CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1681273 654026 71.99 2335299 2 1856491 639773 74.37 2496264 3 1750592 630781 73.51 2381373 4 1681450 611630 73.33 2293080 5 1699943 609084 73.62 2309027 6 1701823 603309 73.83 2305132 7 1768391 656222 72.93 2424613 8 1753024 613160 74.09 2366184 9 1750107 596659 74.58 2346766 10 1824655 611257 74.91 2435912 11 1852740 617817 74.99 2470557 12 1841281 600047 75.42 2441328 13 1860327 599135 75.64 2459462 14 1860364 604497 75.48 2464861 15 1864380 592587 75.88 2456967 16 1883579 596257 75.96 2479836 17 1874007 598810 75.78 2472817 18 1868854 586457 76.11 2455311 19 1880618 588370 76.17 2468988 20 1882386 589094 76.16 2471480 21 1886520 584553 76.34 2471073 22 1887462 587634 76.26 2475096 23 1893623 588941 76.28 2482564 24 1883749 583452 76.35 2467201 25 1904019 592454 76.27 2496473 26 1891722 595283 76.06 2487005 27 1866598 581391 76.25 2447989 28 1885745 591182 76.13 2476927 29 1868169 584656 76.16 2452825 30 1849832 573779 76.33 2423611 31 1876261 587094 76.17 2463355 32 1862074 580361 76.24 2442435 33 1843029 570059 76.38 2413088 34 1861935 579120 76.28 2441055 35 1833314 573207 76.18 2406521 36 1811521 561528 76.34 2373049 37 1809672 564686 76.22 2374358 38 1801810 565484 76.11 2367294 39 1784311 557071 76.21 2341382 40 1788135 561135 76.11 2349270 41 1748226 551828 76.01 2300054 42 1717153 538564 76.12 2255717 43 1712966 536051 76.17 2249017 44 1702677 539707 75.93 2242384 45 1672524 524866 76.11 2197390 46 1675775 531293 75.93 2207068 47 1657533 529159 75.80 2186692 48 1620140 515379 75.87 2135519 49 1614366 515793 75.79 2130159 50 1586811 512959 75.57 2099770 51 1544691 493857 75.77 2038548 52 1541782 492492 75.79 2034274 53 1522397 487536 75.74 2009933 54 1504405 481834 75.74 1986239 55 1501022 479814 75.78 1980836 56 1478471 477412 75.59 1955883 57 1462962 470118 75.68 1933080 58 1428966 463385 75.51 1892351 59 1401578 456974 75.41 1858552 60 1374797 446560 75.48 1821357 61 1361072 442550 75.46 1803622 62 1326312 433706 75.36 1760018 63 1299227 424956 75.35 1724183 64 1284064 421489 75.29 1705553 65 1258643 414933 75.21 1673576 66 1229120 403889 75.27 1633009 67 1216061 400390 75.23 1616451 68 1191805 395300 75.09 1587105 69 1161506 385546 75.08 1547052 70 1150014 386283 74.86 1536297 71 1125542 377659 74.88 1503201 72 1092086 369861 74.70 1461947 73 1068818 363681 74.61 1432499 74 1045555 359059 74.44 1404614 75 1007710 341907 74.67 1349617 76 980357 334159 74.58 1314516 77 937588 324479 74.29 1262067 78 857310 298173 74.19 1155483 79 690792 241493 74.10 932285 80 319116 114034 73.67 433150 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 246320 3711880 6.22 3958200 2 143619 3785318 3.66 3928937 3 134467 3906872 3.33 4041339 4 96815 3881263 2.43 3978078 5 110094 3793873 2.82 3903967 6 122445 3866945 3.07 3989390 7 90528 3918699 2.26 4009227 8 92748 4016211 2.26 4108959 9 83490 3938006 2.08 4021496 10 82561 3936257 2.05 4018818 11 82420 3938249 2.05 