811s] Searching alignments... [5.21396s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.71971s] Building query seed array... [1.59455s] Computing hash join... [3.78171s] Building seed filter... [0.036672s] Searching alignments... [6.11628s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.64576s] Building query seed array... [1.51713s] Computing hash join... [3.88749s] Building seed filter... [0.032649s] Searching alignments... [3.76145s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.0571s] Building query seed array... [1.59671s] Computing hash join... [3.74001s] Building seed filter... [0.030281s] Searching alignments... [3.827s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3819s] Building query seed array... [1.57661s] Computing hash join... [3.78523s] Building seed filter... [0.030001s] Searching alignments... [3.74334s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.52858s] Building query seed array... [1.54953s] Computing hash join... [3.78585s] Building seed filter... [0.03013s] Searching alignments... [3.86266s] Deallocating buffers... [0.120793s] Opening temporary output file... [0.000517s] Computing alignments... [99.7201s] Deallocating reference... [0.068039s] Loading reference sequences... [370.297s] Masking reference... [57.8549s] Initializing temporary storage... [0.004554s] Building reference histograms... [13.0727s] Allocating buffers... [0.000192s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.10192s] Building query seed array... [1.71094s] Computing hash join... [3.80548s] Building seed filter... [0.042607s] Searching alignments... [7.14026s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2838s] Building query seed array... [1.68253s] Computing hash join... [3.90661s] Building seed filter... [0.03651s] Searching alignments... [6.06674s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4535s] Building query seed array... [1.69277s] Computing hash join... [3.83043s] Building seed filter... [0.036902s] Searching alignments... [5.23916s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.89175s] Building query seed array... [1.59433s] Computing hash join... [3.90741s] Building seed filter... [0.037611s] Searching alignments... [5.32606s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.55947s] Building query seed array... [1.55039s] Computing hash join... [3.73524s] Building seed filter... [0.030372s] Searching alignments... [3.81751s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1285s] Building query seed array... [1.50726s] Computing hash join... [3.80694s] Building seed filter... [0.029735s] Searching alignments... [4.1036s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.2482s] Building query seed array... [1.51251s] Computing hash join... [3.83176s] Building seed filter... [0.033297s] Searching alignments... [4.17913s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.51091s] Building query seed array... [1.48956s] Computing hash join... [3.71926s] Building seed filter... [0.031657s] Searching alignments... [3.42838s] Deallocating buffers... [0.106989s] Opening temporary output file... [0.000388s] Computing alignments... [102.071s] Deallocating reference... [0.06208s] Loading reference sequences... [165.32s] Masking reference... [21.4451s] Initializing temporary storage... [0.004529s] Building reference histograms... [4.78641s] Allocating buffers... [0.000207s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.33931s] Building query seed array... [1.64785s] Computing hash join... [1.49169s] Building seed filter... [0.022217s] Searching alignments... [3.03517s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.29589s] Building query seed array... [1.64449s] Computing hash join... [1.50866s] Building seed filter... [0.019225s] Searching alignments... [3.09136s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.28031s] Building query seed array... [1.63437s] Computing hash join... [1.45841s] Building seed filter... [0.019767s] Searching alignments... [2.22176s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.19954s] Building query seed array... [1.62905s] Computing hash join... [1.48498s] Building seed filter... [0.019397s] Searching alignments... [2.37708s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.24069s] Building query seed array... [1.50579s] Computing hash join... [1.44848s] Building seed filter... [0.016452s] Searching alignments... [1.84915s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.1461s] Building query seed array... [1.50355s] Computing hash join... [1.4283s] Building seed filter... [0.01695s] Searching alignments... [1.72876s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.24843s] Building query seed array... [1.50473s] Computing hash join... [1.43042s] Building seed filter... [0.017061s] Searching alignments... [1.70342s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.19444s] Building query seed array... [1.46053s] Computing hash join... [1.47329s] Building seed filter... [0.017123s] Searching alignments... [1.59221s] Deallocating buffers... [0.0419s] Opening temporary output file... [0.042316s] Computing alignments... [96.778s] Deallocating reference... [0.028137s] Loading reference sequences... [5.1e-05s] Deallocating buffers... [0.001749s] Joining output blocks... [12.8342s] Deallocating queries... [0.093898s] Loading query sequences... [3.1e-05s] Closing the input file... [5.5e-05s] Closing the output file... [0.1995s] Closing the database file... [3.7e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 4046.08s Reported 35127347 pairwise alignments, 35133508 HSPs. 233261 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.037227s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.100818s] Opening the output file... [0.000368s] Loading query sequences... [162.01s] Masking queries... [129.996s] Building query seed set... [1.07192s] Algorithm: Double-indexed Building query histograms... [2.61584s] Allocating buffers... [0.000687s] Loading reference sequences... [47.1154s] Masking reference... [59.0698s] Initializing temporary storage... [0.004708s] Building reference histograms... [12.8572s] Allocating buffers... [0.000196s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.00413s] Building query seed array... [1.61395s] Computing hash join... [3.89216s] Building seed filter... [0.040323s] Searching alignments... [8.88082s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3195s] Building query seed array... [1.67871s] Computing hash join... [3.81646s] Building seed filter... [0.038904s] Searching alignments... [6.33408s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.3945s] Building query seed array... [1.70587s] Computing hash join... [3.79601s] Building seed filter... [0.039154s] Searching alignments... [5.51357s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.6697s] Building query seed array... [1.61104s] Computing hash join... [3.83128s] Building seed filter... [0.039839s] Searching alignments... [5.74433s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.58026s] Building query seed array... [1.45176s] Computing hash join... [3.80332s] Building seed filter... [0.039615s] Searching alignments... [5.21531s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.175s] Building query seed array... [1.53264s] Computing hash join... [3.79501s] Building seed filter... [0.034282s] Searching alignments... [3.87749s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3617s] Building query seed array... [1.58002s] Computing hash join... [3.84808s] Building seed filter... [0.034548s] Searching alignments... [4.44095s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.55475s] Building query seed array... [1.50157s] Computing hash join... [3.77132s] Building seed filter... [0.038723s] Searching alignments... [3.99898s] Deallocating buffers... [0.108367s] Opening temporary output file... [0.000564s] Computing alignments... [102.675s] Deallocating reference... [0.076018s] Loading reference sequences... [426.208s] Masking reference... [58.1048s] Initializing temporary storage... [0.008478s] Building reference histograms... [13.2528s] Allocating buffers... [0.000191s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.38897s] Building query seed array... [1.70675s] Computing hash join... [3.8527s] Building seed filter... [0.038531s] Searching alignments... [6.71618s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.4721s] Building query seed array... [1.73975s] Computing hash join... [3.80763s] Building seed filter... [0.037007s] Searching alignments... [5.67281s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4551s] Building query seed array... [1.73726s] Computing hash join... [3.85207s] Building seed filter... [0.04008s] Searching alignments... [5.14319s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.64361s] Building query seed array... [1.56542s] Computing hash join... [3.81457s] Building seed filter... [0.038874s] Searching alignments... [5.39755s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.63349s] Building query seed array... [2.34738s] Computing hash join... [3.84956s] Building seed filter... [0.038187s] Searching alignments... [3.84027s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.3924s] Building query seed array... [1.60426s] Computing hash join... [3.86067s] Building seed filter... [0.033731s] Searching alignments... [3.33261s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.2279s] Building query seed array... [1.50722s] Computing hash join... [3.81461s] Building seed filter... [0.03493s] Searching alignments... [3.85941s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.53s] Building query seed array... [1.50931s] Computing hash join... [3.77745s] Building seed filter... [0.034543s] Searching alignments... [3.3842s] Deallocating buffers... [0.105376s] Opening temporary output file... [0.000518s] Computing alignments... [100.433s] Deallocating reference... [0.072359s] Loading reference sequences... [455.059s] Masking reference... [58.2557s] Initializing temporary storage... [0.004604s] Building reference histograms... [13.1045s] Allocating buffers... [0.00019s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.00712s] Building query seed array... [1.66495s] Computing hash join... [3.81319s] Building seed filter... [0.043492s] Searching alignments... [7.41338s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2899s] Building query seed array... [1.72717s] Computing hash join... [3.77648s] Building seed filter... [0.038378s] Searching alignments... [6.36723s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4667s] Building query seed array... [1.71013s] Computing hash join... [3.79537s] Building seed filter... [0.037814s] Searching alignments... [5.58851s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.66793s] Building query seed array... [1.61857s] Computing hash join... [3.96668s] Building seed filter... [0.038728s] Searching alignments... [5.59771s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.58413s] Building query seed array... [1.47943s] Computing hash join... [3.75932s] Building seed filter... [0.037685s] Searching alignments... [4.34093s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1745s] Building query seed array... [1.50774s] Computing hash join... [3.90653s] Building seed filter... [0.033474s] Searching alignments... [4.47686s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4292s] Building query seed array... [1.57252s] Computing hash join... [3.95945s] Building seed filter... [0.035832s] Searching alignments... [4.35474s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.5238s] Building query seed array... [1.54712s] Computing hash join... [3.77481s] Building seed filter... [0.035992s] Searching alignments... [4.4426s] Deallocating buffers... [0.103518s] Opening temporary output file... [0.000868s] Computing alignments... [100.271s] Deallocating reference... [0.07031s] Loading reference sequences... [390.826s] Masking reference... [57.539s] Initializing temporary storage... [0.004531s] Building reference histograms... [13.0475s] Allocating buffers... [0.000183s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.91169s] Building query seed array... [1.63905s] Computing hash join... [3.93202s] Building seed filter... [0.041722s] Searching alignments... [7.12313s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2749s] Building query seed array... [1.71558s] Computing hash join... [3.80872s] Building seed filter... [0.04084s] Searching alignments... [5.85518s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4784s] Building query seed array... [1.70411s] Computing hash join... [3.79762s] Building seed filter... [0.038449s] Searching alignments... [5.40912s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.81243s] Building query seed array... [1.62966s] Computing hash join... [3.88366s] Building seed filter... [0.038118s] Searching alignments... [5.19407s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.57662s] Building query seed array... [1.57875s] Computing hash join... [3.79814s] Building seed filter... [0.033955s] Searching alignments... [3.94123s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.6055s] Building query seed array... [1.57286s] Computing hash join... [3.81083s] Building seed filter... [0.033879s] Searching alignments... [3.96588s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4189s] Building query seed array... [1.56099s] Computing hash join... [3.85379s] Building seed filter... [0.03712s] Searching alignments... [3.79097s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.56039s] Building query seed array... [1.50496s] Computing hash join... [3.84302s] Building seed filter... [0.035473s] Searching alignments... [3.45061s] Deallocating buffers... [0.105928s] Opening temporary output file... [0.000545s] Computing alignments... [98.3961s] Deallocating reference... [0.06341s] Loading reference sequences... [378.791s] Masking reference... [57.6819s] Initializing temporary storage... [0.005119s] Building reference histograms... [13.1074s] Allocating buffers... [0.000191s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.94266s] Building query seed array... [1.62516s] Computing hash join... [3.86525s] Building seed filter... [0.046032s] Searching alignments... [6.91425s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2389s] Building query seed array... [1.69252s] Computing hash join... [3.83102s] Building seed filter... [0.040329s] Searching alignments... [5.58557s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.3938s] Building query seed array... [1.69552s] Computing hash join... [3.82105s] Building seed filter... [0.040222s] Searching alignments... [5.06021s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.627s] Building query seed array... [1.57822s] Computing hash join... [3.93031s] Building seed filter... [0.040132s] Searching alignments... [5.39492s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.61917s] Building query seed array... [1.50348s] Computing hash join... [3.82127s] Building seed filter... [0.033584s] Searching alignments... [3.83535s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.5298s] Building query seed array... [1.57143s] Computing hash join... [3.85044s] Building seed filter... [0.035149s] Searching alignments... [4.16756s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3363s] Building query seed array... [1.49352s] Computing hash join... [3.85573s] Building seed filter... [0.038321s] Searching alignments... [4.20948s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.50751s] Building query seed array... [1.50085s] Computing hash join... [3.81673s] Building seed filter... [0.037263s] Searching alignments... [3.52699s] Deallocating buffers... [0.106518s] Opening temporary output file... [0.000583s] Computing alignments... [100.931s] Deallocating reference... [0.066345s] Loading reference sequences... [165.031s] Masking reference... [21.1678s] Initializing temporary storage... [0.004735s] Building reference histograms... [4.80603s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.31502s] Building query seed array... [1.61588s] Computing hash join... [1.47798s] Building seed filter... [0.025662s] Searching alignments... [2.82775s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.35476s] Building query seed array... [1.62175s] Computing hash join... [1.56027s] Building seed filter... [0.023876s] Searching alignments... [2.81749s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30096s] Building query seed array... [1.6349s] Computing hash join... [1.52228s] Building seed filter... [0.022801s] Searching alignments... [2.19147s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.14269s] Building query seed array... [2.41113s] Computing hash join... [1.52698s] Building seed filter... [0.021324s] Searching alignments... [2.18388s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.2868s] Building query seed array... [1.46932s] Computing hash join... [1.47515s] Building seed filter... [0.020364s] Searching alignments... [1.73342s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.08964s] Building query seed array... [1.48611s] Computing hash join... [1.48508s] Building seed filter... [0.019494s] Searching alignments... [1.70772s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.23035s] Building query seed array... [1.48778s] Computing hash join... [1.45497s] Building seed filter... [0.019717s] Searching alignments... [1.68684s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.16252s] Building query seed array... [1.44283s] Computing hash join... [1.46205s] Building seed filter... [0.02126s] Searching alignments... [1.5992s] Deallocating buffers... [0.042434s] Opening temporary output file... [0.026681s] Computing alignments... [94.4773s] Deallocating reference... [0.028631s] Loading reference sequences... [4.8e-05s] Deallocating buffers... [0.001766s] Joining output blocks... [12.7133s] Deallocating queries... [0.102587s] Loading query sequences... [3.4e-05s] Closing the input file... [5.8e-05s] Closing the output file... [0.227304s] Closing the database file... [3.6e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 4047.89s Reported 34916201 pairwise alignments, 34920583 HSPs. 219659 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000532s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.081185s] Opening the output file... [0.000338s] Loading query sequences... [56.6026s] Masking queries... [37.688s] Building query seed set... [0.251517s] Algorithm: Double-indexed Building query histograms... [1.52996s] Allocating buffers... [0.00071s] Loading reference sequences... [444.762s] Masking reference... [59.0636s] Initializing temporary storage... [0.004622s] Building reference histograms... [12.5616s] Allocating buffers... [0.000209s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.04827s] Building query seed array... [1.03887s] Computing hash join... [3.94275s] Building seed filter... [0.075615s] Searching alignments... [26.9533s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.209s] Building query seed array... [1.16112s] Computing hash join... [3.99196s] Building seed filter... [0.07416s] Searching alignments... [24.7085s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5136s] Building query seed array... [1.18178s] Computing hash join... [3.92554s] Building seed filter... [0.087273s] Searching alignments... [22.5508s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.67943s] Building query seed array... [1.00584s] Computing hash join... [3.9047s] Building seed filter... [0.071725s] Searching alignments... [20.928s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.66722s] Building query seed array... [0.889355s] Computing hash join... [3.84538s] Building seed filter... [0.064911s] Searching alignments... [14.6892s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.212s] Building query seed array... [1.06118s] Computing hash join... [3.80258s] Building seed filter... [0.064004s] Searching alignments... [14.1818s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3477s] Building query seed array... [0.999284s] Computing hash join... [3.78232s] Building seed filter... [0.060229s] Searching alignments... [14.6151s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.55506s] Building query seed array... [0.886631s] Computing hash join... [3.82044s] Building seed filter... [0.069148s] Searching alignments... [14.1833s] Deallocating buffers... [0.117126s] Opening temporary output file... [0.000786s] Computing alignments... [59.1555s] Deallocating reference... [0.08732s] Loading reference sequences... [435.545s] Masking reference... [57.9206s] Initializing temporary storage... [0.004566s] Building reference histograms... [13.4633s] Allocating buffers... [0.000705s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.0008s] Building query seed array... [1.02621s] Computing hash join... [3.95466s] Building seed filter... [0.074379s] Searching alignments... [24.7181s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2339s] Building query seed array... [1.19195s] Computing hash join... [3.88238s] Building seed filter... [0.065755s] Searching alignments... [21.9914s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.6694s] Building query seed array... [1.23934s] Computing hash join... [3.95521s] Building seed filter... [0.073248s] Searching alignments... [21.0312s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.62046s] Building query seed array... [1.06556s] Computing hash join... [3.91158s] Building seed filter... [0.071344s] Searching alignments... [19.3073s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.69828s] Building query seed array... [1.04174s] Computing hash join... [3.86724s] Building seed filter... [0.064506s] Searching alignments... [13.9015s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1137s] Building query seed array... [1.07484s] Computing hash join... [3.83516s] Building seed filter... [0.061389s] Searching alignments... [13.4848s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3676s] Building query seed array... [1.06783s] Computing hash join... [3.92546s] Building seed filter... [0.065795s] Searching alignments... [13.8795s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.55396s] Building query seed array... [0.954043s] Computing hash join... [3.8041s] Building seed filter... [0.066894s] Searching alignments... [13.4541s] Deallocating buffers... [0.108351s] Opening temporary output file... [0.001487s] Computing alignments... [54.9725s] Deallocating reference... [0.0748s] Loading reference sequences... [52.9986s] Masking reference... [57.9745s] Initializing temporary storage... [0.004509s] Building reference histograms... [13.5164s] Allocating buffers... [0.000748s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.39083s] Building query seed array... [1.12521s] Computing hash join... [4.05026s] Building seed filter... [0.076312s] Searching alignments... [26.2392s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3275s] Building query seed array... [1.23696s] Computing hash join... [3.93746s] Building seed filter... [0.068195s] Searching alignments... [24.822s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5278s] Building query seed array... [1.23516s] Computing hash join... [3.93973s] Building seed filter... [0.077329s] Searching alignments... [21.5624s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.66425s] Building query seed array... [1.10322s] Computing hash join... [3.93989s] Building seed filter... [0.07179s] Searching alignments... [19.9041s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.67611s] Building query seed array... [0.869019s] Computing hash join... [3.86207s] Building seed filter... [0.062297s] Searching alignments... [14.1977s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2135s] Building query seed array... [1.0728s] Computing hash join... [3.81764s] Building seed filter... [0.063216s] Searching alignments... [13.7434s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4333s] Building query seed array... [1.07373s] Computing hash join... [3.81482s] Building seed filter... [0.061391s] Searching alignments... [14.7226s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.53093s] Building query seed array... [0.931071s] Computing hash join... [3.75574s] Building seed filter... [0.062326s] Searching alignments... [13.5503s] Deallocating buffers... [0.105773s] Opening