[18 Apr 19 11:20:11] anvio ..............................: 5.4 [18 Apr 19 11:20:11] profiler_version ...................: 31 [18 Apr 19 11:20:11] sample_id ..........................: MG6 [18 Apr 19 11:20:11] description ........................: None [18 Apr 19 11:20:11] profile_db .........................: /gscratch/scrubbed/samwhite/outputs/20190401_metagenomics_pgen_anvio/MG6.bam-ANVIO_PROFILE/PROFILE.db [18 Apr 19 11:20:11] contigs_db .........................: True [18 Apr 19 11:20:11] contigs_db_hash ....................: hash8fc73e85 [18 Apr 19 11:20:11] cmd_line ...........................: /usr/lusers/samwhite/.conda/envs/anvio54/bin/anvi-profile -i MG6.bam -c contigs.db --sample-name MG6 --num-threads 28 [18 Apr 19 11:20:11] merged .............................: False [18 Apr 19 11:20:11] blank ..............................: False [18 Apr 19 11:20:11] split_length .......................: 20,000 [18 Apr 19 11:20:11] min_contig_length ..................: 1,000 [18 Apr 19 11:20:11] max_contig_length ..................: 9,223,372,036,854,775,807 [18 Apr 19 11:20:11] min_mean_coverage ..................: 0 [18 Apr 19 11:20:11] clustering_performed ...............: False [18 Apr 19 11:20:11] min_coverage_for_variability .......: 10 [18 Apr 19 11:20:11] skip_SNV_profiling .................: False [18 Apr 19 11:20:11] profile_SCVs .......................: False [18 Apr 19 11:20:11] report_variability_full ............: False [18 Apr 19 11:20:11] WARNING ===================================== Your minimum contig length is set to 1,000 base pairs. So anvi'o will not take into consideration anything below that. If you need to kill this an restart your analysis with another minimum contig length value, feel free to press CTRL+C. [18 Apr 19 11:20:14] input_bam ..........................: MG6.bam [18 Apr 19 11:20:14] output_dir .........................: /gscratch/scrubbed/samwhite/outputs/20190401_metagenomics_pgen_anvio/MG6.bam-ANVIO_PROFILE [18 Apr 19 11:20:14] total_reads_mapped .................: 134,500,522 [18 Apr 19 11:20:14] num_contigs ........................: 2,276,153 [18 Apr 19 11:20:18] num_contigs_after_M ................: 496,414 [18 Apr 19 11:20:18] num_contigs ........................: 496,414 [18 Apr 19 11:20:18] num_splits .........................: 499,952 [18 Apr 19 11:20:18] total_length .......................: 1,342,986,697 [20 Apr 19 02:25:20] New data for 'layers' in data group 'default' ===================================== [20 Apr 19 02:25:20] Data key "total_reads_mapped" ......: Predicted type: int [20 Apr 19 02:25:20] Data key "num_SNVs_reported" .......: Predicted type: int [20 Apr 19 02:25:20] NEW DATA ===================================== [20 Apr 19 02:25:20] Database ...........................: profile [20 Apr 19 02:25:20] Data group .........................: default [20 Apr 19 02:25:20] Data table .........................: layers [20 Apr 19 02:25:20] New data keys ......................: total_reads_mapped, num_SNVs_reported. [20 Apr 19 02:25:22] * Happy [20 Apr 19 02:25:22] Bye.