4020669 12 79068 4015999 1.93 4095067 13 79265 3951719 1.97 4030984 14 76700 3962491 1.90 4039191 15 74950 4077041 1.81 4151991 16 74731 4043395 1.81 4118126 17 75119 4006963 1.84 4082082 18 74078 4105013 1.77 4179091 19 72396 4053662 1.75 4126058 20 72290 4035170 1.76 4107460 21 72034 4095911 1.73 4167945 22 72218 4039776 1.76 4111994 23 73832 4061324 1.79 4135156 24 75557 4103614 1.81 4179171 25 72192 4049972 1.75 4122164 26 74620 4004810 1.83 4079430 27 72454 4097723 1.74 4170177 28 71388 4040901 1.74 4112289 29 74429 4049681 1.80 4124110 30 70850 4008391 1.74 4079241 31 71120 4012568 1.74 4083688 32 71183 3974219 1.76 4045402 33 73649 4004473 1.81 4078122 34 72724 3907272 1.83 3979996 35 70116 3882817 1.77 3952933 36 68832 3895167 1.74 3963999 37 68529 3812298 1.77 3880827 38 72847 3787122 1.89 3859969 39 66350 3842792 1.70 3909142 40 65245 3763254 1.70 3828499 41 66240 3724643 1.75 3790883 42 64382 3731685 1.70 3796067 43 62728 3660719 1.68 3723447 44 64026 3593255 1.75 3657281 45 62779 3638946 1.70 3701725 46 61709 3544829 1.71 3606538 47 64587 3511413 1.81 3576000 48 61737 3492231 1.74 3553968 49 61579 3430047 1.76 3491626 50 62723 3365381 1.83 3428104 51 62406 3381057 1.81 3443463 52 59123 3300773 1.76 3359896 53 58670 3252585 1.77 3311255 54 56397 3243898 1.71 3300295 55 56139 3190663 1.73 3246802 56 56534 3140588 1.77 3197122 57 54643 3147844 1.71 3202487 58 53409 3048057 1.72 3101466 59 57022 2999657 1.87 3056679 60 52606 3001448 1.72 3054054 61 51658 2899448 1.75 2951106 62 54113 2842706 1.87 2896819 63 50755 2837918 1.76 2888673 64 49603 2752681 1.77 2802284 65 49531 2705950 1.80 2755481 66 48419 2674715 1.78 2723134 67 47243 2613444 1.78 2660687 68 47124 2556983 1.81 2604107 69 46069 2527359 1.79 2573428 70 44826 2460313 1.79 2505139 71 46887 2418143 1.90 2465030 72 43340 2380689 1.79 2424029 73 43046 2315191 1.83 2358237 74 42695 2261892 1.85 2304587 75 43647 2238169 1.91 2281816 76 41503 2140949 1.90 2182452 77 40013 2039412 1.92 2079425 78 37073 1891772 1.92 1928845 79 30272 1510510 1.96 1540782 80 14145 702242 1.97 716387 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 586221 11129157 5.00 11715378 2 540779 11067990 4.66 11608769 3 469746 11275402 4.00 11745148 4 420460 11269517 3.60 11689977 5 426478 11083656 3.71 11510134 6 434091 10727568 3.89 11161659 7 377003 10805684 3.37 11182687 8 364459 10709462 3.29 11073921 9 377436 10869341 3.36 11246777 10 371615 11021174 3.26 11392789 11 355379 10776923 3.19 11132302 12 348279 10829111 3.12 11177390 13 356308 10982233 3.14 11338541 14 334442 10939466 2.97 11273908 15 337561 11088243 2.95 11425804 16 335583 11196931 2.91 11532514 17 325678 11085386 2.85 11411064 18 324256 11181080 2.82 11505336 19 328133 11266464 2.83 11594597 20 315957 11135699 2.76 11451656 21 321886 11169807 2.80 11491693 22 317375 11129873 2.77 11447248 23 309252 11104202 2.71 11413454 24 313948 11084098 2.75 11398046 25 304171 11136755 2.66 11440926 26 294214 11011184 2.60 