temporary output file... [0.000914s] Computing alignments... [59.4447s] Deallocating reference... [0.072487s] Loading reference sequences... [54.6018s] Masking reference... [58.3316s] Initializing temporary storage... [0.00407s] Building reference histograms... [12.1878s] Allocating buffers... [0.000785s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.99846s] Building query seed array... [1.09509s] Computing hash join... [3.88846s] Building seed filter... [0.078147s] Searching alignments... [27.1426s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2745s] Building query seed array... [1.22819s] Computing hash join... [3.91917s] Building seed filter... [0.068654s] Searching alignments... [24.5361s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5048s] Building query seed array... [1.24875s] Computing hash join... [3.95452s] Building seed filter... [0.078884s] Searching alignments... [21.5799s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.64575s] Building query seed array... [1.01933s] Computing hash join... [3.8973s] Building seed filter... [0.066331s] Searching alignments... [20.5122s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.66481s] Building query seed array... [0.868211s] Computing hash join... [3.88201s] Building seed filter... [0.065422s] Searching alignments... [15.934s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.3429s] Building query seed array... [1.06555s] Computing hash join... [3.79677s] Building seed filter... [0.066415s] Searching alignments... [14.1342s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.5562s] Building query seed array... [1.09278s] Computing hash join... [3.76981s] Building seed filter... [0.062743s] Searching alignments... [14.8647s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.59185s] Building query seed array... [0.888825s] Computing hash join... [3.74985s] Building seed filter... [0.06796s] Searching alignments... [13.6278s] Deallocating buffers... [0.115014s] Opening temporary output file... [0.015509s] Computing alignments... [60.389s] Deallocating reference... [0.065802s] Loading reference sequences... [48.7525s] Masking reference... [58.4099s] Initializing temporary storage... [0.004656s] Building reference histograms... [12.8346s] Allocating buffers... [0.000757s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.92601s] Building query seed array... [1.03808s] Computing hash join... [3.92579s] Building seed filter... [0.075213s] Searching alignments... [25.2125s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2114s] Building query seed array... [1.1785s] Computing hash join... [3.8945s] Building seed filter... [0.068418s] Searching alignments... [22.7912s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.5s] Building query seed array... [1.18451s] Computing hash join... [3.93952s] Building seed filter... [0.084387s] Searching alignments... [21.3882s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.62035s] Building query seed array... [1.02163s] Computing hash join... [3.93724s] Building seed filter... [0.072745s] Searching alignments... [19.5733s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.67736s] Building query seed array... [0.868019s] Computing hash join... [3.80037s] Building seed filter... [0.063874s] Searching alignments... [14.1238s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1553s] Building query seed array... [0.97414s] Computing hash join... [3.82334s] Building seed filter... [0.068589s] Searching alignments... [13.5531s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3104s] Building query seed array... [0.972732s] Computing hash join... [3.78834s] Building seed filter... [0.071114s] Searching alignments... [14.3292s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.59977s] Building query seed array... [0.84749s] Computing hash join... [3.85186s] Building seed filter... [0.072561s] Searching alignments... [13.757s] Deallocating buffers... [0.113097s] Opening temporary output file... [0.000562s] Computing alignments... [57.5464s] Deallocating reference... [0.072537s] Loading reference sequences... [18.5357s] Masking reference... [21.1709s] Initializing temporary storage... [0.003519s] Building reference histograms... [4.7478s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.31307s] Building query seed array... [1.05581s] Computing hash join... [1.65805s] Building seed filter... [0.04209s] Searching alignments... [11.0141s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.34113s] Building query seed array... [1.13543s] Computing hash join... [1.61254s] Building seed filter... [0.039201s] Searching alignments... [10.0966s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30047s] Building query seed array... [1.14155s] Computing hash join... [1.5942s] Building seed filter... [0.039694s] Searching alignments... [9.0944s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26161s] Building query seed array... [1.03803s] Computing hash join... [1.64805s] Building seed filter... [0.041733s] Searching alignments... [8.39241s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.24938s] Building query seed array... [0.987864s] Computing hash join... [1.57801s] Building seed filter... [0.034258s] Searching alignments... [6.16692s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.19384s] Building query seed array... [0.976309s] Computing hash join... [1.55107s] Building seed filter... [0.035925s] Searching alignments... [5.85622s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.25543s] Building query seed array... [0.992167s] Computing hash join... [1.57509s] Building seed filter... [0.03861s] Searching alignments... [6.00071s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.25076s] Building query seed array... [0.858278s] Computing hash join... [1.55719s] Building seed filter... [0.038176s] Searching alignments... [5.715s] Deallocating buffers... [0.042456s] Opening temporary output file... [0.001241s] Computing alignments... [40.3659s] Deallocating reference... [0.028134s] Loading reference sequences... [4.7e-05s] Deallocating buffers... [0.005515s] Joining output blocks... [22.0604s] Deallocating queries... [0.023119s] Loading query sequences... [3.3e-05s] Closing the input file... [4.8e-05s] Closing the output file... [0.476182s] Closing the database file... [2.8e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 3345.52s Reported 64295348 pairwise alignments, 64299265 HSPs. 1018132 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.090584s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.088211s] Opening the output file... [0.001229s] Loading query sequences... [52.7383s] Masking queries... [38.3624s] Building query seed set... [0.249738s] Algorithm: Double-indexed Building query histograms... [1.42365s] Allocating buffers... [0.000683s] Loading reference sequences... [451.344s] Masking reference... [58.8264s] Initializing temporary storage... [0.004472s] Building reference histograms... [12.0472s] Allocating buffers... [0.000215s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.97297s] Building query seed array... [0.902976s] Computing hash join... [3.88633s] Building seed filter... [0.061762s] Searching alignments... [27.0253s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2894s] Building query seed array... [1.15415s] Computing hash join... [3.75526s] Building seed filter... [0.059402s] Searching alignments... [25.0403s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5013s] Building query seed array... [1.096s] Computing hash join... [3.82107s] Building seed filter... [0.074782s] Searching alignments... [22.1646s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.64734s] Building query seed array... [0.857483s] Computing hash join... [3.7647s] Building seed filter... [0.066434s] Searching alignments... [21.3048s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.66291s] Building query seed array... [0.860265s] Computing hash join... [3.71765s] Building seed filter... [0.05394s] Searching alignments... [14.6993s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.115s] Building query seed array... [0.900328s] Computing hash join... [3.789s] Building seed filter... [0.052871s] Searching alignments... [14.487s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3747s] Building query seed array... [0.899088s] Computing hash join... [3.72938s] Building seed filter... [0.056644s] Searching alignments... [14.8637s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.54848s] Building query seed array... [0.783544s] Computing hash join... [3.69769s] Building seed filter... [0.055003s] Searching alignments... [14.0329s] Deallocating buffers... [0.106346s] Opening temporary output file... [0.000945s] Computing alignments... [62.1325s] Deallocating reference... [0.075651s] Loading reference sequences... [426.14s] Masking reference... [57.7228s] Initializing temporary storage... [0.004039s] Building reference histograms... [12.1594s] Allocating buffers... [0.0002s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.92286s] Building query seed array... [0.892333s] Computing hash join... [3.81464s] Building seed filter... [0.069424s] Searching alignments... [24.9063s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.4164s] Building query seed array... [1.07841s] Computing hash join... [3.81855s] Building seed filter... [0.059466s] Searching alignments... [22.8135s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4677s] Building query seed array... [1.10943s] Computing hash join... [3.77689s] Building seed filter... [0.063668s] Searching alignments... [21.0125s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.61912s] Building query seed array... [0.872825s] Computing hash join... [3.77794s] Building seed filter... [0.058475s] Searching alignments... [19.0554s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.80808s] Building query seed array... [0.849437s] Computing hash join... [3.7129s] Building seed filter... [0.054406s] Searching alignments... [13.5178s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1705s] Building query seed array... [0.983384s] Computing hash join... [3.70218s] Building seed filter... [0.157317s] Searching alignments... [13.2727s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3239s] Building query seed array... [0.961193s] Computing hash join... [3.705s] Building seed filter... [0.054002s] Searching alignments... [13.8079s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.61804s] Building query seed array... [0.839782s] Computing hash join... [3.67437s] Building seed filter... [0.055638s] Searching alignments... [13.7008s] Deallocating buffers... [0.106295s] Opening temporary output file... [0.001073s] Computing alignments... [56.7987s] Deallocating reference... [0.079345s] Loading reference sequences... [42.4262s] Masking reference... [59.4257s] Initializing temporary storage... [0.005185s] Building reference histograms... [12.1703s] Allocating buffers... [0.00019s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.94054s] Building query seed array... [0.904849s] Computing hash join... [3.85561s] Building seed filter... [0.064679s] Searching alignments... [26.5442s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.239s] Building query seed array... [1.07927s] Computing hash join... [3.76492s] Building seed filter... [0.057876s] Searching alignments... [24.5409s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.6202s] Building query seed array... [1.07391s] Computing hash join... [3.78543s] Building seed filter... [0.058786s] Searching alignments... [21.5977s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.64756s] Building query seed array... [0.885168s] Computing hash join... [3.79031s] Building seed filter... [0.056557s] Searching alignments... [20.0198s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.8312s] Building query seed array... [0.841664s] Computing hash join... [3.76218s] Building seed filter... [0.051514s] Searching alignments... [14.2824s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1505s] Building query seed array... [0.948376s] Computing hash join... [3.67328s] Building seed filter... [0.049573s] Searching alignments... [14.162s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3781s] Building query seed array... [0.959005s] Computing hash join... [3.70071s] Building seed filter... [0.05193s] Searching alignments... [15.193s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.56686s] Building query seed array... [0.966453s] Computing hash join... [3.72297s] Building seed filter... [0.056086s] Searching alignments... [14.1689s] Deallocating buffers... [0.106084s] Opening temporary output file... [0.001434s] Computing alignments... [61.6194s] Deallocating reference... [0.081521s] Loading reference sequences... [41.6443s] Masking reference... [59.2355s] Initializing temporary storage... [0.005322s] Building reference histograms... [12.6878s] Allocating buffers... [0.00019s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.05066s] Building query seed array... [0.898638s] Computing hash join... [3.81773s] Building seed filter... [0.065152s] Searching alignments... [27.1398s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3802s] Building query seed array... [1.1128s] Computing hash join... [3.80051s] Building seed filter... [0.061306s] Searching alignments... [25.488s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5717s] Building query seed array... [1.07637s] Computing hash join... [3.79952s] Building seed filter... [0.06509s] Searching alignments... [21.5221s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.63954s] Building query seed array... [0.865062s] Computing hash join... [3.87851s] Building seed filter... [0.059069s] Searching alignments... [20.8276s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.70044s] Building query seed array... [0.771693s] Computing hash join... [3.70008s] Building seed filter... [0.051904s] Searching alignments... [15.3398s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1294s] Building query seed array... [0.895851s] Computing hash join... [3.73089s] Building seed filter... [0.062587s] Searching alignments... [14.4309s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4257s] Building query seed array... [0.95643s] Computing hash join... [3.75623s] Building seed filter... [0.050035s] Searching alignments... [14.7084s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.57673s] Building query seed array... [0.786212s] Computing hash join... [3.69779s] Building seed filter... [0.05757s] Searching alignments... [13.609s] Deallocating buffers... [0.105476s] Opening temporary output file... [0.00138s] Computing alignments... [61.3407s] Deallocating reference... [0.083666s] Loading reference sequences... [39.1293s] Masking reference... [57.669s] Initializing temporary storage... [0.0053s] Building reference histograms... [12.1786s] Allocating buffers... [0.000189s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.95386s] Building query seed array... [0.905929s] Computing hash join... [3.78001s] Building seed filter... [0.065759s] Searching alignments... [25.2109s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2396s] Building query seed array... [1.02676s] Computing hash join... [3.76072s] Building seed filter... [0.060893s] Searching alignments... [22.8082s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.463s] Building query seed array... [0.999515s] Computing hash join... [3.8442s] Building seed filter... [0.061981s] Searching alignments... [21.3639s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.59791s] Building query seed array... [0.866917s] Computing hash join... [3.77585s] Building seed filter... [0.066616s] Searching alignments... [19.1491s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.81208s] Building query seed array... [0.857651s] Computing hash join... [3.68162s] Building seed filter... [0.059253s] Searching alignments... [13.9221s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2043s] Building query seed array... [0.94865s] Computing hash join... [3.67711s] Building seed filter... [0.05987s] Searching alignments... [13.3457s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3432s] Building query seed array... [0.877577s] Computing hash join... [3.71289s] Building seed filter... [0.054778s] Searching alignments... [14.3725s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.96195s] Building query seed array... [0.852332s] Computing hash join... [3.7294s] Building seed filter... [0.055606s] Searching alignments... [13.4979s] Deallocating buffers... [0.110517s] Opening temporary output file... [0.001318s] Computing alignments... [57.3961s] Deallocating reference... [0.078477s] Loading reference sequences... [17.4617s] Masking reference... [21.9244s] Initializing temporary storage... [0.004017s] Building reference histograms... [4.64377s] Allocating buffers... [0.000479s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.25199s] Building query seed array... [0.985247s] Computing hash join... [1.56433s] Building seed filter... [0.044697s] Searching alignments... [11.0321s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21385s] Building query seed array... [0.993979s] Computing hash join... [1.57408s] Building seed filter... [0.04043s] Searching alignments... [10.3868s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.32206s] Building query seed array... [1.0029s] Computing hash join... [1.56522s] Building seed filter... [0.037396s] Searching alignments... [9.11867s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.30811s] Building query seed array... [0.861858s] Computing hash join... [1.5719s] Building seed filter... [0.040192s] Searching alignments... [8.36753s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25708s] Building query seed array... [0.77143s] Computing hash join... [1.51803s] Building seed filter... [0.030863s] Searching alignments... [6.31449s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.20455s] Building query seed array... [0.865763s] Computing hash join... [1.53857s] Building seed filter... [0.029752s] Searching alignments... [5.88893s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.31529s] Building query seed array... [0.874944s] Computing hash join... [1.51021s] Building seed filter... [0.032893s] Searching alignments... [5.90803s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.19778s] Building query seed array... [0.767534s] Computing hash join... [1.51186s] Building seed filter... [0.031591s] Searching alignments... [5.76952s] Deallocating buffers... [0.04287s] Opening temporary output file... [0.013303s] Computing alignments... [41.8327s] Deallocating reference... [0.028761s] Loading reference sequences... [4.9e-05s] Deallocating buffers... [0.004438s] Joining output blocks... [24.9433s] Deallocating queries... [0.028537s] Loading query sequences... [3.2e-05s] Closing the input file... [4.6e-05s] Closing the output file... [0.631264s] Closing the database file... [4e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 3307.71s Reported 70255134 pairwise alignments, 70261831 HSPs. 1039895 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.10482s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.085719s] Opening the output file... [0.000806s] Loading query sequences... [94.6458s] Masking queries... [62.5091s] Building query seed set... [0.36567s] Algorithm: Double-indexed Building query histograms... [2.95186s] Allocating buffers... [0.000687s] Loading reference sequences... [45.7525s] Masking reference... [58.9469s] Initializing temporary storage... [0.005153s] Building reference histograms... [11.9662s] Allocating buffers... [0.000225s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.84122s] Building query seed array... [1.97402s] Computing hash join... [4.23245s] Building seed filter... [0.073962s] Searching alignments... [241.328s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2749s] Building query seed array... [2.24292s] Computing hash join... [4.21646s] Building seed filter... [0.063396s] Searching alignments... [174.521s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4882s] Building query seed array... [2.31335s] Computing hash join... [4.23485s] Building seed filter... [0.064642s] Searching alignments... [153.544s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.6785s] Building query seed array... [1.94351s] Computing hash join... [4.18064s] Building seed filter... [0.075408s] Searching alignments... [135.171s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.63337s] Building query seed array... [1.80985s] Computing hash join... [4.06688s] Building seed filter... [0.064922s] Searching alignments... [135.571s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2353s] Building query seed array... [2.04222s] Computing hash join... [4.16847s] Building seed filter... [0.064755s] Searching alignments... [106.559s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4079s] Building query seed array... [2.18621s] Computing hash join... [4.02348s] Building seed filter... [0.062222s] Searching alignments... [122.099s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.58114s] Building query seed array... [1.72304s] Computing hash join... [4.06775s] Building seed filter... [0.069483s] Searching alignments... [101.635s] Deallocating buffers... [0.123445s] Opening temporary output file... [0.009047s] Computing alignments... [565.47s] Deallocating reference... [0.092902s] Loading reference sequences... [43.1722s] Masking reference... [58.1684s] Initializing temporary storage... [0.004664s] Building reference histograms... [11.9908s] Allocating buffers... [0.000192s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.14808s] Building query seed array... [2.01168s] Computing hash join... [4.17512s] Building seed filter... [0.069997s] Searching alignments... [178.822s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.4301s] Building query seed array... [2.33518s] Computing hash join... [4.19924s] Building seed filter... [0.067733s] Searching alignments... [125.685s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5148s] Building query seed array... [2.39846s] Computing hash join... [4.17817s] Building seed filter... [0.064453s] Searching alignments... [118.982s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.65586s] Building query seed array... [1.90117s] Computing hash join... [4.1502s] Building seed filter... [0.072065s] Searching alignments... [100.462s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.65s] Building query seed array... [2.00777s] Computing hash join... [4.04901s] Building seed filter... [0.062536s] Searching alignments... [119.915s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1791s] Building query seed array... [2.18241s] Computing hash join... [4.06677s] Building seed filter... [0.060042s] Searching alignments... [80.0922s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4933s] Building query seed array... [2.17028s] Computing hash join... [4.072s] Building seed filter... [0.060033s] Searching alignments... [91.2351s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.57963s] Building query seed array... [1.75376s] Computing hash join... [4.09361s] Building seed filter... [0.063654s] Searching alignments... [76.376s] Deallocating buffers... [0.126528s] Opening temporary output file... [0.000566s] Computing alignments... [401.129s] Deallocating reference... [0.083188s] Loading reference sequences... [410.151s] Masking reference... [57.6961s] Initializing temporary storage... [0.005003s] Building reference histograms... [12.6936s] Allocating buffers... [0.000187s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.8951s] Building query seed array... [1.93199s] Computing hash join... [4.18989s] Building seed filter... [0.066477s] Searching alignments... [219.234s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3146s] Building query seed array... [2.3374s] Computing hash join... [4.1681s] Building seed filter... [0.063668s] Searching alignments... [174.179s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5289s] Building query seed array... [2.35956s] Computing hash join... [4.18862s] Building seed filter... [0.068067s] Searching alignments... [141.587s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.66066s] Building query seed array... [1.91407s] Computing hash join... [4.30101s] Building seed filter... [0.064597s] Searching alignments... [138.439s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.88292s] Building query seed array... [1.82719s] Computing hash join... [4.06449s] Building seed filter... [0.065894s] Searching alignments... [121.209s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.157s] Building query seed array... [2.13456s] Computing hash join... [4.08432s] Building seed filter... [0.062222s] Searching alignments... [96.0949s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3757s] Building query seed array... [2.18129s] Computing hash join... [4.11124s] Building seed filter... [0.062004s] Searching alignments... [107.023s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.53551s] Building query seed array... [1.74023s] Computing hash join... [4.02483s] Building seed filter... [0.064836s] Searching alignments... [87.5087s] Deallocating buffers... [0.103916s] Opening temporary output file... [0.001801s] Computing alignments... [517.623s] Deallocating reference... [0.086354s] Loading reference sequences... [39.4471s] Masking reference... [57.7302s] Initializing temporary storage... [0.004268s] Building reference histograms... [11.9979s] Allocating buffers... [0.000195s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.03171s] Building query seed array... [1.94072s] Computing hash join... [4.18496s] Building seed filter... [0.077721s] Searching alignments... [223.365s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.844s] Building query seed array... [2.34767s] Computing hash join... [4.19283s] Building seed filter... [0.063431s] Searching alignments... [160.304s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4873s] Building query seed array... [2.3792s] Computing hash join... [4.196s] Building seed filter... [0.069552s] Searching alignments... [105.583s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.69936s] Building query seed array... [2.00997s] Computing hash join... [4.19322s] Building seed filter... [0.065815s] Searching alignments... [122.627s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.69554s] Building query seed array... [1.80129s] Computing hash join... [4.09251s] Building seed filter... [0.062122s] Searching alignments... [134.056s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1484s] Building query seed array... [2.16348s] Computing hash join... [4.09695s] Building seed filter... [0.059968s] Searching alignments... [95.7487s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4405s] Building query seed array... [2.15131s] Computing hash join... [4.05734s] Building seed filter... [0.066494s] Searching alignments... [112.135s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.56878s] Building query seed array... [1.75022s] Computing hash join... [4.03865s] Building seed filter... [0.065323s] Searching alignments... [91.7606s] Deallocating buffers... [0.113453s] Opening temporary output file... [0.000645s] Computing alignments... [407.216s] Deallocating reference... [0.081639s] Loading reference sequences... [40.9927s] Masking reference... [58.244s] Initializing temporary storage... [0.00579s] Building reference histograms... [12.8157s] Allocating buffers... [0.000191s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.15754s] Building query seed array... [2.00596s] Computing hash join... [4.16368s] Building seed filter... [0.069235s] Searching alignments... [155.173s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.3287s] Building query seed array... [2.2387s] Computing hash join... [4.2283s] Building seed filter... [0.068797s] Searching alignments... [113.64s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.5158s] Building query seed array... [2.29432s] Computing hash join... [4.27574s] Building seed filter... [0.064443s] Searching alignments... [108.465s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.60665s] Building query seed array... [1.93946s] Computing hash join... [4.21399s] Building seed filter... [0.068915s] Searching alignments... [102.722s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.7591s] Building query seed array... [1.73559s] Computing hash join... [4.14763s] Building seed filter... [0.067824s] Searching alignments... [94.7353s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2467s] Building query seed array... [2.13548s] Computing hash join... [4.15199s] Building seed filter... [0.06916s] Searching alignments... [76.9659s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.4059s] Building query seed array... [2.10377s] Computing hash join... [4.10574s] Building seed filter... [0.064108s] Searching alignments... [80.0772s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.55518s] Building query seed array... [1.75619s] Computing hash join... [4.02559s] Building seed filter... [0.066993s] Searching alignments... [91.6806s] Deallocating buffers... [0.107977s] Opening temporary output file... [0.095351s] Computing alignments... [360.095s] Deallocating reference... [0.078257s] Loading reference sequences... [17.0512s] Masking reference... [21.7099s] Initializing temporary storage... [0.00454s] Building reference histograms... [4.54134s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.36844s] Building query seed array... [1.94755s] Computing hash join... [1.94105s] Building seed filter... [0.044526s] Searching alignments... [77.3029s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.25225s] Building query seed array... [2.29649s] Computing hash join... [1.97917s] Building seed filter... [0.038224s] Searching alignments... [67.363s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.47244s] Building query seed array... [2.29218s] Computing hash join... [1.96175s] Building seed filter... [0.039635s] Searching alignments... [47.9403s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26312s] Building query seed array... [1.93326s] Computing hash join... [1.94309s] Building seed filter... [0.037407s] Searching alignments... [49.5242s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26983s] Building query seed array... [1.73179s] Computing hash join... [1.87274s] Building seed filter... [0.039028s] Searching alignments... [45.5199s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.20402s] Building query seed array... [2.08365s] Computing hash join... [1.84353s] Building seed filter... [0.037231s] Searching alignments... [33.8991s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.26691s] Building query seed array... [2.07701s] Computing hash join... [1.85755s] Building seed filter... [0.039026s] Searching alignments... [40.1157s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.24965s] Building query seed array... [1.72727s] Computing hash join... [1.83166s] Building seed filter... [0.041991s] Searching alignments... [35.5241s] Deallocating buffers... [0.042391s] Opening temporary output file... [0.007147s] Computing alignments... [186.78s] Deallocating reference... [0.039071s] Loading reference sequences... [0.054338s] Deallocating buffers... [0.017467s] Joining output blocks... [380.173s] Deallocating queries... [0.058562s] Loading query sequences... [4.7e-05s] Closing the input file... [7.1e-05s] Closing the output file... [0.473971s] Closing the database file... [7.9e-05s] Deallocating taxonomy... [2.5e-05s] Total time = 10085.3s Reported 2269772335 pairwise alignments, 2269857433 HSPs. 4180384 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.07947s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.062551s] Opening the output file... [0.000354s] Loading query sequences... [93.4906s] Masking queries... [92.8013s] Building query seed set... [0.400788s] Algorithm: Double-indexed Building query histograms... [2.95929s] Allocating buffers... [0.000649s] Loading reference sequences... [47.278s] Masking reference... [59.3027s] Initializing temporary storage... [0.004519s] Building reference histograms... [12.4912s] Allocating buffers... [0.000193s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.94187s] Building query seed array... [1.95874s] Computing hash join... [4.23101s] Building seed filter... [0.077697s] Searching alignments... [234.7s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.403s] Building query seed array... [2.31508s] Computing hash join... [4.21566s] Building seed filter... [0.079396s] Searching alignments... [164.783s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4717s] Building query seed array... [2.29555s] Computing hash join... [4.2615s] Building seed filter... [0.075294s] Searching alignments... [148.738s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.66319s] Building query seed array... [1.90222s] Computing hash join... [4.2414s] Building seed filter... [0.077053s] Searching alignments... [132.238s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.66419s] Building query seed array... [1.84223s] Computing hash join... [4.06905s] Building seed filter... [0.068096s] Searching alignments... [134.193s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2334s] Building query seed array... [2.07839s] Computing hash join... [4.14523s] Building seed filter... [0.070645s] Searching alignments... [106.024s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.669s] Building query seed array... [2.21432s] Computing hash join... [4.11659s] Building seed filter... [0.068237s] Searching alignments... [129.573s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.56822s] Building query seed array... [1.81397s] Computing hash join... [4.13559s] Building seed filter... [0.073328s] Searching alignments... [98.0436s] Deallocating buffers... [0.106238s] Opening temporary output file... [0.000923s] Computing alignments... [540.748s] Deallocating reference... [0.088665s] Loading reference sequences... [393.701s] Masking reference... [57.9857s] Initializing temporary storage... [0.004932s] Building reference histograms... [12.2612s] Allocating buffers... [0.000188s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.97633s] Building query seed array... [2.01542s] Computing hash join... [4.22643s] Building seed filter... [0.081673s] Searching alignments... [172.9s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2981s] Building query seed array... [2.31363s] Computing hash join... [4.2285s] Building seed filter... [0.074665s] Searching alignments... [120.727s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4883s] Building query seed array... [2.49589s] Computing hash join... [4.18633s] Building seed filter... [0.073785s] Searching alignments... [116.761s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.66574s] Building query seed array... [1.89704s] Computing hash join... [4.27421s] Building seed filter... [0.072432s] Searching alignments... [100.09s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.61583s] Building query seed array... [1.74228s] Computing hash join... [4.05605s] Building seed filter... [0.071639s] Searching alignments... [123.34s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2128s] Building query seed array... [2.12752s] Computing hash join... [4.17377s] Building seed filter... [0.065406s] Searching alignments... [77.4942s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3556s] Building query seed array... [2.18585s] Computing hash join... [4.07237s] Building seed filter... [0.069739s] Searching alignments... [89.5541s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.01729s] Building query seed array... [1.87904s] Computing hash join... [4.08161s] Building seed filter... [0.077344s] Searching alignments... [75.0561s] Deallocating buffers... [0.108806s] Opening temporary output file... [0.001105s] Computing alignments... [389.105s] Deallocating reference... [0.086554s] Loading reference sequences... [398.04s] Masking reference... [57.888s] Initializing temporary storage... [0.004954s] Building reference histograms... [13.0181s] Allocating buffers... [0.000203s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.89266s] Building query seed array... [1.92591s] Computing hash join... [4.24549s] Building seed filter... [0.076238s] Searching alignments... [210.384s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2967s] Building query seed array... [2.34119s] Computing hash join... [4.23907s] Building seed filter... [0.074796s] Searching alignments... [165.391s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4651s] Building query seed array... [2.67142s] Computing hash join... [4.30137s] Building seed filter... [0.077441s] Searching alignments... [134.311s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.63671s] Building query seed array... [1.94092s] Computing hash join... [4.23782s] Building seed filter... [0.077924s] Searching alignments... [128.845s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.66171s] Building query seed array... [1.73304s] Computing hash join... [4.20625s] Building seed filter... [0.068457s] Searching alignments... [118.886s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1505s] Building query seed array... [2.12508s] Computing hash join... [4.1393s] Building seed filter... [0.069128s] Searching alignments... [93.4324s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3635s] Building query seed array... [2.24991s] Computing hash join... [4.13595s] Building seed filter... [0.069244s] Searching alignments... [112.386s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.56676s] Building query seed array... [1.72346s] Computing hash join... [4.17521s] Building seed filter... [0.072063s] Searching alignments... [86.2797s] Deallocating buffers... [0.12021s] Opening temporary output file... [0.000929s] Computing alignments... [506.831s] Deallocating reference... [0.081067s] Loading reference sequences... [369.94s] Masking reference... [57.9599s] Initializing temporary storage... [0.004861s] Building reference histograms... [12.3352s] Allocating buffers... [0.000189s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.92618s] Building query seed array... [1.93432s] Computing hash join... [4.2517s] Building seed filter... [0.07707s] Searching alignments... [222.428s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2643s] Building query seed array... [2.40146s] Computing hash join... [4.26529s] Building seed filter... [0.07587s] Searching alignments... [138.705s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4823s] Building query seed array... [2.34971s] Computing hash join... [4.29162s] Building seed filter... [0.07715s] Searching alignments... [104.371s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.64854s] Building query seed array... [1.90148s] Computing hash join... [4.21756s] Building seed filter... [0.07474s] Searching alignments... [120.939s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.70742s] Building query seed array... [1.73391s] Computing hash join... [4.1312s] Building seed filter... [0.068487s] Searching alignments... [132.307s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.253s] Building query seed array... [2.04264s] Computing hash join... [4.11587s] Building seed filter... [0.072694s] Searching alignments... [82.6226s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3773s] Building query seed array... [2.21126s] Computing hash join... [4.17103s] Building seed filter... [0.073291s] Searching alignments... [94.2154s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.71922s] Building query seed array... [1.72212s] Computing hash join... [4.09459s] Building seed filter... [0.076896s] Searching alignments... [63.6013s] Deallocating buffers... [0.110281s] Opening temporary output file... [0.001224s] Computing alignments... [392.857s] Deallocating reference... [0.080813s] Loading reference sequences... [354.991s] Masking reference... [58.0652s] Initializing temporary storage... [0.005157s] Building reference histograms... [13.0934s] Allocating buffers... [0.000203s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.98803s] Building query seed array... [1.96305s] Computing hash join... [4.25595s] Building seed filter... [0.078012s] Searching alignments... [150.004s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2688s] Building query seed array... [2.30604s] Computing hash join... [4.28181s] Building seed filter... [0.075605s] Searching alignments... [107.758s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4535s] Building query seed array... [2.29182s] Computing hash join... [4.30026s] Building seed filter... [0.077547s] Searching alignments... [101.772s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.64756s] Building query seed array... [1.8992s] Computing hash join... [4.27276s] Building seed filter... [0.077613s] Searching alignments... [105.275s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.60222s] Building query seed array... [1.77383s] Computing hash join... [4.0956s] Building seed filter... [0.070617s] Searching alignments... [82.7625s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2361s] Building query seed array... [2.45866s] Computing hash join... [4.21526s] Building seed filter... [0.075826s] Searching alignments... [76.0789s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3046s] Building query seed array... [2.12968s] Computing hash join... [4.13657s] Building seed filter... [0.074582s] Searching alignments... [78.7097s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.59491s] Building query seed array... [1.7258s] Computing hash join... [4.12399s] Building seed filter... [0.081277s] Searching alignments... [91.9268s] Deallocating buffers... [0.122482s] Opening temporary output file... [0.001114s] Computing alignments... [351.267s] Deallocating reference... [0.074692s] Loading reference sequences... [18.3424s] Masking reference... [21.5435s] Initializing temporary storage... [0.004775s] Building reference histograms... [4.5866s] Allocating buffers... [0.000184s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.30462s] Building query seed array... [1.96324s] Computing hash join... [1.96801s] Building seed filter... [0.047594s] Searching alignments... [75.2048s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.30823s] Building query seed array... [2.28456s] Computing hash join... [2.00546s] Building seed filter... [0.052262s] Searching alignments... [64.7004s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.31931s] Building query seed array... [2.32795s] Computing hash join... [1.97802s] Building seed filter... [0.046551s] Searching alignments... [46.2484s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.24484s] Building query seed array... [1.91072s] Computing hash join... [1.98106s] Building seed filter... [0.046406s] Searching alignments... [48.5024s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.24904s] Building query seed array... [1.76123s] Computing hash join... [1.86943s] Building seed filter... [0.043617s] Searching alignments... [42.8773s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.17879s] Building query seed array... [2.07141s] Computing hash join... [1.87874s] Building seed filter... [0.041357s] Searching alignments... [32.8498s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.28929s] Building query seed array... [2.07313s] Computing hash join... [1.9154s] Building seed filter... [0.04424s] Searching alignments... [38.5577s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23698s] Building query seed array... [1.72131s] Computing hash join... [1.88549s] Building seed filter... [0.043765s] Searching alignments... [34.7737s] Deallocating buffers... [0.042817s] Opening temporary output file... [0.050154s] Computing alignments... [179.071s] Deallocating reference... [0.029652s] Loading reference sequences... [0.040869s] Deallocating buffers... [0.015941s] Joining output blocks... [351.638s] Deallocating queries... [0.050071s] Loading query sequences... [4.2e-05s] Closing the input file... [5.5e-05s] Closing the output file... [0.423115s] Closing the database file... [3.1e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 10794.8s Reported 2212623913 pairwise alignments, 2212697858 HSPs. 4079306 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.054079s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.107952s] Opening the output file... [0.000759s] Loading query sequences... [58.3411s] Masking queries... [55.9044s] Building query seed set... [0.290916s] Algorithm: Double-indexed Building query histograms... [1.81122s] Allocating buffers... [0.000701s] Loading reference sequences... [417.366s] Masking reference... [59.293s] Initializing temporary storage... [0.004526s] Building reference histograms... [12.5662s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.96013s] Building query seed array... [1.27685s] Computing hash join... [3.80942s] Building seed filter... [0.051076s] Searching alignments... [65.0368s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2321s] Building query seed array... [1.47429s] Computing hash join... [3.72519s] Building seed filter... [0.045194s] Searching alignments... [60.2802s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.525s] Building query seed array... [1.52198s] Computing hash join... [3.80714s] Building seed filter... [0.04422s] Searching alignments... [46.3902s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.61088s] Building query seed array... [1.27573s] Computing hash join... [3.76741s] Building seed filter... [0.043116s] Searching alignments... [44.7593s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.71528s] Building query seed array... [1.06672s] Computing hash join... [3.64994s] Building seed filter... [0.043315s] Searching alignments... [32.4841s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1256s] Building query seed array... [1.24551s] Computing hash join... [3.60855s] Building seed filter... [0.039443s] Searching alignments... [34.1053s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.4016s] Building query seed array... [1.24691s] Computing hash join... [3.67421s] Building seed filter... [0.037592s] Searching alignments... [34.2733s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.59377s] Building query seed array... [1.20295s] Computing hash join... [3.59027s] Building seed filter... [0.043768s] Searching alignments... [31.6329s] Deallocating buffers... [0.111268s] Opening temporary output file... [0.000968s] Computing alignments... [154.03s] Deallocating reference... [0.098588s] Loading reference sequences... [383.486s] Masking reference... [58.6172s] Initializing temporary storage... [0.003976s] Building reference histograms... [12.8011s] Allocating buffers... [0.000192s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.99149s] Building query seed array... [1.32406s] Computing hash join... [3.77997s] Building seed filter... [0.054114s] Searching alignments... [60.6004s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.354s] Building query seed array... [1.47668s] Computing hash join... [3.79182s] Building seed filter... [0.048375s] Searching alignments... [53.7138s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.533s] Building query seed array... [1.50783s] Computing hash join... [3.73106s] Building seed filter... [0.050448s] Searching alignments... [44.6602s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.63652s] Building query seed array... [1.27334s] Computing hash join... [3.72566s] Building seed filter... [0.046921s] Searching alignments... [41.6714s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.63915s] Building query seed array... [1.13187s] Computing hash join... [3.68013s] Building seed filter... [0.040671s] Searching alignments... [30.4912s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2153s] Building query seed array... [1.31852s] Computing hash join... [3.69521s] Building seed filter... [0.042324s] Searching alignments... [28.8173s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4211s] Building query seed array... [1.29439s] Computing hash join... [3.62541s] Building seed filter... [0.0421s] Searching alignments... [29.8549s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.56781s] Building query seed array... [1.07268s] Computing hash join... [3.67196s] Building seed filter... [0.044212s] Searching alignments... [27.9061s] Deallocating buffers... [0.107355s] Opening temporary output file... [0.000972s] Computing alignments... [137.099s] Deallocating reference... [0.092148s] Loading reference sequences... [381.402s] Masking reference... [57.7602s] Initializing temporary storage... [0.005765s] Building reference