11305398 27 291848 11009646 2.58 11301494 28 281269 11043475 2.48 11324744 29 275920 10857403 2.48 11133323 30 266152 10824441 2.40 11090593 31 264774 11024267 2.35 11289041 32 248113 10732303 2.26 10980416 33 251772 10647928 2.31 10899700 34 245791 10704568 2.24 10950359 35 228394 10614083 2.11 10842477 36 219672 10561702 2.04 10781374 37 218006 10560552 2.02 10778558 38 208787 10402378 1.97 10611165 39 205502 10385285 1.94 10590787 40 203781 10409403 1.92 10613184 41 199446 10274807 1.90 10474253 42 193884 10168233 1.87 10362117 43 193147 10171580 1.86 10364727 44 188951 9969519 1.86 10158470 45 188280 9875328 1.87 10063608 46 186235 9912911 1.84 10099146 47 186774 9760033 1.88 9946807 48 182417 9753291 1.84 9935708 49 182052 9734961 1.84 9917013 50 180237 9403623 1.88 9583860 51 180358 9300328 1.90 9480686 52 174365 9364346 1.83 9538711 53 169630 9048793 1.84 9218423 54 166021 8935398 1.82 9101419 55 165638 8895138 1.83 9060776 56 161072 8747428 1.81 8908500 57 161532 8708385 1.82 8869917 58 157805 8556267 1.81 8714072 59 165933 8452848 1.93 8618781 60 153640 8301209 1.82 8454849 61 153217 8163829 1.84 8317046 62 153325 8005501 1.88 8158826 63 148991 7935964 1.84 8084955 64 146949 7914053 1.82 8061002 65 144868 7669967 1.85 7814835 66 140672 7517089 1.84 7657761 67 139726 7461242 1.84 7600968 68 137929 7384412 1.83 7522341 69 136208 7233412 1.85 7369620 70 132716 7056533 1.85 7189249 71 135768 6891740 1.93 7027508 72 129004 6799769 1.86 6928773 73 126982 6603579 1.89 6730561 74 123759 6422777 1.89 6546536 75 128806 6255678 2.02 6384484 76 123454 6108961 1.98 6232415 77 114827 5819087 1.94 5933914 78 108459 5391464 1.97 5499923 79 89021 4376355 1.99 4465376 80 38695 1965846 1.93 2004541 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1095363 473097 69.84 1568460 2 1010866 376490 72.86 1387356 3 931027 350219 72.67 1281246 4 784545 322960 70.84 1107505 5 769758 307150 71.48 1076908 6 758367 298758 71.74 1057125 7 772884 329860 70.09 1102744 8 752745 286369 72.44 1039114 9 741996 275451 72.93 1017447 10 750739 276805 73.06 1027544 11 745618 275604 73.01 1021222 12 718280 262916 73.20 981196 13 711436 251421 73.89 962857 14 700995 249368 73.76 950363 15 693036 240754 74.22 933790 16 679473 234764 74.32 914237 17 658355 231107 74.02 889462 18 629736 216847 74.39 846583 19 615375 209089 74.64 824464 20 598870 204533 74.54 803403 21 585989 198552 74.69 784541 22 571279 191774 74.87 763053 23 558602 188071 74.81 746673 24 546432 182203 74.99 728635 25 539766 180778 74.91 720544 26 522759 176664 74.74 699423 27 502868 168699 74.88 671567 28 497066 166664 74.89 663730 29 480196 161981 74.78 642177 30 464742 154186 75.09 618928 31 462311 154456 74.96 616767 32 450735 149704 75.07 600439 33 438043 145785 75.03 583828 34 434084 144205 75.06 578289 35 415246 139137 74.90 554383 36 400629 133337 75.03 533966 37 391545 130844 74.95 522389 38 383194 128517 74.88 511711 39 373811 125633 74.85 499444 40 367523 124139 74.75 