histograms... [11.9061s] Allocating buffers... [0.000206s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.88366s] Building query seed array... [1.26418s] Computing hash join... [3.7194s] Building seed filter... [0.046844s] Searching alignments... [64.3822s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2767s] Building query seed array... [1.51526s] Computing hash join... [3.69674s] Building seed filter... [0.052448s] Searching alignments... [59.6806s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5393s] Building query seed array... [1.50927s] Computing hash join... [3.71775s] Building seed filter... [0.043547s] Searching alignments... [45.985s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.63641s] Building query seed array... [1.26736s] Computing hash join... [3.71428s] Building seed filter... [0.044617s] Searching alignments... [43.4702s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.62435s] Building query seed array... [1.09495s] Computing hash join... [3.6757s] Building seed filter... [0.046781s] Searching alignments... [31.5179s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.4035s] Building query seed array... [1.34727s] Computing hash join... [3.60096s] Building seed filter... [0.041652s] Searching alignments... [31.7649s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3773s] Building query seed array... [1.32069s] Computing hash join... [3.55999s] Building seed filter... [0.038855s] Searching alignments... [35.3714s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.58382s] Building query seed array... [1.14217s] Computing hash join... [3.57326s] Building seed filter... [0.04276s] Searching alignments... [29.1231s] Deallocating buffers... [0.113827s] Opening temporary output file... [0.000549s] Computing alignments... [153.045s] Deallocating reference... [0.082092s] Loading reference sequences... [358.966s] Masking reference... [57.8814s] Initializing temporary storage... [0.003981s] Building reference histograms... [12.8127s] Allocating buffers... [0.0002s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.91846s] Building query seed array... [1.27753s] Computing hash join... [3.76988s] Building seed filter... [0.056205s] Searching alignments... [66.4295s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2631s] Building query seed array... [1.52206s] Computing hash join... [3.72489s] Building seed filter... [0.050405s] Searching alignments... [60.581s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.6114s] Building query seed array... [1.52337s] Computing hash join... [3.72739s] Building seed filter... [0.050698s] Searching alignments... [47.1447s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.66653s] Building query seed array... [1.28736s] Computing hash join... [3.72887s] Building seed filter... [0.043376s] Searching alignments... [45.3345s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.66624s] Building query seed array... [1.08243s] Computing hash join... [3.64763s] Building seed filter... [0.044724s] Searching alignments... [33.5688s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1281s] Building query seed array... [1.25052s] Computing hash join... [3.62385s] Building seed filter... [0.043672s] Searching alignments... [34.7286s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3966s] Building query seed array... [1.29693s] Computing hash join... [3.55328s] Building seed filter... [0.038745s] Searching alignments... [34.7782s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.61959s] Building query seed array... [1.09842s] Computing hash join... [3.57701s] Building seed filter... [0.04423s] Searching alignments... [30.8391s] Deallocating buffers... [0.119714s] Opening temporary output file... [0.000879s] Computing alignments... [154.691s] Deallocating reference... [0.077795s] Loading reference sequences... [348.933s] Masking reference... [58.1342s] Initializing temporary storage... [0.004099s] Building reference histograms... [11.9578s] Allocating buffers... [0.00019s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.83895s] Building query seed array... [1.26053s] Computing hash join... [3.75664s] Building seed filter... [0.054721s] Searching alignments... [62.6722s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.4183s] Building query seed array... [1.48379s] Computing hash join... [3.86325s] Building seed filter... [0.0564s] Searching alignments... [54.3891s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.8837s] Building query seed array... [1.50195s] Computing hash join... [3.7607s] Building seed filter... [0.051366s] Searching alignments... [45.824s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.11554s] Building query seed array... [1.36967s] Computing hash join... [3.75903s] Building seed filter... [0.047856s] Searching alignments... [42.4437s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.89399s] Building query seed array... [1.21609s] Computing hash join... [3.64441s] Building seed filter... [0.045117s] Searching alignments... [30.32s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1819s] Building query seed array... [1.26834s] Computing hash join... [3.65831s] Building seed filter... [0.043477s] Searching alignments... [29.0724s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.392s] Building query seed array... [1.20787s] Computing hash join... [3.57966s] Building seed filter... [0.043944s] Searching alignments... [30.927s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.62929s] Building query seed array... [1.09512s] Computing hash join... [3.59102s] Building seed filter... [0.05496s] Searching alignments... [28.2688s] Deallocating buffers... [0.107194s] Opening temporary output file... [0.00096s] Computing alignments... [141.217s] Deallocating reference... [0.072791s] Loading reference sequences... [149.184s] Masking reference... [21.3323s] Initializing temporary storage... [0.00379s] Building reference histograms... [4.7371s] Allocating buffers... [0.000192s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.27235s] Building query seed array... [1.33911s] Computing hash join... [1.57466s] Building seed filter... [0.030865s] Searching alignments... [26.9293s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.29014s] Building query seed array... [1.48853s] Computing hash join... [1.57056s] Building seed filter... [0.028251s] Searching alignments... [25.2203s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30855s] Building query seed array... [1.43138s] Computing hash join... [1.55217s] Building seed filter... [0.028775s] Searching alignments... [19.4799s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.28379s] Building query seed array... [1.24251s] Computing hash join... [1.59288s] Building seed filter... [0.033633s] Searching alignments... [18.6741s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.24614s] Building query seed array... [1.13554s] Computing hash join... [1.56427s] Building seed filter... [0.026108s] Searching alignments... [13.1921s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.21588s] Building query seed array... [1.23415s] Computing hash join... [1.52935s] Building seed filter... [0.030926s] Searching alignments... [13.4393s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.28431s] Building query seed array... [1.21578s] Computing hash join... [1.45752s] Building seed filter... [0.034587s] Searching alignments... [13.4891s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.21505s] Building query seed array... [1.08122s] Computing hash join... [1.47167s] Building seed filter... [0.030414s] Searching alignments... [12.5599s] Deallocating buffers... [0.044088s] Opening temporary output file... [0.020514s] Computing alignments... [63.5958s] Deallocating reference... [0.038551s] Loading reference sequences... [0.018531s] Deallocating buffers... [0.009466s] Joining output blocks... [51.3828s] Deallocating queries... [0.033143s] Loading query sequences... [3.1e-05s] Closing the input file... [5.9e-05s] Closing the output file... [0.435482s] Closing the database file... [2.9e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 5877.73s Reported 168619152 pairwise alignments, 168639862 HSPs. 2584835 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.073066s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.065642s] Opening the output file... [0.000345s] Loading query sequences... [58.0398s] Masking queries... [40.1151s] Building query seed set... [0.2371s] Algorithm: Double-indexed Building query histograms... [1.45927s] Allocating buffers... [0.0007s] Loading reference sequences... [405.878s] Masking reference... [59.2245s] Initializing temporary storage... [0.003979s] Building reference histograms... [13.0839s] Allocating buffers... [0.000194s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.96986s] Building query seed array... [0.939058s] Computing hash join... [3.86482s] Building seed filter... [0.05809s] Searching alignments... [65.0274s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2569s] Building query seed array... [1.09836s] Computing hash join... [3.74082s] Building seed filter... [0.04918s] Searching alignments... [58.7663s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5283s] Building query seed array... [1.04473s] Computing hash join... [3.7229s] Building seed filter... [0.055294s] Searching alignments... [46.1822s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.64948s] Building query seed array... [0.922881s] Computing hash join... [3.70025s] Building seed filter... [0.049704s] Searching alignments... [44.1266s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.63906s] Building query seed array... [0.81046s] Computing hash join... [3.62328s] Building seed filter... [0.044828s] Searching alignments... [32.1555s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1368s] Building query seed array... [1.02848s] Computing hash join... [3.58836s] Building seed filter... [0.041668s] Searching alignments... [33.5597s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3658s] Building query seed array... [0.989623s] Computing hash join... [3.59339s] Building seed filter... [0.04306s] Searching alignments... [32.7544s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.58063s] Building query seed array... [0.821543s] Computing hash join... [3.64851s] Building seed filter... [0.048058s] Searching alignments... [32.014s] Deallocating buffers... [0.12285s] Opening temporary output file... [0.001017s] Computing alignments... [150.837s] Deallocating reference... [0.097565s] Loading reference sequences... [394.122s] Masking reference... [57.9236s] Initializing temporary storage... [0.003827s] Building reference histograms... [12.84s] Allocating buffers... [0.000188s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.95412s] Building query seed array... [0.978529s] Computing hash join... [3.77887s] Building seed filter... [0.059644s] Searching alignments... [60.1436s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3025s] Building query seed array... [1.1223s] Computing hash join... [3.7747s] Building seed filter... [0.05126s] Searching alignments... [51.7066s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5823s] Building query seed array... [1.13081s] Computing hash join... [3.72516s] Building seed filter... [0.05763s] Searching alignments... [43.5925s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.63884s] Building query seed array... [0.921231s] Computing hash join... [3.6979s] Building seed filter... [0.055654s] Searching alignments... [41.5023s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.71884s] Building query seed array... [0.915241s] Computing hash join... [3.61469s] Building seed filter... [0.046168s] Searching alignments... [29.7927s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.0865s] Building query seed array... [1.02004s] Computing hash join... [3.62228s] Building seed filter... [0.048572s] Searching alignments... [28.4113s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4765s] Building query seed array... [1.02415s] Computing hash join... [3.64391s] Building seed filter... [0.050035s] Searching alignments... [29.6127s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.61718s] Building query seed array... [0.815975s] Computing hash join... [3.66187s] Building seed filter... [0.044516s] Searching alignments... [27.7701s] Deallocating buffers... [0.108243s] Opening temporary output file... [0.000585s] Computing alignments... [134.525s] Deallocating reference... [0.092799s] Loading reference sequences... [378.768s] Masking reference... [57.9654s] Initializing temporary storage... [0.004315s] Building reference histograms... [12.6095s] Allocating buffers... [0.00019s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.95452s] Building query seed array... [0.928474s] Computing hash join... [3.7452s] Building seed filter... [0.056107s] Searching alignments... [64.287s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3234s] Building query seed array... [1.10341s] Computing hash join... [3.72798s] Building seed filter... [0.052631s] Searching alignments... [58.109s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4524s] Building query seed array... [1.12323s] Computing hash join... [3.72427s] Building seed filter... [0.055291s] Searching alignments... [45.824s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.05321s] Building query seed array... [1.00982s] Computing hash join... [3.72518s] Building seed filter... [0.05004s] Searching alignments... [43.2485s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.64544s] Building query seed array... [0.816639s] Computing hash join... [3.61975s] Building seed filter... [0.046872s] Searching alignments... [30.897s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.3035s] Building query seed array... [1.01913s] Computing hash join... [3.60956s] Building seed filter... [0.045565s] Searching alignments... [31.8289s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.6043s] Building query seed array... [1.0364s] Computing hash join... [3.66647s] Building seed filter... [0.045734s] Searching alignments... [31.5662s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.60749s] Building query seed array... [0.815473s] Computing hash join... [3.63004s] Building seed filter... [0.058485s] Searching alignments... [29.4169s] Deallocating buffers... [0.123043s] Opening temporary output file... [0.001114s] Computing alignments... [149.235s] Deallocating reference... [0.071341s] Loading reference sequences... [356.48s] Masking reference... [57.9903s] Initializing temporary storage... [0.004115s] Building reference histograms... [12.5319s] Allocating buffers... [0.000189s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.94411s] Building query seed array... [0.930463s] Computing hash join... [3.74299s] Building seed filter... [0.05921s] Searching alignments... [67.2919s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3014s] Building query seed array... [1.14087s] Computing hash join... [3.7738s] Building seed filter... [0.054542s] Searching alignments... [59.8699s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5068s] Building query seed array... [1.05273s] Computing hash join... [3.72328s] Building seed filter... [0.051804s] Searching alignments... [46.7886s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.6549s] Building query seed array... [0.970909s] Computing hash join... [3.73135s] Building seed filter... [0.048768s] Searching alignments... [45.4982s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.77782s] Building query seed array... [0.819375s] Computing hash join... [3.60355s] Building seed filter... [0.048031s] Searching alignments... [32.4939s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1741s] Building query seed array... [0.997836s] Computing hash join... [3.68362s] Building seed filter... [0.047733s] Searching alignments... [34.0771s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.7787s] Building query seed array... [1.07356s] Computing hash join... [3.72064s] Building seed filter... [0.047804s] Searching alignments... [35.6211s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.64494s] Building query seed array... [0.83081s] Computing hash join... [3.63492s] Building seed filter... [0.046371s] Searching alignments... [30.4053s] Deallocating buffers... [0.122412s] Opening temporary output file... [0.000677s] Computing alignments... [151.869s] Deallocating reference... [0.075871s] Loading reference sequences... [347.245s] Masking reference... [58.073s] Initializing temporary storage... [0.004652s] Building reference histograms... [12.6651s] Allocating buffers... [0.00019s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.26418s] Building query seed array... [1.01753s] Computing hash join... [3.79317s] Building seed filter... [0.062313s] Searching alignments... [61.9039s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.443s] Building query seed array... [1.10864s] Computing hash join... [3.73506s] Building seed filter... [0.060046s] Searching alignments... [51.2464s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4984s] Building query seed array... [1.04762s] Computing hash join... [3.75315s] Building seed filter... [0.054226s] Searching alignments... [44.8675s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.62308s] Building query seed array... [0.914895s] Computing hash join... [3.83331s] Building seed filter... [0.049393s] Searching alignments... [41.8528s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.82032s] Building query seed array... [0.833797s] Computing hash join... [3.60153s] Building seed filter... [0.047615s] Searching alignments... [31.2096s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.0898s] Building query seed array... [0.945847s] Computing hash join... [3.64191s] Building seed filter... [0.046363s] Searching alignments... [28.5574s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.422s] Building query seed array... [0.936452s] Computing hash join... [3.62427s] Building seed filter... [0.053034s] Searching alignments... [31.0129s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.55468s] Building query seed array... [0.810338s] Computing hash join... [3.71711s] Building seed filter... [0.059788s] Searching alignments... [28.3716s] Deallocating buffers... [0.108727s] Opening temporary output file... [0.001005s] Computing alignments... [141.347s] Deallocating reference... [0.078363s] Loading reference sequences... [152.972s] Masking reference... [21.2218s] Initializing temporary storage... [0.005097s] Building reference histograms... [4.7247s] Allocating buffers... [0.000184s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.25359s] Building query seed array... [0.930297s] Computing hash join... [1.54293s] Building seed filter... [0.034009s] Searching alignments... [26.7894s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21617s] Building query seed array... [1.04877s] Computing hash join... [1.54639s] Building seed filter... [0.033077s] Searching alignments... [24.1235s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.31295s] Building query seed array... [1.06033s] Computing hash join... [1.54363s] Building seed filter... [0.03313s] Searching alignments... [19.4776s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.28383s] Building query seed array... [0.918874s] Computing hash join... [1.5423s] Building seed filter... [0.032824s] Searching alignments... [18.6128s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25136s] Building query seed array... [0.84919s] Computing hash join... [1.5024s] Building seed filter... [0.029455s] Searching alignments... [13.0763s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.24766s] Building query seed array... [0.963464s] Computing hash join... [1.47644s] Building seed filter... [0.029181s] Searching alignments... [13.1782s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.3341s] Building query seed array... [0.983976s] Computing hash join... [1.523s] Building seed filter... [0.030251s] Searching alignments... [13.1764s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22035s] Building query seed array... [0.829565s] Computing hash join... [1.50833s] Building seed filter... [0.029869s] Searching alignments... [12.5392s] Deallocating buffers... [0.042056s] Opening temporary output file... [0.013248s] Computing alignments... [63.3091s] Deallocating reference... [0.028813s] Loading reference sequences... [0.007972s] Deallocating buffers... [0.004707s] Joining output blocks... [51.9868s] Deallocating queries... [0.027368s] Loading query sequences... [2.9e-05s] Closing the input file... [4.8e-05s] Closing the output file... [0.639801s] Closing the database file... [4.6e-05s] Deallocating taxonomy... [2.1e-05s] Total time = 5807.8s Reported 175864874 pairwise alignments, 175880024 HSPs. 2607665 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.206319s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.171927s] Opening the output file... [0.000337s] Loading query sequences... [146.985s] Masking queries... [102.583s] Building query seed set... [0.516241s] Algorithm: Double-indexed Building query histograms... [3.68136s] Allocating buffers... [0.000685s] Loading reference sequences... [49.4725s] Masking reference... [57.7953s] Initializing temporary storage... [0.005233s] Building reference histograms... [13.3825s] Allocating buffers... [0.000205s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.99915s] Building query seed array... [2.46742s] Computing hash join... [4.41481s] Building seed filter... [0.105345s] Searching alignments... [114.136s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2663s] Building query seed array... [2.65725s] Computing hash join... [4.43891s] Building seed filter... [0.105855s] Searching alignments... [77.4605s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.5209s] Building query seed array... [2.70845s] Computing hash join... [4.4566s] Building seed filter... [0.123786s] Searching alignments... [77.5299s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.67154s] Building query seed array... [2.43592s] Computing hash join... [4.41398s] Building seed filter... [0.099404s] Searching alignments... [66.2111s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.70938s] Building query seed array... [2.16637s] Computing hash join... [4.34941s] Building seed filter... [0.097094s] Searching alignments... [85.513s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1587s] Building query seed array... [2.57546s] Computing hash join... [4.29921s] Building seed filter... [0.101016s] Searching alignments... [50.9719s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3803s] Building query seed array... [2.51295s] Computing hash join... [4.32031s] Building seed filter... [0.096646s] Searching alignments... [60.7696s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.54674s] Building query seed array... [2.17309s] Computing hash join... [4.23452s] Building seed filter... [0.098757s] Searching alignments... [48.6578s] Deallocating buffers... [0.122507s] Opening temporary output file... [0.001054s] Computing alignments... [231.129s] Deallocating reference... [0.080753s] Loading reference sequences... [395.234s] Masking reference... [57.724s] Initializing temporary storage... [0.004598s] Building reference histograms... [13.5527s] Allocating buffers... [0.00019s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.96137s] Building query seed array... [2.44899s] Computing hash join... [4.38738s] Building seed filter... [0.104675s] Searching alignments... [88.9028s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.5286s] Building query seed array... [2.83508s] Computing hash join... [4.34007s] Building seed filter... [0.102747s] Searching alignments... [60.5887s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5314s] Building query seed array... [2.83141s] Computing hash join... [4.35007s] Building seed filter... [0.107038s] Searching alignments... [62.6922s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.80612s] Building query seed array... [2.39755s] Computing hash join... [4.40281s] Building seed filter... [0.108725s] Searching alignments... [54.9459s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.67209s] Building query seed array... [2.15775s] Computing hash join... [4.27097s] Building seed filter... [0.096326s] Searching alignments... [75.3043s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1758s] Building query seed array... [2.50969s] Computing hash join... [4.3099s] Building seed filter... [0.097223s] Searching alignments... [42.6163s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.403s] Building query seed array... [2.50735s] Computing hash join... [4.27784s] Building seed filter... [0.1076s] Searching alignments... [48.8494s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.563s] Building query seed array... [2.19683s] Computing hash join... [4.22798s] Building seed filter... [0.095041s] Searching alignments... [39.2579s] Deallocating buffers... [0.110628s] Opening temporary output file... [0.001034s] Computing alignments... [180.077s] Deallocating reference... [0.070206s] Loading reference sequences... [394.069s] Masking reference... [57.7532s] Initializing temporary storage... [0.004152s] Building reference histograms... [12.3814s] Allocating buffers... [0.0002s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.96985s] Building query seed array... [2.48885s] Computing hash join... [4.40608s] Building seed filter... [0.109398s] Searching alignments... [104.509s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3322s] Building query seed array... [2.73122s] Computing hash join... [4.4314s] Building seed filter... [0.105502s] Searching alignments... [72.3573s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.6451s] Building query seed array... [2.7682s] Computing hash join... [4.41649s] Building seed filter... [0.109312s] Searching alignments... [71.999s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.66657s] Building query seed array... [2.3286s] Computing hash join... [4.40105s] Building seed filter... [0.102373s] Searching alignments... [61.9515s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.62388s] Building query seed array... [2.24985s] Computing hash join... [4.23096s] Building seed filter... [0.092783s] Searching alignments... [92.4501s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2283s] Building query seed array... [2.50336s] Computing hash join... [4.28945s] Building seed filter... [0.099552s] Searching alignments... [49.1977s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4134s] Building query seed array... [2.62603s] Computing hash join... [4.42002s] Building seed filter... [0.093605s] Searching alignments... [55.3181s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.71162s] Building query seed array... [2.22139s] Computing hash join... [4.27651s] Building seed filter... [0.098605s] Searching alignments... [46.5413s] Deallocating buffers... [0.105295s] Opening temporary output file... [0.000547s] Computing alignments... [221.838s] Deallocating reference... [0.070983s] Loading reference sequences... [371.548s] Masking reference... [57.8979s] Initializing temporary storage... [0.0036s] Building reference histograms... [13.1928s] Allocating buffers... [0.000279s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.92334s] Building query seed array... [2.42792s] Computing hash join... [4.35058s] Building seed filter... [0.110702s] Searching alignments... [77.2962s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3187s] Building query seed array... [2.72738s] Computing hash join... [4.53237s] Building seed filter... [0.111054s] Searching alignments... [56.7729s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4811s] Building query seed array... [2.80411s] Computing hash join... [4.55151s] Building seed filter... [0.105013s] Searching alignments... [54.4961s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.72034s] Building query seed array... [2.41893s] Computing hash join... [4.38361s] Building seed filter... [0.100522s] Searching alignments... [49.1702s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.67187s] Building query seed array... [2.24913s] Computing hash join... [4.23318s] Building seed filter... [0.095372s] Searching alignments... [72.184s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2176s] Building query seed array... [2.48646s] Computing hash join... [4.30062s] Building seed filter... [0.102591s] Searching alignments... [38.2679s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4713s] Building query seed array... [2.53923s] Computing hash join... [4.34691s] Building seed filter... [0.094055s] Searching alignments... [50.5845s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.56345s] Building query seed array... [2.2133s] Computing hash join... [4.23219s] Building seed filter... [0.096451s] Searching alignments... [34.1001s] Deallocating buffers... [0.104901s] Opening temporary output file... [0.000925s] Computing alignments... [166.417s] Deallocating reference... [0.08135s] Loading reference sequences... [347.725s] Masking reference... [57.8422s] Initializing temporary storage... [0.004064s] Building reference histograms... [12.2845s] Allocating buffers... [0.000189s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.85069s] Building query seed array... [2.41944s] Computing hash join... [4.40804s] Building seed filter... [0.108737s] Searching alignments... [76.8416s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.1737s] Building query seed array... [2.73745s] Computing hash join... [4.42026s] Building seed filter... [0.110673s] Searching alignments... [56.5366s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.5154s] Building query seed array... [2.71209s] Computing hash join... [4.42187s] Building seed filter... [0.106688s] Searching alignments... [56.2974s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.96233s] Building query seed array... [2.6778s] Computing hash join... [4.41387s] Building seed filter... [0.110663s] Searching alignments... [49.4775s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.59517s] Building query seed array... [2.22856s] Computing hash join... [4.37133s] Building seed filter... [0.095147s] Searching alignments... [65.8356s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1681s] Building query seed array... [2.4342s] Computing hash join... [4.34186s] Building seed filter... [0.099179s] Searching alignments... [38.1352s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3179s] Building query seed array... [2.54123s] Computing hash join... [4.25727s] Building seed filter... [0.10208s] Searching alignments... [42.4277s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.5294s] Building query seed array... [2.19073s] Computing hash join... [4.34384s] Building seed filter... [0.104186s] Searching alignments... [34.6464s] Deallocating buffers... [0.106289s] Opening temporary output file... [0.000936s] Computing alignments... [157.397s] Deallocating reference... [0.064291s] Loading reference sequences... [151.213s] Masking reference... [21.1337s] Initializing temporary storage... [0.00451s] Building reference histograms... [5.05511s] Allocating buffers... [0.000204s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.35738s] Building query seed array... [2.43785s] Computing hash join... [1.9718s] Building seed filter... [0.064797s] Searching alignments... [36.7331s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22471s] Building query seed array... [2.65299s] Computing hash join... [2.02061s] Building seed filter... [0.058982s] Searching alignments... [26.0528s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.36256s] Building query seed array... [2.69537s] Computing hash join... [1.99297s] Building seed filter... [0.06809s] Searching alignments... [25.1444s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.28981s] Building query seed array... [2.33475s] Computing hash join... [2.0186s] Building seed filter... [0.060782s] Searching alignments... [22.4012s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26646s] Building query seed array... [2.17475s] Computing hash join... [1.94176s] Building seed filter... [0.055646s] Searching alignments... [23.8268s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.38675s] Building query seed array... [2.52882s] Computing hash join... [1.8855s] Building seed filter... [0.054798s] Searching alignments... [17.255s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.24842s] Building query seed array... [2.55353s] Computing hash join... [1.92915s] Building seed filter... [0.058814s] Searching alignments... [19.4259s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.24891s] Building query seed array... [2.12695s] Computing hash join... [1.91604s] Building seed filter... [0.062208s] Searching alignments... [16.6428s] Deallocating buffers... [0.043034s] Opening temporary output file... [0.015247s] Computing alignments... [105.491s] Deallocating reference... [0.028715s] Loading reference sequences... [0.027105s] Deallocating buffers... [0.011943s] Joining output blocks... [116.57s] Deallocating queries... [0.074859s] Loading query sequences... [3.3e-05s] Closing the input file... [4.9e-05s] Closing the output file... [0.483639s] Closing the database file... [4.1e-05s] Deallocating taxonomy... [1.4e-05s] Total time = 6919.69s Reported 876197980 pairwise alignments, 876230920 HSPs. 2195607 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.072081s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.095428s] Opening the output file... [0.000766s] Loading query sequences... [148.63s] Masking queries... [147.263s] Building query seed set... [0.568258s] Algorithm: Double-indexed Building query histograms... [3.71292s] Allocating buffers... [0.000508s] Loading reference sequences... [415.465s] Masking reference... [58.2379s] Initializing temporary storage... [0.004384s] Building reference histograms... [12.0194s] Allocating buffers... [0.000214s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.90404s] Building query seed array... [2.45438s] Computing hash join... [4.46576s] Building seed filter... [0.108037s] Searching alignments... [110.781s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2266s] Building query seed array... [2.7474s] Computing hash join... [4.43999s] Building seed filter... [0.112427s] Searching alignments... [77.3695s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.7726s] Building query seed array... [2.86215s] Computing hash join... [4.49533s] Building seed filter... [0.126089s] Searching alignments... [75.2759s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.63568s] Building query seed array... [2.39021s] Computing hash join... [4.51413s] Building seed filter... [0.114122s] Searching alignments... [65.3065s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.65042s] Building query seed array... [2.25103s] Computing hash join... [4.30382s] Building seed filter... [0.098211s] Searching alignments... [82.3458s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2187s] Building query seed array... [2.42893s] Computing hash join... [4.32339s] Building seed filter... [0.104792s] Searching alignments... [50.2015s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.379s] Building query seed array... [2.51977s] Computing hash join... [4.34505s] Building seed filter... [0.098314s] Searching alignments... [59.5988s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.56684s] Building query seed array... [2.14836s] Computing hash join... [4.36924s] Building seed filter... [0.112552s] Searching alignments... [48.5936s] Deallocating buffers... [0.115238s] Opening temporary output file... [0.001033s] Computing alignments... [226.917s] Deallocating reference... [0.096301s] Loading reference sequences... [403.293s] Masking reference... [59.1624s] Initializing temporary storage... [0.004513s] Building reference histograms... [12.7364s] Allocating buffers... [0.000198s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.28137s] Building query seed array... [2.49215s] Computing hash join... [4.41237s] Building seed filter... [0.115133s] Searching alignments... [88.2222s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2259s] Building query seed array... [2.79183s] Computing hash join... [4.44384s] Building seed filter... [0.103709s] Searching alignments... [61.1825s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5443s] Building query seed array... [2.78827s] Computing hash join... [4.47094s] Building seed filter... [0.121958s] Searching alignments... [61.7296s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.65173s] Building query seed array... [2.42271s] Computing hash join... [4.42975s] Building seed filter... [0.107891s] Searching alignments... [54.0671s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.90575s] Building query seed array... [2.85129s] Computing hash join... [4.38564s] Building seed filter... [0.102771s] Searching alignments... [72.1252s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.5015s] Building query seed array... [2.56315s] Computing hash join... [4.34853s] Building seed filter... [0.102442s] Searching alignments... [42.031s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.644s] Building query seed array... [2.5985s] Computing hash join... [4.30214s] Building seed filter... [0.103697s] Searching alignments... [47.6814s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.5638s] Building query seed array... [2.13497s] Computing hash join... [4.27968s] Building seed filter... [0.104631s] Searching alignments... [39.3824s] Deallocating buffers... [0.110556s] Opening temporary output file... [0.000996s] Computing alignments... [177.211s] Deallocating reference... [0.081137s] Loading reference sequences... [41.9527s] Masking reference... [57.7684s] Initializing temporary storage... [0.02148s] Building reference histograms... [11.7136s] Allocating buffers... [0.000189s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.02211s] Building query seed array... [2.47067s] Computing hash join... [4.43395s] Building seed filter... [0.113147s] Searching alignments... [104.097s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.575s] Building query seed array... [2.86034s] Computing hash join... [4.44744s] Building seed filter... [0.109545s] Searching alignments... [72.313s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.9808s] Building query seed array... [2.86329s] Computing hash join... [4.44172s] Building seed filter... [0.123959s] Searching alignments... [70.8107s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.82678s] Building query seed array... [2.47548s] Computing hash join... [4.44634s] Building seed filter... [0.116481s] Searching alignments... [61.1758s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.6848s] Building query seed array... [2.1567s] Computing hash join... [4.2883s] Building seed filter... [0.100191s] Searching alignments... [90.5976s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1367s] Building query seed array... [2.57138s] Computing hash join... [4.36036s] Building seed filter... [0.105209s] Searching alignments... [48.382s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3982s] Building query seed array... [2.54802s] Computing hash join... [4.43096s] Building seed filter... [0.10261s] Searching alignments... [54.1455s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.55791s] Building query seed array... [2.24501s] Computing hash join... [4.34914s] Building seed filter... [0.109605s] Searching alignments... [47.1047s] Deallocating buffers... [0.106306s] Opening temporary output file... [0.000541s] Computing alignments... [217.061s] Deallocating reference... [0.082025s] Loading reference sequences... [47.5591s] Masking reference... [57.86s] Initializing temporary storage... [0.005288s] Building reference histograms... [12.4598s] Allocating buffers... [0.000194s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.00825s] Building query seed array... [2.43824s] Computing hash join... [4.44449s] Building seed filter... [0.108832s] Searching alignments... [76.49s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3149s] Building query seed array... [2.78121s] Computing hash join... [4.43552s] Building seed filter... [0.108098s] Searching alignments... [57.2678s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.0216s] Building query seed array... [2.79921s] Computing hash join... [4.58406s] Building seed filter... [0.104465s] Searching alignments... [53.6296s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.6448s] Building query seed array... [2.42482s] Computing hash join... [4.41184s] Building seed filter... [0.110943s] Searching alignments... [49.5336s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.66188s] Building query seed array... [2.24221s] Computing hash join... [4.27622s] Building seed filter... [0.106349s] Searching alignments... [69.9173s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2065s] Building query seed array... [2.50345s] Computing hash join... [4.32292s] Building seed filter... [0.115363s] Searching alignments... [38.151s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.6701s] Building query seed array... [2.65326s] Computing hash join... [4.30958s] Building seed filter... [0.10926s] Searching alignments... [51.4458s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.6215s] Building query seed array... [2.13766s] Computing hash join... [4.38967s] Building seed filter... [0.109191s] Searching alignments... [33.9734s] Deallocating buffers... [0.123537s] Opening temporary output file... [0.000977s] Computing alignments... [163.22s] Deallocating reference... [0.066403s] Loading reference sequences... [46.7236s] Masking reference... [58.5478s] Initializing temporary storage... [0.005305s] Building reference histograms... [11.839s] Allocating buffers... [0.00021s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.94436s] Building query seed array... [2.43372s] Computing hash join... [4.47542s] Building seed filter... [0.112237s] Searching alignments... [77.6778s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.3634s] Building query seed array... [2.81755s] Computing hash join... [4.46213s] Building seed filter... [0.114119s] Searching alignments... [55.705s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.5431s] Building query seed array... [2.69055s] Computing hash join... [4.49128s] Building seed filter... [0.125344s] Searching alignments... [55.5117s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.63364s] Building query seed array... [2.44561s] Computing hash join... [4.49495s] Building seed filter... [0.106197s] Searching alignments... [48.5249s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.67351s] Building query seed array... [2.26588s] Computing hash join... [4.29029s] Building seed filter... [0.108809s] Searching alignments... [63.511s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.5365s] Building query seed array... [2.64291s] Computing hash join... [4.29405s] Building seed filter... [0.101681s] Searching alignments... [37.293s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3971s] Building query seed array... [2.89549s] Computing hash join... [4.42149s] Building seed filter... [0.10721s] Searching alignments... [42.6855s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.61022s] Building query seed array... [2.22695s] Computing hash join... [4.29322s] Building seed filter... [0.109249s] Searching alignments... [34.8721s] Deallocating buffers... [0.10537s] Opening temporary output file... [0.001011s] Computing alignments... [152.149s] Deallocating reference... [0.078578s] Loading reference sequences... [18.5175s] Masking reference... [21.7634s] Initializing temporary storage... [0.004129s] Building reference histograms... [4.72349s] Allocating buffers... [0.000308s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.28887s] Building query seed array... [2.42135s] Computing hash join... [1.98436s] Building seed filter... [0.065921s] Searching alignments... [36.5181s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.24895s] Building query seed array... [2.70753s] Computing hash join... [2.09339s] Building seed filter... [0.063728s] Searching alignments... [25.7766s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.33372s] Building query seed array... [2.79457s] Computing hash join... [2.0484s] Building seed filter... [0.064123s] Searching alignments... [24.4808s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26947s] Building query seed array... [2.33271s] Computing hash join... [2.02987s] Building seed filter... [0.063303s] Searching alignments... [21.8396s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.45867s] Building query seed array... [2.15636s] Computing hash join... [1.9531s] Building seed filter... [0.065686s] Searching alignments... [23.5058s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.26187s] Building query seed array... [2.50253s] Computing hash join... [1.93116s] Building seed filter... [0.059508s] Searching alignments... [16.9876s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.25952s] Building query seed array... [2.51449s] Computing hash join... [1.91944s] Building seed filter... [0.061588s] Searching alignments... [19.2655s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.2289s] Building query seed array... [2.16775s] Computing hash join... [1.93025s] Building seed filter... [0.060716s] Searching alignments... [16.3952s] Deallocating buffers... [0.051261s] Opening temporary output file... [0.01356s] Computing alignments... [103.798s] Deallocating reference... [0.028329s] Loading reference sequences... [0.039656s] Deallocating buffers... [0.014403s] Joining output blocks... [114.731s] Deallocating queries... [0.084105s] Loading query sequences... [3.6e-05s] Closing the input file... [6.1e-05s] Closing the output file... [0.428811s] Closing the database file... [7.4e-05s] Deallocating taxonomy... [2.6e-05s] Total time = 6178.06s Reported 866911472 pairwise alignments, 866941506 HSPs. 2184335 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.073486s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.08354s] Opening the output file... [0.000335s] Loading query sequences... [86.4395s] Masking queries... [73.1436s] Building query seed set... [0.317204s] Algorithm: Double-indexed Building query histograms... [3.07146s] Allocating buffers... [0.000694s] Loading reference sequences... [45.4698s] Masking reference... [57.5501s] Initializing temporary storage... [0.005089s] Building reference histograms... [12.6349s] Allocating buffers... [0.000208s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.97954s] Building query seed array... [2.0711s] Computing hash join... [4.44295s] Building seed filter... [0.082108s] Searching alignments... [171.094s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2898s] Building query seed array... [2.43091s] Computing hash join... [4.31334s] Building seed filter... [0.079865s] Searching alignments... [113.113s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4647s] Building query seed array... [2.47731s] Computing hash join... [4.38505s] Building seed filter... [0.078203s] Searching alignments... [105.747s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.6982s] Building query seed array... [2.05199s] Computing hash join... [4.34517s] Building seed filter... [0.080349s] Searching alignments... [94.7801s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.60738s] Building query seed array... [1.86922s] Computing hash join... [4.19776s] Building seed filter... [0.076836s] Searching alignments... [87.4834s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2405s] Building query seed array... [2.18082s] Computing hash join... [4.32418s] Building seed filter... [0.07835s] Searching alignments... [78.9631s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.332s] Building query seed array... [2.2829s] Computing hash join... [4.17634s] Building seed filter... [0.077723s] Searching alignments... [80.4953s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.54376s] Building query seed array... [1.82511s] Computing hash join... [4.18289s] Building seed filter... [0.076952s] Searching alignments... [67.8411s] Deallocating buffers... [0.122068s] Opening temporary output file... [0.000949s] Computing alignments... [337.697s] Deallocating reference... [0.088833s] Loading reference sequences... [42.4296s] Masking reference... [58.627s] Initializing temporary storage... [0.005087s] Building reference histograms... [12.6212s] Allocating buffers... [0.000191s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.98809s] Building query seed array... [2.1473s] Computing