491662 41 349258 119578 74.49 468836 42 336700 113506 74.79 450206 43 328922 111572 74.67 440494 44 322166 108922 74.73 431088 45 313425 105317 74.85 418742 46 305081 103960 74.58 409041 47 298956 103539 74.28 402495 48 286511 98187 74.48 384698 49 279122 96175 74.37 375297 50 270765 93767 74.28 364532 51 260431 89033 74.52 349464 52 254605 87360 74.45 341965 53 248504 85462 74.41 333966 54 241364 83436 74.31 324800 55 238726 82390 74.34 321116 56 230861 81285 73.96 312146 57 228988 80044 74.10 309032 58 218460 76532 74.06 294992 59 210413 74168 73.94 284581 60 203856 71413 74.06 275269 61 200239 70472 73.97 270711 62 193875 68821 73.80 262696 63 188371 66175 74.00 254546 64 183803 64738 73.95 248541 65 177111 63278 73.68 240389 66 171349 60739 73.83 232088 67 167334 59638 73.72 226972 68 161923 58118 73.59 220041 69 156580 56656 73.43 213236 70 153441 56019 73.26 209460 71 150082 55391 73.04 205473 72 143781 53459 72.90 197240 73 139440 52251 72.74 191691 74 134871 50833 72.63 185704 75 129692 47864 73.04 177556 76 124358 46360 72.84 170718 77 117632 45109 72.28 162741 78 108440 42168 72.00 150608 79 92917 36741 71.66 129658 80 61361 25372 70.75 86733 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 196327 2593810 7.04 2790137 2 91845 2125334 4.14 2217179 3 101052 2044513 4.71 2145565 4 53059 1962713 2.63 2015772 5 63588 1786584 3.44 1850172 6 84115 1761994 4.56 1846109 7 45988 1772639 2.53 1818627 8 50261 1831971 2.67 1882232 9 38831 1681833 2.26 1720664 10 38110 1655289 2.25 1693399 11 36688 1632139 2.20 1668827 12 32981 1643746 1.97 1676727 13 31597 1589595 1.95 1621192 14 30343 1539621 1.93 1569964 15 29157 1548800 1.85 1577957 16 27829 1503323 1.82 1531152 17 27025 1439375 1.84 1466400 18 25558 1418042 1.77 1443600 19 24440 1360141 1.77 1384581 20 23658 1319093 1.76 1342751 21 22905 1304698 1.73 1327603 22 21947 1250452 1.72 1272399 23 22018 1236235 1.75 1258253 24 21169 1218247 1.71 1239416 25 20252 1166250 1.71 1186502 26 19961 1130760 1.73 1150721 27 20103 1130071 1.75 1150174 28 18976 1086485 1.72 1105461 29 18840 1075044 1.72 1093884 30 17727 1027462 1.70 1045189 31 18182 1011585 1.77 1029767 32 17120 979863 1.72 996983 33 17218 969946 1.74 987164 34 15818 922478 1.69 938296 35 15695 900068 1.71 915763 36 15042 879171 1.68 894213 37 14690 842812 1.71 857502 38 14936 826415 1.78 841351 39 13871 818951 1.67 832822 40 13152 789764 1.64 802916 41 13456 772681 1.71 786137 42 12821 752956 1.67 765777 43 12333 725387 1.67 737720 44 12327 700375 1.73 712702 45 11737 694759 1.66 706496 46 11261 669884 1.65 681145 47 11387 655379 1.71 666766 48 10827 633127 1.68 643954 49 10657 613771 1.71 624428 50 10590 593505 1.75 604095 51 10158 588312 1.70 598470 52 9483 566379 1.65 575862 53 9622 548507 1.72 558129 54 9178 539159 1.67 548337 55 9038 523811 1.70 532849 56 8853 509838 1.71 518691 57 9313 508749 1.80 518062 58 8124 482742 1.66 490866 59 8269 469172 1.73 477441 60 7719 465151 1.63 472870 61 8092 439760 