hash join... [4.31857s] Building seed filter... [0.083052s] Searching alignments... [129.737s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2855s] Building query seed array... [2.44083s] Computing hash join... [4.34226s] Building seed filter... [0.081607s] Searching alignments... [87.7002s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.4917s] Building query seed array... [2.54928s] Computing hash join... [4.38426s] Building seed filter... [0.082347s] Searching alignments... [84.1048s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.63591s] Building query seed array... [2.00314s] Computing hash join... [4.33391s] Building seed filter... [0.088769s] Searching alignments... [74.5617s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.68782s] Building query seed array... [1.83405s] Computing hash join... [4.18697s] Building seed filter... [0.079964s] Searching alignments... [98.9884s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1866s] Building query seed array... [2.28089s] Computing hash join... [4.23107s] Building seed filter... [0.086082s] Searching alignments... [58.522s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.355s] Building query seed array... [2.33349s] Computing hash join... [4.21937s] Building seed filter... [0.080984s] Searching alignments... [63.3362s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.05261s] Building query seed array... [1.93414s] Computing hash join... [4.17181s] Building seed filter... [0.084985s] Searching alignments... [52.2233s] Deallocating buffers... [0.106389s] Opening temporary output file... [0.000919s] Computing alignments... [253.778s] Deallocating reference... [0.090948s] Loading reference sequences... [385.962s] Masking reference... [57.8144s] Initializing temporary storage... [0.004579s] Building reference histograms... [12.5681s] Allocating buffers... [0.0002s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.95807s] Building query seed array... [2.06388s] Computing hash join... [4.43027s] Building seed filter... [0.077855s] Searching alignments... [154.863s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2615s] Building query seed array... [2.53697s] Computing hash join... [4.49215s] Building seed filter... [0.079847s] Searching alignments... [110.793s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.7592s] Building query seed array... [2.53915s] Computing hash join... [4.37585s] Building seed filter... [0.084426s] Searching alignments... [96.0482s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.64603s] Building query seed array... [1.99957s] Computing hash join... [4.39377s] Building seed filter... [0.08055s] Searching alignments... [84.1536s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.83771s] Building query seed array... [1.93698s] Computing hash join... [4.18838s] Building seed filter... [0.074987s] Searching alignments... [98.2486s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.6863s] Building query seed array... [2.28153s] Computing hash join... [4.30031s] Building seed filter... [0.078361s] Searching alignments... [69.5884s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.5363s] Building query seed array... [2.32384s] Computing hash join... [4.2705s] Building seed filter... [0.089745s] Searching alignments... [72.9125s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.55872s] Building query seed array... [1.92668s] Computing hash join... [4.20443s] Building seed filter... [0.082014s] Searching alignments... [60.0677s] Deallocating buffers... [0.113433s] Opening temporary output file... [0.000949s] Computing alignments... [318.31s] Deallocating reference... [0.088598s] Loading reference sequences... [48.1339s] Masking reference... [58.5954s] Initializing temporary storage... [0.003955s] Building reference histograms... [12.6586s] Allocating buffers... [0.000658s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.97143s] Building query seed array... [2.03389s] Computing hash join... [4.37038s] Building seed filter... [0.096143s] Searching alignments... [120.376s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2867s] Building query seed array... [2.53091s] Computing hash join... [4.3767s] Building seed filter... [0.078991s] Searching alignments... [87.5014s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5367s] Building query seed array... [2.57241s] Computing hash join... [4.33007s] Building seed filter... [0.085672s] Searching alignments... [72.0646s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.71783s] Building query seed array... [2.02921s] Computing hash join... [4.33178s] Building seed filter... [0.07984s] Searching alignments... [76.0057s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.67419s] Building query seed array... [1.83185s] Computing hash join... [4.25892s] Building seed filter... [0.073636s] Searching alignments... [88.8337s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.2884s] Building query seed array... [2.33991s] Computing hash join... [4.289s] Building seed filter... [0.073941s] Searching alignments... [57.1174s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3957s] Building query seed array... [2.32195s] Computing hash join... [4.20719s] Building seed filter... [0.076727s] Searching alignments... [58.5324s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.55824s] Building query seed array... [1.85969s] Computing hash join... [4.22109s] Building seed filter... [0.082038s] Searching alignments... [45.2739s] Deallocating buffers... [0.112503s] Opening temporary output file... [0.001409s] Computing alignments... [239.939s] Deallocating reference... [0.07799s] Loading reference sequences... [39.789s] Masking reference... [59.5187s] Initializing temporary storage... [0.005414s] Building reference histograms... [12.9427s] Allocating buffers... [0.000191s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.28117s] Building query seed array... [2.1297s] Computing hash join... [4.33403s] Building seed filter... [0.086219s] Searching alignments... [112.408s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.1992s] Building query seed array... [2.45567s] Computing hash join... [4.33266s] Building seed filter... [0.087861s] Searching alignments... [77.7117s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4681s] Building query seed array... [2.46382s] Computing hash join... [4.37176s] Building seed filter... [0.077024s] Searching alignments... [74.2614s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.92594s] Building query seed array... [2.07746s] Computing hash join... [4.38085s] Building seed filter... [0.073549s] Searching alignments... [67.7229s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.5952s] Building query seed array... [1.93335s] Computing hash join... [4.19196s] Building seed filter... [0.078139s] Searching alignments... [81.157s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1435s] Building query seed array... [2.23154s] Computing hash join... [4.2367s] Building seed filter... [0.081376s] Searching alignments... [56.1703s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3459s] Building query seed array... [2.27439s] Computing hash join... [4.15791s] Building seed filter... [0.081709s] Searching alignments... [54.7166s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.68807s] Building query seed array... [1.82213s] Computing hash join... [4.21123s] Building seed filter... [0.073238s] Searching alignments... [44.786s] Deallocating buffers... [0.116599s] Opening temporary output file... [0.001554s] Computing alignments... [219.624s] Deallocating reference... [0.075987s] Loading reference sequences... [16.4506s] Masking reference... [21.7754s] Initializing temporary storage... [0.004589s] Building reference histograms... [4.77523s] Allocating buffers... [0.000186s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.32708s] Building query seed array... [2.03478s] Computing hash join... [2.048s] Building seed filter... [0.045538s] Searching alignments... [54.6957s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21809s] Building query seed array... [2.42651s] Computing hash join... [2.06824s] Building seed filter... [0.045674s] Searching alignments... [43.9499s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.31505s] Building query seed array... [2.46866s] Computing hash join... [2.0533s] Building seed filter... [0.044341s] Searching alignments... [34.0658s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25402s] Building query seed array... [2.0358s] Computing hash join... [2.10791s] Building seed filter... [0.043997s] Searching alignments... [30.5256s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.27965s] Building query seed array... [1.82125s] Computing hash join... [1.93234s] Building seed filter... [0.043738s] Searching alignments... [28.7357s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.18806s] Building query seed array... [2.19286s] Computing hash join... [1.96805s] Building seed filter... [0.043396s] Searching alignments... [25.3887s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27233s] Building query seed array... [2.25649s] Computing hash join... [1.97423s] Building seed filter... [0.045325s] Searching alignments... [26.4058s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22959s] Building query seed array... [1.8102s] Computing hash join... [1.90553s] Building seed filter... [0.044508s] Searching alignments... [22.9567s] Deallocating buffers... [0.045925s] Opening temporary output file... [0.018128s] Computing alignments... [108.468s] Deallocating reference... [0.028578s] Loading reference sequences... [0.045048s] Deallocating buffers... [0.020111s] Joining output blocks... [205.811s] Deallocating queries... [0.042782s] Loading query sequences... [3.3e-05s] Closing the input file... [5.8e-05s] Closing the output file... [0.444762s] Closing the database file... [5.9e-05s] Deallocating taxonomy... [1.9e-05s] Total time = 7175s Reported 1385268979 pairwise alignments, 1385306881 HSPs. 3144931 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.103619s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.1135s] Opening the output file... [0.000801s] Loading query sequences... [87.8637s] Masking queries... [50.859s] Building query seed set... [0.337869s] Algorithm: Double-indexed Building query histograms... [3.06694s] Allocating buffers... [0.000613s] Loading reference sequences... [46.0211s] Masking reference... [58.8549s] Initializing temporary storage... [0.003836s] Building reference histograms... [12.0532s] Allocating buffers... [0.000207s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.96475s] Building query seed array... [2.16341s] Computing hash join... [4.34525s] Building seed filter... [0.085803s] Searching alignments... [168.447s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2776s] Building query seed array... [2.40437s] Computing hash join... [4.41517s] Building seed filter... [0.083159s] Searching alignments... [112s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4649s] Building query seed array... [2.49939s] Computing hash join... [4.38302s] Building seed filter... [0.088601s] Searching alignments... [104.513s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.64132s] Building query seed array... [2.04937s] Computing hash join... [4.36937s] Building seed filter... [0.083367s] Searching alignments... [93.4839s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.67103s] Building query seed array... [1.87749s] Computing hash join... [4.23428s] Building seed filter... [0.081403s] Searching alignments... [87.2229s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1747s] Building query seed array... [2.18084s] Computing hash join... [4.25378s] Building seed filter... [0.080649s] Searching alignments... [78.6922s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3225s] Building query seed array... [2.27337s] Computing hash join... [4.24842s] Building seed filter... [0.081353s] Searching alignments... [79.6498s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.61028s] Building query seed array... [1.81531s] Computing hash join... [4.1997s] Building seed filter... [0.087862s] Searching alignments... [67.1926s] Deallocating buffers... [0.120472s] Opening temporary output file... [0.00108s] Computing alignments... [338.732s] Deallocating reference... [0.097263s] Loading reference sequences... [52.8836s] Masking reference... [58.7451s] Initializing temporary storage... [0.004066s] Building reference histograms... [12.9576s] Allocating buffers... [0.000192s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.93951s] Building query seed array... [2.03556s] Computing hash join... [4.36777s] Building seed filter... [0.088358s] Searching alignments... [127.725s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3117s] Building query seed array... [2.50933s] Computing hash join... [4.44514s] Building seed filter... [0.08803s] Searching alignments... [86.5195s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5257s] Building query seed array... [2.58223s] Computing hash join... [4.41753s] Building seed filter... [0.088344s] Searching alignments... [82.3051s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.67195s] Building query seed array... [2.03118s] Computing hash join... [4.4167s] Building seed filter... [0.088204s] Searching alignments... [73.6656s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.68396s] Building query seed array... [1.82895s] Computing hash join... [4.24338s] Building seed filter... [0.078825s] Searching alignments... [98.5676s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2809s] Building query seed array... [2.27397s] Computing hash join... [4.25773s] Building seed filter... [0.080864s] Searching alignments... [57.4778s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3719s] Building query seed array... [2.32206s] Computing hash join... [4.20504s] Building seed filter... [0.082371s] Searching alignments... [62.2886s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.56001s] Building query seed array... [1.85938s] Computing hash join... [4.1596s] Building seed filter... [0.080745s] Searching alignments... [52.4609s] Deallocating buffers... [0.117406s] Opening temporary output file... [0.000683s] Computing alignments... [248.412s] Deallocating reference... [0.089125s] Loading reference sequences... [383.584s] Masking reference... [57.5414s] Initializing temporary storage... [0.003978s] Building reference histograms... [12.3175s] Allocating buffers... [0.000189s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.0256s] Building query seed array... [2.12642s] Computing hash join... [4.34454s] Building seed filter... [0.089424s] Searching alignments... [150.078s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3074s] Building query seed array... [2.49313s] Computing hash join... [4.38862s] Building seed filter... [0.081674s] Searching alignments... [101.148s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5375s] Building query seed array... [2.52545s] Computing hash join... [4.40837s] Building seed filter... [0.090679s] Searching alignments... [96.0692s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.62809s] Building query seed array... [2.01537s] Computing hash join... [4.36904s] Building seed filter... [0.084984s] Searching alignments... [84.2702s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.6351s] Building query seed array... [1.89658s] Computing hash join... [4.25088s] Building seed filter... [0.079395s] Searching alignments... [98.005s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.5818s] Building query seed array... [2.27988s] Computing hash join... [4.33988s] Building seed filter... [0.081987s] Searching alignments... [68.8654s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.7373s] Building query seed array... [2.35329s] Computing hash join... [4.30303s] Building seed filter... [0.084665s] Searching alignments... [71.7073s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.56654s] Building query seed array... [1.81541s] Computing hash join... [4.24351s] Building seed filter... [0.096301s] Searching alignments... [59.4926s] Deallocating buffers... [0.106972s] Opening temporary output file... [0.000966s] Computing alignments... [311.497s] Deallocating reference... [0.087076s] Loading reference sequences... [39.4674s] Masking reference... [57.6404s] Initializing temporary storage... [0.004101s] Building reference histograms... [13.1589s] Allocating buffers... [0.000184s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.92835s] Building query seed array... [2.03248s] Computing hash join... [4.39593s] Building seed filter... [0.097873s] Searching alignments... [119.647s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2568s] Building query seed array... [2.49436s] Computing hash join... [4.49104s] Building seed filter... [0.091864s] Searching alignments... [85.6065s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5575s] Building query seed array... [2.56151s] Computing hash join... [4.37663s] Building seed filter... [0.092307s] Searching alignments... [71.5555s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.12287s] Building query seed array... [2.392s] Computing hash join... [4.34807s] Building seed filter... [0.082821s] Searching alignments... [76.0994s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.67161s] Building query seed array... [1.82893s] Computing hash join... [4.3513s] Building seed filter... [0.081419s] Searching alignments... [86.2381s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1988s] Building query seed array... [2.27015s] Computing hash join... [4.32127s] Building seed filter... [0.087933s] Searching alignments... [55.4562s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.617s] Building query seed array... [2.31058s] Computing hash join... [4.23277s] Building seed filter... [0.089671s] Searching alignments... [63.6287s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.59907s] Building query seed array... [1.85743s] Computing hash join... [4.26738s] Building seed filter... [0.087777s] Searching alignments... [44.4664s] Deallocating buffers... [0.111816s] Opening temporary output file... [0.006791s] Computing alignments... [238.948s] Deallocating reference... [0.076073s] Loading reference sequences... [41.9205s] Masking reference... [57.526s] Initializing temporary storage... [0.005267s] Building reference histograms... [12.268s] Allocating buffers... [0.000201s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.33073s] Building query seed array... [2.13893s] Computing hash join... [4.38289s] Building seed filter... [0.094019s] Searching alignments... [111.55s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2105s] Building query seed array... [2.45829s] Computing hash join... [4.43262s] Building seed filter... [0.088547s] Searching alignments... [76.4981s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.82s] Building query seed array... [2.54979s] Computing hash join... [4.49363s] Building seed filter... [0.095521s] Searching alignments... [73.0471s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.60853s] Building query seed array... [2.01295s] Computing hash join... [4.39295s] Building seed filter... [0.095342s] Searching alignments... [66.5874s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.59031s] Building query seed array... [1.82742s] Computing hash join... [4.24419s] Building seed filter... [0.08674s] Searching alignments... [79.3323s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.3825s] Building query seed array... [2.3481s] Computing hash join... [4.27279s] Building seed filter... [0.085609s] Searching alignments... [55.8021s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3141s] Building query seed array... [2.24818s] Computing hash join... [4.25488s] Building seed filter... [0.081148s] Searching alignments... [54.2879s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.66287s] Building query seed array... [1.84118s] Computing hash join... [4.24699s] Building seed filter... [0.082461s] Searching alignments... [44.3268s] Deallocating buffers... [0.107031s] Opening temporary output file... [0.012427s] Computing alignments... [216.286s] Deallocating reference... [0.080316s] Loading reference sequences... [17.0511s] Masking reference... [21.7666s] Initializing temporary storage... [0.004033s] Building reference histograms... [4.88729s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.32052s] Building query seed array... [2.08561s] Computing hash join... [2.10265s] Building seed filter... [0.052263s] Searching alignments... [53.9956s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.26222s] Building query seed array... [2.74694s] Computing hash join... [2.13436s] Building seed filter... [0.054435s] Searching alignments... [36.8699s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.3587s] Building query seed array... [2.4955s] Computing hash join... [2.12168s] Building seed filter... [0.048073s] Searching alignments... [34.1834s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.36575s] Building query seed array... [2.02719s] Computing hash join... [2.05285s] Building seed filter... [0.054904s] Searching alignments... [29.9929s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25476s] Building query seed array... [1.83161s] Computing hash join... [1.98689s] Building seed filter... [0.046161s] Searching alignments... [28.7137s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.22049s] Building query seed array... [2.18501s] Computing hash join... [1.98073s] Building seed filter... [0.047885s] Searching alignments... [25.2737s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.30371s] Building query seed array... [2.26966s] Computing hash join... [1.94798s] Building seed filter... [0.050338s] Searching alignments... [26.4288s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23172s] Building query seed array... [1.90476s] Computing hash join... [1.94169s] Building seed filter... [0.053128s] Searching alignments... [22.1751s] Deallocating buffers... [0.043393s] Opening temporary output file... [0.014263s] Computing alignments... [107.409s] Deallocating reference... [0.029363s] Loading reference sequences... [0.039028s] Deallocating buffers... [0.018282s] Joining output blocks... [192.782s] Deallocating queries... [0.040166s] Loading query sequences... [3.5e-05s] Closing the input file... [5.8e-05s] Closing the output file... [0.407107s] Closing the database file... [3.5e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 7074.72s Reported 1360377858 pairwise alignments, 1360421265 HSPs. 3132082 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.073102s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.073723s] Opening the output file... [0.000337s] Loading query sequences... [80.6534s] Masking queries... [52.257s] Building query seed set... [0.344652s] Algorithm: Double-indexed Building query histograms... [2.58406s] Allocating buffers... [0.000701s] Loading reference sequences... [48.4175s] Masking reference... [59.043s] Initializing temporary storage... [0.004482s] Building reference histograms... [12.0044s] Allocating buffers... [0.000209s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.91487s] Building query seed array... [1.70109s] Computing hash join... [4.01643s] Building seed filter... [0.062484s] Searching alignments... [166.242s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3509s] Building query seed array... [1.93701s] Computing hash join... [4.13389s] Building seed filter... [0.061148s] Searching alignments... [189.761s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.58s] Building query seed array... [2.07749s] Computing hash join... [3.98848s] Building seed filter... [0.050344s] Searching alignments... [89.2315s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.65264s] Building query seed array... [1.69911s] Computing hash join... [4.03328s] Building seed filter... [0.059194s] Searching alignments... [107.101s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.82347s] Building query seed array... [1.47073s] Computing hash join... [3.83547s] Building seed filter... [0.05106s] Searching alignments... [112.24s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1267s] Building query seed array... [1.77212s] Computing hash join... [3.97518s] Building seed filter... [0.05017s] Searching alignments... [80.206s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.396s] Building query seed array... [1.84019s] Computing hash join... [3.9081s] Building seed filter... [0.053876s] Searching alignments... [77.4258s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.5619s] Building query seed array... [1.4627s] Computing hash join... [3.86016s] Building seed filter... [0.055765s] Searching alignments... [74.6203s] Deallocating buffers... [0.123698s] Opening temporary output file... [0.000599s] Computing alignments... [235.364s] Deallocating reference... [0.078013s] Loading reference sequences... [398.978s] Masking reference... [57.7261s] Initializing temporary storage... [0.013551s] Building reference histograms... [12.4203s] Allocating buffers... [0.000187s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.9656s] Building query seed array... [1.74929s] Computing hash join... [3.983s] Building seed filter... [0.059893s] Searching alignments... [111.802s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.5084s] Building query seed array... [2.04963s] Computing hash join... [4.00638s] Building seed filter... [0.052429s] Searching alignments... [109.524s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.6751s] Building query seed array... [2.12372s] Computing hash join... [4.02146s] Building seed filter... [0.05977s] Searching alignments... [65.7815s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.73042s] Building query seed array... [1.70282s] Computing hash join... [4.0402s] Building seed filter... [0.056209s] Searching alignments... [72.6207s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.62878s] Building query seed array... [1.4768s] Computing hash join... [3.86222s] Building seed filter... [0.050165s] Searching alignments... [81.2573s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.1835s] Building query seed array... [1.82344s] Computing hash join... [3.88713s] Building seed filter... [0.055381s] Searching alignments... [47.4528s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.5767s] Building query seed array... [1.86062s] Computing hash join... [4.01954s] Building seed filter... [0.057024s] Searching alignments... [41.7087s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.61585s] Building query seed array... [1.46923s] Computing hash join... [3.83735s] Building seed filter... [0.054235s] Searching alignments... [49.2813s] Deallocating buffers... [0.116207s] Opening temporary output file... [0.000571s] Computing alignments... [156.674s] Deallocating reference... [0.072001s] Loading reference sequences... [395.524s] Masking reference... [57.6297s] Initializing temporary storage... [0.003954s] Building reference histograms... [11.9922s] Allocating buffers... [0.00021s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.91347s] Building query seed array... [1.66256s] Computing hash join... [4.05464s] Building seed filter... [0.058098s] Searching alignments... [135.91s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2541s] Building query seed array... [2.02929s] Computing hash join... [4.0384s] Building seed filter... [0.06312s] Searching alignments... [130.136s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5195s] Building query seed array... [2.09311s] Computing hash join... [4.00634s] Building seed filter... [0.055986s] Searching alignments... [72.1781s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.75899s] Building query seed array... [1.70079s] Computing hash join... [4.06153s] Building seed filter... [0.04959s] Searching alignments... [78.8597s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.62104s] Building query seed array... [1.49632s] Computing hash join... [3.91009s] Building seed filter... [0.049182s] Searching alignments... [93.9473s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.2654s] Building query seed array... [1.88013s] Computing hash join... [3.9088s] Building seed filter... [0.051647s] Searching alignments... [57.1518s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3933s] Building query seed array... [1.87009s] Computing hash join... [3.89084s] Building seed filter... [0.047671s] Searching alignments... [49.1026s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.58323s] Building query seed array... [1.56596s] Computing hash join... [3.89004s] Building seed filter... [0.05415s] Searching alignments... [54.2841s] Deallocating buffers... [0.114057s] Opening temporary output file... [0.000755s] Computing alignments... [199.605s] Deallocating reference... [0.089943s] Loading reference sequences... [362.987s] Masking reference... [57.7226s] Initializing temporary storage... [0.004087s] Building reference histograms... [12.9283s] Allocating buffers... [0.000212s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.35846s] Building query seed array... [1.7574s] Computing hash join... [3.99688s] Building seed filter... [0.059545s] Searching alignments... [98.7248s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3615s] Building query seed array... [1.98653s] Computing hash join... [4.06461s] Building seed filter... [0.055878s] Searching alignments... [78.1248s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.4536s] Building query seed array... [2.09978s] Computing hash join... [4.04576s] Building seed filter... [0.056764s] Searching alignments... [56.1014s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.63234s] Building query seed array... [1.69144s] Computing hash join... [4.03806s] Building seed filter... [0.055879s] Searching alignments... [60.3444s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.05276s] Building query seed array... [1.66151s] Computing hash join... [3.85199s] Building seed filter... [0.048752s] Searching alignments... [71.2971s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.549s] Building query seed array... [1.87117s] Computing hash join... [3.97366s] Building seed filter... [0.047464s] Searching alignments... [39.3207s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.5462s] Building query seed array... [1.87192s] Computing hash join... [4.0204s] Building seed filter... [0.0545s] Searching alignments... [37.3962s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.58237s] Building query seed array... [1.49653s] Computing hash join... [3.85037s] Building seed filter... [0.052001s] Searching alignments... [39.2047s] Deallocating buffers... [0.127744s] Opening temporary output file... [0.004027s] Computing alignments... [145.243s] Deallocating reference... [0.065031s] Loading reference sequences... [356.311s] Masking reference... [57.7567s] Initializing temporary storage... [0.00415s] Building reference histograms... [11.9113s] Allocating buffers... [0.000187s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.88971s] Building query seed array... [1.69697s] Computing hash join... [4.01532s] Building seed filter... [0.060507s] Searching alignments... [94.2487s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.7248s] Building query seed array... [2.03402s] Computing hash join... [4.01s] Building seed filter... [0.062917s] Searching alignments... [80.1111s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.6325s] Building query seed array... [2.06544s] Computing hash join... [4.12101s] Building seed filter... [0.056546s] Searching alignments... [53.9507s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.65869s] Building query seed array... [1.67622s] Computing hash join... [4.02588s] Building seed filter... [0.053869s] Searching alignments... [59.0642s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.64143s] Building query seed array... [1.48207s] Computing hash join... [3.89626s] Building seed filter... [0.050914s] Searching alignments... [72.7346s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1374s] Building query seed array... [1.78259s] Computing hash join... [3.93695s] Building seed filter... [0.051072s] Searching alignments... [37.7141s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3523s] Building query seed array... [1.81671s] Computing hash join... [3.93792s] Building seed filter... [0.049256s] Searching alignments... [33.602s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.57783s] Building query seed array... [1.49085s] Computing hash join... [3.87938s] Building seed filter... [0.049387s] Searching alignments... [36.8919s] Deallocating buffers... [0.113944s] Opening temporary output file... [0.000736s] Computing alignments... [136.725s] Deallocating reference... [0.061533s] Loading reference sequences... [155.757s] Masking reference... [21.4943s] Initializing temporary storage... [0.004048s] Building reference histograms... [4.8532s] Allocating buffers... [0.00019s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.43262s] Building query seed array... [1.67304s] Computing hash join... [1.83364s] Building seed filter... [0.032843s] Searching alignments... [51.1222s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.31942s] Building query seed array... [1.98735s] Computing hash join... [1.79833s] Building seed filter... [0.028811s] Searching alignments... [53.2374s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.41469s] Building query seed array... [1.9989s] Computing hash join... [1.85272s] Building seed filter... [0.031033s] Searching alignments... [28.2345s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.27737s] Building query seed array... [1.64607s] Computing hash join... [1.87293s] Building seed filter... [0.03079s] Searching alignments... [33.0782s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25581s] Building query seed array... [1.51637s] Computing hash join... [1.7318s] Building seed filter... [0.026709s] Searching alignments... [35.6244s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.22762s] Building query seed array... [1.73342s] Computing hash join... [1.73433s] Building seed filter... [0.039971s] Searching alignments... [21.8606s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.28137s] Building query seed array... [1.76997s] Computing hash join... [1.72363s] Building seed filter... [0.036913s] Searching alignments... [21.5802s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22911s] Building query seed array... [1.47566s] Computing hash join... [1.68601s] Building seed filter... [0.029685s] Searching alignments... [20.2639s] Deallocating buffers... [0.050986s] Opening temporary output file... [0.033933s] Computing alignments... [76.7754s] Deallocating reference... [0.028573s] Loading reference sequences... [0.045157s] Deallocating buffers... [0.014731s] Joining output blocks... [120.954s] Deallocating queries... [0.052173s] Loading query sequences... [3.8e-05s] Closing the input file... [6.4e-05s] Closing the output file... [0.33089s] Closing the database file... [3.7e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 7361.03s Reported 490870667 pairwise alignments, 490915717 HSPs. 2397677 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.080493s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.079906s] Opening the output file... [0.000275s] Loading query sequences... [79.9851s] Masking queries... [55.3397s] Building query seed set... [0.37423s] Algorithm: Double-indexed Building query histograms... [2.66493s] Allocating buffers... [0.000712s] Loading reference sequences... [47.112s] Masking reference... [59.5468s] Initializing temporary storage... [0.0043s] Building reference histograms... [12.0722s] Allocating buffers... [0.00021s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.8606s] Building query seed array... [1.68117s] Computing hash join... [4.15925s] Building seed filter... [0.061245s] Searching alignments... [163.885s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2963s] Building query seed array... [2.02417s] Computing hash join... [4.10054s] Building seed filter... [0.058403s] Searching alignments... [190.55s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4726s] Building query seed array... [1.97886s] Computing hash join... [4.08337s] Building seed filter... [0.05754s] Searching alignments... [88.041s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.65814s] Building query seed array... [1.69315s] Computing hash join... [4.0501s] Building seed filter... [0.059022s] Searching alignments... [106.05s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.65363s] Building query seed array... [1.51699s] Computing hash join... [3.93335s] Building seed filter... [0.053676s] Searching alignments... [111.562s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.1863s] Building query seed array... [1.90434s] Computing hash join... [3.97831s] Building seed filter... [0.050364s] Searching alignments... [80.5841s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.392s] Building query seed array... [1.80747s] Computing hash join... [3.99874s] Building seed filter... [0.056776s] Searching alignments... [75.8643s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.52642s] Building query seed array... [1.4868s] Computing hash join... [3.94187s] Building seed filter... [0.052614s] Searching alignments... [74.303s] Deallocating buffers... [0.122999s] Opening temporary output file... [0.00064s] Computing alignments... [233.093s] Deallocating reference... [0.08028s] Loading reference sequences... [404.822s] Masking reference... [57.7977s] Initializing temporary storage... [0.003856s] Building reference histograms... [12.7952s] Allocating buffers... [0.000199s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.98135s] Building query seed array... [1.66085s] Computing hash join... [4.03203s] Building seed filter... [0.064823s] Searching alignments... [114.199s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.5195s] Building query seed array... [2.11076s] Computing hash join... [4.02686s] Building seed filter... [0.056981s] Searching alignments... [109.733s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.537s] Building query seed array... [2.10128s] Computing hash join... [4.02173s] Building seed filter... [0.058412s] Searching alignments... [63.8821s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.8992s] Building query seed array... [1.72091s] Computing hash join... [4.0572s] Building seed filter... [0.056126s] Searching alignments... [73.1043s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.60841s] Building query seed array... [1.52185s] Computing hash join... [3.91149s] Building seed filter... [0.05093s] Searching alignments... [80.0804s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.182s] Building query seed array... [1.81892s] Computing hash join... [4.00055s] Building seed filter... [0.050655s] Searching alignments... [47.1915s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.3778s] Building query seed array... [1.84728s] Computing hash join... [3.97114s] Building seed filter... [0.0509s] Searching alignments... [41.3255s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.56228s] Building query seed array... [1.49397s] Computing hash join... [3.92188s] Building seed filter... [0.058037s] Searching alignments... [48.4279s] Deallocating buffers... [0.104172s] Opening temporary output file... [0.00063s] Computing alignments... [153.16s] Deallocating reference... [0.072696s] Loading reference sequences... [394.619s] Masking reference... [57.5641s] Initializing temporary storage... [0.004184s] Building reference histograms... [12.1781s] Allocating buffers... [0.000213s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.2673s] Building query seed array... [1.75304s] Computing hash join... [4.0647s] Building seed filter... [0.064953s] Searching alignments... [133.194s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.6583s] Building query seed array... [2.0824s] Computing hash join... [4.0435s] Building seed filter... [0.053615s] Searching alignments... [128.903s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.5548s] Building query seed array... [2.08105s] Computing hash join... [4.09724s] Building seed filter... [0.054599s] Searching alignments... [71.4552s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.7132s] Building query seed array... [1.74052s] Computing hash join... [4.11512s] Building seed filter... [0.059483s] Searching alignments... [79.2653s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.89124s] Building query seed array... [1.54964s] Computing hash join... [3.93969s] Building seed filter... [0.052375s] Searching alignments... [92.2943s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1895s] Building query seed array... [1.81588s] Computing hash join... [3.9707s] Building seed filter... [0.054232s] Searching alignments... [57.7461s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.3506s] Building query seed array... [1.89965s] Computing hash join... [3.933s] Building seed filter... [0.055243s] Searching alignments... [50.1216s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.82653s] Building query seed array... [1.54612s] Computing hash join... [3.94453s] Building seed filter... [0.054126s] Searching alignments... [54.4698s] Deallocating buffers... [0.113361s] Opening temporary output file... [0.000721s] Computing alignments... [199.72s] Deallocating reference... [0.08835s] Loading reference sequences... [365.878s] Masking reference... [57.9259s] Initializing temporary storage... [0.004868s] Building reference histograms... [12.8047s] Allocating buffers... [0.000196s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.1884s] Building query seed array... [1.74074s] Computing hash join... [4.10879s] Building seed filter... [0.061574s] Searching alignments... [97.4701s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3507s] Building query seed array... [2.01674s] Computing hash join... [4.05574s] Building seed filter... [0.05485s] Searching alignments... [79.0774s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5613s] Building query seed array... [2.07001s] Computing hash join... [4.12812s] Building seed filter... [0.05384s] Searching alignments... [56.3582s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.64941s] Building query seed array... [1.65061s] Computing hash join... [4.05934s] Building seed filter... [0.058345s] Searching alignments... [59.3137s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.7629s] Building query seed array... [1.55117s] Computing hash join... [3.91809s] Building seed filter... [0.056824s] Searching alignments... [70.0034s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1881s] Building query seed array... [1.81186s] Computing hash join... [3.98794s] Building seed filter... [0.051384s] Searching alignments... [38.3088s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.438s] Building query seed array... [1.82966s] Computing hash join... [3.98567s] Building seed filter... [0.054774s] Searching alignments... [37.3546s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.57869s] Building query seed array... [1.48066s] Computing hash join... [3.90663s] Building seed filter... [0.054663s] Searching alignments... [39.2138s] Deallocating buffers... [0.115446s] Opening temporary output file... [0.001107s] Computing alignments... [144.113s] Deallocating reference... [0.065579s] Loading reference sequences... [357.709s] Masking reference... [57.9532s] Initializing temporary storage... [0.004097s] Building reference histograms... [13.0438s] Allocating buffers... [0.000192s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.99186s] Building query seed array... [1.65983s] Computing hash join... [4.05874s] Building seed filter... [0.05891s] Searching alignments... [91.5095s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2982s] Building query seed array... [1.97834s] Computing hash join... [4.12842s] Building seed filter... [0.063306s] Searching alignments... [80.8066s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.5034s] Building query seed array... [2.05814s] Computing hash join... [4.04979s] Building seed filter... [0.057529s] Searching alignments... [52.6368s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.74117s] Building query seed array... [1.67546s] Computing hash join... [4.09568s] Building seed filter... [0.056998s] Searching alignments... [59.1048s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.62807s] Building query seed array... [1.49123s] Computing hash join... [3.90547s] Building seed filter... [0.056182s] Searching alignments... [71.8956s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.3377s] Building query seed array... [1.80878s] Computing hash join... [4.07629s] Building seed filter... [0.050902s] Searching alignments... [37.2465s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3578s] Building query seed array... [1.76664s] Computing hash join... [4.02281s] Building seed filter... [0.050691s] Searching alignments... [32.5746s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.54585s] Building query seed array... [1.45776s] Computing hash join... [3.87986s] Building seed filter... [0.055073s] Searching alignments... [36.5809s] Deallocating buffers... [0.112927s] Opening temporary output file... [0.000715s] Computing alignments... [135.484s] Deallocating reference... [0.065517s] Loading reference sequences... [157.286s] Masking reference... [21.545s] Initializing temporary storage... [0.004467s] Building reference histograms... [4.77814s] Allocating buffers... [0.000187s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.29406s] Building query seed array... [1.65784s] Computing hash join... [1.82591s] Building seed filter... [0.037136s] Searching alignments... [50.4785s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21529s] Building query seed array... [1.9763s] Computing hash join... [1.82971s] Building seed filter... [0.031019s] Searching alignments... [54.4147s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.32491s] Building query seed array... [1.98021s] Computing hash join... [1.85662s] Building seed filter... [0.034658s] Searching alignments... [28.7004s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.24061s] Building query seed array... [1.66762s] Computing hash join... [1.83989s] Building seed filter... [0.036675s] Searching alignments... [31.974s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.27375s] Building query seed array... [1.48886s] Computing hash join... [1.72431s] Building seed filter... [0.030551s] Searching alignments... [35.3082s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.19115s] Building query seed array... [1.913s] Computing hash join... [1.79569s] Building seed filter... [0.031992s] Searching alignments... [21.0569s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.37856s] Building query seed array... [1.75327s] Computing hash join... [1.77596s] Building seed filter... [0.031005s] Searching alignments... [22.0721s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.25136s] Building query seed array... [1.45449s] Computing hash join... [1.73498s] Building seed filter... [0.032277s] Searching alignments... [19.8393s] Deallocating buffers... [0.045498s] Opening temporary output file... [0.024723s] Computing alignments... [77.5007s] Deallocating reference... [0.028575s] Loading reference sequences... [0.015652s] Deallocating buffers... [0.011373s] Joining output blocks... [117.43s] Deallocating queries... [0.048264s] Loading query sequences... [3.5e-05s] Closing the input file... [5.6e-05s] Closing the output file... [0.392538s] Closing the database file... [5.3e-05s] Deallocating taxonomy... [1.4e-05s] Total time = 7343.87s Reported 485601595 pairwise alignments, 485640021 HSPs. 2389527 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.057771s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.092552s] Opening the output file... [0.000405s] Loading query sequences... [74.6585s] Masking queries... [53.3171s] Building query seed set... [0.32442s] Algorithm: Double-indexed Building query histograms... [2.13968s] Allocating buffers... [0.000685s] Loading reference sequences... [428.943s] Masking reference... [59.0708s] Initializing temporary storage... [0.003977s] Building reference histograms... [12.2566s] Allocating buffers... [0.000198s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.87727s] Building query seed array... [1.45098s] Computing hash join... [3.82582s] Building seed filter... [0.05334s] Searching alignments... [61.4189s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2482s] Building query seed array... [1.62882s] Computing hash