1.81 447852 62 7379 431028 1.68 438407 63 7377 423669 1.71 431046 64 6968 407791 1.68 414759 65 6984 396761 1.73 403745 66 6661 387974 1.69 394635 67 6390 374876 1.68 381266 68 6475 365651 1.74 372126 69 6166 355065 1.71 361231 70 6018 346086 1.71 352104 71 6257 336105 1.83 342362 72 5692 326607 1.71 332299 73 5466 316917 1.70 322383 74 5484 306628 1.76 312112 75 5200 301669 1.69 306869 76 4997 286065 1.72 291062 77 4805 272213 1.73 277018 78 4447 252789 1.73 257236 79 3877 217633 1.75 221510 80 2652 144169 1.81 146821 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 421284 8066678 4.96 8487962 2 328159 6363500 4.90 6691659 3 233296 6014373 3.73 6247669 4 179572 5680456 3.06 5860028 5 190664 5440578 3.39 5631242 6 222996 5084499 4.20 5307495 7 142479 5029958 2.75 5172437 8 140896 4904447 2.79 5045343 9 138697 4918195 2.74 5056892 10 130034 4866750 2.60 4996784 11 119156 4652761 2.50 4771917 12 108296 4594849 2.30 4703145 13 103852 4578789 2.22 4682641 14 98132 4478502 2.14 4576634 15 94698 4454655 2.08 4549353 16 88642 4385951 1.98 4474593 17 83397 4238268 1.93 4321665 18 78488 4146747 1.86 4225235 19 75400 4023706 1.84 4099106 20 71270 3887750 1.80 3959020 21 69017 3809265 1.78 3878282 22 65989 3680921 1.76 3746910 23 64509 3604718 1.76 3669227 24 61779 3509061 1.73 3570840 25 60904 3436905 1.74 3497809 26 58314 3333696 1.72 3392010 27 59626 3252206 1.80 3311832 28 55272 3189104 1.70 3244376 29 53937 3081366 1.72 3135303 30 52344 3003255 1.71 3055599 31 55180 3000723 1.81 3055903 32 49740 2849232 1.72 2898972 33 51027 2773373 1.81 2824400 34 47820 2733883 1.72 2781703 35 47622 2665823 1.76 2713445 36 45456 2603617 1.72 2649073 37 45506 2548175 1.75 2593681 38 43377 2467040 1.73 2510417 39 42416 2413218 1.73 2455634 40 41337 2374624 1.71 2415961 41 40596 2308826 1.73 2349422 42 38645 2236443 1.70 2275088 43 38473 2197104 1.72 2235577 44 37539 2118180 1.74 2155719 45 36446 2060093 1.74 2096539 46 36175 2044347 1.74 2080522 47 35376 1984696 1.75 2020072 48 34754 1971260 1.73 2006014 49 34273 1937040 1.74 1971313 50 32471 1829473 1.74 1861944 51 31575 1784515 1.74 1816090 52 31537 1784510 1.74 1816047 53 30261 1680018 1.77 1710279 54 29404 1635775 1.77 1665179 55 28919 1612187 1.76 1641106 56 27631 1567591 1.73 1595222 57 29617 1549456 1.88 1579073 58 26692 1488981 1.76 1515673 59 26589 1478302 1.77 1504891 60 25238 1419460 1.75 1444698 61 26211 1369493 1.88 1395704 62 23934 1338009 1.76 1361943 63 23930 1313229 1.79 1337159 64 23500 1306704 1.77 1330204 65 22697 1242121 1.79 1264818 66 21658 1203384 1.77 1225042 67 21398 1187115 1.77 1208513 68 21129 1181659 1.76 1202788 69 21278 1146815 1.82 1168093 70 19912 1098374 1.78 1118286 71 20102 1069007 1.85 1089109 72 19056 1053019 1.78 1072075 73 18295 1000683 1.80 1018978 74 17633 965681 1.79 983314 75 17175 937029 1.80 954204 76 16870 908780 1.82 925650 77 15831 869267 1.79 885098 78 14783 811329 1.79 826112 79 12878 715239 1.77 728117 80 8453 474414 1.75 482867