join... [3.77681s] Building seed filter... [0.048114s] Searching alignments... [48.1188s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4281s] Building query seed array... [1.63196s] Computing hash join... [3.75947s] Building seed filter... [0.050086s] Searching alignments... [38.5173s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.63019s] Building query seed array... [1.43742s] Computing hash join... [3.76452s] Building seed filter... [0.043717s] Searching alignments... [38.484s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.64756s] Building query seed array... [1.29301s] Computing hash join... [3.82011s] Building seed filter... [0.039503s] Searching alignments... [27.9459s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.2089s] Building query seed array... [1.39715s] Computing hash join... [3.71037s] Building seed filter... [0.043801s] Searching alignments... [25.2552s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3761s] Building query seed array... [1.42193s] Computing hash join... [3.65386s] Building seed filter... [0.044887s] Searching alignments... [26.1205s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.81079s] Building query seed array... [1.27398s] Computing hash join... [3.68349s] Building seed filter... [0.047173s] Searching alignments... [24.9996s] Deallocating buffers... [0.108221s] Opening temporary output file... [0.001076s] Computing alignments... [122.52s] Deallocating reference... [0.077318s] Loading reference sequences... [397.492s] Masking reference... [57.7946s] Initializing temporary storage... [0.004552s] Building reference histograms... [13.218s] Allocating buffers... [0.000208s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.02318s] Building query seed array... [1.51395s] Computing hash join... [3.79473s] Building seed filter... [0.057187s] Searching alignments... [53.6418s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.275s] Building query seed array... [1.90799s] Computing hash join... [3.74641s] Building seed filter... [0.050912s] Searching alignments... [42.0038s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.6797s] Building query seed array... [1.64476s] Computing hash join... [3.81555s] Building seed filter... [0.052716s] Searching alignments... [35.5936s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.68853s] Building query seed array... [1.41868s] Computing hash join... [3.77932s] Building seed filter... [0.049923s] Searching alignments... [33.5583s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.64569s] Building query seed array... [1.27244s] Computing hash join... [3.69798s] Building seed filter... [0.046933s] Searching alignments... [25.282s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2638s] Building query seed array... [1.47427s] Computing hash join... [3.6903s] Building seed filter... [0.043533s] Searching alignments... [25.878s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.4688s] Building query seed array... [1.52136s] Computing hash join... [3.64333s] Building seed filter... [0.046585s] Searching alignments... [23.6952s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.68426s] Building query seed array... [1.30757s] Computing hash join... [3.65977s] Building seed filter... [0.048401s] Searching alignments... [22.293s] Deallocating buffers... [0.085154s] Opening temporary output file... [0.001497s] Computing alignments... [107.692s] Deallocating reference... [0.087195s] Loading reference sequences... [397.57s] Masking reference... [57.6419s] Initializing temporary storage... [0.004821s] Building reference histograms... [12.1262s] Allocating buffers... [0.000209s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.09914s] Building query seed array... [1.56186s] Computing hash join... [3.7878s] Building seed filter... [0.052865s] Searching alignments... [58.9385s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2962s] Building query seed array... [1.6275s] Computing hash join... [3.93254s] Building seed filter... [0.049459s] Searching alignments... [47.8281s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.4351s] Building query seed array... [1.68628s] Computing hash join... [3.72937s] Building seed filter... [0.047806s] Searching alignments... [37.2405s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.67676s] Building query seed array... [1.43386s] Computing hash join... [3.75726s] Building seed filter... [0.049987s] Searching alignments... [37.2351s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.65999s] Building query seed array... [1.38456s] Computing hash join... [3.71893s] Building seed filter... [0.045052s] Searching alignments... [26.2346s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.4824s] Building query seed array... [1.47495s] Computing hash join... [3.69023s] Building seed filter... [0.046833s] Searching alignments... [25.8408s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.4266s] Building query seed array... [1.46987s] Computing hash join... [3.67461s] Building seed filter... [0.042262s] Searching alignments... [25.9408s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.56591s] Building query seed array... [1.23272s] Computing hash join... [3.73536s] Building seed filter... [0.04519s] Searching alignments... [23.3853s] Deallocating buffers... [0.117114s] Opening temporary output file... [0.001892s] Computing alignments... [119.785s] Deallocating reference... [0.086973s] Loading reference sequences... [362.906s] Masking reference... [57.9399s] Initializing temporary storage... [0.004299s] Building reference histograms... [12.5875s] Allocating buffers... [0.000194s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.99463s] Building query seed array... [1.48514s] Computing hash join... [3.79206s] Building seed filter... [0.047522s] Searching alignments... [55.408s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.369s] Building query seed array... [1.64466s] Computing hash join... [3.7586s] Building seed filter... [0.051879s] Searching alignments... [46.701s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.5646s] Building query seed array... [1.66575s] Computing hash join... [3.71819s] Building seed filter... [0.046288s] Searching alignments... [37.3956s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.6503s] Building query seed array... [1.43692s] Computing hash join... [3.83717s] Building seed filter... [0.051331s] Searching alignments... [37.7058s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.6545s] Building query seed array... [1.3032s] Computing hash join... [3.80478s] Building seed filter... [0.042385s] Searching alignments... [26.9838s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.7527s] Building query seed array... [1.49343s] Computing hash join... [3.72118s] Building seed filter... [0.043512s] Searching alignments... [25.2011s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.3738s] Building query seed array... [1.47849s] Computing hash join... [3.64228s] Building seed filter... [0.044388s] Searching alignments... [26.039s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.61593s] Building query seed array... [1.22828s] Computing hash join... [3.63349s] Building seed filter... [0.045545s] Searching alignments... [23.4312s] Deallocating buffers... [0.105793s] Opening temporary output file... [0.000915s] Computing alignments... [116.694s] Deallocating reference... [0.065584s] Loading reference sequences... [364.742s] Masking reference... [58.4172s] Initializing temporary storage... [0.005246s] Building reference histograms... [13.7489s] Allocating buffers... [0.000192s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.06822s] Building query seed array... [1.43475s] Computing hash join... [3.80997s] Building seed filter... [0.051356s] Searching alignments... [54.2314s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2457s] Building query seed array... [1.59735s] Computing hash join... [3.80779s] Building seed filter... [0.052858s] Searching alignments... [41.0344s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4492s] Building query seed array... [1.55655s] Computing hash join... [3.74021s] Building seed filter... [0.052623s] Searching alignments... [35.9963s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.644s] Building query seed array... [1.38326s] Computing hash join... [3.78239s] Building seed filter... [0.051403s] Searching alignments... [34.3431s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.80836s] Building query seed array... [1.35732s] Computing hash join... [3.73716s] Building seed filter... [0.043601s] Searching alignments... [25.6218s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.2417s] Building query seed array... [1.38043s] Computing hash join... [3.64227s] Building seed filter... [0.050801s] Searching alignments... [23.1174s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.2894s] Building query seed array... [1.41224s] Computing hash join... [3.72586s] Building seed filter... [0.045132s] Searching alignments... [24.9284s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.92732s] Building query seed array... [1.31561s] Computing hash join... [3.66569s] Building seed filter... [0.049314s] Searching alignments... [22.6344s] Deallocating buffers... [0.109935s] Opening temporary output file... [0.001059s] Computing alignments... [114.076s] Deallocating reference... [0.081035s] Loading reference sequences... [156.705s] Masking reference... [21.4807s] Initializing temporary storage... [0.005052s] Building reference histograms... [4.80889s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.24646s] Building query seed array... [1.50445s] Computing hash join... [1.65447s] Building seed filter... [0.032584s] Searching alignments... [22.4861s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21504s] Building query seed array... [1.60888s] Computing hash join... [1.60995s] Building seed filter... [0.02903s] Searching alignments... [19.4728s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.3087s] Building query seed array... [1.62629s] Computing hash join... [1.64737s] Building seed filter... [0.029665s] Searching alignments... [15.6985s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.27519s] Building query seed array... [1.38495s] Computing hash join... [1.62622s] Building seed filter... [0.031718s] Searching alignments... [15.5214s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.29779s] Building query seed array... [1.5977s] Computing hash join... [1.58755s] Building seed filter... [0.025181s] Searching alignments... [10.8391s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.16311s] Building query seed array... [1.44476s] Computing hash join... [1.5696s] Building seed filter... [0.028115s] Searching alignments... [10.7588s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.25331s] Building query seed array... [1.38898s] Computing hash join... [1.5327s] Building seed filter... [0.026603s] Searching alignments... [10.5383s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.30377s] Building query seed array... [1.22428s] Computing hash join... [1.50784s] Building seed filter... [0.029441s] Searching alignments... [9.95554s] Deallocating buffers... [0.042203s] Opening temporary output file... [0.022355s] Computing alignments... [63.6921s] Deallocating reference... [0.028689s] Loading reference sequences... [0.041325s] Deallocating buffers... [0.009357s] Joining output blocks... [52.6119s] Deallocating queries... [0.047168s] Loading query sequences... [3.8e-05s] Closing the input file... [6.9e-05s] Closing the output file... [0.630681s] Closing the database file... [3.2e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 5479.23s Reported 169349945 pairwise alignments, 169368963 HSPs. 1973261 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.063384s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.057809s] Opening the output file... [0.000734s] Loading query sequences... [74.6302s] Masking queries... [73.8518s] Building query seed set... [0.314554s] Algorithm: Double-indexed Building query histograms... [1.72226s] Allocating buffers... [0.00069s] Loading reference sequences... [48.7562s] Masking reference... [59.4872s] Initializing temporary storage... [0.00513s] Building reference histograms... [13.1643s] Allocating buffers... [0.00021s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.94238s] Building query seed array... [1.08833s] Computing hash join... [3.78588s] Building seed filter... [0.057941s] Searching alignments... [59.5013s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3096s] Building query seed array... [1.18717s] Computing hash join... [3.82111s] Building seed filter... [0.053688s] Searching alignments... [48.4193s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.4335s] Building query seed array... [1.22339s] Computing hash join... [3.81028s] Building seed filter... [0.050061s] Searching alignments... [38.1683s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.63963s] Building query seed array... [1.11485s] Computing hash join... [3.81747s] Building seed filter... [0.051192s] Searching alignments... [37.3429s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.63139s] Building query seed array... [0.963644s] Computing hash join... [3.6718s] Building seed filter... [0.045355s] Searching alignments... [27.2738s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.201s] Building query seed array... [1.03848s] Computing hash join... [3.63699s] Building seed filter... [0.050562s] Searching alignments... [25.094s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.3454s] Building query seed array... [1.07704s] Computing hash join... [3.62706s] Building seed filter... [0.048831s] Searching alignments... [25.5383s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.60462s] Building query seed array... [0.930269s] Computing hash join... [3.6447s] Building seed filter... [0.050805s] Searching alignments... [23.9208s] Deallocating buffers... [0.108778s] Opening temporary output file... [0.000957s] Computing alignments... [121.605s] Deallocating reference... [0.097325s] Loading reference sequences... [379.122s] Masking reference... [58.1919s] Initializing temporary storage... [0.004547s] Building reference histograms... [12.1406s] Allocating buffers... [0.000191s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.96085s] Building query seed array... [1.07904s] Computing hash join... [3.74249s] Building seed filter... [0.056499s] Searching alignments... [52.2744s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2544s] Building query seed array... [1.23921s] Computing hash join... [3.73576s] Building seed filter... [0.055534s] Searching alignments... [42.0545s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.5317s] Building query seed array... [1.27529s] Computing hash join... [3.8252s] Building seed filter... [0.055576s] Searching alignments... [34.7793s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.71805s] Building query seed array... [1.04111s] Computing hash join... [3.78233s] Building seed filter... [0.054172s] Searching alignments... [32.5826s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.60012s] Building query seed array... [0.958543s] Computing hash join... [3.6539s] Building seed filter... [0.050459s] Searching alignments... [24.8099s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.2042s] Building query seed array... [1.04056s] Computing hash join... [3.65145s] Building seed filter... [0.05113s] Searching alignments... [22.4158s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.5004s] Building query seed array... [1.15657s] Computing hash join... [3.6192s] Building seed filter... [0.047673s] Searching alignments... [23.3073s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.57818s] Building query seed array... [0.980038s] Computing hash join... [3.69609s] Building seed filter... [0.044405s] Searching alignments... [22.4864s] Deallocating buffers... [0.112373s] Opening temporary output file... [0.001124s] Computing alignments... [105.417s] Deallocating reference... [0.071532s] Loading reference sequences... [391.743s] Masking reference... [58.503s] Initializing temporary storage... [0.004576s] Building reference histograms... [12.9887s] Allocating buffers... [0.000188s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.07887s] Building query seed array... [1.13961s] Computing hash join... [3.77724s] Building seed filter... [0.053489s] Searching alignments... [59.2111s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3256s] Building query seed array... [1.25611s] Computing hash join... [3.81637s] Building seed filter... [0.053164s] Searching alignments... [45.2053s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [11.6057s] Building query seed array... [1.29126s] Computing hash join... [3.72888s] Building seed filter... [0.048744s] Searching alignments... [36.0896s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.64182s] Building query seed array... [1.07347s] Computing hash join... [3.75729s] Building seed filter... [0.048315s] Searching alignments... [36.0676s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [8.87705s] Building query seed array... [1.02805s] Computing hash join... [3.69206s] Building seed filter... [0.044917s] Searching alignments... [26.4955s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.1976s] Building query seed array... [1.11111s] Computing hash join... [3.64783s] Building seed filter... [0.051224s] Searching alignments... [26.888s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.357s] Building query seed array... [1.16234s] Computing hash join... [3.73444s] Building seed filter... [0.051256s] Searching alignments... [25.3666s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.55689s] Building query seed array... [0.930983s] Computing hash join... [3.64891s] Building seed filter... [0.050869s] Searching alignments... [23.3105s] Deallocating buffers... [0.108912s] Opening temporary output file... [0.000948s] Computing alignments... [120.267s] Deallocating reference... [0.069722s] Loading reference sequences... [377.048s] Masking reference... [58.0491s] Initializing temporary storage... [0.003948s] Building reference histograms... [12.6713s] Allocating buffers... [0.000189s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.01599s] Building query seed array... [1.07468s] Computing hash join... [3.83517s] Building seed filter... [0.05785s] Searching alignments... [54.7808s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3089s] Building query seed array... [1.33609s] Computing hash join... [3.77161s] Building seed filter... [0.052484s] Searching alignments... [46.9027s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.6836s] Building query seed array... [1.30016s] Computing hash join... [3.83007s] Building seed filter... [0.054594s] Searching alignments... [36.0736s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.67042s] Building query seed array... [1.06743s] Computing hash join... [3.73805s] Building seed filter... [0.05062s] Searching alignments... [37.067s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.67042s] Building query seed array... [0.967828s] Computing hash join... [3.66082s] Building seed filter... [0.048022s] Searching alignments... [26.0377s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.1865s] Building query seed array... [1.26078s] Computing hash join... [3.68377s] Building seed filter... [0.054779s] Searching alignments... [25.3782s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.4438s] Building query seed array... [1.12381s] Computing hash join... [3.654s] Building seed filter... [0.046376s] Searching alignments... [25.6156s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.62984s] Building query seed array... [0.959778s] Computing hash join... [3.673s] Building seed filter... [0.052509s] Searching alignments... [23.7422s] Deallocating buffers... [0.106622s] Opening temporary output file... [0.000932s] Computing alignments... [113.266s] Deallocating reference... [0.065279s] Loading reference sequences... [358.613s] Masking reference... [58.2252s] Initializing temporary storage... [0.005392s] Building reference histograms... [12.3787s] Allocating buffers... [0.000199s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.97785s] Building query seed array... [1.07426s] Computing hash join... [3.76374s] Building seed filter... [0.056864s] Searching alignments... [52.7488s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2512s] Building query seed array... [1.20198s] Computing hash join... [3.78099s] Building seed filter... [0.056467s] Searching alignments... [41.0897s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.4678s] Building query seed array... [1.18583s] Computing hash join... [3.83725s] Building seed filter... [0.065127s] Searching alignments... [35.1276s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.67524s] Building query seed array... [1.07571s] Computing hash join... [3.83153s] Building seed filter... [0.062699s] Searching alignments... [33.1331s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.60203s] Building query seed array... [0.953625s] Computing hash join... [3.6146s] Building seed filter... [0.048471s] Searching alignments... [24.8947s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.1865s] Building query seed array... [1.04526s] Computing hash join... [3.70508s] Building seed filter... [0.053127s] Searching alignments... [22.9639s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.3533s] Building query seed array... [1.0795s] Computing hash join... [3.67599s] Building seed filter... [0.053098s] Searching alignments... [24.6494s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.56371s] Building query seed array... [0.995891s] Computing hash join... [3.63307s] Building seed filter... [0.05594s] Searching alignments... [22.2299s] Deallocating buffers... [0.110491s] Opening temporary output file... [0.001037s] Computing alignments... [111.748s] Deallocating reference... [0.06647s] Loading reference sequences... [160.378s] Masking reference... [21.6071s] Initializing temporary storage... [0.005257s] Building reference histograms... [4.68484s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.25611s] Building query seed array... [1.08504s] Computing hash join... [1.56708s] Building seed filter... [0.037125s] Searching alignments... [22.7044s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23488s] Building query seed array... [1.17072s] Computing hash join... [1.56536s] Building seed filter... [0.032375s] Searching alignments... [19.1204s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.29481s] Building query seed array... [1.20708s] Computing hash join... [1.57261s] Building seed filter... [0.031259s] Searching alignments... [15.0899s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.31378s] Building query seed array... [1.05094s] Computing hash join... [1.57114s] Building seed filter... [0.031122s] Searching alignments... [14.7927s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26041s] Building query seed array... [0.934677s] Computing hash join... [1.50523s] Building seed filter... [0.027713s] Searching alignments... [10.821s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.18624s] Building query seed array... [1.05478s] Computing hash join... [1.485s] Building seed filter... [0.027744s] Searching alignments... [10.9744s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.25118s] Building query seed array... [1.09885s] Computing hash join... [1.5347s] Building seed filter... [0.027029s] Searching alignments... [10.4408s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23313s] Building query seed array... [0.931984s] Computing hash join... [1.51423s] Building seed filter... [0.027954s] Searching alignments... [9.74617s] Deallocating buffers... [0.042296s] Opening temporary output file... [0.03288s] Computing alignments... [62.8369s] Deallocating reference... [0.029599s] Loading reference sequences... [0.083211s] Deallocating buffers... [0.006274s] Joining output blocks... [54.1974s] Deallocating queries... [0.041953s] Loading query sequences... [3.5e-05s] Closing the input file... [5.9e-05s] Closing the output file... [0.665705s] Closing the database file... [3.2e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 5053s Reported 177294276 pairwise alignments, 177318251 HSPs. 1996536 queries aligned.